MOTIFSIM - MOTIF SIMilarity Detection Tool

Version 2.2

INPUT

Input Parameters
Number of files: 2
Number of top significant motifs: 10
Number of best matches: 10
Similarity cutoff >= 0.75
Matching motif database: UniProbe Mus Musculus
Motif tree: Yes
Combined similar motifs: Yes
Output file type: All
Output file format: All

Input files and motif counts
File name Count of motifs Dataset number
MEME-ChIP_DM721.txt 11 1
PScanChIP_DM721.txt 37 2

RESULTS

Best Matches in Database for Each Motif (Highest to Lowest)

Dataset #: 1 Motif ID: 1 Motif name: Motif 1

Original motif Reverse complement motif
Consensus sequence: RGGAAR Consensus sequence: MTTCCK

Best Matches for Motif ID 1 (Highest to Lowest)

Motif ID: UP00090
Motif name: Elf3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0

Alignment:
TDAMTTCCYYDTD
---MTTCCK----

Original motif Reverse complement motif
Consensus sequence: DAHMMGGAARTDA Consensus sequence: TDAMTTCCYYDTD


Motif ID: UP00085
Motif name: Sfpi1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.00351709

Alignment:
HDACTTCCBCWTDV
---MTTCCK-----

Original motif Reverse complement motif
Consensus sequence: BDAWGVGGAAGTDH Consensus sequence: HDACTTCCBCWTDV


Motif ID: UP00414
Motif name: Ets1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.00356242

Alignment:
DDBAMTTCCGGTDHDHB
----MTTCCK-------

Original motif Reverse complement motif
Consensus sequence: BDDDHACCGGAARTVDD Consensus sequence: DDBAMTTCCGGTDHDHB


Motif ID: UP00409
Motif name: Elf5
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.00439981

Alignment:
BWAHSMGGAAGTWD
-----RGGAAR---

Original motif Reverse complement motif
Consensus sequence: BWAHSMGGAAGTWD Consensus sequence: DWACTTCCRSDTWV


Motif ID: UP00015
Motif name: Ehf_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.00655644

Alignment:
DDACTTCCGGBTHBB
---MTTCCK------

Original motif Reverse complement motif
Consensus sequence: VBDABCCGGAAGTDD Consensus sequence: DDACTTCCGGBTHBB


Motif ID: UP00013
Motif name: Gabpa_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.00663687

Alignment:
BHHHACTTCCGGTHHBD
-----MTTCCK------

Original motif Reverse complement motif
Consensus sequence: HVHHACCGGAAGTDHHV Consensus sequence: BHHHACTTCCGGTHHBD


Motif ID: UP00413
Motif name: Elf4
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.00896416

Alignment:
DBBHACTTCCGGKWTH
-----MTTCCK-----

Original motif Reverse complement motif
Consensus sequence: DBBHACTTCCGGKWTH Consensus sequence: HAWYCCGGAAGTHBBD


Motif ID: UP00419
Motif name: Spic
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.00975526

Alignment:
VAAAGMGGAAGTWD
-----RGGAAR---

Original motif Reverse complement motif
Consensus sequence: VAAAGMGGAAGTWD Consensus sequence: DWACTTCCRCTTTB


Motif ID: UP00418
Motif name: Etv6
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0.0103447

Alignment:
DVHBTACTTCCGGHTHB
------MTTCCK-----

Original motif Reverse complement motif
Consensus sequence: DVHBTACTTCCGGHTHB Consensus sequence: BHAHCCGGAAGTABDVD


Motif ID: UP00404
Motif name: Elf2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.010491

Alignment:
DBBHACTTCCGGDWDB
-----MTTCCK-----

Original motif Reverse complement motif
Consensus sequence: DBBHACTTCCGGDWDB Consensus sequence: BDWDCCGGAAGTHBBD


Dataset #: 1 Motif ID: 2 Motif name: Motif 2

Original motif Reverse complement motif
Consensus sequence: AMACA Consensus sequence: TGTRT

Best Matches for Motif ID 2 (Highest to Lowest)

Motif ID: UP00042
Motif name: Gm397_second
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 5
Similarity score: 0

Alignment:
DVMVGCACACACKCVH
------AMACA-----

Original motif Reverse complement motif
Consensus sequence: DVMVGCACACACKCVH Consensus sequence: HBGYGTGTGTGCVRVD


Motif ID: UP00025
Motif name: Foxk1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 5
Similarity score: 0.00605402

Alignment:
DDAATGTAAACAAAVVB
-------AMACA-----

Original motif Reverse complement motif
Consensus sequence: DDAATGTAAACAAAVVB Consensus sequence: BBVTTTGTTTACATTDD


Motif ID: UP00041
Motif name: Foxj1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 5
Similarity score: 0.00753267

Alignment:
HDHRTAAACAAAHDDD
-----AMACA------

Original motif Reverse complement motif
Consensus sequence: HDHRTAAACAAAHDDD Consensus sequence: DDDHTTTGTTTAMHDH


Motif ID: UP00039
Motif name: Foxj3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 5
Similarity score: 0.00965634

Alignment:
HDHADGTAAACAAAVVH
-------AMACA-----

Original motif Reverse complement motif
Consensus sequence: HDHADGTAAACAAAVVH Consensus sequence: DVVTTTGTTTACDTHDH


Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 5
Similarity score: 0.00989492

Alignment:
DWAATRTAAACAAWVVB
-------AMACA-----

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD


Motif ID: UP00004
Motif name: Sox14_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 5
Similarity score: 0.0116453

Alignment:
BBDCMATTGTSTBRB
-------TGTRT---

Original motif Reverse complement motif
Consensus sequence: BKBASACAATRGHBB Consensus sequence: BBDCMATTGTSTBRB


Motif ID: UP00073
Motif name: Foxa2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 5
Similarity score: 0.0143122

Alignment:
HHWAWGTAAAYAAAVDB
-------AMACA-----

Original motif Reverse complement motif
Consensus sequence: HHWAWGTAAAYAAAVDB Consensus sequence: BDVTTTKTTTACWTWHH


Motif ID: UP00026
Motif name: Zscan4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 5
Similarity score: 0.0153228

Alignment:
BHHHTTGTGTGCKHVD
-----TGTRT------

Original motif Reverse complement motif
Consensus sequence: HVHRGCACACAAHHHV Consensus sequence: BHHHTTGTGTGCKHVD


Motif ID: UP00011
Motif name: Irf6_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 5
Similarity score: 0.024195

Alignment:
DHDBTKGTTTCGHTHDD
-----TGTRT-------

Original motif Reverse complement motif
Consensus sequence: HDDAHCGAAACYAVDDD Consensus sequence: DHDBTKGTTTCGHTHDD


Motif ID: UP00000
Motif name: Smad3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 5
Similarity score: 0.0255974

Alignment:
HDHDDCCAGACABBHVH
-------AMACA-----

Original motif Reverse complement motif
Consensus sequence: HDHDDCCAGACABBHVH Consensus sequence: HVHBVTGTCTGGDDHDD


Dataset #: 1 Motif ID: 3 Motif name: Motif 3

Original motif Reverse complement motif
Consensus sequence: AGSCWGG Consensus sequence: CCWGSCT

Best Matches for Motif ID 3 (Highest to Lowest)

Motif ID: UP00035
Motif name: Hic1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 7
Similarity score: 0

Alignment:
DDBHGGTTGGCATVBD
---AGSCWGG------

Original motif Reverse complement motif
Consensus sequence: DBBATGCCAACCHVHH Consensus sequence: DDBHGGTTGGCATVBD


Motif ID: UP00070
Motif name: Gcm1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0.00560414

Alignment:
DHDVATGCGGGTHVVH
----AGSCWGG-----

Original motif Reverse complement motif
Consensus sequence: HVVHACCCGCATVDHD Consensus sequence: DHDVATGCGGGTHVVH


Motif ID: UP00095
Motif name: Zfp691_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 7
Similarity score: 0.0109149

Alignment:
DABBWGACTCCTHDVHV
--CCWGSCT--------

Original motif Reverse complement motif
Consensus sequence: DABBWGACTCCTHDVHV Consensus sequence: VHBDDAGGAGTCWBBTD


Motif ID: UP00006
Motif name: Zic3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 7
Similarity score: 0.0109242

Alignment:
DVHCYTGCTGTGHDH
--CCWGSCT------

Original motif Reverse complement motif
Consensus sequence: DDDCACAGCAKGHVD Consensus sequence: DVHCYTGCTGTGHDH


Motif ID: UP00000
Motif name: Smad3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.0114503

Alignment:
HDHDDCCAGACABBHVH
-----CCWGSCT-----

Original motif Reverse complement motif
Consensus sequence: HDHDDCCAGACABBHVH Consensus sequence: HVHBVTGTCTGGDDHDD


Motif ID: UP00539
Motif name: Gli2_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.0115258

Alignment:
CBDMCMGGGTGGTCCHVBVBAH
-----AGSCWGG----------

Original motif Reverse complement motif
Consensus sequence: HTBVVVDGGACCACCCRGRDBG Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH


Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 10
Number of overlap: 7
Similarity score: 0.0117486

Alignment:
HGDHVHKGACCACCCGGBGBGDB
---------CCWGSCT-------

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB


Motif ID: UP00540
Motif name: Gli3_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.0131676

Alignment:
CVHBSCGGGTGGTCMHVHHCDH
-----AGSCWGG----------

Original motif Reverse complement motif
Consensus sequence: HDGHHBHRGACCACCCGSVDVG Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH


Motif ID: UP00081
Motif name: Mybl1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 7
Similarity score: 0.0136026

Alignment:
BHCGGCAGTTGGBBB
--AGSCWGG------

Original motif Reverse complement motif
Consensus sequence: BBVCCAACTGCCGHB Consensus sequence: BHCGGCAGTTGGBBB


Motif ID: UP00057
Motif name: Zic2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 7
Similarity score: 0.0139558

