MOTIFSIM - MOTIF SIMilarity Detection Tool

Version 2.2

INPUT

Input Parameters
Number of files: 2
Number of top significant motifs: 10
Number of best matches: 10
Similarity cutoff >= 0.75
Matching motif database: UniProbe Mus Musculus
Motif tree: Yes
Combined similar motifs: Yes
Output file type: All
Output file format: All

Input files and motif counts
File name Count of motifs Dataset number
MEME-ChIP_DM721.txt 11 1
PScanChIP_DM721.txt 37 2

RESULTS

Top 10 Significant Motifs - Global Matching (Highest to Lowest)

Dataset #: 1 Motif ID: 4 Motif name: Motif 4

Original motif     Consensus sequence: CTCTGY Reverse complement motif     Consensus sequence: KCAGAG

Best Matches for Top Significant Motif ID 4 (Highest to Lowest)

Dataset #: 2
Motif ID: 43
Motif name: NR1H2RXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.012269

Alignment:
AAAGGTCAAAGGTCAAC
-----KCAGAG------

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT


Dataset #: 2
Motif ID: 20
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.0140102

Alignment:
BTRGGDCARAGGKCA
-----KCAGAG----

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 2
Motif ID: 22
Motif name: NR2F1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0186793

Alignment:
AKGYYCAAAGRTCA
----KCAGAG----

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA


Dataset #: 2
Motif ID: 34
Motif name: HNF4A
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.020602

Alignment:
RGGBCAAAGKYCA
---KCAGAG----

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK


Dataset #: 2
Motif ID: 37
Motif name: MIZF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.0221665

Alignment:
BAACGTCCGC
----CTCTGY

Original motif     Consensus sequence: BAACGTCCGC Reverse complement motif     Consensus sequence: GCGGACGTTV


Dataset #: 2
Motif ID: 35
Motif name: INSM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0255256

Alignment:
TGYCAGGGGGCR
--KCAGAG----

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA


Dataset #: 2
Motif ID: 16
Motif name: SP1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0349642

Alignment:
CCCCKCCCCC
CTCTGY----

Original motif     Consensus sequence: CCCCKCCCCC Reverse complement motif     Consensus sequence: GGGGGYGGGG


Dataset #: 2
Motif ID: 19
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0376108

Alignment:
GGYGCTGTCCATGGTGCTGAA
--CTCTGY-------------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 2
Motif ID: 12
Motif name: Zfx
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.0448449

Alignment:
BBVGCCBVGGCCTV
---KCAGAG-----

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB


Dataset #: 2
Motif ID: 29
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.0454269

Alignment:
MGGTCAGGGTGACCTRDBHV
---KCAGAG-----------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV


Dataset #: 1 Motif ID: 5 Motif name: Motif 5

Original motif     Consensus sequence: ATKTM Reverse complement motif     Consensus sequence: RARAT

Best Matches for Top Significant Motif ID 5 (Highest to Lowest)

Dataset #: 2
Motif ID: 18
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 10
Number of overlap: 5
Similarity score: 0.0256083

Alignment:
BGRRRGRGGRTGRTTYGGGG
------RARAT---------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG


Dataset #: 2
Motif ID: 44
Motif name: NR4A2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 5
Similarity score: 0.0276382

Alignment:
AAGGTCAC
RARAT---

Original motif     Consensus sequence: AAGGTCAC Reverse complement motif     Consensus sequence: GTGACCTT


Dataset #: 2
Motif ID: 22
Motif name: NR2F1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 5
Similarity score: 0.0279129

Alignment:
AKGYYCAAAGRTCA
-------RARAT--

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA


Dataset #: 2
Motif ID: 37
Motif name: MIZF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 5
Similarity score: 0.0292478

Alignment:
BAACGTCCGC
--ATKTM---

Original motif     Consensus sequence: BAACGTCCGC Reverse complement motif     Consensus sequence: GCGGACGTTV


Dataset #: 2
Motif ID: 43
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 5
Similarity score: 0.0292478

Alignment:
AAAGGTCAAAGGTCAAC
---------ATKTM---

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT


Dataset #: 2
Motif ID: 20
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 5
Similarity score: 0.0305369

Alignment:
TGRCCTKTGHCCKAB
----ATKTM------

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 2
Motif ID: 19
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 13
Number of overlap: 5
Similarity score: 0.0315454

Alignment:
GGYGCTGTCCATGGTGCTGAA
----ATKTM------------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 2
Motif ID: 47
Motif name: RXRRAR_DR5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 5
Similarity score: 0.0335956

Alignment:
RGKTCABVVRGAGGTCA
ATKTM------------

Original motif     Consensus sequence: RGKTCABVVRGAGGTCA Reverse complement motif     Consensus sequence: TGACCTCKVVBTGAYCK


Dataset #: 2
Motif ID: 46
Motif name: RORA_1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 5
Similarity score: 0.0336052

Alignment:
AWVDAGGTCA
---RARAT--

Original motif     Consensus sequence: AWVDAGGTCA Reverse complement motif     Consensus sequence: TGACCTDVWT


Dataset #: 2
Motif ID: 34
Motif name: HNF4A
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 5
Similarity score: 0.0367105

Alignment:
RGGBCAAAGKYCA
-------ATKTM-

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK


Dataset #: 1 Motif ID: 6 Motif name: Motif 6

Original motif     Consensus sequence: CMGCRGC Reverse complement motif     Consensus sequence: GCKGCYG

Best Matches for Top Significant Motif ID 6 (Highest to Lowest)

Dataset #: 2
Motif ID: 19
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 13
Number of overlap: 7
Similarity score: 0.0205607

Alignment:
TTCAGCACCATGGACAGCKCC
--CMGCRGC------------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 2
Motif ID: 37
Motif name: MIZF
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0322623

Alignment:
GCGGACGTTV
GCKGCYG---

Original motif     Consensus sequence: BAACGTCCGC Reverse complement motif     Consensus sequence: GCGGACGTTV


Dataset #: 2
Motif ID: 12
Motif name: Zfx
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0.038091

Alignment:
BBVGCCBVGGCCTV
----CMGCRGC---

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB


Dataset #: 2
Motif ID: 15
Motif name: TFAP2A
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0.0393168

Alignment:
SCMVBBGGC
--CMGCRGC

Original motif     Consensus sequence: GCCBBVRGS Reverse complement motif     Consensus sequence: SCMVBBGGC


Dataset #: 2
Motif ID: 45
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 7
Similarity score: 0.0448462

Alignment:
MSGKKRCGCWDCABTGBBCD
-------GCKGCYG------

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 2
Motif ID: 28
Motif name: Egr1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 7
Similarity score: 0.0453576

Alignment:
HGCGTGGGCGK
---GCKGCYG-

Original motif     Consensus sequence: HGCGTGGGCGK Reverse complement motif     Consensus sequence: YCGCCCACGCH


Dataset #: 2
Motif ID: 36
Motif name: Klf4
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0.0476958

Alignment:
GCCYCMCCCD
-CMGCRGC--

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD


Dataset #: 2
Motif ID: 16
Motif name: SP1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0490991

Alignment:
GGGGGYGGGG
GCKGCYG---

Original motif     Consensus sequence: CCCCKCCCCC Reverse complement motif     Consensus sequence: GGGGGYGGGG


Dataset #: 2
Motif ID: 18
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.0498726

Alignment:
BGRRRGRGGRTGRTTYGGGG
-----GCKGCYG--------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG


Dataset #: 2
Motif ID: 35
Motif name: INSM1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.0511926

Alignment:
MGCCCCCTGMCA
---CMGCRGC--

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA


Dataset #: 1 Motif ID: 8 Motif name: Motif 8

Original motif     Consensus sequence: CTGGGA Reverse complement motif     Consensus sequence: TCCCAG

Best Matches for Top Significant Motif ID 8 (Highest to Lowest)

Dataset #: 2
Motif ID: 19
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 6
Similarity score: 0.0392549

Alignment:
GGYGCTGTCCATGGTGCTGAA
-------TCCCAG--------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 2
Motif ID: 23
Motif name: MZF1_1-4
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0416319

Alignment:
TCCCCV
TCCCAG

Original motif     Consensus sequence: BGGGGA Reverse complement motif     Consensus sequence: TCCCCV


Dataset #: 2
Motif ID: 18
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0509122

Alignment:
BGRRRGRGGRTGRTTYGGGG
--------------CTGGGA

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG


Dataset #: 2
Motif ID: 35
Motif name: INSM1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.0557857

Alignment:
TGYCAGGGGGCR
---CTGGGA---

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA


Dataset #: 2
Motif ID: 13
Motif name: Zfp423
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.0624145

Alignment:
GYRYCCMTKGGYRSC
---TCCCAG------

Original motif     Consensus sequence: GSMMCCYARGGKKKC Reverse complement motif     Consensus sequence: GYRYCCMTKGGYRSC


Dataset #: 2
Motif ID: 43
Motif name: NR1H2RXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.0650784

Alignment:
AAAGGTCAAAGGTCAAC
-----TCCCAG------

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT


Dataset #: 2
Motif ID: 48
Motif name: Tcfcp2l1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 6
Similarity score: 0.0663804

Alignment:
CKGGDTBDMMCTGG
CTGGGA--------

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG


Dataset #: 2
Motif ID: 28
Motif name: Egr1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0678562

Alignment:
YCGCCCACGCH
--TCCCAG---

Original motif     Consensus sequence: HGCGTGGGCGK Reverse complement motif     Consensus sequence: YCGCCCACGCH


Dataset #: 2
Motif ID: 24
Motif name: Ar
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0714107

Alignment:
HWDAGHACRHHVTGTHCCHVMV
--------------TCCCAG--

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH


Dataset #: 2
Motif ID: 12
Motif name: Zfx
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.0718041

Alignment:
BBVGCCBVGGCCTV
-----CTGGGA---

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB


Dataset #: 1 Motif ID: 2 Motif name: Motif 2

Original motif     Consensus sequence: AMACA Reverse complement motif     Consensus sequence: TGTRT

Best Matches for Top Significant Motif ID 2 (Highest to Lowest)

Dataset #: 2
Motif ID: 18
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 11
Number of overlap: 5
Similarity score: 0.0243918

Alignment:
CCCCMAAMCAMCCMCMMMCV
-----AMACA----------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG


Dataset #: 2
Motif ID: 24
Motif name: Ar
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 14
Number of overlap: 5
Similarity score: 0.0429089

Alignment:
HWDAGHACRHHVTGTHCCHVMV
----AMACA-------------

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH


Dataset #: 2
Motif ID: 20
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 5
Similarity score: 0.0595073

Alignment:
TGRCCTKTGHCCKAB
-----TGTRT-----

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 2
Motif ID: 26
Motif name: ArntAhr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 5
Similarity score: 0.0600161

Alignment:
YGCGTG
TGTRT-

Original motif     Consensus sequence: YGCGTG Reverse complement motif     Consensus sequence: CACGCM


Dataset #: 2
Motif ID: 45
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 11
Number of overlap: 5
Similarity score: 0.0620995

Alignment:
MSGKKRCGCWDCABTGBBCD
-----AMACA----------

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 2
Motif ID: 22
Motif name: NR2F1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 5
Similarity score: 0.0650242

Alignment:
AKGYYCAAAGRTCA
------AMACA---

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA


Dataset #: 2
Motif ID: 35
Motif name: INSM1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 5
Similarity score: 0.0670984

Alignment:
MGCCCCCTGMCA
-------AMACA

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA


Dataset #: 2
Motif ID: 33
Motif name: HIF1AARNT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 5
Similarity score: 0.0700905

Alignment:
VCACGTBV
AMACA---

Original motif     Consensus sequence: VBACGTGV Reverse complement motif     Consensus sequence: VCACGTBV


Dataset #: 2
Motif ID: 38
Motif name: Myc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 5
Similarity score: 0.0708148

Alignment:
VGCACGTGGH
-AMACA----

Original motif     Consensus sequence: VGCACGTGGH Reverse complement motif     Consensus sequence: DCCACGTGCV


Dataset #: 2
Motif ID: 34
Motif name: HNF4A
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 5
Similarity score: 0.071574

Alignment:
TGMYCTTTGBCCK
-----TGTRT---

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK


Dataset #: 1 Motif ID: 3 Motif name: Motif 3

Original motif     Consensus sequence: AGSCWGG Reverse complement motif     Consensus sequence: CCWGSCT

Best Matches for Top Significant Motif ID 3 (Highest to Lowest)

Dataset #: 2
Motif ID: 32
Motif name: EWSR1-FLI1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 7
Similarity score: 0.0395671

Alignment:
GGAAGGAAGGAAGGAAGG
-------AGSCWGG----

Original motif     Consensus sequence: GGAAGGAAGGAAGGAAGG Reverse complement motif     Consensus sequence: CCTTCCTTCCTTCCTTCC


Dataset #: 2
Motif ID: 35
Motif name: INSM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.0494688

Alignment:
MGCCCCCTGMCA
-----CCWGSCT

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA


Dataset #: 2
Motif ID: 48
Motif name: Tcfcp2l1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0669354

Alignment:
CCAGYYHVADCCRG
CCWGSCT-------

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG


Dataset #: 2
Motif ID: 19
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 7
Similarity score: 0.0693747

Alignment:
TTCAGCACCATGGACAGCKCC
------AGSCWGG--------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 2
Motif ID: 16
Motif name: SP1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.0695377

Alignment:
CCCCKCCCCC
-CCWGSCT--

Original motif     Consensus sequence: CCCCKCCCCC Reverse complement motif     Consensus sequence: GGGGGYGGGG


Dataset #: 2
Motif ID: 12
Motif name: Zfx
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 7
Similarity score: 0.0720685

Alignment:
BBVGCCBVGGCCTV
------CCWGSCT-

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB


Dataset #: 2
Motif ID: 29
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 7
Similarity score: 0.0771405

Alignment:
MGGTCAGGGTGACCTRDBHV
------------CCWGSCT-

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV


Dataset #: 2
Motif ID: 46
Motif name: RORA_1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0.0772276

Alignment:
TGACCTDVWT
---CCWGSCT

Original motif     Consensus sequence: AWVDAGGTCA Reverse complement motif     Consensus sequence: TGACCTDVWT


Dataset #: 2
Motif ID: 36
Motif name: Klf4
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0.0798994

Alignment:
GCCYCMCCCD
---CCWGSCT

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD


Dataset #: 2
Motif ID: 39
Motif name: MYCMAX
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 7
Similarity score: 0.0839075

Alignment:
RASCACGTGGT
AGSCWGG----

Original motif     Consensus sequence: RASCACGTGGT Reverse complement motif     Consensus sequence: ACCACGTGSTM


Dataset #: 1 Motif ID: 1 Motif name: Motif 1

Original motif     Consensus sequence: RGGAAR Reverse complement motif     Consensus sequence: MTTCCK

Best Matches for Top Significant Motif ID 1 (Highest to Lowest)

Dataset #: 2
Motif ID: 32
Motif name: EWSR1-FLI1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 12
Number of overlap: 6
Similarity score: 0.0146511

Alignment:
GGAAGGAAGGAAGGAAGG
-----------RGGAAR-

Original motif     Consensus sequence: GGAAGGAAGGAAGGAAGG Reverse complement motif     Consensus sequence: CCTTCCTTCCTTCCTTCC