Alignment:
DVBCYTGCTGBGDDD
--CCWGSCT------

Original motif Reverse complement motif
Consensus sequence: HHDCVCAGCAKGVVD Consensus sequence: DVBCYTGCTGBGDDD


Dataset #: 1 Motif ID: 4 Motif name: Motif 4

Original motif Reverse complement motif
Consensus sequence: CTCTGY Consensus sequence: KCAGAG

Best Matches for Motif ID 4 (Highest to Lowest)

Motif ID: UP00031
Motif name: Zbtb3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0

Alignment:
BBBAVTGCAGTGBBVDD
------KCAGAG-----

Original motif Reverse complement motif
Consensus sequence: DDBBBCACTGCABTBBB Consensus sequence: BBBAVTGCAGTGBBVDD


Motif ID: UP00018
Motif name: Irf4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.00610915

Alignment:
BHHWCCGAGAMTVVB
---KCAGAG------

Original motif Reverse complement motif
Consensus sequence: VVBAYTCTCGGWHDB Consensus sequence: BHHWCCGAGAMTVVB


Motif ID: UP00095
Motif name: Zfp691_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.00648219

Alignment:
VHBDDAGGAGTCWBBTD
----KCAGAG-------

Original motif Reverse complement motif
Consensus sequence: DABBWGACTCCTHDVHV Consensus sequence: VHBDDAGGAGTCWBBTD


Motif ID: UP00006
Motif name: Zic3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.00853125

Alignment:
DVHCYTGCTGTGHDH
-------CTCTGY--

Original motif Reverse complement motif
Consensus sequence: DDDCACAGCAKGHVD Consensus sequence: DVHCYTGCTGTGHDH


Motif ID: UP00007
Motif name: Egr1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 10
Number of overlap: 6
Similarity score: 0.00895004

Alignment:
BHHDTCCCACTCBDBV
---------CTCTGY-

Original motif Reverse complement motif
Consensus sequence: BBHBGAGTGGGAHHDB Consensus sequence: BHHDTCCCACTCBDBV


Motif ID: UP00095
Motif name: Zfp691_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 6
Similarity score: 0.00955889

Alignment:
DDHBYGAGCACTGBHHB
--------CTCTGY---

Original motif Reverse complement motif
Consensus sequence: BDHVCAGTGCTCMBHDD Consensus sequence: DDHBYGAGCACTGBHHB


Motif ID: UP00067
Motif name: Lef1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.0106184

Alignment:
VDDAGATCAAAGGKDDD
------KCAGAG-----

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATCTDDV Consensus sequence: VDDAGATCAAAGGKDDD


Motif ID: UP00102
Motif name: Zic1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 6
Similarity score: 0.0122635

Alignment:
BHDCVCAGCAGGHVD
--KCAGAG-------

Original motif Reverse complement motif
Consensus sequence: BHDCVCAGCAGGHVD Consensus sequence: DVHCCTGCTGBGDDB


Motif ID: UP00083
Motif name: Tcf7l2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.0131237

Alignment:
BDDASATCAAAGGMDDD
------KCAGAG-----

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATSTDDV Consensus sequence: BDDASATCAAAGGMDDD


Motif ID: UP00057
Motif name: Zic2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0136526

Alignment:
HHDCVCAGCAKGVVD
--KCAGAG-------

Original motif Reverse complement motif
Consensus sequence: HHDCVCAGCAKGVVD Consensus sequence: DVBCYTGCTGBGDDD


Dataset #: 1 Motif ID: 5 Motif name: Motif 5

Original motif Reverse complement motif
Consensus sequence: ATKTM Consensus sequence: RARAT

Best Matches for Motif ID 5 (Highest to Lowest)

Motif ID: UP00080
Motif name: Gata5_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 5
Similarity score: 0

Alignment:
VVBHRAGATATCWDHBB
----RARAT--------

Original motif Reverse complement motif
Consensus sequence: VVBHRAGATATCWDHBB Consensus sequence: VVHHWGATATCTMHBBV


Motif ID: UP00148
Motif name: Hdx
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 5
Similarity score: 0.00279496

Alignment:
DDKDHGAAATCAHHBHV
-----RARAT-------

Original motif Reverse complement motif
Consensus sequence: DDKDHGAAATCAHHBHV Consensus sequence: BDBDHTGATTTCDHYDD


Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 5
Similarity score: 0.00967655

Alignment:
BDHDDADAGATAAGADHBDHVD
------RARAT-----------

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV


Motif ID: UP00250
Motif name: Irx5
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 5
Similarity score: 0.0116566

Alignment:
DDDHWACATGTWHDABW
-------ATKTM-----

Original motif Reverse complement motif
Consensus sequence: DDDHWACATGTWHDABW Consensus sequence: WVTDHWACATGTWHDDD


Motif ID: UP00236
Motif name: Irx2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 5
Similarity score: 0.0120196

Alignment:
WDDDTACATGTADDWBW
-------ATKTM-----

Original motif Reverse complement motif
Consensus sequence: WDDDTACATGTADDWBW Consensus sequence: WVWDDTACATGTADDDW


Motif ID: UP00150
Motif name: Irx6
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 5
Similarity score: 0.0120601

Alignment:
HAHDTACATGTAVDWHT
-------ATKTM-----

Original motif Reverse complement motif
Consensus sequence: HAHDTACATGTAVDWHT Consensus sequence: AHWDBTACATGTADHTH


Motif ID: UP00223
Motif name: Irx3_2226.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 5
Similarity score: 0.0124884

Alignment:
DDDHTACATGTAVWDHD
-------ATKTM-----

Original motif Reverse complement motif
Consensus sequence: DDDHTACATGTAVWDHD Consensus sequence: DHDWBTACATGTAHDDD


Motif ID: UP00033
Motif name: Zfp410_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 5
Similarity score: 0.0150044

Alignment:
DVDDATGGGATGKMDDV
---------ATKTM---

Original motif Reverse complement motif
Consensus sequence: DVDDATGGGATGKMDDV Consensus sequence: BDDYYCATCCCATDDBD


Motif ID: UP00223
Motif name: Irx3_0920.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 5
Similarity score: 0.0150192

Alignment:
DDDDTACATGTAVWWHD
-------ATKTM-----

Original motif Reverse complement motif
Consensus sequence: DDDDTACATGTAVWWHD Consensus sequence: DDWWBTACATGTADDDD


Motif ID: UP00528
Motif name: Foxm1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 12
Number of overlap: 5
Similarity score: 0.0166075

Alignment:
MWSMBAARRATGCDCABHATGD
------RARAT-----------

Original motif Reverse complement motif
Consensus sequence: MWSMBAARRATGCDCABHATGD Consensus sequence: DCATDBTGHGCATKMTTBRSWR


Dataset #: 1 Motif ID: 6 Motif name: Motif 6

Original motif Reverse complement motif
Consensus sequence: CMGCRGC Consensus sequence: GCKGCYG

Best Matches for Motif ID 6 (Highest to Lowest)

Motif ID: UP00052
Motif name: Osr2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0

Alignment:
HHHHGCTACKGTHVHH
----GCKGCYG-----

Original motif Reverse complement motif
Consensus sequence: HHVHACRGTAGCHHHD Consensus sequence: HHHHGCTACKGTHVHH


Motif ID: UP00027
Motif name: Osr1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0.00108105

Alignment:
DHBHGCTACKGTHDHH
----GCKGCYG-----

Original motif Reverse complement motif
Consensus sequence: HHDHACRGTAGCHVHD Consensus sequence: DHBHGCTACKGTHDHH


Motif ID: UP00099
Motif name: Ascl2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 7
Similarity score: 0.00905497

Alignment:
BBYVVCAGCTGCBVHHD
-------GCKGCYG---

Original motif Reverse complement motif
Consensus sequence: BBYVVCAGCTGCBVHHD Consensus sequence: HHDVVGCAGCTGVBKVB


Motif ID: UP00102
Motif name: Zic1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.0111061

Alignment:
DVHCCTGCTGBGDDB
---GCKGCYG-----

Original motif Reverse complement motif
Consensus sequence: BHDCVCAGCAGGHVD Consensus sequence: DVHCCTGCTGBGDDB


Motif ID: UP00057
Motif name: Zic2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.0126897

Alignment:
HHDCVCAGCAKGVVD
-----CMGCRGC---

Original motif Reverse complement motif
Consensus sequence: HHDCVCAGCAKGVVD Consensus sequence: DVBCYTGCTGBGDDD


Motif ID: UP00006
Motif name: Zic3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.0137402

Alignment:
DVHCYTGCTGTGHDH
---GCKGCYG-----

Original motif Reverse complement motif
Consensus sequence: DDDCACAGCAKGHVD Consensus sequence: DVHCYTGCTGTGHDH


Motif ID: UP00045
Motif name: Mafb_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 7
Similarity score: 0.0253076

Alignment:
DMTWDGTCAGCADWTTH
-------CMGCRGC---

Original motif Reverse complement motif
Consensus sequence: HAAWDTGCTGACDWARH Consensus sequence: DMTWDGTCAGCADWTTH


Motif ID: UP00193
Motif name: Rhox11_1765.2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 7
Similarity score: 0.0292668

Alignment:
WVVHWTWACAGCGBHBT
--------CMGCRGC--

Original motif Reverse complement motif
Consensus sequence: AVDVCGCTGTWAWDVVW Consensus sequence: WVVHWTWACAGCGBHBT


Motif ID: UP00193
Motif name: Rhox11_2205.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.0298083

Alignment:
WVVHWTWACAGCGHHVT
--------CMGCRGC--

Original motif Reverse complement motif
Consensus sequence: AVDHCGCTGTWAWDVVW Consensus sequence: WVVHWTWACAGCGHHVT


Motif ID: UP00122
Motif name: Tgif1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.0332976

Alignment:
DABWWTGACAGCTVVBD
--------CMGCRGC--

Original motif Reverse complement motif
Consensus sequence: DABWWTGACAGCTVVBD Consensus sequence: DBVVAGCTGTCAWWVTH