Dataset #: 2
Motif ID: 37
Motif name: MIZF
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.0608243

Alignment:
BAACGTCCGC
---MTTCCK-

Original motif     Consensus sequence: BAACGTCCGC Reverse complement motif     Consensus sequence: GCGGACGTTV


Dataset #: 2
Motif ID: 41
Motif name: MZF1_5-13
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0753789

Alignment:
BKAGGGGDAD
----RGGAAR

Original motif     Consensus sequence: BKAGGGGDAD Reverse complement motif     Consensus sequence: BTHCCCCTYB


Dataset #: 2
Motif ID: 42
Motif name: NFKB1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0757695

Alignment:
GGGGAAKCCCC
-RGGAAR----

Original motif     Consensus sequence: GGGGRTTCCCC Reverse complement motif     Consensus sequence: GGGGAAKCCCC


Dataset #: 2
Motif ID: 20
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.0800484

Alignment:
BTRGGDCARAGGKCA
---RGGAAR------

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 2
Motif ID: 19
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.0829223

Alignment:
TTCAGCACCATGGACAGCKCC
----------RGGAAR-----

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 2
Motif ID: 35
Motif name: INSM1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0.0832926

Alignment:
TGYCAGGGGGCR
------RGGAAR

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA


Dataset #: 2
Motif ID: 18
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.0835516

Alignment:
BGRRRGRGGRTGRTTYGGGG
----RGGAAR----------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG


Dataset #: 2
Motif ID: 24
Motif name: Ar
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.0836451

Alignment:
HWDAGHACRHHVTGTHCCHVMV
---RGGAAR-------------

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH


Dataset #: 2
Motif ID: 27
Motif name: E2F1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0842331

Alignment:
GCGCSAAA
--RGGAAR

Original motif     Consensus sequence: TTTSGCGC Reverse complement motif     Consensus sequence: GCGCSAAA


Dataset #: 2
Motif ID: 13
Motif name: Zfp423
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.0850287

Alignment:
GYRYCCMTKGGYRSC
--------RGGAAR-

Original motif     Consensus sequence: GSMMCCYARGGKKKC Reverse complement motif     Consensus sequence: GYRYCCMTKGGYRSC


Dataset #: 1 Motif ID: 7 Motif name: Motif 7

Original motif     Consensus sequence: CCCRCCCC Reverse complement motif     Consensus sequence: GGGGMGGG

Best Matches for Top Significant Motif ID 7 (Highest to Lowest)

Dataset #: 2
Motif ID: 16
Motif name: SP1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0423611

Alignment:
CCCCKCCCCC
-CCCRCCCC-

Original motif     Consensus sequence: CCCCKCCCCC Reverse complement motif     Consensus sequence: GGGGGYGGGG


Dataset #: 2
Motif ID: 36
Motif name: Klf4
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0461644

Alignment:
DGGGYGKGGC
GGGGMGGG--

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD


Dataset #: 2
Motif ID: 28
Motif name: Egr1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0650374

Alignment:
YCGCCCACGCH
---CCCRCCCC

Original motif     Consensus sequence: HGCGTGGGCGK Reverse complement motif     Consensus sequence: YCGCCCACGCH


Dataset #: 2
Motif ID: 18
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0.076401

Alignment:
CCCCMAAMCAMCCMCMMMCV
------CCCRCCCC------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG


Dataset #: 2
Motif ID: 42
Motif name: NFKB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0893429

Alignment:
GGGGAAKCCCC
GGGGMGGG---

Original motif     Consensus sequence: GGGGRTTCCCC Reverse complement motif     Consensus sequence: GGGGAAKCCCC


Dataset #: 2
Motif ID: 35
Motif name: INSM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0936832

Alignment:
TGYCAGGGGGCR
GGGGMGGG----

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA


Dataset #: 2
Motif ID: 32
Motif name: EWSR1-FLI1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0950969

Alignment:
GGAAGGAAGGAAGGAAGG
------GGGGMGGG----

Original motif     Consensus sequence: GGAAGGAAGGAAGGAAGG Reverse complement motif     Consensus sequence: CCTTCCTTCCTTCCTTCC


Dataset #: 2
Motif ID: 21
Motif name: PLAG1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0998932

Alignment:
GGGGCCCAAGGGGG
GGGGMGGG------

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC


Dataset #: 2
Motif ID: 12
Motif name: Zfx
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.10221

Alignment:
BBVGCCBVGGCCTV
----CCCRCCCC--

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB


Dataset #: 2
Motif ID: 45
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 8
Similarity score: 0.102497

Alignment:
DGVBCABTGDWGCGKRRCSR
--------GGGGMGGG----

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 2 Motif ID: 26 Motif name: ArntAhr

Original motif     Consensus sequence: YGCGTG Reverse complement motif     Consensus sequence: CACGCM

Best Matches for Top Significant Motif ID 26 (Highest to Lowest)

Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0.0308396

Alignment:
TGTGTGTGTGTKTG
------YGCGTG--

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG


Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 6
Similarity score: 0.0350575

Alignment:
TGTGTGKVTGTGTG
YGCGTG--------

Original motif     Consensus sequence: CACACAVRCACACA Reverse complement motif     Consensus sequence: TGTGTGKVTGTGTG


Dataset #: 1
Motif ID: 7
Motif name: Motif 7
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0586538

Alignment:
GGGGMGGG
YGCGTG--

Original motif     Consensus sequence: CCCRCCCC Reverse complement motif     Consensus sequence: GGGGMGGG


Dataset #: 1
Motif ID: 3
Motif name: Motif 3
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0884818

Alignment:
CCWGSCT
-CACGCM

Original motif     Consensus sequence: AGSCWGG Reverse complement motif     Consensus sequence: CCWGSCT


Dataset #: 1
Motif ID: 2
Motif name: Motif 2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 5
Similarity score: 0.563057

Alignment:
AMACA-
CACGCM

Original motif     Consensus sequence: AMACA Reverse complement motif     Consensus sequence: TGTRT


Dataset #: 1
Motif ID: 6
Motif name: Motif 6
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 5
Similarity score: 0.572774

Alignment:
-GCKGCYG
YGCGTG--

Original motif     Consensus sequence: CMGCRGC Reverse complement motif     Consensus sequence: GCKGCYG


Dataset #: 1
Motif ID: 8
Motif name: Motif 8
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 5
Similarity score: 0.581904

Alignment:
CTGGGA-
-YGCGTG

Original motif     Consensus sequence: CTGGGA Reverse complement motif     Consensus sequence: TCCCAG


Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 4
Similarity score: 1.06919

Alignment:
--KCAGAG
YGCGTG--

Original motif     Consensus sequence: CTCTGY Reverse complement motif     Consensus sequence: KCAGAG


Dataset #: 2 Motif ID: 33 Motif name: HIF1AARNT

Original motif     Consensus sequence: VBACGTGV Reverse complement motif     Consensus sequence: VCACGTBV

Best Matches for Top Significant Motif ID 33 (Highest to Lowest)

Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0745994

Alignment:
CACACAVRCACACA
-----VCACGTBV-

Original motif     Consensus sequence: CACACAVRCACACA Reverse complement motif     Consensus sequence: TGTGTGKVTGTGTG


Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0850889

Alignment:
CAYACACACACACA
---VCACGTBV---

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG


Dataset #: 1
Motif ID: 7
Motif name: Motif 7
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0.588622

Alignment:
CCCRCCCC-
-VCACGTBV

Original motif     Consensus sequence: CCCRCCCC Reverse complement motif     Consensus sequence: GGGGMGGG


Dataset #: 1
Motif ID: 3
Motif name: Motif 3
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 5
Similarity score: 1.55675

Alignment:
CCWGSCT---
--VBACGTGV

Original motif     Consensus sequence: AGSCWGG Reverse complement motif     Consensus sequence: CCWGSCT


Dataset #: 1
Motif ID: 2
Motif name: Motif 2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 5
Similarity score: 1.57238

Alignment:
TGTRT---
VBACGTGV

Original motif     Consensus sequence: AMACA Reverse complement motif     Consensus sequence: TGTRT



Significant Motifs - Global and Local Matching (Highest to Lowest)

Dataset #: 2 Motif ID: 14 Motif name: ZEB1

Original motif     Consensus sequence: CACCTD Reverse complement motif     Consensus sequence: HAGGTG

Best Matches for Significant Motif ID 14 (Highest to Lowest)

Dataset #: 2
Motif ID: 46
Motif name: RORA_1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.0141289

Alignment:
TGACCTDVWT
-CACCTD---

Original motif     Consensus sequence: AWVDAGGTCA Reverse complement motif     Consensus sequence: TGACCTDVWT


Dataset #: 2
Motif ID: 19
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.0143133

Alignment:
GGYGCTGTCCATGGTGCTGAA
----------HAGGTG-----

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 2
Motif ID: 31
Motif name: Esrrb
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0207244

Alignment:
CACGTG
CACCTD

Original motif     Consensus sequence: CACGTG Reverse complement motif     Consensus sequence: CACGTG


Dataset #: 2
Motif ID: 25
Motif name: Arnt
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0207244

Alignment:
CACGTG
HAGGTG

Original motif     Consensus sequence: CACGTG Reverse complement motif     Consensus sequence: CACGTG


Dataset #: 2
Motif ID: 43
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.0232753

Alignment:
GTTGACCTTTGACCTTT
----------CACCTD-

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT


Dataset #: 2
Motif ID: 33
Motif name: HIF1AARNT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0237889

Alignment:
VBACGTGV
-HAGGTG-

Original motif     Consensus sequence: VBACGTGV Reverse complement motif     Consensus sequence: VCACGTBV


Dataset #: 2
Motif ID: 35
Motif name: INSM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.0262123

Alignment:
TGYCAGGGGGCR
---HAGGTG---

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA


Dataset #: 2
Motif ID: 20
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 6
Similarity score: 0.0264837

Alignment:
TGRCCTKTGHCCKAB
-CACCTD--------

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 2
Motif ID: 39
Motif name: MYCMAX
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.0269744

Alignment:
RASCACGTGGT
---HAGGTG--

Original motif     Consensus sequence: RASCACGTGGT Reverse complement motif     Consensus sequence: ACCACGTGSTM


Dataset #: 2
Motif ID: 44
Motif name: NR4A2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0288897

Alignment:
GTGACCTT
--CACCTD

Original motif     Consensus sequence: AAGGTCAC Reverse complement motif     Consensus sequence: GTGACCTT


Dataset #: 1 Motif ID: 4 Motif name: Motif 4

Original motif     Consensus sequence: CTCTGY Reverse complement motif     Consensus sequence: KCAGAG

Best Matches for Significant Motif ID 4 (Highest to Lowest)

Dataset #: 2
Motif ID: 43
Motif name: NR1H2RXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.012269

Alignment:
AAAGGTCAAAGGTCAAC
-----KCAGAG------

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT


Dataset #: 2
Motif ID: 20
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.0140102

Alignment:
BTRGGDCARAGGKCA
-----KCAGAG----

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 2
Motif ID: 22
Motif name: NR2F1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0186793

Alignment:
AKGYYCAAAGRTCA
----KCAGAG----

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA


Dataset #: 2
Motif ID: 34
Motif name: HNF4A
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.020602

Alignment:
RGGBCAAAGKYCA
---KCAGAG----

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK


Dataset #: 2
Motif ID: 37
Motif name: MIZF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0221665

Alignment:
BAACGTCCGC
----CTCTGY

Original motif     Consensus sequence: BAACGTCCGC Reverse complement motif     Consensus sequence: GCGGACGTTV


Dataset #: 2
Motif ID: 35
Motif name: INSM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0255256

Alignment:
TGYCAGGGGGCR
--KCAGAG----

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA


Dataset #: 2
Motif ID: 16
Motif name: SP1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0349642

Alignment:
CCCCKCCCCC
CTCTGY----

Original motif     Consensus sequence: CCCCKCCCCC Reverse complement motif     Consensus sequence: GGGGGYGGGG


Dataset #: 2
Motif ID: 19
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0376108

Alignment:
GGYGCTGTCCATGGTGCTGAA
--CTCTGY-------------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 1
Motif ID: 8
Motif name: Motif 8
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0446026

Alignment:
TCCCAG
KCAGAG

Original motif     Consensus sequence: CTGGGA Reverse complement motif     Consensus sequence: TCCCAG


Dataset #: 2
Motif ID: 12
Motif name: Zfx
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.0448449

Alignment:
BBVGCCBVGGCCTV
---KCAGAG-----

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB


Dataset #: 1 Motif ID: 5 Motif name: Motif 5

Original motif     Consensus sequence: ATKTM Reverse complement motif     Consensus sequence: RARAT

Best Matches for Significant Motif ID 5 (Highest to Lowest)

Dataset #: 2
Motif ID: 18
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 10
Number of overlap: 5
Similarity score: 0.0256083

Alignment:
BGRRRGRGGRTGRTTYGGGG
------RARAT---------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG


Dataset #: 1
Motif ID: 10
Motif name: Motif 10
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 5
Similarity score: 0.0260117

Alignment:
AAAAAAACAAARRA
-RARAT--------

Original motif     Consensus sequence: TKKTTTGTTTTTTT Reverse complement motif     Consensus sequence: AAAAAAACAAARRA


Dataset #: 2
Motif ID: 44
Motif name: NR4A2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 5
Similarity score: 0.0276382

Alignment:
AAGGTCAC
RARAT---

Original motif     Consensus sequence: AAGGTCAC Reverse complement motif     Consensus sequence: GTGACCTT


Dataset #: 2
Motif ID: 22
Motif name: NR2F1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 5
Similarity score: 0.0279129

Alignment:
AKGYYCAAAGRTCA
-------RARAT--

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA


Dataset #: 2
Motif ID: 43
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 5
Similarity score: 0.0292478

Alignment:
AAAGGTCAAAGGTCAAC
---------ATKTM---

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT


Dataset #: 2
Motif ID: 37
Motif name: MIZF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 5
Similarity score: 0.0292478

Alignment:
BAACGTCCGC
--ATKTM---

Original motif     Consensus sequence: BAACGTCCGC Reverse complement motif     Consensus sequence: GCGGACGTTV


Dataset #: 2
Motif ID: 20
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 5
Similarity score: 0.0305369

Alignment:
TGRCCTKTGHCCKAB
----ATKTM------

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 2
Motif ID: 19
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 13
Number of overlap: 5
Similarity score: 0.0315454

Alignment:
GGYGCTGTCCATGGTGCTGAA
----ATKTM------------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 2
Motif ID: 47
Motif name: RXRRAR_DR5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 13
Number of overlap: 5
Similarity score: 0.0335956

Alignment:
RGKTCABVVRGAGGTCA
ATKTM------------

Original motif     Consensus sequence: RGKTCABVVRGAGGTCA Reverse complement motif     Consensus sequence: TGACCTCKVVBTGAYCK


Dataset #: 2
Motif ID: 46
Motif name: RORA_1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 5
Similarity score: 0.0336052

Alignment:
AWVDAGGTCA
---RARAT--

Original motif     Consensus sequence: AWVDAGGTCA Reverse complement motif     Consensus sequence: TGACCTDVWT


Dataset #: 2 Motif ID: 26 Motif name: ArntAhr

Original motif     Consensus sequence: YGCGTG Reverse complement motif     Consensus sequence: CACGCM

Best Matches for Significant Motif ID 26 (Highest to Lowest)

Dataset #: 2
Motif ID: 28
Motif name: Egr1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0

Alignment:
YCGCCCACGCH
-----CACGCM

Original motif     Consensus sequence: HGCGTGGGCGK Reverse complement motif     Consensus sequence: YCGCCCACGCH


Dataset #: 2
Motif ID: 33
Motif name: HIF1AARNT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.0112447

Alignment:
VBACGTGV
-YGCGTG-

Original motif     Consensus sequence: VBACGTGV Reverse complement motif     Consensus sequence: VCACGTBV


Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0.0308396

Alignment:
TGTGTGTGTGTKTG
------YGCGTG--

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG


Dataset #: 2
Motif ID: 31
Motif name: Esrrb
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0315972

Alignment:
CACGTG
YGCGTG

Original motif     Consensus sequence: CACGTG Reverse complement motif     Consensus sequence: CACGTG


Dataset #: 2
Motif ID: 25
Motif name: Arnt
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0315972

Alignment:
CACGTG
YGCGTG

Original motif     Consensus sequence: CACGTG Reverse complement motif     Consensus sequence: CACGTG


Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0350575

Alignment:
TGTGTGKVTGTGTG
YGCGTG--------

Original motif     Consensus sequence: CACACAVRCACACA Reverse complement motif     Consensus sequence: TGTGTGKVTGTGTG


Dataset #: 2
Motif ID: 39
Motif name: MYCMAX
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0376488

Alignment:
RASCACGTGGT
---YGCGTG--

Original motif     Consensus sequence: RASCACGTGGT Reverse complement motif     Consensus sequence: ACCACGTGSTM


Dataset #: 2
Motif ID: 40
Motif name: Mycn
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0377949

Alignment:
GCCACGTGSD
--YGCGTG--

Original motif     Consensus sequence: HSCACGTGGC Reverse complement motif     Consensus sequence: GCCACGTGSD


Dataset #: 2
Motif ID: 38
Motif name: Myc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0399214

Alignment:
DCCACGTGCV
--YGCGTG--

Original motif     Consensus sequence: VGCACGTGGH Reverse complement motif     Consensus sequence: DCCACGTGCV


Dataset #: 2
Motif ID: 18
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.0433081

Alignment:
BGRRRGRGGRTGRTTYGGGG
--------YGCGTG------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG


Dataset #: 1 Motif ID: 6 Motif name: Motif 6

Original motif     Consensus sequence: CMGCRGC Reverse complement motif     Consensus sequence: GCKGCYG

Best Matches for Significant Motif ID 6 (Highest to Lowest)

Dataset #: 2
Motif ID: 19
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 13
Number of overlap: 7
Similarity score: 0.0205607

Alignment:
GGYGCTGTCCATGGTGCTGAA
------------GCKGCYG--

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 2
Motif ID: 37
Motif name: MIZF
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0322623

Alignment:
GCGGACGTTV
GCKGCYG---

Original motif     Consensus sequence: BAACGTCCGC Reverse complement motif     Consensus sequence: GCGGACGTTV


Dataset #: 2
Motif ID: 12
Motif name: Zfx
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0.038091

Alignment:
BBVGCCBVGGCCTV
----CMGCRGC---

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB


Dataset #: 2
Motif ID: 15
Motif name: TFAP2A
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0.0393168

Alignment:
SCMVBBGGC
--CMGCRGC

Original motif     Consensus sequence: GCCBBVRGS Reverse complement motif     Consensus sequence: SCMVBBGGC


Dataset #: 1
Motif ID: 7
Motif name: Motif 7
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0.0443244

Alignment:
CCCRCCCC
-CMGCRGC

Original motif     Consensus sequence: CCCRCCCC Reverse complement motif     Consensus sequence: GGGGMGGG


Dataset #: 2
Motif ID: 45
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 7
Similarity score: 0.0448462

Alignment:
MSGKKRCGCWDCABTGBBCD
-------GCKGCYG------

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 2
Motif ID: 28
Motif name: Egr1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 7
Similarity score: 0.0453576

Alignment:
HGCGTGGGCGK
---GCKGCYG-

Original motif     Consensus sequence: HGCGTGGGCGK Reverse complement motif     Consensus sequence: YCGCCCACGCH


Dataset #: 2
Motif ID: 36
Motif name: Klf4
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0.0476958

Alignment:
GCCYCMCCCD
-CMGCRGC--

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD


Dataset #: 2
Motif ID: 16
Motif name: SP1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0490991

Alignment:
GGGGGYGGGG
GCKGCYG---

Original motif     Consensus sequence: CCCCKCCCCC Reverse complement motif     Consensus sequence: GGGGGYGGGG


Dataset #: 2
Motif ID: 18
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.0498726

Alignment:
BGRRRGRGGRTGRTTYGGGG
-----GCKGCYG--------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG


Dataset #: 1 Motif ID: 2 Motif name: Motif 2

Original motif     Consensus sequence: AMACA Reverse complement motif     Consensus sequence: TGTRT

Best Matches for Significant Motif ID 2 (Highest to Lowest)

Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 5
Similarity score: 0

Alignment:
CAYACACACACACA
-----AMACA----

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG


Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 5
Similarity score: 0.0040753

Alignment:
CACACAVRCACACA
---------AMACA

Original motif     Consensus sequence: CACACAVRCACACA Reverse complement motif     Consensus sequence: TGTGTGKVTGTGTG


Dataset #: 2
Motif ID: 18
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 11
Number of overlap: 5
Similarity score: 0.0243918

Alignment:
CCCCMAAMCAMCCMCMMMCV
-----AMACA----------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG


Dataset #: 1
Motif ID: 10
Motif name: Motif 10
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 5
Similarity score: 0.0394919

Alignment:
AAAAAAACAAARRA
----AMACA-----

Original motif     Consensus sequence: TKKTTTGTTTTTTT Reverse complement motif     Consensus sequence: AAAAAAACAAARRA


Dataset #: 2
Motif ID: 24
Motif name: Ar
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 5
Similarity score: 0.0429089

Alignment:
HWDAGHACRHHVTGTHCCHVMV
----AMACA-------------

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH


Dataset #: 2
Motif ID: 20
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 5
Similarity score: 0.0595073

Alignment:
TGRCCTKTGHCCKAB
-----TGTRT-----

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 2
Motif ID: 26
Motif name: ArntAhr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 5
Similarity score: 0.0600161

Alignment:
YGCGTG
TGTRT-

Original motif     Consensus sequence: YGCGTG Reverse complement motif     Consensus sequence: CACGCM


Dataset #: 2
Motif ID: 45
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 11
Number of overlap: 5
Similarity score: 0.0620995

Alignment:
MSGKKRCGCWDCABTGBBCD
-----AMACA----------

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 2
Motif ID: 22
Motif name: NR2F1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 5
Similarity score: 0.0650242

Alignment:
AKGYYCAAAGRTCA
------AMACA---

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA


Dataset #: 2
Motif ID: 35
Motif name: INSM1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 5
Similarity score: 0.0670984

Alignment:
MGCCCCCTGMCA
-------AMACA

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA


Dataset #: 2 Motif ID: 23 Motif name: MZF1_1-4

Original motif     Consensus sequence: BGGGGA Reverse complement motif     Consensus sequence: TCCCCV

Best Matches for Significant Motif ID 23 (Highest to Lowest)

Dataset #: 2
Motif ID: 35
Motif name: INSM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0276389

Alignment:
MGCCCCCTGMCA
--TCCCCV----

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA


Dataset #: 2
Motif ID: 41
Motif name: MZF1_5-13
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.0314583

Alignment:
BKAGGGGDAD
---BGGGGA-

Original motif     Consensus sequence: BKAGGGGDAD Reverse complement motif     Consensus sequence: BTHCCCCTYB


Dataset #: 2
Motif ID: 36
Motif name: Klf4
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0406514

Alignment:
GCCYCMCCCD
TCCCCV----

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD


Dataset #: 2
Motif ID: 21
Motif name: PLAG1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 6
Similarity score: 0.0412963

Alignment:
GGGGCCCAAGGGGG
--------BGGGGA

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC


Dataset #: 1
Motif ID: 8
Motif name: Motif 8
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0426517

Alignment:
TCCCAG
TCCCCV

Original motif     Consensus sequence: CTGGGA Reverse complement motif     Consensus sequence: TCCCAG


Dataset #: 2
Motif ID: 16
Motif name: SP1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.0464881

Alignment:
GGGGGYGGGG
----BGGGGA

Original motif     Consensus sequence: CCCCKCCCCC Reverse complement motif     Consensus sequence: GGGGGYGGGG


Dataset #: 2
Motif ID: 18
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.0493561

Alignment:
CCCCMAAMCAMCCMCMMMCV
----TCCCCV----------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG


Dataset #: 2
Motif ID: 42
Motif name: NFKB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0521759

Alignment:
GGGGRTTCCCC
-----TCCCCV

Original motif     Consensus sequence: GGGGRTTCCCC Reverse complement motif     Consensus sequence: GGGGAAKCCCC


Dataset #: 2
Motif ID: 19
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 11
Number of overlap: 6
Similarity score: 0.0581528

Alignment:
GGYGCTGTCCATGGTGCTGAA
-----TCCCCV----------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 2
Motif ID: 24
Motif name: Ar
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 15
Number of overlap: 6
Similarity score: 0.0585417

Alignment:
HWDAGHACRHHVTGTHCCHVMV
--------------TCCCCV--

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH


Dataset #: 2 Motif ID: 44 Motif name: NR4A2

Original motif     Consensus sequence: AAGGTCAC Reverse complement motif     Consensus sequence: GTGACCTT

Best Matches for Significant Motif ID 44 (Highest to Lowest)

Dataset #: 2
Motif ID: 43
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0167759

Alignment:
AAAGGTCAAAGGTCAAC
-AAGGTCAC--------

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT


Dataset #: 2
Motif ID: 29
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0195235

Alignment:
VDBHMAGGTCACCCTGACCY
----AAGGTCAC--------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV


Dataset #: 2
Motif ID: 30
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0198372

Alignment:
BAGGYCABHBTGACCKHV
---------GTGACCTT-

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV


Dataset #: 2
Motif ID: 24
Motif name: Ar
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 13
Number of overlap: 8
Similarity score: 0.0487608

Alignment:
VRVDGGHACAVDDKGTHCTDWH
------------GTGACCTT--

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH


Dataset #: 2
Motif ID: 20
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0.0495607

Alignment:
BTRGGDCARAGGKCA
-AAGGTCAC------

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 2
Motif ID: 22
Motif name: NR2F1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0564874

Alignment:
AKGYYCAAAGRTCA
------AAGGTCAC

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA


Dataset #: 2
Motif ID: 19
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0594649

Alignment:
GGYGCTGTCCATGGTGCTGAA
----GTGACCTT---------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 2
Motif ID: 12
Motif name: Zfx
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0631514

Alignment:
BBVGCCBVGGCCTV
GTGACCTT------

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB


Dataset #: 2
Motif ID: 18
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0720656

Alignment:
BGRRRGRGGRTGRTTYGGGG
---------GTGACCTT---

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG


Dataset #: 2
Motif ID: 48
Motif name: Tcfcp2l1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0740998

Alignment:
CKGGDTBDMMCTGG
-----GTGACCTT-

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG


Dataset #: 2 Motif ID: 15 Motif name: TFAP2A

Original motif     Consensus sequence: GCCBBVRGS Reverse complement motif     Consensus sequence: SCMVBBGGC

Best Matches for Significant Motif ID 15 (Highest to Lowest)

Dataset #: 2
Motif ID: 12
Motif name: Zfx
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 9
Similarity score: 0.0131247

Alignment:
BBVGCCBVGGCCTV
---SCMVBBGGC--

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB


Dataset #: 2
Motif ID: 21
Motif name: PLAG1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 9
Similarity score: 0.0414588

Alignment:
GGGGCCCAAGGGGG
---GCCBBVRGS--

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC


Dataset #: 2
Motif ID: 13
Motif name: Zfp423
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 9
Similarity score: 0.0438157

Alignment:
GYRYCCMTKGGYRSC
---SCMVBBGGC---

Original motif     Consensus sequence: GSMMCCYARGGKKKC Reverse complement motif     Consensus sequence: GYRYCCMTKGGYRSC


Dataset #: 2
Motif ID: 29
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 9
Similarity score: 0.0450672

Alignment:
MGGTCAGGGTGACCTRDBHV
----------GCCBBVRGS-

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV


Dataset #: 2
Motif ID: 30
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 9
Similarity score: 0.0531668

Alignment:
BAGGYCABHBTGACCKHV
-----SCMVBBGGC----

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV


Dataset #: 2
Motif ID: 40
Motif name: Mycn
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 9
Similarity score: 0.0550803

Alignment:
HSCACGTGGC
-SCMVBBGGC

Original motif     Consensus sequence: HSCACGTGGC Reverse complement motif     Consensus sequence: GCCACGTGSD


Dataset #: 2
Motif ID: 45
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 9
Similarity score: 0.0581255

Alignment:
MSGKKRCGCWDCABTGBBCD
-------GCCBBVRGS----

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 2
Motif ID: 47
Motif name: RXRRAR_DR5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 9
Similarity score: 0.0606062

Alignment:
RGKTCABVVRGAGGTCA
--GCCBBVRGS------

Original motif     Consensus sequence: RGKTCABVVRGAGGTCA Reverse complement motif     Consensus sequence: TGACCTCKVVBTGAYCK


Dataset #: 2
Motif ID: 38
Motif name: Myc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 9
Similarity score: 0.0613455

Alignment:
VGCACGTGGH
-SCMVBBGGC

Original motif     Consensus sequence: VGCACGTGGH Reverse complement motif     Consensus sequence: DCCACGTGCV


Dataset #: 2
Motif ID: 48
Motif name: Tcfcp2l1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 9
Similarity score: 0.0631412

Alignment:
CCAGYYHVADCCRG
---GCCBBVRGS--

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG


Dataset #: 2 Motif ID: 25 Motif name: Arnt

Original motif     Consensus sequence: CACGTG Reverse complement motif     Consensus sequence: CACGTG

Best Matches for Significant Motif ID 25 (Highest to Lowest)

Dataset #: 2
Motif ID: 31
Motif name: Esrrb
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0

Alignment:
CACGTG
CACGTG

Original motif     Consensus sequence: CACGTG Reverse complement motif     Consensus sequence: CACGTG


Dataset #: 2
Motif ID: 39
Motif name: MYCMAX
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.0143849

Alignment:
RASCACGTGGT
---CACGTG--

Original motif     Consensus sequence: RASCACGTGGT Reverse complement motif     Consensus sequence: ACCACGTGSTM


Dataset #: 2
Motif ID: 38
Motif name: Myc
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0267529

Alignment:
DCCACGTGCV
--CACGTG--

Original motif     Consensus sequence: VGCACGTGGH Reverse complement motif     Consensus sequence: DCCACGTGCV


Dataset #: 2
Motif ID: 40
Motif name: Mycn
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0272641