Dataset #: 1 Motif ID: 7 Motif name: Motif 7

Original motif Reverse complement motif
Consensus sequence: CCCRCCCC Consensus sequence: GGGGMGGG

Best Matches for Motif ID 7 (Highest to Lowest)

Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0

Alignment:
HBDRCCMCGCCCHHHD
-----CCCRCCCC---

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH


Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.00490878

Alignment:
BVVHAGGGGGCGRDHHB
------GGGGMGGG---

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB


Motif ID: UP00007
Motif name: Egr1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0101441

Alignment:
HCCGCCCCCGCAHB
CCCRCCCC------

Original motif Reverse complement motif
Consensus sequence: HCCGCCCCCGCAHB Consensus sequence: VHTGCGGGGGCGGH


Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0106908

Alignment:
DBCCCCCCCCCCMYC
---CCCRCCCC----

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD


Motif ID: UP00043
Motif name: Bcl6b_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0152681

Alignment:
HBBBCCGCCCCWHHHV
---CCCRCCCC-----

Original motif Reverse complement motif
Consensus sequence: HBBBCCGCCCCWHHHV Consensus sequence: BHHHWGGGGCGGBBVH


Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 8
Similarity score: 0.0252184

Alignment:
MHHHWHYTMCCHCCCACVAABVH
--------CCCRCCCC-------

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY


Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0258528

Alignment:
BHHDYGGGGGGGGBVD
------GGGGMGGG--

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD


Motif ID: UP00007
Motif name: Egr1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0318239

Alignment:
BHHDTCCCACTCBDBV
-----CCCRCCCC---

Original motif Reverse complement motif
Consensus sequence: BBHBGAGTGGGAHHDB Consensus sequence: BHHDTCCCACTCBDBV


Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 8
Similarity score: 0.0333599

Alignment:
HGDHVHKGACCACCCGGBGBGDB
--------CCCRCCCC-------

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB


Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0336185

Alignment:
HHHHDGGGGCGGDBHDV
-----GGGGMGGG----

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV


Dataset #: 1 Motif ID: 8 Motif name: Motif 8

Original motif Reverse complement motif
Consensus sequence: CTGGGA Consensus sequence: TCCCAG

Best Matches for Motif ID 8 (Highest to Lowest)

Motif ID: UP00033
Motif name: Zfp410_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 6
Similarity score: 0

Alignment:
DVDDATGGGATGKMDDV
----CTGGGA-------

Original motif Reverse complement motif
Consensus sequence: DVDDATGGGATGKMDDV Consensus sequence: BDDYYCATCCCATDDBD


Motif ID: UP00216
Motif name: Obox1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 6
Similarity score: 0.000600574

Alignment:
DHDGTTAATCCCCKTDD
--------TCCCAG---

Original motif Reverse complement motif
Consensus sequence: DDARGGGGATTAACDHH Consensus sequence: DHDGTTAATCCCCKTDD


Motif ID: UP00229
Motif name: Otx1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 10
Number of overlap: 6
Similarity score: 0.0140775

Alignment:
VHHWATTAATCCCMDHH
---------TCCCAG--

Original motif Reverse complement motif
Consensus sequence: DDDRGGGATTAATWHHB Consensus sequence: VHHWATTAATCCCMDHH


Motif ID: UP00160
Motif name: Obox3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 6
Similarity score: 0.0142192

Alignment:
HHWGTTAATCCCCCBBH
--------TCCCAG---

Original motif Reverse complement motif
Consensus sequence: HBVGGGGGATTAACWHH Consensus sequence: HHWGTTAATCCCCCBBH


Motif ID: UP00239
Motif name: Obox2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.0184594

Alignment:
HTARTTAATCCCCCKBD
--------TCCCAG---

Original motif Reverse complement motif
Consensus sequence: DBRGGGGGATTAAMTAH Consensus sequence: HTARTTAATCCCCCKBD


Motif ID: UP00416
Motif name: Fli1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.018604

Alignment:
DHDACCGGAAKTBBVV
----CTGGGA------

Original motif Reverse complement motif
Consensus sequence: VBBVAYTTCCGGTDDH Consensus sequence: DHDACCGGAAKTBBVV


Motif ID: UP00411
Motif name: Erg
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.0196433

Alignment:
BDDACCGGAAKTVBVB
----CTGGGA------

Original motif Reverse complement motif
Consensus sequence: VBBVAYTTCCGGTDDB Consensus sequence: BDDACCGGAAKTVBVB


Motif ID: UP00413
Motif name: Elf4
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.0196806

Alignment:
HAWYCCGGAAGTHBBD
----CTGGGA------

Original motif Reverse complement motif
Consensus sequence: DBBHACTTCCGGKWTH Consensus sequence: HAWYCCGGAAGTHBBD


Motif ID: UP00143
Motif name: Dobox5
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 10
Number of overlap: 6
Similarity score: 0.0199632

Alignment:
DDHVGGGATTAATHDTH
--CTGGGA---------

Original motif Reverse complement motif
Consensus sequence: DDHVGGGATTAATHDTH Consensus sequence: DADHATTAATCCCBHHH


Motif ID: UP00265
Motif name: Pitx3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 10
Number of overlap: 6
Similarity score: 0.0210625

Alignment:
GBHDGCTAATCCCCCB
---------TCCCAG-

Original motif Reverse complement motif
Consensus sequence: VGGGGGATTAGCDDBC Consensus sequence: GBHDGCTAATCCCCCB


Dataset #: 1 Motif ID: 9 Motif name: Motif 9

Original motif Reverse complement motif
Consensus sequence: CACACAVRCACACA Consensus sequence: TGTGTGKVTGTGTG

Best Matches for Motif ID 9 (Highest to Lowest)

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 14
Similarity score: 0.0487588

Alignment:
VYWVVHCRCCACMCACGAHSBHH
-CACACAVRCACACA--------

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Motif ID: UP00042
Motif name: Gm397_second
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0496974

Alignment:
HBGYGTGTGTGCVRVD
-TGTGTGKVTGTGTG-

Original motif Reverse complement motif
Consensus sequence: DVMVGCACACACKCVH Consensus sequence: HBGYGTGTGTGCVRVD


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 10
Number of overlap: 14
Similarity score: 0.0503392

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
TGTGTGKVTGTGTG---------

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00025
Motif name: Foxk1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0506792

Alignment:
HDDTGTTKTTKTHHD
-TGTGTGKVTGTGTG

Original motif Reverse complement motif
Consensus sequence: HHHAYAAYAACAHHH Consensus sequence: HDDTGTTKTTKTHHD


Motif ID: UP00036
Motif name: Myf6_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0516113

Alignment:
VVVRACAGVCBCDCC
-CACACAVRCACACA

Original motif Reverse complement motif
Consensus sequence: VVVRACAGVCBCDCC Consensus sequence: GGDGBGVCTGTKVVB


Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0523703

Alignment:
GTVBDAATTGTVTGHGDDHKVB
CACACAVRCACACA--------

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC


Motif ID: UP00026
Motif name: Zscan4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0557355

Alignment:
DHVDTGTGCACAYAHDH
CACACAVRCACACA---

Original motif Reverse complement motif
Consensus sequence: DHVDTGTGCACAYAHDH Consensus sequence: HDHTMTGTGCACADVHD


Motif ID: UP00526
Motif name: Foxn1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 14
Similarity score: 0.0578572

Alignment:
DDRMHBACGCGYGCGTDGBBDB
-CACACAVRCACACA-------

Original motif Reverse complement motif
Consensus sequence: DDRMHBACGCGYGCGTDGBBDB Consensus sequence: BDVBCDACGCKCGCGTBHRKHD


Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.0580046

Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
------TGTGTGKVTGTGTG---

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB


Motif ID: UP00014
Motif name: Sox17_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0581238

Alignment:
DDBDKATGAATGHDBHV
--TGTGTGKVTGTGTG-

Original motif Reverse complement motif
Consensus sequence: VHBHHCATTCATRHVDD Consensus sequence: DDBDKATGAATGHDBHV


Dataset #: 1 Motif ID: 10 Motif name: Motif 10

Original motif Reverse complement motif
Consensus sequence: TKKTTTGTTTTTTT Consensus sequence: AAAAAAACAAARRA

Best Matches for Motif ID 10 (Highest to Lowest)

Motif ID: UP00061
Motif name: Foxl1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0319341

Alignment:
HDTYTTGTTWTKDDDT
TKKTTTGTTTTTTT--

Original motif Reverse complement motif
Consensus sequence: ADDDYAWAACAAMAHH Consensus sequence: HDTYTTGTTWTKDDDT


Motif ID: UP00062
Motif name: Sox4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.0368361

Alignment:
HBDDDAACAAAGRVBHH
AAAAAAACAAARRA---

Original motif Reverse complement motif
Consensus sequence: HBDDDAACAAAGRVBHH Consensus sequence: HHBBMCTTTGTTHDDBH


Motif ID: UP00030
Motif name: Sox11_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0370295

Alignment:
HBDDRAACAAAGRABHH
AAAAAAACAAARRA---

Original motif Reverse complement motif
Consensus sequence: HBDDRAACAAAGRABHH Consensus sequence: HHBTMCTTTGTTMDDVH


Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.038882

Alignment:
HHVBYTTTTTTTTDDVV
-TKKTTTGTTTTTTT--

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV


Motif ID: UP00101
Motif name: Sox12_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0402601

Alignment:
HDTMCTTTGTSTVDBB
AAAAAAACAAARRA--

Original motif Reverse complement motif
Consensus sequence: VVDBASACAAAGRADH Consensus sequence: HDTMCTTTGTSTVDBB


Motif ID: UP00073
Motif name: Foxa2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0402844

Alignment:
VVDAATAACAAAVVB
-AAAAAAACAAARRA

Original motif Reverse complement motif
Consensus sequence: VVDAATAACAAAVVB Consensus sequence: BVVTTTGTTATTDBB


Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 14
Similarity score: 0.0409353

Alignment:
HHBDHDDAACAATDRHHHHHBW
--AAAAAAACAAARRA------

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH


Motif ID: UP00025
Motif name: Foxk1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0416172