Alignment:
HSCACGTGGC
--CACGTG--

Original motif     Consensus sequence: HSCACGTGGC Reverse complement motif     Consensus sequence: GCCACGTGSD


Dataset #: 2
Motif ID: 33
Motif name: HIF1AARNT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.0347756

Alignment:
VBACGTGV
-CACGTG-

Original motif     Consensus sequence: VBACGTGV Reverse complement motif     Consensus sequence: VCACGTBV


Dataset #: 2
Motif ID: 26
Motif name: ArntAhr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.065625

Alignment:
YGCGTG
CACGTG

Original motif     Consensus sequence: YGCGTG Reverse complement motif     Consensus sequence: CACGCM


Dataset #: 2
Motif ID: 14
Motif name: ZEB1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0689533

Alignment:
HAGGTG
CACGTG

Original motif     Consensus sequence: CACCTD Reverse complement motif     Consensus sequence: HAGGTG


Dataset #: 2
Motif ID: 28
Motif name: Egr1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0784722

Alignment:
HGCGTGGGCGK
CACGTG-----

Original motif     Consensus sequence: HGCGTGGGCGK Reverse complement motif     Consensus sequence: YCGCCCACGCH


Dataset #: 2
Motif ID: 37
Motif name: MIZF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.0854167

Alignment:
BAACGTCCGC
-CACGTG---

Original motif     Consensus sequence: BAACGTCCGC Reverse complement motif     Consensus sequence: GCGGACGTTV


Dataset #: 2
Motif ID: 21
Motif name: PLAG1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.105093

Alignment:
GGGGCCCAAGGGGG
------CACGTG--

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC



Best Matches for Each Motif (Highest to Lowest)

Dataset #: 1 Motif ID: 1 Motif name: Motif 1

Original motif     Consensus sequence: RGGAAR Reverse complement motif     Consensus sequence: MTTCCK

Best Matches for Motif ID 1 (Highest to Lowest)

Dataset #: 2
Motif ID: 32
Motif name: EWSR1-FLI1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 12
Number of overlap: 6
Similarity score: 0.0146511

Alignment:
GGAAGGAAGGAAGGAAGG
-----------RGGAAR-

Original motif     Consensus sequence: GGAAGGAAGGAAGGAAGG Reverse complement motif     Consensus sequence: CCTTCCTTCCTTCCTTCC


Dataset #: 2
Motif ID: 37
Motif name: MIZF
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.0608243

Alignment:
BAACGTCCGC
---MTTCCK-

Original motif     Consensus sequence: BAACGTCCGC Reverse complement motif     Consensus sequence: GCGGACGTTV


Dataset #: 2
Motif ID: 41
Motif name: MZF1_5-13
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0753789

Alignment:
BKAGGGGDAD
----RGGAAR

Original motif     Consensus sequence: BKAGGGGDAD Reverse complement motif     Consensus sequence: BTHCCCCTYB


Dataset #: 2
Motif ID: 42
Motif name: NFKB1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0757695

Alignment:
GGGGAAKCCCC
-RGGAAR----

Original motif     Consensus sequence: GGGGRTTCCCC Reverse complement motif     Consensus sequence: GGGGAAKCCCC


Dataset #: 2
Motif ID: 20
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.0800484

Alignment:
BTRGGDCARAGGKCA
---RGGAAR------

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 1
Motif ID: 7
Motif name: Motif 7
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0827261

Alignment:
GGGGMGGG
-RGGAAR-

Original motif     Consensus sequence: CCCRCCCC Reverse complement motif     Consensus sequence: GGGGMGGG


Dataset #: 2
Motif ID: 19
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.0829223

Alignment:
TTCAGCACCATGGACAGCKCC
----------RGGAAR-----

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 2
Motif ID: 35
Motif name: INSM1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0.0832926

Alignment:
TGYCAGGGGGCR
------RGGAAR

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA


Dataset #: 2
Motif ID: 18
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.0835516

Alignment:
BGRRRGRGGRTGRTTYGGGG
----RGGAAR----------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG


Dataset #: 2
Motif ID: 24
Motif name: Ar
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.0836451

Alignment:
HWDAGHACRHHVTGTHCCHVMV
---RGGAAR-------------

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH


Dataset #: 2
Motif ID: 27
Motif name: E2F1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0842331

Alignment:
GCGCSAAA
--RGGAAR

Original motif     Consensus sequence: TTTSGCGC Reverse complement motif     Consensus sequence: GCGCSAAA


Dataset #: 1 Motif ID: 2 Motif name: Motif 2

Original motif     Consensus sequence: AMACA Reverse complement motif     Consensus sequence: TGTRT

Best Matches for Motif ID 2 (Highest to Lowest)

Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 5
Similarity score: 0

Alignment:
CAYACACACACACA
-----AMACA----

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG


Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 5
Similarity score: 0.0040753

Alignment:
CACACAVRCACACA
---------AMACA

Original motif     Consensus sequence: CACACAVRCACACA Reverse complement motif     Consensus sequence: TGTGTGKVTGTGTG


Dataset #: 2
Motif ID: 18
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 11
Number of overlap: 5
Similarity score: 0.0243918

Alignment:
CCCCMAAMCAMCCMCMMMCV
-----AMACA----------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG


Dataset #: 1
Motif ID: 10
Motif name: Motif 10
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 5
Similarity score: 0.0394919

Alignment:
AAAAAAACAAARRA
----AMACA-----

Original motif     Consensus sequence: TKKTTTGTTTTTTT Reverse complement motif     Consensus sequence: AAAAAAACAAARRA


Dataset #: 2
Motif ID: 24
Motif name: Ar
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 5
Similarity score: 0.0429089

Alignment:
HWDAGHACRHHVTGTHCCHVMV
----AMACA-------------

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH


Dataset #: 2
Motif ID: 20
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 5
Similarity score: 0.0595073

Alignment:
TGRCCTKTGHCCKAB
-----TGTRT-----

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 2
Motif ID: 26
Motif name: ArntAhr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 5
Similarity score: 0.0600161

Alignment:
YGCGTG
TGTRT-

Original motif     Consensus sequence: YGCGTG Reverse complement motif     Consensus sequence: CACGCM


Dataset #: 2
Motif ID: 45
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 11
Number of overlap: 5
Similarity score: 0.0620995

Alignment:
MSGKKRCGCWDCABTGBBCD
-----AMACA----------

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 2
Motif ID: 22
Motif name: NR2F1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 5
Similarity score: 0.0650242

Alignment:
AKGYYCAAAGRTCA
------AMACA---

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA


Dataset #: 2
Motif ID: 35
Motif name: INSM1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 5
Similarity score: 0.0670984

Alignment:
MGCCCCCTGMCA
-------AMACA

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA


Dataset #: 1 Motif ID: 3 Motif name: Motif 3

Original motif     Consensus sequence: AGSCWGG Reverse complement motif     Consensus sequence: CCWGSCT

Best Matches for Motif ID 3 (Highest to Lowest)

Dataset #: 2
Motif ID: 32
Motif name: EWSR1-FLI1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 7
Similarity score: 0.0395671

Alignment:
GGAAGGAAGGAAGGAAGG
-------AGSCWGG----

Original motif     Consensus sequence: GGAAGGAAGGAAGGAAGG Reverse complement motif     Consensus sequence: CCTTCCTTCCTTCCTTCC


Dataset #: 2
Motif ID: 35
Motif name: INSM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.0494688

Alignment:
MGCCCCCTGMCA
-----CCWGSCT

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA


Dataset #: 2
Motif ID: 48
Motif name: Tcfcp2l1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0669354

Alignment:
CCAGYYHVADCCRG
CCWGSCT-------

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG


Dataset #: 2
Motif ID: 19
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 7
Similarity score: 0.0693747

Alignment:
TTCAGCACCATGGACAGCKCC
------AGSCWGG--------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 2
Motif ID: 16
Motif name: SP1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.0695377

Alignment:
CCCCKCCCCC
-CCWGSCT--

Original motif     Consensus sequence: CCCCKCCCCC Reverse complement motif     Consensus sequence: GGGGGYGGGG


Dataset #: 2
Motif ID: 12
Motif name: Zfx
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 7
Similarity score: 0.0720685

Alignment:
BBVGCCBVGGCCTV
------CCWGSCT-

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB


Dataset #: 1
Motif ID: 7
Motif name: Motif 7
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0742342

Alignment:
CCCRCCCC
CCWGSCT-

Original motif     Consensus sequence: CCCRCCCC Reverse complement motif     Consensus sequence: GGGGMGGG


Dataset #: 2
Motif ID: 29
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 7
Similarity score: 0.0771405

Alignment:
MGGTCAGGGTGACCTRDBHV
------------CCWGSCT-

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV


Dataset #: 2
Motif ID: 46
Motif name: RORA_1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0.0772276

Alignment:
TGACCTDVWT
---CCWGSCT

Original motif     Consensus sequence: AWVDAGGTCA Reverse complement motif     Consensus sequence: TGACCTDVWT


Dataset #: 2
Motif ID: 36
Motif name: Klf4
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0.0798994

Alignment:
GCCYCMCCCD
---CCWGSCT

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD


Dataset #: 1 Motif ID: 4 Motif name: Motif 4

Original motif     Consensus sequence: CTCTGY Reverse complement motif     Consensus sequence: KCAGAG

Best Matches for Motif ID 4 (Highest to Lowest)

Dataset #: 2
Motif ID: 43
Motif name: NR1H2RXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.012269

Alignment:
AAAGGTCAAAGGTCAAC
-----KCAGAG------

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT


Dataset #: 2
Motif ID: 20
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.0140102

Alignment:
BTRGGDCARAGGKCA
-----KCAGAG----

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 2
Motif ID: 22
Motif name: NR2F1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0186793

Alignment:
AKGYYCAAAGRTCA
----KCAGAG----

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA


Dataset #: 2
Motif ID: 34
Motif name: HNF4A
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.020602

Alignment:
RGGBCAAAGKYCA
---KCAGAG----

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK


Dataset #: 2
Motif ID: 37
Motif name: MIZF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0221665

Alignment:
BAACGTCCGC
----CTCTGY

Original motif     Consensus sequence: BAACGTCCGC Reverse complement motif     Consensus sequence: GCGGACGTTV


Dataset #: 2
Motif ID: 35
Motif name: INSM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0255256

Alignment:
TGYCAGGGGGCR
--KCAGAG----

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA


Dataset #: 2
Motif ID: 16
Motif name: SP1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0349642

Alignment:
CCCCKCCCCC
CTCTGY----

Original motif     Consensus sequence: CCCCKCCCCC Reverse complement motif     Consensus sequence: GGGGGYGGGG


Dataset #: 2
Motif ID: 19
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0376108

Alignment:
GGYGCTGTCCATGGTGCTGAA
--CTCTGY-------------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 1
Motif ID: 8
Motif name: Motif 8
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0446026

Alignment:
TCCCAG
KCAGAG

Original motif     Consensus sequence: CTGGGA Reverse complement motif     Consensus sequence: TCCCAG


Dataset #: 2
Motif ID: 12
Motif name: Zfx
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.0448449

Alignment:
BBVGCCBVGGCCTV
---KCAGAG-----

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB


Dataset #: 1 Motif ID: 5 Motif name: Motif 5

Original motif     Consensus sequence: ATKTM Reverse complement motif     Consensus sequence: RARAT

Best Matches for Motif ID 5 (Highest to Lowest)

Dataset #: 2
Motif ID: 18
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 10
Number of overlap: 5
Similarity score: 0.0256083

Alignment:
BGRRRGRGGRTGRTTYGGGG
------RARAT---------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG


Dataset #: 1
Motif ID: 10
Motif name: Motif 10
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 5
Similarity score: 0.0260117

Alignment:
AAAAAAACAAARRA
-RARAT--------

Original motif     Consensus sequence: TKKTTTGTTTTTTT Reverse complement motif     Consensus sequence: AAAAAAACAAARRA


Dataset #: 2
Motif ID: 44
Motif name: NR4A2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 5
Similarity score: 0.0276382

Alignment:
AAGGTCAC
RARAT---

Original motif     Consensus sequence: AAGGTCAC Reverse complement motif     Consensus sequence: GTGACCTT


Dataset #: 2
Motif ID: 22
Motif name: NR2F1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 5
Similarity score: 0.0279129

Alignment:
AKGYYCAAAGRTCA
-------RARAT--

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA


Dataset #: 2
Motif ID: 43
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 5
Similarity score: 0.0292478

Alignment:
AAAGGTCAAAGGTCAAC
---------ATKTM---

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT


Dataset #: 2
Motif ID: 37
Motif name: MIZF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 5
Similarity score: 0.0292478

Alignment:
BAACGTCCGC
--ATKTM---

Original motif     Consensus sequence: BAACGTCCGC Reverse complement motif     Consensus sequence: GCGGACGTTV


Dataset #: 2
Motif ID: 20
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 5
Similarity score: 0.0305369

Alignment:
TGRCCTKTGHCCKAB
----ATKTM------

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 2
Motif ID: 19
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 13
Number of overlap: 5
Similarity score: 0.0315454

Alignment:
GGYGCTGTCCATGGTGCTGAA
----ATKTM------------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 2
Motif ID: 47
Motif name: RXRRAR_DR5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 13
Number of overlap: 5
Similarity score: 0.0335956

Alignment:
RGKTCABVVRGAGGTCA
ATKTM------------

Original motif     Consensus sequence: RGKTCABVVRGAGGTCA Reverse complement motif     Consensus sequence: TGACCTCKVVBTGAYCK


Dataset #: 2
Motif ID: 46
Motif name: RORA_1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 5
Similarity score: 0.0336052

Alignment:
AWVDAGGTCA
---RARAT--

Original motif     Consensus sequence: AWVDAGGTCA Reverse complement motif     Consensus sequence: TGACCTDVWT


Dataset #: 1 Motif ID: 6 Motif name: Motif 6

Original motif     Consensus sequence: CMGCRGC Reverse complement motif     Consensus sequence: GCKGCYG

Best Matches for Motif ID 6 (Highest to Lowest)

Dataset #: 2
Motif ID: 19
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 13
Number of overlap: 7
Similarity score: 0.0205607

Alignment:
GGYGCTGTCCATGGTGCTGAA
------------GCKGCYG--

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 2
Motif ID: 37
Motif name: MIZF
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0322623

Alignment:
GCGGACGTTV
GCKGCYG---

Original motif     Consensus sequence: BAACGTCCGC Reverse complement motif     Consensus sequence: GCGGACGTTV


Dataset #: 2
Motif ID: 12
Motif name: Zfx
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0.038091

Alignment:
BBVGCCBVGGCCTV
----CMGCRGC---

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB


Dataset #: 2
Motif ID: 15
Motif name: TFAP2A
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0.0393168

Alignment:
SCMVBBGGC
--CMGCRGC

Original motif     Consensus sequence: GCCBBVRGS Reverse complement motif     Consensus sequence: SCMVBBGGC


Dataset #: 1
Motif ID: 7
Motif name: Motif 7
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0.0443244

Alignment:
CCCRCCCC
-CMGCRGC

Original motif     Consensus sequence: CCCRCCCC Reverse complement motif     Consensus sequence: GGGGMGGG


Dataset #: 2
Motif ID: 45
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 7
Similarity score: 0.0448462