Alignment:
HDDTGTTKTTKTHHD
-TKKTTTGTTTTTTT

Original motif Reverse complement motif
Consensus sequence: HHHAYAAYAACAHHH Consensus sequence: HDDTGTTKTTKTHHD


Motif ID: UP00039
Motif name: Foxj3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0419017

Alignment:
DVVTTTGTTTACDTHDH
---AAAAAAACAAARRA

Original motif Reverse complement motif
Consensus sequence: HDHADGTAAACAAAVVH Consensus sequence: DVVTTTGTTTACDTHDH


Motif ID: UP00073
Motif name: Foxa2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0439168

Alignment:
BDVTTTKTTTACWTWHH
---AAAAAAACAAARRA

Original motif Reverse complement motif
Consensus sequence: HHWAWGTAAAYAAAVDB Consensus sequence: BDVTTTKTTTACWTWHH


Dataset #: 1 Motif ID: 11 Motif name: Motif 11

Original motif Reverse complement motif
Consensus sequence: CAYACACACACACA Consensus sequence: TGTGTGTGTGTKTG

Best Matches for Motif ID 11 (Highest to Lowest)

Motif ID: UP00042
Motif name: Gm397_second
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0235042

Alignment:
DVMVGCACACACKCVH
-CAYACACACACACA-

Original motif Reverse complement motif
Consensus sequence: DVMVGCACACACKCVH Consensus sequence: HBGYGTGTGTGCVRVD


Motif ID: UP00026
Motif name: Zscan4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0372612

Alignment:
BHHHTTGTGTGCKHVD
-TGTGTGTGTGTKTG-

Original motif Reverse complement motif
Consensus sequence: HVHRGCACACAAHHHV Consensus sequence: BHHHTTGTGTGCKHVD


Motif ID: UP00000
Motif name: Smad3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0446373

Alignment:
HVHBVTGTCTGGDDHDD
---TGTGTGTGTGTKTG

Original motif Reverse complement motif
Consensus sequence: HDHDDCCAGACABBHVH Consensus sequence: HVHBVTGTCTGGDDHDD


Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0457169

Alignment:
BADHBDHCGCCCMCGCAHHDBBV
---CAYACACACACACA------

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB


Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0477221

Alignment:
GTVBDAATTGTVTGHGDDHKVB
CAYACACACACACA--------

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC


Motif ID: UP00025
Motif name: Foxk1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0485483

Alignment:
HDDTGTTKTTKTHHD
-TGTGTGTGTGTKTG

Original motif Reverse complement motif
Consensus sequence: HHHAYAAYAACAHHH Consensus sequence: HDDTGTTKTTKTHHD


Motif ID: UP00041
Motif name: Foxj1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0488633

Alignment:
HDHRTAAACAAAHDDD
CAYACACACACACA--

Original motif Reverse complement motif
Consensus sequence: HDHRTAAACAAAHDDD Consensus sequence: DDDHTTTGTTTAMHDH


Motif ID: UP00026
Motif name: Zscan4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0489596

Alignment:
DHVDTGTGCACAYAHDH
--CAYACACACACACA-

Original motif Reverse complement motif
Consensus sequence: DHVDTGTGCACAYAHDH Consensus sequence: HDHTMTGTGCACADVHD


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 10
Number of overlap: 14
Similarity score: 0.0501133

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
TGTGTGTGTGTKTG---------

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00025
Motif name: Foxk1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0518949

Alignment:
DDAATGTAAACAAAVVB
--CAYACACACACACA-

Original motif Reverse complement motif
Consensus sequence: DDAATGTAAACAAAVVB Consensus sequence: BBVTTTGTTTACATTDD


Dataset #: 2 Motif ID: 12 Motif name: Zfx

Original motif Reverse complement motif
Consensus sequence: BBVGCCBVGGCCTV Consensus sequence: VAGGCCBBGGCVBB

Best Matches for Motif ID 12 (Highest to Lowest)

Motif ID: UP00005
Motif name: Tcfap2a_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0596136

Alignment:
HHRCCBBWGGDCDB
BBVGCCBVGGCCTV

Original motif Reverse complement motif
Consensus sequence: HHRCCBBWGGDCDB Consensus sequence: BDGHCCWBVGGKDH


Motif ID: UP00540
Motif name: Gli3_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 10
Number of overlap: 14
Similarity score: 0.0603516

Alignment:
ABBBBVVRGACCACCCACRDBBM
BBVGCCBVGGCCTV---------

Original motif Reverse complement motif
Consensus sequence: ABBBBVVRGACCACCCACRDBBM Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT


Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0604694

Alignment:
BDHHMCGCCCCCTHVBB
---VAGGCCBBGGCVBB

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB


Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0606067

Alignment:
HBDRCCMCGCCCHHHD
BBVGCCBVGGCCTV--

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH


Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 14
Similarity score: 0.0606878

Alignment:
HVGVSAGGAGGGTCYHHHHYVH
--------VAGGCCBBGGCVBB

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH


Motif ID: UP00087
Motif name: Tcfap2c_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0608063

Alignment:
HWGCCCTDGGGCDB
VAGGCCBBGGCVBB

Original motif Reverse complement motif
Consensus sequence: BHGCCCDAGGGCWD Consensus sequence: HWGCCCTDGGGCDB


Motif ID: UP00540
Motif name: Gli3_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 14
Similarity score: 0.0615001

Alignment:
DVTTVVCVYGGHGGYCHHDMYB
----BBVGCCBVGGCCTV----

Original motif Reverse complement motif
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH


Motif ID: UP00010
Motif name: Tcfap2b_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0624288

Alignment:
HHKGCCYSRGGCWAD
-BBVGCCBVGGCCTV

Original motif Reverse complement motif
Consensus sequence: DTWGCCKSMGGCRHH Consensus sequence: HHKGCCYSRGGCWAD


Motif ID: UP00082
Motif name: Zfp187_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0627664

Alignment:
VHMDGGACVAGGRCDH
VAGGCCBBGGCVBB--

Original motif Reverse complement motif
Consensus sequence: DDGMCCTBGTCCHYHV Consensus sequence: VHMDGGACVAGGRCDH


Motif ID: UP00009
Motif name: Nr2f2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0636529

Alignment:
HVBVTGACCCSGBVBV
--VAGGCCBBGGCVBB

Original motif Reverse complement motif
Consensus sequence: VBVBCSGGGTCAVBBH Consensus sequence: HVBVTGACCCSGBVBV


Dataset #: 2 Motif ID: 13 Motif name: Zfp423

Original motif Reverse complement motif
Consensus sequence: GSMMCCYARGGKKKC Consensus sequence: GYRYCCMTKGGYRSC

Best Matches for Motif ID 13 (Highest to Lowest)

Motif ID: UP00057
Motif name: Zic2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0178077

Alignment:
BMCCCCCGGGGGGGB
GSMMCCYARGGKKKC

Original motif Reverse complement motif
Consensus sequence: BMCCCCCGGGGGGGB Consensus sequence: VCCCCCCCGGGGGRB


Motif ID: UP00006
Motif name: Zic3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0213948

Alignment:
BMCCCCCGGGGGGGB
GSMMCCYARGGKKKC

Original motif Reverse complement motif
Consensus sequence: BMCCCCCGGGGGGGB Consensus sequence: VCCCCCCCGGGGGRB


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 15
Similarity score: 0.0255241

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
-------GSMMCCYARGGKKKC-

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00087
Motif name: Tcfap2c_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0261399

Alignment:
WHHSCCYSRGGSDAD
GSMMCCYARGGKKKC

Original motif Reverse complement motif
Consensus sequence: WHHSCCYSRGGSDAD Consensus sequence: DTHSCCKSMGGSHHW


Motif ID: UP00005
Motif name: Tcfap2a_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0266201

Alignment:
WDHSCCYSRGGSRAD
GSMMCCYARGGKKKC

Original motif Reverse complement motif
Consensus sequence: WDHSCCYSRGGSRAD Consensus sequence: DTMSCCKSMGGSHDW


Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 15
Similarity score: 0.027503

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
-------GSMMCCYARGGKKKC

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00220
Motif name: Nkx1-1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 15
Similarity score: 0.0276935

Alignment:
WGHRCYAATTRGYGSDV
-GYRYCCMTKGGYRSC-

Original motif Reverse complement motif
Consensus sequence: WGHRCYAATTRGYGSDV Consensus sequence: BHSCMCKAATTMGMDCW


Motif ID: UP00539
Motif name: Gli2_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0280481

Alignment:
DTVBDDRGACCACCCAGDWDGBH
--------GSMMCCYARGGKKKC

Original motif Reverse complement motif
Consensus sequence: DTVBDDRGACCACCCAGDWDGBH Consensus sequence: DBCDWHCTGGGTGGTCMDHBBAH


Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 15
Similarity score: 0.0288797

Alignment:
HGDHVHKGACCACCCGGBGBGDB
--------GSMMCCYARGGKKKC

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB


Motif ID: UP00028
Motif name: Tcfap2e_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.029693

Alignment:
HHHGCCTSAGGCDAD
GSMMCCYARGGKKKC

Original motif Reverse complement motif
Consensus sequence: HHHGCCTSAGGCDAD Consensus sequence: DTHGCCTSAGGCHHH


Dataset #: 2 Motif ID: 14 Motif name: ZEB1

Original motif Reverse complement motif
Consensus sequence: CACCTD Consensus sequence: HAGGTG

Best Matches for Motif ID 14 (Highest to Lowest)

Motif ID: UP00068
Motif name: Eomes_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0

Alignment:
VVBVCKACACCTHVBV
-------CACCTD---

Original motif Reverse complement motif
Consensus sequence: VBVDAGGTGTYGVBBV Consensus sequence: VVBVCKACACCTHVBV


Motif ID: UP00199
Motif name: Six4
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.00433068

Alignment:
BBVHVGGTGTCATHDDT
---HAGGTG--------

Original motif Reverse complement motif
Consensus sequence: ADDHATGACACCBHBBV Consensus sequence: BBVHVGGTGTCATHDDT