Alignment:
MSGKKRCGCWDCABTGBBCD
-------GCKGCYG------

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 2
Motif ID: 28
Motif name: Egr1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 7
Similarity score: 0.0453576

Alignment:
HGCGTGGGCGK
---GCKGCYG-

Original motif     Consensus sequence: HGCGTGGGCGK Reverse complement motif     Consensus sequence: YCGCCCACGCH


Dataset #: 2
Motif ID: 36
Motif name: Klf4
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0.0476958

Alignment:
GCCYCMCCCD
-CMGCRGC--

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD


Dataset #: 2
Motif ID: 16
Motif name: SP1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0490991

Alignment:
GGGGGYGGGG
GCKGCYG---

Original motif     Consensus sequence: CCCCKCCCCC Reverse complement motif     Consensus sequence: GGGGGYGGGG


Dataset #: 2
Motif ID: 18
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.0498726

Alignment:
BGRRRGRGGRTGRTTYGGGG
-----GCKGCYG--------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG


Dataset #: 1 Motif ID: 7 Motif name: Motif 7

Original motif     Consensus sequence: CCCRCCCC Reverse complement motif     Consensus sequence: GGGGMGGG

Best Matches for Motif ID 7 (Highest to Lowest)

Dataset #: 2
Motif ID: 16
Motif name: SP1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0423611

Alignment:
CCCCKCCCCC
-CCCRCCCC-

Original motif     Consensus sequence: CCCCKCCCCC Reverse complement motif     Consensus sequence: GGGGGYGGGG


Dataset #: 2
Motif ID: 36
Motif name: Klf4
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0461644

Alignment:
DGGGYGKGGC
GGGGMGGG--

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD


Dataset #: 2
Motif ID: 28
Motif name: Egr1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0650374

Alignment:
YCGCCCACGCH
---CCCRCCCC

Original motif     Consensus sequence: HGCGTGGGCGK Reverse complement motif     Consensus sequence: YCGCCCACGCH


Dataset #: 2
Motif ID: 18
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0.076401

Alignment:
CCCCMAAMCAMCCMCMMMCV
------CCCRCCCC------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG


Dataset #: 2
Motif ID: 42
Motif name: NFKB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0893429

Alignment:
GGGGAAKCCCC
GGGGMGGG---

Original motif     Consensus sequence: GGGGRTTCCCC Reverse complement motif     Consensus sequence: GGGGAAKCCCC


Dataset #: 2
Motif ID: 35
Motif name: INSM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0936832

Alignment:
TGYCAGGGGGCR
GGGGMGGG----

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA


Dataset #: 2
Motif ID: 32
Motif name: EWSR1-FLI1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0950969

Alignment:
GGAAGGAAGGAAGGAAGG
------GGGGMGGG----

Original motif     Consensus sequence: GGAAGGAAGGAAGGAAGG Reverse complement motif     Consensus sequence: CCTTCCTTCCTTCCTTCC


Dataset #: 2
Motif ID: 21
Motif name: PLAG1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0998932

Alignment:
GGGGCCCAAGGGGG
GGGGMGGG------

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC


Dataset #: 2
Motif ID: 12
Motif name: Zfx
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.10221

Alignment:
BBVGCCBVGGCCTV
----CCCRCCCC--

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB


Dataset #: 2
Motif ID: 45
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 8
Similarity score: 0.102497

Alignment:
DGVBCABTGDWGCGKRRCSR
--------GGGGMGGG----

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 1 Motif ID: 8 Motif name: Motif 8

Original motif     Consensus sequence: CTGGGA Reverse complement motif     Consensus sequence: TCCCAG

Best Matches for Motif ID 8 (Highest to Lowest)

Dataset #: 2
Motif ID: 19
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 6
Similarity score: 0.0392549

Alignment:
GGYGCTGTCCATGGTGCTGAA
-------TCCCAG--------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 2
Motif ID: 23
Motif name: MZF1_1-4
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0416319

Alignment:
TCCCCV
TCCCAG

Original motif     Consensus sequence: BGGGGA Reverse complement motif     Consensus sequence: TCCCCV


Dataset #: 2
Motif ID: 18
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0509122

Alignment:
BGRRRGRGGRTGRTTYGGGG
--------------CTGGGA

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG


Dataset #: 2
Motif ID: 35
Motif name: INSM1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.0557857

Alignment:
TGYCAGGGGGCR
---CTGGGA---

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA


Dataset #: 2
Motif ID: 13
Motif name: Zfp423
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.0624145

Alignment:
GYRYCCMTKGGYRSC
---TCCCAG------

Original motif     Consensus sequence: GSMMCCYARGGKKKC Reverse complement motif     Consensus sequence: GYRYCCMTKGGYRSC


Dataset #: 2
Motif ID: 43
Motif name: NR1H2RXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.0650784

Alignment:
AAAGGTCAAAGGTCAAC
-----TCCCAG------

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT


Dataset #: 2
Motif ID: 48
Motif name: Tcfcp2l1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0663804

Alignment:
CKGGDTBDMMCTGG
CTGGGA--------

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG


Dataset #: 2
Motif ID: 28
Motif name: Egr1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0678562

Alignment:
YCGCCCACGCH
--TCCCAG---

Original motif     Consensus sequence: HGCGTGGGCGK Reverse complement motif     Consensus sequence: YCGCCCACGCH


Dataset #: 2
Motif ID: 24
Motif name: Ar
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0714107

Alignment:
HWDAGHACRHHVTGTHCCHVMV
--------------TCCCAG--

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH


Dataset #: 2
Motif ID: 12
Motif name: Zfx
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.0718041

Alignment:
BBVGCCBVGGCCTV
-----CTGGGA---

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB


Dataset #: 1 Motif ID: 9 Motif name: Motif 9

Original motif     Consensus sequence: CACACAVRCACACA Reverse complement motif     Consensus sequence: TGTGTGKVTGTGTG

Best Matches for Motif ID 9 (Highest to Lowest)

Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0170175

Alignment:
CAYACACACACACA
CACACAVRCACACA

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG


Dataset #: 2
Motif ID: 18
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0868786

Alignment:
CCCCMAAMCAMCCMCMMMCV
----CACACAVRCACACA--

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG


Dataset #: 1
Motif ID: 10
Motif name: Motif 10
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.578949

Alignment:
TKKTTTGTTTTTTT-
-TGTGTGKVTGTGTG

Original motif     Consensus sequence: TKKTTTGTTTTTTT Reverse complement motif     Consensus sequence: AAAAAAACAAARRA


Dataset #: 2
Motif ID: 17
Motif name: RXRAVDR
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 0.593978

Alignment:
-GGGTCAWBGRGTTCA
TGTGTGKVTGTGTG--

Original motif     Consensus sequence: GGGTCAWBGRGTTCA Reverse complement motif     Consensus sequence: TGAACKCBWTGACCC


Dataset #: 2
Motif ID: 24
Motif name: Ar
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 11
Number of overlap: 12
Similarity score: 1.09291

Alignment:
--VRVDGGHACAVDDKGTHCTDWH
CACACAVRCACACA----------

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH


Dataset #: 2
Motif ID: 28
Motif name: Egr1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 1.57424

Alignment:
HGCGTGGGCGK---
TGTGTGKVTGTGTG

Original motif     Consensus sequence: HGCGTGGGCGK Reverse complement motif     Consensus sequence: YCGCCCACGCH


Dataset #: 2
Motif ID: 29
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 11
Similarity score: 1.58704

Alignment:
VDBHMAGGTCACCCTGACCY---
---------CACACAVRCACACA

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV


Dataset #: 2
Motif ID: 35
Motif name: INSM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 2.08086

Alignment:
----TGYCAGGGGGCR
TGTGTGKVTGTGTG--

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA


Dataset #: 2
Motif ID: 36
Motif name: Klf4
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 2.0884

Alignment:
DGGGYGKGGC----
TGTGTGKVTGTGTG

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD


Dataset #: 2
Motif ID: 34
Motif name: HNF4A
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 2.09226

Alignment:
TGMYCTTTGBCCK----
---TGTGTGKVTGTGTG

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK


Dataset #: 1 Motif ID: 10 Motif name: Motif 10

Original motif     Consensus sequence: TKKTTTGTTTTTTT Reverse complement motif     Consensus sequence: AAAAAAACAAARRA

Best Matches for Motif ID 10 (Highest to Lowest)

Dataset #: 2
Motif ID: 32
Motif name: EWSR1-FLI1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0424269

Alignment:
GGAAGGAAGGAAGGAAGG
--AAAAAAACAAARRA--

Original motif     Consensus sequence: GGAAGGAAGGAAGGAAGG Reverse complement motif     Consensus sequence: CCTTCCTTCCTTCCTTCC


Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.529035

Alignment:
-CACACAVRCACACA
AAAAAAACAAARRA-

Original motif     Consensus sequence: CACACAVRCACACA Reverse complement motif     Consensus sequence: TGTGTGKVTGTGTG


Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.531594

Alignment:
-TGTGTGTGTGTKTG
TKKTTTGTTTTTTT-

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG


Dataset #: 2
Motif ID: 43
Motif name: NR1H2RXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 13
Similarity score: 0.535643

Alignment:
-AAAGGTCAAAGGTCAAC
AAAAAAACAAARRA----

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT


Dataset #: 2
Motif ID: 20
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 0.543043

Alignment:
-BTRGGDCARAGGKCA
AAAAAAACAAARRA--

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 2
Motif ID: 24
Motif name: Ar
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 10
Number of overlap: 13
Similarity score: 0.544053

Alignment:
VRVDGGHACAVDDKGTHCTDWH-
---------TKKTTTGTTTTTTT

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH


Dataset #: 2
Motif ID: 22
Motif name: NR2F1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 1.04059

Alignment:
--AKGYYCAAAGRTCA
AAAAAAACAAARRA--

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA


Dataset #: 2
Motif ID: 34
Motif name: HNF4A
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 1.53429

Alignment:
---RGGBCAAAGKYCA
AAAAAAACAAARRA--

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK


Dataset #: 2
Motif ID: 45
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 10
Number of overlap: 11
Similarity score: 1.54022

Alignment:
---DGVBCABTGDWGCGKRRCSR
AAAAAAACAAARRA---------

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 2
Motif ID: 18
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 11
Number of overlap: 10
Similarity score: 2.0484

Alignment:
----CCCCMAAMCAMCCMCMMMCV
AAAAAAACAAARRA----------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG


Dataset #: 1 Motif ID: 11 Motif name: Motif 11

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG

Best Matches for Motif ID 11 (Highest to Lowest)

Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0170175

Alignment:
CACACAVRCACACA
CAYACACACACACA

Original motif     Consensus sequence: CACACAVRCACACA Reverse complement motif     Consensus sequence: TGTGTGKVTGTGTG


Dataset #: 2
Motif ID: 18
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0837439

Alignment:
CCCCMAAMCAMCCMCMMMCV
----CAYACACACACACA--

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG


Dataset #: 1
Motif ID: 10
Motif name: Motif 10
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.581509

Alignment:
AAAAAAACAAARRA-
-CAYACACACACACA

Original motif     Consensus sequence: TKKTTTGTTTTTTT Reverse complement motif     Consensus sequence: AAAAAAACAAARRA


Dataset #: 2
Motif ID: 35
Motif name: INSM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 1.09362

Alignment:
--TGYCAGGGGGCR
TGTGTGTGTGTKTG

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA


Dataset #: 2
Motif ID: 28
Motif name: Egr1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 1.56977

Alignment:
HGCGTGGGCGK---
TGTGTGTGTGTKTG

Original motif     Consensus sequence: HGCGTGGGCGK Reverse complement motif     Consensus sequence: YCGCCCACGCH


Dataset #: 2
Motif ID: 29
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 11
Similarity score: 1.59795

Alignment:
VDBHMAGGTCACCCTGACCY---
---------CAYACACACACACA

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV


Dataset #: 2
Motif ID: 36
Motif name: Klf4
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 2.08683

Alignment:
DGGGYGKGGC----
TGTGTGTGTGTKTG

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD


Dataset #: 2
Motif ID: 16
Motif name: SP1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 9
Similarity score: 2.59204

Alignment:
-----GGGGGYGGGG
TGTGTGTGTGTKTG-

Original motif     Consensus sequence: CCCCKCCCCC Reverse complement motif     Consensus sequence: GGGGGYGGGG


Dataset #: 1
Motif ID: 7
Motif name: Motif 7
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 3.09205

Alignment:
------CCCRCCCC
CAYACACACACACA

Original motif     Consensus sequence: CCCRCCCC Reverse complement motif     Consensus sequence: GGGGMGGG


Dataset #: 2
Motif ID: 33
Motif name: HIF1AARNT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 7
Similarity score: 3.58699

Alignment:
-------VBACGTGV
TGTGTGTGTGTKTG-

Original motif     Consensus sequence: VBACGTGV Reverse complement motif     Consensus sequence: VCACGTBV


Dataset #: 2 Motif ID: 12 Motif name: Zfx

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB

Best Matches for Motif ID 12 (Highest to Lowest)

Dataset #: 2
Motif ID: 45
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 14
Similarity score: 0.0611182

Alignment:
DGVBCABTGDWGCGKRRCSR
--BBVGCCBVGGCCTV----

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 2
Motif ID: 30
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0635714

Alignment:
BAGGYCABHBTGACCKHV
---BBVGCCBVGGCCTV-

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV


Dataset #: 2
Motif ID: 29
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 14
Similarity score: 0.0722733

Alignment:
MGGTCAGGGTGACCTRDBHV
--BBVGCCBVGGCCTV----

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV


Dataset #: 2
Motif ID: 48
Motif name: Tcfcp2l1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0732898

Alignment:
CCAGYYHVADCCRG
BBVGCCBVGGCCTV

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG


Dataset #: 2
Motif ID: 13
Motif name: Zfp423
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0747812

Alignment:
GYRYCCMTKGGYRSC
-VAGGCCBBGGCVBB

Original motif     Consensus sequence: GSMMCCYARGGKKKC Reverse complement motif     Consensus sequence: GYRYCCMTKGGYRSC


Dataset #: 2
Motif ID: 21
Motif name: PLAG1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0796879

Alignment:
CCCCCTTGGGCCCC
BBVGCCBVGGCCTV

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC


Dataset #: 2
Motif ID: 19
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 14
Similarity score: 0.0812253

Alignment:
GGYGCTGTCCATGGTGCTGAA
----VAGGCCBBGGCVBB---

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 2
Motif ID: 24
Motif name: Ar
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.0832838

Alignment:
HWDAGHACRHHVTGTHCCHVMV
-----VAGGCCBBGGCVBB---

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH


Dataset #: 2
Motif ID: 20
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0836605

Alignment:
TGRCCTKTGHCCKAB
BBVGCCBVGGCCTV-

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 2
Motif ID: 47
Motif name: RXRRAR_DR5
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 13
Similarity score: 0.570818

Alignment:
TGACCTCKVVBTGAYCK-
----BBVGCCBVGGCCTV

Original motif     Consensus sequence: RGKTCABVVRGAGGTCA Reverse complement motif     Consensus sequence: TGACCTCKVVBTGAYCK


Dataset #: 2 Motif ID: 13 Motif name: Zfp423

Original motif     Consensus sequence: GSMMCCYARGGKKKC Reverse complement motif     Consensus sequence: GYRYCCMTKGGYRSC

Best Matches for Motif ID 13 (Highest to Lowest)

Dataset #: 2
Motif ID: 24
Motif name: Ar
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 15
Similarity score: 0.0400042

Alignment:
HWDAGHACRHHVTGTHCCHVMV
---GSMMCCYARGGKKKC----

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH


Dataset #: 2
Motif ID: 45
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 15
Similarity score: 0.0400673

Alignment:
DGVBCABTGDWGCGKRRCSR
--GSMMCCYARGGKKKC---

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 2
Motif ID: 19
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 15
Similarity score: 0.0410001

Alignment:
TTCAGCACCATGGACAGCKCC
---GYRYCCMTKGGYRSC---

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 2
Motif ID: 17
Motif name: RXRAVDR
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0465067

Alignment:
GGGTCAWBGRGTTCA
GYRYCCMTKGGYRSC

Original motif     Consensus sequence: GGGTCAWBGRGTTCA Reverse complement motif     Consensus sequence: TGAACKCBWTGACCC


Dataset #: 2
Motif ID: 21
Motif name: PLAG1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.527928

Alignment:
GGGGCCCAAGGGGG-
GSMMCCYARGGKKKC

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC


Dataset #: 2
Motif ID: 12
Motif name: Zfx
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.53991

Alignment:
-VAGGCCBBGGCVBB
GYRYCCMTKGGYRSC

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB


Dataset #: 2
Motif ID: 29
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 13
Similarity score: 1.03254

Alignment:
--VDBHMAGGTCACCCTGACCY
GYRYCCMTKGGYRSC-------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV


Dataset #: 2
Motif ID: 18
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 13
Similarity score: 1.04952

Alignment:
BGRRRGRGGRTGRTTYGGGG--
-------GYRYCCMTKGGYRSC

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG


Dataset #: 2
Motif ID: 35
Motif name: INSM1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 1.54193

Alignment:
---TGYCAGGGGGCR
GSMMCCYARGGKKKC

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA


Dataset #: 2
Motif ID: 48
Motif name: Tcfcp2l1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 2.04218

Alignment:
CKGGDTBDMMCTGG----
---GYRYCCMTKGGYRSC

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG


Dataset #: 2 Motif ID: 14 Motif name: ZEB1

Original motif     Consensus sequence: CACCTD Reverse complement motif     Consensus sequence: HAGGTG

Best Matches for Motif ID 14 (Highest to Lowest)

Dataset #: 2
Motif ID: 46
Motif name: RORA_1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.0141289

Alignment:
TGACCTDVWT
-CACCTD---

Original motif     Consensus sequence: AWVDAGGTCA Reverse complement motif     Consensus sequence: TGACCTDVWT


Dataset #: 2
Motif ID: 19
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.0143133

Alignment:
GGYGCTGTCCATGGTGCTGAA
----------HAGGTG-----

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 2
Motif ID: 31
Motif name: Esrrb
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0207244

Alignment:
CACGTG
CACCTD

Original motif     Consensus sequence: CACGTG Reverse complement motif     Consensus sequence: CACGTG


Dataset #: 2
Motif ID: 25
Motif name: Arnt
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0207244

Alignment:
CACGTG
HAGGTG

Original motif     Consensus sequence: CACGTG Reverse complement motif     Consensus sequence: CACGTG


Dataset #: 2
Motif ID: 43
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.0232753

Alignment:
GTTGACCTTTGACCTTT
----------CACCTD-

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT


Dataset #: 2
Motif ID: 33
Motif name: HIF1AARNT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0237889

Alignment:
VBACGTGV
-HAGGTG-

Original motif     Consensus sequence: VBACGTGV Reverse complement motif     Consensus sequence: VCACGTBV


Dataset #: 2
Motif ID: 35
Motif name: INSM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.0262123

Alignment:
TGYCAGGGGGCR
---HAGGTG---

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA


Dataset #: 2
Motif ID: 20
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 6
Similarity score: 0.0264837

Alignment:
TGRCCTKTGHCCKAB
-CACCTD--------

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 2
Motif ID: 39
Motif name: MYCMAX
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.0269744

Alignment:
RASCACGTGGT
---HAGGTG--

Original motif     Consensus sequence: RASCACGTGGT Reverse complement motif     Consensus sequence: ACCACGTGSTM


Dataset #: 2
Motif ID: 44
Motif name: NR4A2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0288897

Alignment:
GTGACCTT
--CACCTD

Original motif     Consensus sequence: AAGGTCAC Reverse complement motif     Consensus sequence: GTGACCTT


Dataset #: 2 Motif ID: 15 Motif name: TFAP2A

Original motif     Consensus sequence: GCCBBVRGS Reverse complement motif     Consensus sequence: SCMVBBGGC

Best Matches for Motif ID 15 (Highest to Lowest)

Dataset #: 2
Motif ID: 12
Motif name: Zfx
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 9
Similarity score: 0.0131247

Alignment:
BBVGCCBVGGCCTV
---SCMVBBGGC--

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB


Dataset #: 2
Motif ID: 21
Motif name: PLAG1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 9
Similarity score: 0.0414588

Alignment:
GGGGCCCAAGGGGG
---GCCBBVRGS--

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC


Dataset #: 2
Motif ID: 13
Motif name: Zfp423
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 9
Similarity score: 0.0438157

Alignment:
GYRYCCMTKGGYRSC
---SCMVBBGGC---

Original motif     Consensus sequence: GSMMCCYARGGKKKC Reverse complement motif     Consensus sequence: GYRYCCMTKGGYRSC


Dataset #: 2
Motif ID: 29
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 9
Similarity score: 0.0450672

Alignment:
MGGTCAGGGTGACCTRDBHV
----------GCCBBVRGS-

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV


Dataset #: 2
Motif ID: 30
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 9
Similarity score: 0.0531668

Alignment:
BAGGYCABHBTGACCKHV
-----SCMVBBGGC----

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV


Dataset #: 2
Motif ID: 40
Motif name: Mycn
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 9
Similarity score: 0.0550803

Alignment:
HSCACGTGGC
-SCMVBBGGC

Original motif     Consensus sequence: HSCACGTGGC Reverse complement motif     Consensus sequence: GCCACGTGSD


Dataset #: 2
Motif ID: 45
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 9
Similarity score: 0.0581255

Alignment:
MSGKKRCGCWDCABTGBBCD
-------GCCBBVRGS----

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 2
Motif ID: 47
Motif name: RXRRAR_DR5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 9
Similarity score: 0.0606062

Alignment:
RGKTCABVVRGAGGTCA
--GCCBBVRGS------

Original motif     Consensus sequence: RGKTCABVVRGAGGTCA Reverse complement motif     Consensus sequence: TGACCTCKVVBTGAYCK


Dataset #: 2
Motif ID: 38
Motif name: Myc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 9
Similarity score: 0.0613455

Alignment:
VGCACGTGGH
-SCMVBBGGC

Original motif     Consensus sequence: VGCACGTGGH Reverse complement motif     Consensus sequence: DCCACGTGCV


Dataset #: 2
Motif ID: 48
Motif name: Tcfcp2l1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 9
Similarity score: 0.0631412

Alignment:
CCAGYYHVADCCRG
---GCCBBVRGS--

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG


Dataset #: 2 Motif ID: 16 Motif name: SP1

Original motif     Consensus sequence: CCCCKCCCCC Reverse complement motif     Consensus sequence: GGGGGYGGGG

Best Matches for Motif ID 16 (Highest to Lowest)

Dataset #: 2
Motif ID: 18
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0646465

Alignment:
BGRRRGRGGRTGRTTYGGGG
-GGGGGYGGGG---------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG


Dataset #: 2
Motif ID: 12
Motif name: Zfx
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0664832

Alignment:
BBVGCCBVGGCCTV
----GGGGGYGGGG

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB


Dataset #: 2
Motif ID: 21
Motif name: PLAG1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0725

Alignment:
CCCCCTTGGGCCCC
-CCCCKCCCCC---

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC


Dataset #: 2
Motif ID: 20
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0731995

Alignment:
TGRCCTKTGHCCKAB
--CCCCKCCCCC---

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 2
Motif ID: 36
Motif name: Klf4
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0761191

Alignment:
GCCYCMCCCD
CCCCKCCCCC

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD


Dataset #: 2
Motif ID: 28
Motif name: Egr1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0798413

Alignment:
HGCGTGGGCGK
GGGGGYGGGG-

Original motif     Consensus sequence: HGCGTGGGCGK Reverse complement motif     Consensus sequence: YCGCCCACGCH


Dataset #: 2
Motif ID: 45
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 10
Similarity score: 0.0846627

Alignment:
DGVBCABTGDWGCGKRRCSR
-------GGGGGYGGGG---

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 2
Motif ID: 41
Motif name: MZF1_5-13
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0884127

Alignment:
BKAGGGGDAD
GGGGGYGGGG

Original motif     Consensus sequence: BKAGGGGDAD Reverse complement motif     Consensus sequence: BTHCCCCTYB


Dataset #: 2
Motif ID: 35
Motif name: INSM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.089127

Alignment:
TGYCAGGGGGCR
GGGGGYGGGG--

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA


Dataset #: 2
Motif ID: 32
Motif name: EWSR1-FLI1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.0893651

Alignment:
CCTTCCTTCCTTCCTTCC
---CCCCKCCCCC-----

Original motif     Consensus sequence: GGAAGGAAGGAAGGAAGG Reverse complement motif     Consensus sequence: CCTTCCTTCCTTCCTTCC


Dataset #: 2 Motif ID: 17 Motif name: RXRAVDR

Original motif     Consensus sequence: GGGTCAWBGRGTTCA Reverse complement motif     Consensus sequence: TGAACKCBWTGACCC

Best Matches for Motif ID 17 (Highest to Lowest)

Dataset #: 2
Motif ID: 24
Motif name: Ar
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 15
Similarity score: 0.0566667

Alignment:
HWDAGHACRHHVTGTHCCHVMV
---TGAACKCBWTGACCC----

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH


Dataset #: 2
Motif ID: 30
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 15
Similarity score: 0.0617507

Alignment:
VHRGGTCABDBTGMCCTB
--GGGTCAWBGRGTTCA-

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV


Dataset #: 2
Motif ID: 47
Motif name: RXRRAR_DR5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 15
Similarity score: 0.062029

Alignment:
RGKTCABVVRGAGGTCA
GGGTCAWBGRGTTCA--

Original motif     Consensus sequence: RGKTCABVVRGAGGTCA Reverse complement motif     Consensus sequence: TGACCTCKVVBTGAYCK


Dataset #: 2
Motif ID: 29
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0714525

Alignment:
VDBHMAGGTCACCCTGACCY
-----TGAACKCBWTGACCC

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV


Dataset #: 2
Motif ID: 13
Motif name: Zfp423
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0849495

Alignment:
GSMMCCYARGGKKKC
TGAACKCBWTGACCC

Original motif     Consensus sequence: GSMMCCYARGGKKKC Reverse complement motif     Consensus sequence: GYRYCCMTKGGYRSC


Dataset #: 2
Motif ID: 43
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 15
Similarity score: 0.0866667

Alignment:
AAAGGTCAAAGGTCAAC
--GGGTCAWBGRGTTCA

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT


Dataset #: 2
Motif ID: 21
Motif name: PLAG1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 1.06201

Alignment:
GGGGCCCAAGGGGG--
-GGGTCAWBGRGTTCA

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC


Dataset #: 2
Motif ID: 20
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 1.07837

Alignment:
BTRGGDCARAGGKCA--
--GGGTCAWBGRGTTCA

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 2
Motif ID: 34
Motif name: HNF4A
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 1.0801

Alignment:
RGGBCAAAGKYCA--
GGGTCAWBGRGTTCA

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK


Dataset #: 2
Motif ID: 22
Motif name: NR2F1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 1.08482

Alignment:
AKGYYCAAAGRTCA--
-GGGTCAWBGRGTTCA

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA


Dataset #: 2 Motif ID: 18 Motif name: RREB1

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Best Matches for Motif ID 18 (Highest to Lowest)

Dataset #: 2
Motif ID: 29
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 19
Similarity score: 0.0874679

Alignment:
-MGGTCAGGGTGACCTRDBHV
BGRRRGRGGRTGRTTYGGGG-

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV


Dataset #: 2
Motif ID: 24
Motif name: Ar
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 19
Similarity score: 0.0927532

Alignment:
-HWDAGHACRHHVTGTHCCHVMV
CCCCMAAMCAMCCMCMMMCV---

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH


Dataset #: 2
Motif ID: 30
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 0.593122

Alignment:
BAGGYCABHBTGACCKHV--
BGRRRGRGGRTGRTTYGGGG

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV


Dataset #: 2
Motif ID: 45
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 17
Similarity score: 1.09431

Alignment:
---DGVBCABTGDWGCGKRRCSR
BGRRRGRGGRTGRTTYGGGG---

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 2
Motif ID: 21
Motif name: PLAG1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 2.5804

Alignment:
CCCCCTTGGGCCCC------
CCCCMAAMCAMCCMCMMMCV

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC


Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 2.58596

Alignment:
------CACACAVRCACACA
CCCCMAAMCAMCCMCMMMCV

Original motif     Consensus sequence: CACACAVRCACACA Reverse complement motif     Consensus sequence: TGTGTGKVTGTGTG


Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 2.59077

Alignment:
------CAYACACACACACA
CCCCMAAMCAMCCMCMMMCV

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG


Dataset #: 2
Motif ID: 47
Motif name: RXRRAR_DR5
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 13
Similarity score: 3.07964

Alignment:
RGKTCABVVRGAGGTCA-------
----BGRRRGRGGRTGRTTYGGGG

Original motif     Consensus sequence: RGKTCABVVRGAGGTCA Reverse complement motif     Consensus sequence: TGACCTCKVVBTGAYCK


Dataset #: 2
Motif ID: 20
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 3.08033

Alignment:
BTRGGDCARAGGKCA-------
--BGRRRGRGGRTGRTTYGGGG

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 2
Motif ID: 48
Motif name: Tcfcp2l1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 3.08771

Alignment:
-------CCAGYYHVADCCRG
CCCCMAAMCAMCCMCMMMCV-

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG


Dataset #: 2 Motif ID: 19 Motif name: REST

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Best Matches for Motif ID 19 (Highest to Lowest)

Dataset #: 2
Motif ID: 24
Motif name: Ar
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 21
Similarity score: 0.0685835

Alignment:
VRVDGGHACAVDDKGTHCTDWH
-GGYGCTGTCCATGGTGCTGAA

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH


Dataset #: 2
Motif ID: 45
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 18
Similarity score: 1.577

Alignment:
MSGKKRCGCWDCABTGBBCD---
--GGYGCTGTCCATGGTGCTGAA

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 2
Motif ID: 29
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 16
Similarity score: 2.56863

Alignment:
-----VDBHMAGGTCACCCTGACCY
TTCAGCACCATGGACAGCKCC----

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV


Dataset #: 2
Motif ID: 30
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 13
Similarity score: 4.05754

Alignment:
BAGGYCABHBTGACCKHV--------
-----GGYGCTGTCCATGGTGCTGAA

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV


Dataset #: 2
Motif ID: 34
Motif name: HNF4A
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 4.06973