Motif ID: UP00068
Motif name: Eomes_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 6
Similarity score: 0.00524081

Alignment:
HHHTTTCACACCTDHBV
--------CACCTD---

Original motif Reverse complement motif
Consensus sequence: BVHDAGGTGTGAAAHHH Consensus sequence: HHHTTTCACACCTDHBV


Motif ID: UP00046
Motif name: Tcfe2a_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.00911301

Alignment:
VBHHVCAGGTGCDVDHD
-----HAGGTG------

Original motif Reverse complement motif
Consensus sequence: VBHHVCAGGTGCDVDHD Consensus sequence: DHDBHGCACCTGBDDVB


Motif ID: UP00047
Motif name: Zbtb7b_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 6
Similarity score: 0.0233556

Alignment:
BDDRVGACCACCHBDVB
--------CACCTD---

Original motif Reverse complement motif
Consensus sequence: BDDRVGACCACCHBDVB Consensus sequence: BBDVHGGTGGTCBKDDB


Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 11
Number of overlap: 6
Similarity score: 0.0233928

Alignment:
BHCBCBCCGGGTGGTCYHVHDCH
-------HAGGTG----------

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB


Motif ID: UP00539
Motif name: Gli2_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 12
Number of overlap: 6
Similarity score: 0.0254338

Alignment:
HTBVVVDGGACCACCCRGRDBG
-----------CACCTD-----

Original motif Reverse complement motif
Consensus sequence: HTBVVVDGGACCACCCRGRDBG Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH


Motif ID: UP00540
Motif name: Gli3_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 12
Number of overlap: 6
Similarity score: 0.0290143

Alignment:
HDGHHBHRGACCACCCGSVDVG
-----------CACCTD-----

Original motif Reverse complement motif
Consensus sequence: HDGHHBHRGACCACCCGSVDVG Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH


Motif ID: UP00036
Motif name: Myf6_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0309673

Alignment:
VVDBAACAGBTGBYHB
------HAGGTG----

Original motif Reverse complement motif
Consensus sequence: VVDBAACAGBTGBYHB Consensus sequence: BDKVCABCTGTTBDBV


Motif ID: UP00249
Motif name: Nkx2-5
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.031502

Alignment:
HDADCCACTTRAAWTT
-----CACCTD-----

Original motif Reverse complement motif
Consensus sequence: HDADCCACTTRAAWTT Consensus sequence: AAWTTMAAGTGGHTDH


Dataset #: 2 Motif ID: 15 Motif name: TFAP2A

Original motif Reverse complement motif
Consensus sequence: GCCBBVRGS Consensus sequence: SCMVBBGGC

Best Matches for Motif ID 15 (Highest to Lowest)

Motif ID: UP00010
Motif name: Tcfap2b_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 9
Similarity score: 0.0115546

Alignment:
HHKGCCYSRGGCWAD
---GCCBBVRGS---

Original motif Reverse complement motif
Consensus sequence: DTWGCCKSMGGCRHH Consensus sequence: HHKGCCYSRGGCWAD


Motif ID: UP00010
Motif name: Tcfap2b_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 9
Similarity score: 0.0150447

Alignment:
DYGCCYBARGGCAH
--GCCBBVRGS---

Original motif Reverse complement motif
Consensus sequence: DYGCCYBARGGCAH Consensus sequence: HTGCCMTVKGGCMD


Motif ID: UP00005
Motif name: Tcfap2a_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 9
Similarity score: 0.0151527

Alignment:
WDHSCCYSRGGSRAD
---GCCBBVRGS---

Original motif Reverse complement motif
Consensus sequence: WDHSCCYSRGGSRAD Consensus sequence: DTMSCCKSMGGSHDW


Motif ID: UP00087
Motif name: Tcfap2c_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 9
Similarity score: 0.016909

Alignment:
WHHSCCYSRGGSDAD
---GCCBBVRGS---

Original motif Reverse complement motif
Consensus sequence: WHHSCCYSRGGSDAD Consensus sequence: DTHSCCKSMGGSHHW


Motif ID: UP00087
Motif name: Tcfap2c_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 9
Similarity score: 0.0170259

Alignment:
BHGCCCDAGGGCWD
--GCCBBVRGS---

Original motif Reverse complement motif
Consensus sequence: BHGCCCDAGGGCWD Consensus sequence: HWGCCCTDGGGCDB


Motif ID: UP00028
Motif name: Tcfap2e_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 9
Similarity score: 0.0198854

Alignment:
HHHGCCTSAGGCDAD
---GCCBBVRGS---

Original motif Reverse complement motif
Consensus sequence: HHHGCCTSAGGCDAD Consensus sequence: DTHGCCTSAGGCHHH


Motif ID: UP00000
Motif name: Smad3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 9
Similarity score: 0.0203681

Alignment:
BHBHDTGGCGGGGBDHD
SCMVBBGGC--------

Original motif Reverse complement motif
Consensus sequence: DHHBCCCCGCCAHHBHB Consensus sequence: BHBHDTGGCGGGGBDHD


Motif ID: UP00003
Motif name: E2F3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 9
Similarity score: 0.0217064

Alignment:
BBBDYTGGCGCCKWDBD
SCMVBBGGC--------

Original motif Reverse complement motif
Consensus sequence: HBHWYGGCGCCAMDVBB Consensus sequence: BBBDYTGGCGCCKWDBD


Motif ID: UP00005
Motif name: Tcfap2a_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 9
Similarity score: 0.0234775

Alignment:
HHRCCBBWGGDCDB
--GCCBBVRGS---

Original motif Reverse complement motif
Consensus sequence: HHRCCBBWGGDCDB Consensus sequence: BDGHCCWBVGGKDH


Motif ID: UP00093
Motif name: Klf7_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 9
Similarity score: 0.026642

Alignment:
VVDBATACGCCCHAHHD
--------GCCBBVRGS

Original motif Reverse complement motif
Consensus sequence: VVDBATACGCCCHAHHD Consensus sequence: DHDTHGGGCGTATBHBB


Dataset #: 2 Motif ID: 16 Motif name: SP1

Original motif Reverse complement motif
Consensus sequence: CCCCKCCCCC Consensus sequence: GGGGGYGGGG

Best Matches for Motif ID 16 (Highest to Lowest)

Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0231018

Alignment:
DBCCCCCCCCCCMYC
--CCCCKCCCCC---

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD


Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0303207

Alignment:
HBDRCCMCGCCCHHHD
----CCCCKCCCCC--

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH


Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0323007

Alignment:
HHHHDGGGGCGGDBHDV
----GGGGGYGGGG---

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV


Motif ID: UP00099
Motif name: Ascl2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0340973

Alignment:
HVDVGGGHGGGGDBHB
--GGGGGYGGGG----

Original motif Reverse complement motif
Consensus sequence: BHVDCCCCDCCCBDBH Consensus sequence: HVDVGGGHGGGGDBHB


Motif ID: UP00043
Motif name: Bcl6b_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0351051

Alignment:
BHHHWGGGGCGGBBVH
----GGGGGYGGGG--

Original motif Reverse complement motif
Consensus sequence: HBBBCCGCCCCWHHHV Consensus sequence: BHHHWGGGGCGGBBVH


Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 10
Similarity score: 0.0390437

Alignment:
HDBABCGBKRGYGGCGMSBHAK
------GGGGGYGGGG------

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 10
Similarity score: 0.0393358

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
-------GGGGGYGGGG------

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Motif ID: UP00000
Motif name: Smad3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0413863

Alignment:
DHHBCCCCGCCAHHBHB
----CCCCKCCCCC---

Original motif Reverse complement motif
Consensus sequence: DHHBCCCCGCCAHHBHB Consensus sequence: BHBHDTGGCGGGGBDHD


Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.0418947

Alignment:
HVBCCCCCCCCMHHHB
---CCCCKCCCCC---

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD


Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0420708

Alignment:
BDHHMCGCCCCCTHVBB
--CCCCKCCCCC-----

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB


Dataset #: 2 Motif ID: 17 Motif name: RXRAVDR

Original motif Reverse complement motif
Consensus sequence: GGGTCAWBGRGTTCA Consensus sequence: TGAACKCBWTGACCC

Best Matches for Motif ID 17 (Highest to Lowest)

Motif ID: UP00037
Motif name: Zfp105_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0631638

Alignment:
DYGVKTCAATAABTYDD
--GGGTCAWBGRGTTCA

Original motif Reverse complement motif
Consensus sequence: DYGVKTCAATAABTYDD Consensus sequence: HDMAVTTATTGARVCMH


Motif ID: UP00044
Motif name: Mafk_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0639668

Alignment:
DWAAAWTGCTGACTH
TGAACKCBWTGACCC

Original motif Reverse complement motif
Consensus sequence: DWAAAWTGCTGACTH Consensus sequence: HAGTCAGCAWTTTWD


Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 15
Similarity score: 0.0682816

Alignment:
BHCBCBCCGGGTGGTCYHVHDCH
--------GGGTCAWBGRGTTCA

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB


Motif ID: UP00539
Motif name: Gli2_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 15
Similarity score: 0.06995

Alignment:
HTBVVVDGGACCACCCRGRDBG
-TGAACKCBWTGACCC------

Original motif Reverse complement motif
Consensus sequence: HTBVVVDGGACCACCCRGRDBG Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH


Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0711699

Alignment:
DVMHHDHKGACCCTCCTSVCBH
-------TGAACKCBWTGACCC

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH


Motif ID: UP00540
Motif name: Gli3_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 15
Similarity score: 0.072162

Alignment:
CVHBSCGGGTGGTCMHVHHCDH
------GGGTCAWBGRGTTCA-

Original motif Reverse complement motif
Consensus sequence: HDGHHBHRGACCACCCGSVDVG Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH


Motif ID: UP00045
Motif name: Mafb_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.562034

Alignment:
-HAAWDTGCTGACDWARH
TGAACKCBWTGACCC---

Original motif Reverse complement motif
Consensus sequence: HAAWDTGCTGACDWARH Consensus sequence: DMTWDGTCAGCADWTTH


Motif ID: UP00012
Motif name: Bbx_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.562788

Alignment:
HWBTTCAWTGAADTH-
-GGGTCAWBGRGTTCA

Original motif Reverse complement motif
Consensus sequence: HADTTCAWTGAABWD Consensus sequence: HWBTTCAWTGAADTH


Motif ID: UP00005
Motif name: Tcfap2a_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.56549

Alignment:
-HHRCCBBWGGDCDB
GGGTCAWBGRGTTCA-

Original motif Reverse complement motif
Consensus sequence: HHRCCBBWGGDCDB Consensus sequence: BDGHCCWBVGGKDH


Motif ID: UP00067
Motif name: Lef1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.565777

Alignment:
VDDAGATCAAAGGKDDD-
---GGGTCAWBGRGTTCA

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATCTDDV Consensus sequence: VDDAGATCAAAGGKDDD


Dataset #: 2 Motif ID: 18 Motif name: RREB1

Original motif Reverse complement motif
Consensus sequence: CCCCMAAMCAMCCMCMMMCV Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Best Matches for Motif ID 18 (Highest to Lowest)

Motif ID: UP00540
Motif name: Gli3_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 20
Similarity score: 0.0443369

Alignment:
YBVDMGTGGGTGGTCKVVBVBBT
BGRRRGRGGRTGRTTYGGGG---

Original motif Reverse complement motif
Consensus sequence: ABBBBVVRGACCACCCACRDBBM Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT


Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 20
Similarity score: 0.0490569

Alignment:
MHHHWHYTMCCHCCCACVAABVH
--CCCCMAAMCAMCCMCMMMCV-

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY


Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 20
Similarity score: 0.0546172

Alignment:
BTBVTCVTGGGTGGTCMVVDVBB
-BGRRRGRGGRTGRTTYGGGG--

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB


Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 20
Similarity score: 0.055783

Alignment:
VYWVVHCRCCACMCACGAHSBHH
-CCCCMAAMCAMCCMCMMMCV--

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 20
Similarity score: 0.057969

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
--BGRRRGRGGRTGRTTYGGGG-

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00539
Motif name: Gli2_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 20
Similarity score: 0.0595101

Alignment:
DTVBDDRGACCACCCAGDWDGBH
--CCCCMAAMCAMCCMCMMMCV-

Original motif Reverse complement motif
Consensus sequence: DTVBDDRGACCACCCAGDWDGBH Consensus sequence: DBCDWHCTGGGTGGTCMDHBBAH


Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 20
Similarity score: 0.0622003

Alignment:
BHCBCBCCGGGTGGTCYHVHDCH
-BGRRRGRGGRTGRTTYGGGG--

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB


Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 20
Similarity score: 0.0626951

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
-CCCCMAAMCAMCCMCMMMCV-

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 20
Similarity score: 0.0631901

Alignment:
DVMHHDHKGACCCTCCTSVCBH
CCCCMAAMCAMCCMCMMMCV--

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH


Motif ID: UP00528
Motif name: Foxm1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 20
Similarity score: 0.0673848

Alignment:
DCATDBTGHGCATKMTTBRSWR
--BGRRRGRGGRTGRTTYGGGG

Original motif Reverse complement motif
Consensus sequence: MWSMBAARRATGCDCABHATGD Consensus sequence: DCATDBTGHGCATKMTTBRSWR


Dataset #: 2 Motif ID: 19 Motif name: REST

Original motif Reverse complement motif
Consensus sequence: TTCAGCACCATGGACAGCKCC Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Best Matches for Motif ID 19 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 21
Similarity score: 0.0699178

Alignment:
BBBDVVRGACCACCCAVGABBAB
--TTCAGCACCATGGACAGCKCC

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB


Motif ID: UP00540
Motif name: Gli3_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 21
Similarity score: 0.0734685

Alignment:
VMYDHDGMCCHCCKBGVVAAVH
GGYGCTGTCCATGGTGCTGAA-

Original motif Reverse complement motif
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH


Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 21
Similarity score: 0.0740652

Alignment:
VYWVVHCRCCACMCACGAHSBHH
-TTCAGCACCATGGACAGCKCC-

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 21
Similarity score: 0.0750152

Alignment:
MHHHWHYTMCCHCCCACVAABVH
--TTCAGCACCATGGACAGCKCC

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY


Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 21
Similarity score: 0.0751449

Alignment:
BHCBCBCCGGGTGGTCYHVHDCH
GGYGCTGTCCATGGTGCTGAA--

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 21
Similarity score: 0.075832

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
-TTCAGCACCATGGACAGCKCC-

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00539
Motif name: Gli2_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 21
Similarity score: 0.0773446

Alignment:
DTVBDDRGACCACCCAGDWDGBH
--TTCAGCACCATGGACAGCKCC

Original motif Reverse complement motif
Consensus sequence: DTVBDDRGACCACCCAGDWDGBH Consensus sequence: DBCDWHCTGGGTGGTCMDHBBAH


Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 21
Similarity score: 0.0775367

Alignment:
YDYBDHTMCACGTGGADDBMDGT
--TTCAGCACCATGGACAGCKCC

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM


Motif ID: UP00528
Motif name: Foxm1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 21
Similarity score: 0.077977

Alignment:
DCATDBTGHGCATKMTTBRSWR
-GGYGCTGTCCATGGTGCTGAA

Original motif Reverse complement motif
Consensus sequence: MWSMBAARRATGCDCABHATGD Consensus sequence: DCATDBTGHGCATKMTTBRSWR


Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 21
Similarity score: 0.0785969

Alignment:
BADHBDHCGCCCMCGCAHHDBBV
--GGYGCTGTCCATGGTGCTGAA

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB


Dataset #: 2 Motif ID: 20 Motif name: PPARGRXRA

Original motif Reverse complement motif
Consensus sequence: BTRGGDCARAGGKCA Consensus sequence: TGRCCTKTGHCCKAB

Best Matches for Motif ID 20 (Highest to Lowest)

Motif ID: UP00067
Motif name: Lef1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 15
Similarity score: 0.0304954

Alignment:
VDDAGATCAAAGGKDDD
-BTRGGDCARAGGKCA-

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATCTDDV Consensus sequence: VDDAGATCAAAGGKDDD


Motif ID: UP00058
Motif name: Tcf3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 15
Similarity score: 0.0319475

Alignment:
HHHASATCAAAGVRHHH
-BTRGGDCARAGGKCA-

Original motif Reverse complement motif
Consensus sequence: HHHASATCAAAGVRHHH Consensus sequence: HHHKVCTTTGATSTHHH


Motif ID: UP00054
Motif name: Tcf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 15
Similarity score: 0.032779

Alignment:
BHHASATCAAAGGAHHH
-BTRGGDCARAGGKCA-

Original motif Reverse complement motif
Consensus sequence: BHHASATCAAAGGAHHH Consensus sequence: HHHTCCTTTGATSTHHV


Motif ID: UP00082
Motif name: Zfp187_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 15
Similarity score: 0.0334185

Alignment:
VHMDGGACVAGGRCDH
BTRGGDCARAGGKCA-

Original motif Reverse complement motif
Consensus sequence: DDGMCCTBGTCCHYHV Consensus sequence: VHMDGGACVAGGRCDH


Motif ID: UP00062
Motif name: Sox4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 15
Similarity score: 0.0352539

Alignment:
HBDDDAACAAAGRVBHH
-BTRGGDCARAGGKCA-

Original motif Reverse complement motif
Consensus sequence: HBDDDAACAAAGRVBHH Consensus sequence: HHBBMCTTTGTTHDDBH


Motif ID: UP00030
Motif name: Sox11_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 15
Similarity score: 0.0358782

Alignment:
HBDDRAACAAAGRABHH
-BTRGGDCARAGGKCA-

Original motif Reverse complement motif
Consensus sequence: HBDDRAACAAAGRABHH Consensus sequence: HHBTMCTTTGTTMDDVH


Motif ID: UP00101
Motif name: Sox12_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 15
Similarity score: 0.0374729

Alignment:
HDTMCTTTGTSTVDBB
TGRCCTKTGHCCKAB-

Original motif Reverse complement motif
Consensus sequence: VVDBASACAAAGRADH Consensus sequence: HDTMCTTTGTSTVDBB


Motif ID: UP00083
Motif name: Tcf7l2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 15
Similarity score: 0.0379757

Alignment:
BDDASATCAAAGGMDDD
-BTRGGDCARAGGKCA-

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATSTDDV Consensus sequence: BDDASATCAAAGGMDDD


Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 15
Similarity score: 0.0382733

Alignment:
DHHDGGGCGRGGKHBH
BTRGGDCARAGGKCA-

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH


Motif ID: UP00055
Motif name: Hbp1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 15
Similarity score: 0.0397168

Alignment:
HBTHVACAATGGGMDHD
BTRGGDCARAGGKCA--

Original motif Reverse complement motif
Consensus sequence: DDDYCCCATTGTVHABH Consensus sequence: HBTHVACAATGGGMDHD


Dataset #: 2 Motif ID: 21 Motif name: PLAG1

Original motif Reverse complement motif
Consensus sequence: GGGGCCCAAGGGGG Consensus sequence: CCCCCTTGGGCCCC

Best Matches for Motif ID 21 (Highest to Lowest)

Motif ID: UP00102
Motif name: Zic1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0499525

Alignment:
CCCCCCCGGGGGHB
CCCCCTTGGGCCCC

Original motif Reverse complement motif
Consensus sequence: BHCCCCCGGGGGGG Consensus sequence: CCCCCCCGGGGGHB


Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0540613

Alignment:
BTBVTCVTGGGTGGTCMVVDVBB
---------CCCCCTTGGGCCCC

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB


Motif ID: UP00057
Motif name: Zic2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0548411