Alignment:
TGMYCTTTGBCCK--------
GGYGCTGTCCATGGTGCTGAA

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK


Dataset #: 2
Motif ID: 20
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 4.07172

Alignment:
--------BTRGGDCARAGGKCA
TTCAGCACCATGGACAGCKCC--

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 2
Motif ID: 48
Motif name: Tcfcp2l1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 4.57098

Alignment:
CCAGYYHVADCCRG---------
--GGYGCTGTCCATGGTGCTGAA

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG


Dataset #: 2
Motif ID: 12
Motif name: Zfx
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 4.57482

Alignment:
---------BBVGCCBVGGCCTV
GGYGCTGTCCATGGTGCTGAA--

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB


Dataset #: 2
Motif ID: 17
Motif name: RXRAVDR
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 5.05758

Alignment:
TGAACKCBWTGACCC----------
----GGYGCTGTCCATGGTGCTGAA

Original motif     Consensus sequence: GGGTCAWBGRGTTCA Reverse complement motif     Consensus sequence: TGAACKCBWTGACCC


Dataset #: 2
Motif ID: 47
Motif name: RXRRAR_DR5
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 11
Similarity score: 5.05947

Alignment:
TGACCTCKVVBTGAYCK----------
------GGYGCTGTCCATGGTGCTGAA

Original motif     Consensus sequence: RGKTCABVVRGAGGTCA Reverse complement motif     Consensus sequence: TGACCTCKVVBTGAYCK


Dataset #: 2 Motif ID: 20 Motif name: PPARGRXRA

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Best Matches for Motif ID 20 (Highest to Lowest)

Dataset #: 2
Motif ID: 43
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 15
Similarity score: 0.0442974

Alignment:
AAAGGTCAAAGGTCAAC
BTRGGDCARAGGKCA--

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT


Dataset #: 2
Motif ID: 47
Motif name: RXRRAR_DR5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0500583

Alignment:
RGKTCABVVRGAGGTCA
--BTRGGDCARAGGKCA

Original motif     Consensus sequence: RGKTCABVVRGAGGTCA Reverse complement motif     Consensus sequence: TGACCTCKVVBTGAYCK


Dataset #: 2
Motif ID: 30
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 15
Similarity score: 0.0602408

Alignment:
VHRGGTCABDBTGMCCTB
BTRGGDCARAGGKCA---

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV


Dataset #: 2
Motif ID: 24
Motif name: Ar
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 15
Similarity score: 0.0714981

Alignment:
HWDAGHACRHHVTGTHCCHVMV
-------TGRCCTKTGHCCKAB

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH


Dataset #: 2
Motif ID: 45
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 15
Similarity score: 0.0720255

Alignment:
MSGKKRCGCWDCABTGBBCD
---TGRCCTKTGHCCKAB--

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 2
Motif ID: 29
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 15
Similarity score: 0.0723092

Alignment:
VDBHMAGGTCACCCTGACCY
---BTRGGDCARAGGKCA--

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV


Dataset #: 2
Motif ID: 18
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 15
Similarity score: 0.0755648

Alignment:
CCCCMAAMCAMCCMCMMMCV
-TGRCCTKTGHCCKAB----

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG


Dataset #: 2
Motif ID: 19
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 15
Similarity score: 0.0796159

Alignment:
TTCAGCACCATGGACAGCKCC
-BTRGGDCARAGGKCA-----

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 2
Motif ID: 22
Motif name: NR2F1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.536521

Alignment:
TGAMCTTTGMMCYT-
TGRCCTKTGHCCKAB

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA


Dataset #: 2
Motif ID: 21
Motif name: PLAG1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.575248

Alignment:
-GGGGCCCAAGGGGG
BTRGGDCARAGGKCA

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC


Dataset #: 2 Motif ID: 21 Motif name: PLAG1

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC

Best Matches for Motif ID 21 (Highest to Lowest)

Dataset #: 2
Motif ID: 13
Motif name: Zfp423
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0944264

Alignment:
GSMMCCYARGGKKKC
GGGGCCCAAGGGGG-

Original motif     Consensus sequence: GSMMCCYARGGKKKC Reverse complement motif     Consensus sequence: GYRYCCMTKGGYRSC


Dataset #: 2
Motif ID: 18
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 14
Similarity score: 0.102814

Alignment:
BGRRRGRGGRTGRTTYGGGG
GGGGCCCAAGGGGG------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG


Dataset #: 2
Motif ID: 20
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.107206

Alignment:
BTRGGDCARAGGKCA
-GGGGCCCAAGGGGG

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 2
Motif ID: 12
Motif name: Zfx
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.111315

Alignment:
VAGGCCBBGGCVBB
GGGGCCCAAGGGGG

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB


Dataset #: 2
Motif ID: 48
Motif name: Tcfcp2l1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.115151

Alignment:
CCAGYYHVADCCRG
CCCCCTTGGGCCCC

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG


Dataset #: 2
Motif ID: 47
Motif name: RXRRAR_DR5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.116287

Alignment:
RGKTCABVVRGAGGTCA
GGGGCCCAAGGGGG---

Original motif     Consensus sequence: RGKTCABVVRGAGGTCA Reverse complement motif     Consensus sequence: TGACCTCKVVBTGAYCK


Dataset #: 2
Motif ID: 45
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.117063

Alignment:
DGVBCABTGDWGCGKRRCSR
GGGGCCCAAGGGGG------

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 2
Motif ID: 17
Motif name: RXRAVDR
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 0.590064

Alignment:
-GGGTCAWBGRGTTCA
GGGGCCCAAGGGGG--

Original motif     Consensus sequence: GGGTCAWBGRGTTCA Reverse complement motif     Consensus sequence: TGAACKCBWTGACCC


Dataset #: 2
Motif ID: 34
Motif name: HNF4A
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.603385

Alignment:
-RGGBCAAAGKYCA
GGGGCCCAAGGGGG

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK


Dataset #: 2
Motif ID: 22
Motif name: NR2F1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.613207

Alignment:
-AKGYYCAAAGRTCA
GGGGCCCAAGGGGG-

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA


Dataset #: 2 Motif ID: 22 Motif name: NR2F1

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Best Matches for Motif ID 22 (Highest to Lowest)

Dataset #: 2
Motif ID: 43
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0174588

Alignment:
GTTGACCTTTGACCTTT
--TGAMCTTTGMMCYT-

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT


Dataset #: 2
Motif ID: 20
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0278283

Alignment:
BTRGGDCARAGGKCA
AKGYYCAAAGRTCA-

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 2
Motif ID: 47
Motif name: RXRRAR_DR5
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0625328

Alignment:
RGKTCABVVRGAGGTCA
---AKGYYCAAAGRTCA

Original motif     Consensus sequence: RGKTCABVVRGAGGTCA Reverse complement motif     Consensus sequence: TGACCTCKVVBTGAYCK


Dataset #: 2
Motif ID: 30
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0710475

Alignment:
BAGGYCABHBTGACCKHV
---TGAMCTTTGMMCYT-

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV


Dataset #: 2
Motif ID: 19
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 14
Similarity score: 0.071796

Alignment:
GGYGCTGTCCATGGTGCTGAA
--TGAMCTTTGMMCYT-----

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 2
Motif ID: 45
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 14
Similarity score: 0.0741987

Alignment:
MSGKKRCGCWDCABTGBBCD
----TGAMCTTTGMMCYT--

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 2
Motif ID: 34
Motif name: HNF4A
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.514048

Alignment:
-RGGBCAAAGKYCA
AKGYYCAAAGRTCA

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK


Dataset #: 2
Motif ID: 12
Motif name: Zfx
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.568042

Alignment:
BBVGCCBVGGCCTV-
-AKGYYCAAAGRTCA

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB


Dataset #: 2
Motif ID: 29
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 13
Similarity score: 0.569869

Alignment:
VDBHMAGGTCACCCTGACCY-
-------TGAMCTTTGMMCYT

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV


Dataset #: 2
Motif ID: 17
Motif name: RXRAVDR
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 0.572226

Alignment:
-TGAACKCBWTGACCC
TGAMCTTTGMMCYT--

Original motif     Consensus sequence: GGGTCAWBGRGTTCA Reverse complement motif     Consensus sequence: TGAACKCBWTGACCC


Dataset #: 2 Motif ID: 23 Motif name: MZF1_1-4

Original motif     Consensus sequence: BGGGGA Reverse complement motif     Consensus sequence: TCCCCV

Best Matches for Motif ID 23 (Highest to Lowest)

Dataset #: 2
Motif ID: 35
Motif name: INSM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0276389

Alignment:
MGCCCCCTGMCA
--TCCCCV----

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA


Dataset #: 2
Motif ID: 41
Motif name: MZF1_5-13
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.0314583

Alignment:
BKAGGGGDAD
---BGGGGA-

Original motif     Consensus sequence: BKAGGGGDAD Reverse complement motif     Consensus sequence: BTHCCCCTYB


Dataset #: 2
Motif ID: 36
Motif name: Klf4
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0406514

Alignment:
GCCYCMCCCD
TCCCCV----

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD


Dataset #: 2
Motif ID: 21
Motif name: PLAG1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 6
Similarity score: 0.0412963

Alignment:
GGGGCCCAAGGGGG
--------BGGGGA

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC


Dataset #: 1
Motif ID: 8
Motif name: Motif 8
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0426517

Alignment:
TCCCAG
TCCCCV

Original motif     Consensus sequence: CTGGGA Reverse complement motif     Consensus sequence: TCCCAG


Dataset #: 2
Motif ID: 16
Motif name: SP1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.0464881

Alignment:
GGGGGYGGGG
----BGGGGA

Original motif     Consensus sequence: CCCCKCCCCC Reverse complement motif     Consensus sequence: GGGGGYGGGG


Dataset #: 2
Motif ID: 18
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.0493561

Alignment:
CCCCMAAMCAMCCMCMMMCV
----TCCCCV----------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG


Dataset #: 2
Motif ID: 42
Motif name: NFKB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0521759

Alignment:
GGGGRTTCCCC
-----TCCCCV

Original motif     Consensus sequence: GGGGRTTCCCC Reverse complement motif     Consensus sequence: GGGGAAKCCCC


Dataset #: 2
Motif ID: 19
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 11
Number of overlap: 6
Similarity score: 0.0581528

Alignment:
GGYGCTGTCCATGGTGCTGAA
-----TCCCCV----------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 2
Motif ID: 24
Motif name: Ar
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 15
Number of overlap: 6
Similarity score: 0.0585417

Alignment:
HWDAGHACRHHVTGTHCCHVMV
--------------TCCCCV--

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH


Dataset #: 2 Motif ID: 24 Motif name: Ar

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Best Matches for Motif ID 24 (Highest to Lowest)

Dataset #: 2
Motif ID: 19
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 21
Similarity score: 0.0696331

Alignment:
-GGYGCTGTCCATGGTGCTGAA
VRVDGGHACAVDDKGTHCTDWH

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 2
Motif ID: 45
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 20
Similarity score: 0.564914

Alignment:
--MSGKKRCGCWDCABTGBBCD
VRVDGGHACAVDDKGTHCTDWH

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 2
Motif ID: 29
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 19
Similarity score: 1.05195

Alignment:
VDBHMAGGTCACCCTGACCY---
-VRVDGGHACAVDDKGTHCTDWH

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV


Dataset #: 2
Motif ID: 18
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 19
Similarity score: 1.07661

Alignment:
CCCCMAAMCAMCCMCMMMCV---
-HWDAGHACRHHVTGTHCCHVMV

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG


Dataset #: 2
Motif ID: 20
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 3.0649

Alignment:
-------BTRGGDCARAGGKCA
VRVDGGHACAVDDKGTHCTDWH

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 2
Motif ID: 30
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 14
Similarity score: 3.57597

Alignment:
--------VHRGGTCABDBTGMCCTB
VRVDGGHACAVDDKGTHCTDWH----

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV


Dataset #: 2
Motif ID: 34
Motif name: HNF4A
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 4.07506

Alignment:
---------TGMYCTTTGBCCK
HWDAGHACRHHVTGTHCCHVMV

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK


Dataset #: 1
Motif ID: 10
Motif name: Motif 10
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 4.07511

Alignment:
---------AAAAAAACAAARRA
HWDAGHACRHHVTGTHCCHVMV-

Original motif     Consensus sequence: TKKTTTGTTTTTTT Reverse complement motif     Consensus sequence: AAAAAAACAAARRA


Dataset #: 2
Motif ID: 48
Motif name: Tcfcp2l1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 4.0791

Alignment:
CKGGDTBDMMCTGG---------
-VRVDGGHACAVDDKGTHCTDWH

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG


Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 4.57405

Alignment:
TGTGTGKVTGTGTG----------
--HWDAGHACRHHVTGTHCCHVMV

Original motif     Consensus sequence: CACACAVRCACACA Reverse complement motif     Consensus sequence: TGTGTGKVTGTGTG


Dataset #: 2 Motif ID: 25 Motif name: Arnt

Original motif     Consensus sequence: CACGTG Reverse complement motif     Consensus sequence: CACGTG

Best Matches for Motif ID 25 (Highest to Lowest)

Dataset #: 2
Motif ID: 31
Motif name: Esrrb
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0

Alignment:
CACGTG
CACGTG

Original motif     Consensus sequence: CACGTG Reverse complement motif     Consensus sequence: CACGTG


Dataset #: 2
Motif ID: 39
Motif name: MYCMAX
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.0143849

Alignment:
RASCACGTGGT
---CACGTG--

Original motif     Consensus sequence: RASCACGTGGT Reverse complement motif     Consensus sequence: ACCACGTGSTM


Dataset #: 2
Motif ID: 38
Motif name: Myc
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0267529

Alignment:
DCCACGTGCV
--CACGTG--

Original motif     Consensus sequence: VGCACGTGGH Reverse complement motif     Consensus sequence: DCCACGTGCV


Dataset #: 2
Motif ID: 40
Motif name: Mycn
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0272641

Alignment:
HSCACGTGGC
--CACGTG--

Original motif     Consensus sequence: HSCACGTGGC Reverse complement motif     Consensus sequence: GCCACGTGSD


Dataset #: 2
Motif ID: 33
Motif name: HIF1AARNT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.0347756

Alignment:
VBACGTGV
-CACGTG-

Original motif     Consensus sequence: VBACGTGV Reverse complement motif     Consensus sequence: VCACGTBV


Dataset #: 2
Motif ID: 26
Motif name: ArntAhr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.065625

Alignment:
YGCGTG
CACGTG

Original motif     Consensus sequence: YGCGTG Reverse complement motif     Consensus sequence: CACGCM


Dataset #: 2
Motif ID: 14
Motif name: ZEB1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0689533

Alignment:
HAGGTG
CACGTG

Original motif     Consensus sequence: CACCTD Reverse complement motif     Consensus sequence: HAGGTG


Dataset #: 2
Motif ID: 28
Motif name: Egr1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0784722

Alignment:
HGCGTGGGCGK
CACGTG-----

Original motif     Consensus sequence: HGCGTGGGCGK Reverse complement motif     Consensus sequence: YCGCCCACGCH


Dataset #: 2
Motif ID: 37
Motif name: MIZF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.0854167