Alignment:
BMCCCCCGGGGGGGB
-CCCCCTTGGGCCCC

Original motif Reverse complement motif
Consensus sequence: BMCCCCCGGGGGGGB Consensus sequence: VCCCCCCCGGGGGRB


Motif ID: UP00005
Motif name: Tcfap2a_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0556785

Alignment:
BDGHCCWBVGGKDH
GGGGCCCAAGGGGG

Original motif Reverse complement motif
Consensus sequence: HHRCCBBWGGDCDB Consensus sequence: BDGHCCWBVGGKDH


Motif ID: UP00006
Motif name: Zic3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.056976

Alignment:
VCCCCCCCGGGGGRB
-CCCCCTTGGGCCCC

Original motif Reverse complement motif
Consensus sequence: BMCCCCCGGGGGGGB Consensus sequence: VCCCCCCCGGGGGRB


Motif ID: UP00540
Motif name: Gli3_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 14
Similarity score: 0.0573495

Alignment:
HDGHHBHRGACCACCCGSVDVG
CCCCCTTGGGCCCC--------

Original motif Reverse complement motif
Consensus sequence: HDGHHBHRGACCACCCGSVDVG Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH


Motif ID: UP00540
Motif name: Gli3_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 14
Similarity score: 0.0579022

Alignment:
VMYDHDGMCCHCCKBGVVAAVH
--------CCCCCTTGGGCCCC

Original motif Reverse complement motif
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH


Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 14
Similarity score: 0.0580662

Alignment:
DVMHHDHKGACCCTCCTSVCBH
CCCCCTTGGGCCCC--------

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH


Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0597453

Alignment:
HGDHVHKGACCACCCGGBGBGDB
---------CCCCCTTGGGCCCC

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB


Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0598088

Alignment:
DBCCCCCCCCCCMYC
-CCCCCTTGGGCCCC

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD


Dataset #: 2 Motif ID: 22 Motif name: NR2F1

Original motif Reverse complement motif
Consensus sequence: TGAMCTTTGMMCYT Consensus sequence: AKGYYCAAAGRTCA

Best Matches for Motif ID 22 (Highest to Lowest)

Motif ID: UP00083
Motif name: Tcf7l2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0452364

Alignment:
DDDYCCTTTGATSTDDV
-TGAMCTTTGMMCYT--

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATSTDDV Consensus sequence: BDDASATCAAAGGMDDD


Motif ID: UP00067
Motif name: Lef1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0453449

Alignment:
VDDAGATCAAAGGKDDD
--AKGYYCAAAGRTCA-

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATCTDDV Consensus sequence: VDDAGATCAAAGGKDDD


Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 14
Similarity score: 0.0461358

Alignment:
DVMHHDHKGACCCTCCTSVCBH
-------TGAMCTTTGMMCYT-

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH


Motif ID: UP00054
Motif name: Tcf7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0461768

Alignment:
BHHASATCAAAGGAHHH
--AKGYYCAAAGRTCA-

Original motif Reverse complement motif
Consensus sequence: BHHASATCAAAGGAHHH Consensus sequence: HHHTCCTTTGATSTHHV


Motif ID: UP00058
Motif name: Tcf3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0473628

Alignment:
HHHASATCAAAGVRHHH
--AKGYYCAAAGRTCA-

Original motif Reverse complement motif
Consensus sequence: HHHASATCAAAGVRHHH Consensus sequence: HHHKVCTTTGATSTHHH


Motif ID: UP00082
Motif name: Zfp187_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0480188

Alignment:
DDGMCCTBGTCCHYHV
TGAMCTTTGMMCYT--

Original motif Reverse complement motif
Consensus sequence: DDGMCCTBGTCCHYHV Consensus sequence: VHMDGGACVAGGRCDH


Motif ID: UP00062
Motif name: Sox4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0495447

Alignment:
HHBBMCTTTGTTHDDBH
-TGAMCTTTGMMCYT--

Original motif Reverse complement motif
Consensus sequence: HBDDDAACAAAGRVBHH Consensus sequence: HHBBMCTTTGTTHDDBH


Motif ID: UP00030
Motif name: Sox11_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0499033

Alignment:
HHBTMCTTTGTTMDDVH
-TGAMCTTTGMMCYT--

Original motif Reverse complement motif
Consensus sequence: HBDDRAACAAAGRABHH Consensus sequence: HHBTMCTTTGTTMDDVH


Motif ID: UP00023
Motif name: Sox30_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0511534

Alignment:
DHDBAACAATDRHHHH
--TGAMCTTTGMMCYT

Original motif Reverse complement motif
Consensus sequence: DHDBAACAATDRHHHH Consensus sequence: HHHHMHATTGTTBDHD


Motif ID: UP00005
Motif name: Tcfap2a_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0516973

Alignment:
BDGHCCWBVGGKDH
AKGYYCAAAGRTCA

Original motif Reverse complement motif
Consensus sequence: HHRCCBBWGGDCDB Consensus sequence: BDGHCCWBVGGKDH


Dataset #: 2 Motif ID: 23 Motif name: MZF1_1-4

Original motif Reverse complement motif
Consensus sequence: BGGGGA Consensus sequence: TCCCCV

Best Matches for Motif ID 23 (Highest to Lowest)

Motif ID: UP00176
Motif name: Crx
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 6
Similarity score: 0

Alignment:
YBWDGGGGATTARCCD
---BGGGGA-------

Original motif Reverse complement motif
Consensus sequence: YBWDGGGGATTARCCD Consensus sequence: DGGMTAATCCCCDWBK


Motif ID: UP00265
Motif name: Pitx3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.00193291

Alignment:
GBHDGCTAATCCCCCB
---------TCCCCV-

Original motif Reverse complement motif
Consensus sequence: VGGGGGATTAGCDDBC Consensus sequence: GBHDGCTAATCCCCCB


Motif ID: UP00239
Motif name: Obox2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 6
Similarity score: 0.00284735

Alignment:
HTARTTAATCCCCCKBD
--------TCCCCV---

Original motif Reverse complement motif
Consensus sequence: DBRGGGGGATTAAMTAH Consensus sequence: HTARTTAATCCCCCKBD


Motif ID: UP00216
Motif name: Obox1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.00461976

Alignment:
DHDGTTAATCCCCKTDD
--------TCCCCV---

Original motif Reverse complement motif
Consensus sequence: DDARGGGGATTAACDHH Consensus sequence: DHDGTTAATCCCCKTDD


Motif ID: UP00160
Motif name: Obox3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 6
Similarity score: 0.00641818

Alignment:
HHWGTTAATCCCCCBBH
--------TCCCCV---

Original motif Reverse complement motif
Consensus sequence: HBVGGGGGATTAACWHH Consensus sequence: HHWGTTAATCCCCCBBH


Motif ID: UP00208
Motif name: Obox5_2284.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0110256

Alignment:
HDVRGGGATTAAHTHHH
--BGGGGA---------

Original motif Reverse complement motif
Consensus sequence: HDVRGGGATTAAHTHHH Consensus sequence: DHHAHTTAATCCCKVDH


Motif ID: UP00143
Motif name: Dobox5
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 10
Number of overlap: 6
Similarity score: 0.0136568

Alignment:
DDHVGGGATTAATHDTH
--BGGGGA---------

Original motif Reverse complement motif
Consensus sequence: DDHVGGGATTAATHDTH Consensus sequence: DADHATTAATCCCBHHH


Motif ID: UP00229
Motif name: Otx1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 10
Number of overlap: 6
Similarity score: 0.0138939

Alignment:
DDDRGGGATTAATWHHB
--BGGGGA---------

Original motif Reverse complement motif
Consensus sequence: DDDRGGGATTAATWHHB Consensus sequence: VHHWATTAATCCCMDHH


Motif ID: UP00267
Motif name: Otx2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.016387

Alignment:
DDDRGGGATTAATHDDH
--BGGGGA---------

Original motif Reverse complement motif
Consensus sequence: DDDRGGGATTAATHDDH Consensus sequence: DDHHATTAATCCCKDHD


Motif ID: UP00153
Motif name: Pitx1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 6
Similarity score: 0.0164951

Alignment:
HBVDRGGGATTAAMDHH
---BGGGGA--------

Original motif Reverse complement motif
Consensus sequence: HBVDRGGGATTAAMDHH Consensus sequence: HHDRTTAATCCCKHBVH


Dataset #: 2 Motif ID: 24 Motif name: Ar

Original motif Reverse complement motif
Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Best Matches for Motif ID 24 (Highest to Lowest)

Motif ID: UP00032
Motif name: Gata3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 22
Similarity score: 0.0676991

Alignment:
HBHDVBWGATHBTATCRVBHHH
HWDAGHACRHHVTGTHCCHVMV

Original motif Reverse complement motif
Consensus sequence: HBHDVBWGATHBTATCRVBHHH Consensus sequence: HHHBBMGATAVHATCWVVDHVH


Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 22
Similarity score: 0.0692146

Alignment:
VVYDDDCHCAVACAATTDBVAC
VRVDGGHACAVDDKGTHCTDWH

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC


Motif ID: UP00050
Motif name: Bhlhb2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 22
Similarity score: 0.0695612

Alignment:
DDHBHBSTCACGTGAHBBDHHM
VRVDGGHACAVDDKGTHCTDWH

Original motif Reverse complement motif
Consensus sequence: RDHDBVDTCACGTGASBHVHDH Consensus sequence: DDHBHBSTCACGTGAHBBDHHM


Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 22
Similarity score: 0.0771346

Alignment:
YDYBDHTMCACGTGGADDBMDGT
-HWDAGHACRHHVTGTHCCHVMV

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM


Motif ID: UP00526
Motif name: Foxn1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 22
Similarity score: 0.0772045

Alignment:
HDWHMHGACGCGCGTRBVVBHW
VRVDGGHACAVDDKGTHCTDWH

Original motif Reverse complement motif
Consensus sequence: WHVBVVMACGCGCGTCDYHWDH Consensus sequence: HDWHMHGACGCGCGTRBVVBHW


Motif ID: UP00526
Motif name: Foxn1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 22
Similarity score: 0.077433