Alignment:
BAACGTCCGC
-CACGTG---

Original motif     Consensus sequence: BAACGTCCGC Reverse complement motif     Consensus sequence: GCGGACGTTV


Dataset #: 2
Motif ID: 21
Motif name: PLAG1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.105093

Alignment:
GGGGCCCAAGGGGG
------CACGTG--

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC


Dataset #: 2 Motif ID: 26 Motif name: ArntAhr

Original motif     Consensus sequence: YGCGTG Reverse complement motif     Consensus sequence: CACGCM

Best Matches for Motif ID 26 (Highest to Lowest)

Dataset #: 2
Motif ID: 28
Motif name: Egr1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0

Alignment:
YCGCCCACGCH
-----CACGCM

Original motif     Consensus sequence: HGCGTGGGCGK Reverse complement motif     Consensus sequence: YCGCCCACGCH


Dataset #: 2
Motif ID: 33
Motif name: HIF1AARNT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.0112447

Alignment:
VBACGTGV
-YGCGTG-

Original motif     Consensus sequence: VBACGTGV Reverse complement motif     Consensus sequence: VCACGTBV


Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0.0308396

Alignment:
TGTGTGTGTGTKTG
------YGCGTG--

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG


Dataset #: 2
Motif ID: 31
Motif name: Esrrb
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0315972

Alignment:
CACGTG
YGCGTG

Original motif     Consensus sequence: CACGTG Reverse complement motif     Consensus sequence: CACGTG


Dataset #: 2
Motif ID: 25
Motif name: Arnt
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0315972

Alignment:
CACGTG
YGCGTG

Original motif     Consensus sequence: CACGTG Reverse complement motif     Consensus sequence: CACGTG


Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0350575

Alignment:
TGTGTGKVTGTGTG
YGCGTG--------

Original motif     Consensus sequence: CACACAVRCACACA Reverse complement motif     Consensus sequence: TGTGTGKVTGTGTG


Dataset #: 2
Motif ID: 39
Motif name: MYCMAX
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0376488

Alignment:
RASCACGTGGT
---YGCGTG--

Original motif     Consensus sequence: RASCACGTGGT Reverse complement motif     Consensus sequence: ACCACGTGSTM


Dataset #: 2
Motif ID: 40
Motif name: Mycn
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0377949

Alignment:
GCCACGTGSD
--YGCGTG--

Original motif     Consensus sequence: HSCACGTGGC Reverse complement motif     Consensus sequence: GCCACGTGSD


Dataset #: 2
Motif ID: 38
Motif name: Myc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0399214

Alignment:
DCCACGTGCV
--YGCGTG--

Original motif     Consensus sequence: VGCACGTGGH Reverse complement motif     Consensus sequence: DCCACGTGCV


Dataset #: 2
Motif ID: 18
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.0433081

Alignment:
BGRRRGRGGRTGRTTYGGGG
--------YGCGTG------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG


Dataset #: 2 Motif ID: 27 Motif name: E2F1

Original motif     Consensus sequence: TTTSGCGC Reverse complement motif     Consensus sequence: GCGCSAAA

Best Matches for Motif ID 27 (Highest to Lowest)

Dataset #: 2
Motif ID: 21
Motif name: PLAG1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0255644

Alignment:
CCCCCTTGGGCCCC
-TTTSGCGC-----

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC


Dataset #: 2
Motif ID: 20
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0280436

Alignment:
TGRCCTKTGHCCKAB
--TTTSGCGC-----

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 2
Motif ID: 34
Motif name: HNF4A
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0283733

Alignment:
RGGBCAAAGKYCA
GCGCSAAA-----

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK


Dataset #: 2
Motif ID: 43
Motif name: NR1H2RXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0298005

Alignment:
AAAGGTCAAAGGTCAAC
--GCGCSAAA-------

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT


Dataset #: 2
Motif ID: 22
Motif name: NR2F1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0369159

Alignment:
TGAMCTTTGMMCYT
-----TTTSGCGC-

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA


Dataset #: 2
Motif ID: 13
Motif name: Zfp423
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0423573

Alignment:
GSMMCCYARGGKKKC
------GCGCSAAA-

Original motif     Consensus sequence: GSMMCCYARGGKKKC Reverse complement motif     Consensus sequence: GYRYCCMTKGGYRSC


Dataset #: 2
Motif ID: 28
Motif name: Egr1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0470922

Alignment:
YCGCCCACGCH
GCGCSAAA---

Original motif     Consensus sequence: HGCGTGGGCGK Reverse complement motif     Consensus sequence: YCGCCCACGCH


Dataset #: 1
Motif ID: 10
Motif name: Motif 10
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0486459

Alignment:
TKKTTTGTTTTTTT
---TTTSGCGC---

Original motif     Consensus sequence: TKKTTTGTTTTTTT Reverse complement motif     Consensus sequence: AAAAAAACAAARRA


Dataset #: 2
Motif ID: 18
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 13
Number of overlap: 8
Similarity score: 0.0497437

Alignment:
BGRRRGRGGRTGRTTYGGGG
TTTSGCGC------------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG


Dataset #: 1
Motif ID: 1
Motif name: Motif 1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 1.03392

Alignment:
--MTTCCK
TTTSGCGC

Original motif     Consensus sequence: RGGAAR Reverse complement motif     Consensus sequence: MTTCCK


Dataset #: 2 Motif ID: 28 Motif name: Egr1

Original motif     Consensus sequence: HGCGTGGGCGK Reverse complement motif     Consensus sequence: YCGCCCACGCH

Best Matches for Motif ID 28 (Highest to Lowest)

Dataset #: 2
Motif ID: 18
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0550907

Alignment:
BGRRRGRGGRTGRTTYGGGG
-------HGCGTGGGCGK--

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG


Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.062391

Alignment:
CAYACACACACACA
YCGCCCACGCH---

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG


Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0668604

Alignment:
CACACAVRCACACA
YCGCCCACGCH---

Original motif     Consensus sequence: CACACAVRCACACA Reverse complement motif     Consensus sequence: TGTGTGKVTGTGTG


Dataset #: 2
Motif ID: 13
Motif name: Zfp423
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0673496

Alignment:
GSMMCCYARGGKKKC
---YCGCCCACGCH-

Original motif     Consensus sequence: GSMMCCYARGGKKKC Reverse complement motif     Consensus sequence: GYRYCCMTKGGYRSC


Dataset #: 2
Motif ID: 12
Motif name: Zfx
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0764878

Alignment:
BBVGCCBVGGCCTV
--HGCGTGGGCGK-

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB


Dataset #: 2
Motif ID: 45
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 11
Similarity score: 0.0765783

Alignment:
DGVBCABTGDWGCGKRRCSR
----HGCGTGGGCGK-----

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 2
Motif ID: 35
Motif name: INSM1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0830177

Alignment:
TGYCAGGGGGCR
HGCGTGGGCGK-

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA


Dataset #: 2
Motif ID: 34
Motif name: HNF4A
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0857144

Alignment:
TGMYCTTTGBCCK
--HGCGTGGGCGK

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK


Dataset #: 2
Motif ID: 16
Motif name: SP1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.572401

Alignment:
CCCCKCCCCC-
YCGCCCACGCH

Original motif     Consensus sequence: CCCCKCCCCC Reverse complement motif     Consensus sequence: GGGGGYGGGG


Dataset #: 2
Motif ID: 36
Motif name: Klf4
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.580823

Alignment:
-GCCYCMCCCD
YCGCCCACGCH

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD


Dataset #: 2 Motif ID: 29 Motif name: ESR1

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Best Matches for Motif ID 29 (Highest to Lowest)

Dataset #: 2
Motif ID: 45
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 20
Similarity score: 0.0624908

Alignment:
MSGKKRCGCWDCABTGBBCD
MGGTCAGGGTGACCTRDBHV

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 2
Motif ID: 24
Motif name: Ar
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 19
Similarity score: 0.556363

Alignment:
-HWDAGHACRHHVTGTHCCHVMV
MGGTCAGGGTGACCTRDBHV---

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH


Dataset #: 2
Motif ID: 18
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 19
Similarity score: 0.575732

Alignment:
BGRRRGRGGRTGRTTYGGGG-
-MGGTCAGGGTGACCTRDBHV

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG


Dataset #: 2
Motif ID: 30
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 17
Similarity score: 1.50287

Alignment:
---VHRGGTCABDBTGMCCTB
VDBHMAGGTCACCCTGACCY-

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV


Dataset #: 2
Motif ID: 47
Motif name: RXRRAR_DR5
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 1.55839

Alignment:
---TGACCTCKVVBTGAYCK
VDBHMAGGTCACCCTGACCY

Original motif     Consensus sequence: RGKTCABVVRGAGGTCA Reverse complement motif     Consensus sequence: TGACCTCKVVBTGAYCK


Dataset #: 2
Motif ID: 19
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 16
Similarity score: 2.07409

Alignment:
TTCAGCACCATGGACAGCKCC----
-----VDBHMAGGTCACCCTGACCY

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 2
Motif ID: 17
Motif name: RXRAVDR
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 2.56536

Alignment:
-----GGGTCAWBGRGTTCA
MGGTCAGGGTGACCTRDBHV

Original motif     Consensus sequence: GGGTCAWBGRGTTCA Reverse complement motif     Consensus sequence: TGAACKCBWTGACCC


Dataset #: 2
Motif ID: 20
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 3.07055

Alignment:
------TGRCCTKTGHCCKAB
VDBHMAGGTCACCCTGACCY-

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 2
Motif ID: 12
Motif name: Zfx
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 3.56429

Alignment:
VAGGCCBBGGCVBB-------
-MGGTCAGGGTGACCTRDBHV

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB


Dataset #: 2
Motif ID: 13
Motif name: Zfp423
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 3.56489

Alignment:
GSMMCCYARGGKKKC-------
--MGGTCAGGGTGACCTRDBHV

Original motif     Consensus sequence: GSMMCCYARGGKKKC Reverse complement motif     Consensus sequence: GYRYCCMTKGGYRSC


Dataset #: 2 Motif ID: 30 Motif name: ESR2

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Best Matches for Motif ID 30 (Highest to Lowest)

Dataset #: 2
Motif ID: 24
Motif name: Ar
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 18
Similarity score: 0.0488603

Alignment:
HWDAGHACRHHVTGTHCCHVMV
--BAGGYCABHBTGACCKHV--

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH


Dataset #: 2
Motif ID: 45
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0851144

Alignment:
MSGKKRCGCWDCABTGBBCD
BAGGYCABHBTGACCKHV--

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 2
Motif ID: 18
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 0.0903249

Alignment:
BGRRRGRGGRTGRTTYGGGG
BAGGYCABHBTGACCKHV--

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG


Dataset #: 2
Motif ID: 19
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0916961

Alignment:
GGYGCTGTCCATGGTGCTGAA
-VHRGGTCABDBTGMCCTB--

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 2
Motif ID: 29
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 17
Similarity score: 0.511812

Alignment:
VDBHMAGGTCACCCTGACCY-
---VHRGGTCABDBTGMCCTB

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV


Dataset #: 2
Motif ID: 47
Motif name: RXRRAR_DR5
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.570972

Alignment:
-RGKTCABVVRGAGGTCA
BAGGYCABHBTGACCKHV

Original motif     Consensus sequence: RGKTCABVVRGAGGTCA Reverse complement motif     Consensus sequence: TGACCTCKVVBTGAYCK


Dataset #: 2
Motif ID: 20
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 1.56699

Alignment:
BTRGGDCARAGGKCA---
VHRGGTCABDBTGMCCTB

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 2
Motif ID: 12
Motif name: Zfx
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 2.07891

Alignment:
VAGGCCBBGGCVBB----
BAGGYCABHBTGACCKHV

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB


Dataset #: 2
Motif ID: 22
Motif name: NR2F1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 2.08921

Alignment:
----TGAMCTTTGMMCYT
VHRGGTCABDBTGMCCTB

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA


Dataset #: 2
Motif ID: 48
Motif name: Tcfcp2l1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 2.09109

Alignment:
----CCAGYYHVADCCRG
BAGGYCABHBTGACCKHV

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG


Dataset #: 2 Motif ID: 31 Motif name: Esrrb

Original motif     Consensus sequence: CACGTG Reverse complement motif     Consensus sequence: CACGTG

Best Matches for Motif ID 31 (Highest to Lowest)

Dataset #: 2
Motif ID: 25
Motif name: Arnt
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0

Alignment:
CACGTG
CACGTG

Original motif     Consensus sequence: CACGTG Reverse complement motif     Consensus sequence: CACGTG


Dataset #: 2
Motif ID: 39
Motif name: MYCMAX
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0143849

Alignment:
ACCACGTGSTM
--CACGTG---

Original motif     Consensus sequence: RASCACGTGGT Reverse complement motif     Consensus sequence: ACCACGTGSTM


Dataset #: 2
Motif ID: 38
Motif name: Myc
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0267529

Alignment:
DCCACGTGCV
--CACGTG--

Original motif     Consensus sequence: VGCACGTGGH Reverse complement motif     Consensus sequence: DCCACGTGCV


Dataset #: 2
Motif ID: 40
Motif name: Mycn
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0272641

Alignment:
HSCACGTGGC
--CACGTG--

Original motif     Consensus sequence: HSCACGTGGC Reverse complement motif     Consensus sequence: GCCACGTGSD


Dataset #: 2
Motif ID: 33
Motif name: HIF1AARNT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0347756

Alignment:
VCACGTBV
-CACGTG-

Original motif     Consensus sequence: VBACGTGV Reverse complement motif     Consensus sequence: VCACGTBV


Dataset #: 2
Motif ID: 26
Motif name: ArntAhr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.065625

Alignment:
YGCGTG
CACGTG

Original motif     Consensus sequence: YGCGTG Reverse complement motif     Consensus sequence: CACGCM


Dataset #: 2
Motif ID: 14
Motif name: ZEB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0689533

Alignment:
CACCTD
CACGTG

Original motif     Consensus sequence: CACCTD Reverse complement motif     Consensus sequence: HAGGTG


Dataset #: 2
Motif ID: 28
Motif name: Egr1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0784722

Alignment:
HGCGTGGGCGK
CACGTG-----

Original motif     Consensus sequence: HGCGTGGGCGK Reverse complement motif     Consensus sequence: YCGCCCACGCH


Dataset #: 2
Motif ID: 37
Motif name: MIZF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.0854167

Alignment:
BAACGTCCGC
-CACGTG---

Original motif     Consensus sequence: BAACGTCCGC Reverse complement motif     Consensus sequence: GCGGACGTTV


Dataset #: 2
Motif ID: 21
Motif name: PLAG1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0.105093

Alignment:
GGGGCCCAAGGGGG
------CACGTG--

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC


Dataset #: 2 Motif ID: 32 Motif name: EWSR1-FLI1

Original motif     Consensus sequence: GGAAGGAAGGAAGGAAGG Reverse complement motif     Consensus sequence: CCTTCCTTCCTTCCTTCC

Best Matches for Motif ID 32 (Highest to Lowest)

Dataset #: 2
Motif ID: 43
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 12
Similarity score: 1.09472

Alignment:
------AAAGGTCAAAGGTCAAC
GGAAGGAAGGAAGGAAGG-----