Alignment:
DDRMHBACGCGYGCGTDGBBDB
VRVDGGHACAVDDKGTHCTDWH

Original motif Reverse complement motif
Consensus sequence: DDRMHBACGCGYGCGTDGBBDB Consensus sequence: BDVBCDACGCKCGCGTBHRKHD


Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 22
Similarity score: 0.0776897

Alignment:
VYWVVHCRCCACMCACGAHSBHH
-HWDAGHACRHHVTGTHCCHVMV

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Motif ID: UP00528
Motif name: Foxm1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 22
Similarity score: 0.0787977

Alignment:
MWSMBAARRATGCDCABHATGD
HWDAGHACRHHVTGTHCCHVMV

Original motif Reverse complement motif
Consensus sequence: MWSMBAARRATGCDCABHATGD Consensus sequence: DCATDBTGHGCATKMTTBRSWR


Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 22
Similarity score: 0.0792723

Alignment:
HHBDHDDAACAATDRHHHHHBW
HWDAGHACRHHVTGTHCCHVMV

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH


Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 22
Similarity score: 0.0799314

Alignment:
HVGVSAGGAGGGTCYHHHHYVH
HWDAGHACRHHVTGTHCCHVMV

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH


Dataset #: 2 Motif ID: 25 Motif name: Arnt

Original motif Reverse complement motif
Consensus sequence: CACGTG Consensus sequence: CACGTG

Best Matches for Motif ID 25 (Highest to Lowest)

Motif ID: UP00050
Motif name: Bhlhb2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 6
Similarity score: 0

Alignment:
RDHDBVDTCACGTGASBHVHDH
--------CACGTG--------

Original motif Reverse complement motif
Consensus sequence: RDHDBVDTCACGTGASBHVHDH Consensus sequence: DDHBHBSTCACGTGAHBBDHHM


Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 6
Similarity score: 0.0026425

Alignment:
YDYBDHTMCACGTGGADDBMDGT
--------CACGTG---------

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM


Motif ID: UP00060
Motif name: Max_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0044422

Alignment:
HHVBABCACGTGSTHD
------CACGTG----

Original motif Reverse complement motif
Consensus sequence: DDASCACGTGBTBVDD Consensus sequence: HHVBABCACGTGSTHD


Motif ID: UP00046
Motif name: Tcfe2a_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0.0342153

Alignment:
DHDBHGCACCTGBDDVB
------CACGTG-----

Original motif Reverse complement motif
Consensus sequence: VBHHVCAGGTGCDVDHD Consensus sequence: DHDBHGCACCTGBDDVB


Motif ID: UP00097
Motif name: Mtf1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 6
Similarity score: 0.0471928

Alignment:
HDYTTGCACACGDHBH
--------CACGTG--

Original motif Reverse complement motif
Consensus sequence: DBDHCGTGTGCAAMDH Consensus sequence: HDYTTGCACACGDHBH


Motif ID: UP00249
Motif name: Nkx2-5
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.0482749

Alignment:
HDADCCACTTRAAWTT
-----CACGTG-----

Original motif Reverse complement motif
Consensus sequence: HDADCCACTTRAAWTT Consensus sequence: AAWTTMAAGTGGHTDH


Motif ID: UP00060
Motif name: Max_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0485437

Alignment:
BBGHCACGCGACDD
----CACGTG----

Original motif Reverse complement motif
Consensus sequence: BBGHCACGCGACDD Consensus sequence: HDGTCGCGTGDCVB


Motif ID: UP00231
Motif name: Nkx2-2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0.0497234

Alignment:
DVDTKTCAAGTGGKBDH
------CACGTG-----

Original motif Reverse complement motif
Consensus sequence: HDVRCCACTTGARADBD Consensus sequence: DVDTKTCAAGTGGKBDH


Motif ID: UP00165
Motif name: Titf1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.0498919

Alignment:
AAHYTCAAGTGGBTBV
-----CACGTG-----

Original motif Reverse complement motif
Consensus sequence: BVABCCACTTGAMHTT Consensus sequence: AAHYTCAAGTGGBTBV


Motif ID: UP00147
Motif name: Nkx2-6
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.0544601

Alignment:
DDADCCACTTAAVHTT
-----CACGTG-----

Original motif Reverse complement motif
Consensus sequence: DDADCCACTTAAVHTT Consensus sequence: AAHVTTAAGTGGHTDD


Dataset #: 2 Motif ID: 26 Motif name: ArntAhr

Original motif Reverse complement motif
Consensus sequence: YGCGTG Consensus sequence: CACGCM

Best Matches for Motif ID 26 (Highest to Lowest)

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0

Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
------YGCGTG-----------

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB


Motif ID: UP00002
Motif name: Sp4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.00183587

Alignment:
HHDGBCACGCCTWDB
-----CACGCM----

Original motif Reverse complement motif
Consensus sequence: BDWAGGCGTGBCHHD Consensus sequence: HHDGBCACGCCTWDB


Motif ID: UP00060
Motif name: Max_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.00348048

Alignment:
HDGTCGCGTGDCVB
----YGCGTG----

Original motif Reverse complement motif
Consensus sequence: BBGHCACGCGACDD Consensus sequence: HDGTCGCGTGDCVB


Motif ID: UP00527
Motif name: Foxn4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 6
Similarity score: 0.00526158

Alignment:
TCDAMVBGACGCMAKDDDVBBD
-------CACGCM---------

Original motif Reverse complement motif
Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA Consensus sequence: TCDAMVBGACGCMAKDDDVBBD


Motif ID: UP00042
Motif name: Gm397_second
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 6
Similarity score: 0.00558171

Alignment:
HBGYGTGTGTGCVRVD
---YGCGTG-------

Original motif Reverse complement motif
Consensus sequence: DVMVGCACACACKCVH Consensus sequence: HBGYGTGTGTGCVRVD


Motif ID: UP00097
Motif name: Mtf1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 6
Similarity score: 0.00702416

Alignment:
HDYTTGCACACGDHBH
--------CACGCM--

Original motif Reverse complement motif
Consensus sequence: DBDHCGTGTGCAAMDH Consensus sequence: HDYTTGCACACGDHBH


Motif ID: UP00526
Motif name: Foxn1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 6
Similarity score: 0.0123233

Alignment:
DDRMHBACGCGYGCGTDGBBDB
-------YGCGTG---------

Original motif Reverse complement motif
Consensus sequence: DDRMHBACGCGYGCGTDGBBDB Consensus sequence: BDVBCDACGCKCGCGTBHRKHD


Motif ID: UP00007
Motif name: Egr1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0141579

Alignment:
HCCGCCCCCGCAHB
------CACGCM--

Original motif Reverse complement motif
Consensus sequence: HCCGCCCCCGCAHB Consensus sequence: VHTGCGGGGGCGGH


Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 11
Number of overlap: 6
Similarity score: 0.0144485

Alignment:
BHCBCBCCGGGTGGTCYHVHDCH
-------YGCGTG----------

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB


Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 6
Similarity score: 0.0172109

Alignment:
VHYTCCDWCCGCGTCMMTHWHV
---------YGCGTG-------

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV


Dataset #: 2 Motif ID: 27 Motif name: E2F1

Original motif Reverse complement motif
Consensus sequence: TTTSGCGC Consensus sequence: GCGCSAAA

Best Matches for Motif ID 27 (Highest to Lowest)

Motif ID: UP00001
Motif name: E2F2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0

Alignment:
BBBDTTGGCGCCKWVVD
---TTTSGCGC------

Original motif Reverse complement motif
Consensus sequence: HVBWYGGCGCCAADVBB Consensus sequence: BBBDTTGGCGCCKWVVD


Motif ID: UP00003
Motif name: E2F3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.00182028

Alignment:
HBHWYGGCGCCAMDVBB
------GCGCSAAA---

Original motif Reverse complement motif
Consensus sequence: HBHWYGGCGCCAMDVBB Consensus sequence: BBBDYTGGCGCCKWDBD


Motif ID: UP00072
Motif name: IRC900814_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0237639

Alignment:
DDHTACGACAAAWDDB
----GCGCSAAA----

Original motif Reverse complement motif
Consensus sequence: DDHTACGACAAAWDDB Consensus sequence: BHDWTTTGTCGTAHDD


Motif ID: UP00003
Motif name: E2F3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0275636

Alignment:
WHSGCGCGCCHTDHB
-----GCGCSAAA--

Original motif Reverse complement motif
Consensus sequence: VHDADGGCGCGCSHW Consensus sequence: WHSGCGCGCCHTDHB


Motif ID: UP00065
Motif name: Zfp161_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 8
Similarity score: 0.028109

Alignment:
DMMDGMGCGCGCGCHD
--------GCGCSAAA

Original motif Reverse complement motif
Consensus sequence: DDGCGCGCGCRCHYRD Consensus sequence: DMMDGMGCGCGCGCHD


Motif ID: UP00001
Motif name: E2F2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0296302

Alignment:
VHDARGGCGCGCVHH
--TTTSGCGC-----

Original motif Reverse complement motif
Consensus sequence: VHDARGGCGCGCVHH Consensus sequence: HHVGCGCGCCKTDHB


Motif ID: UP00068
Motif name: Eomes_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0348969

Alignment:
BVHDAGGTGTGAAAHHH
------GCGCSAAA---

Original motif Reverse complement motif
Consensus sequence: BVHDAGGTGTGAAAHHH Consensus sequence: HHHTTTCACACCTDHBV


Motif ID: UP00011
Motif name: Irf6_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.0368278

Alignment:
DHDBTKGTTTCGHTHDD
-------TTTSGCGC--

Original motif Reverse complement motif
Consensus sequence: HDDAHCGAAACYAVDDD Consensus sequence: DHDBTKGTTTCGHTHDD


Motif ID: UP00049
Motif name: Sp100_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0383813

Alignment:
DWTTTCCGHHWAWD
-----GCGCSAAA-

Original motif Reverse complement motif
Consensus sequence: DWTWHHCGGAAAWD Consensus sequence: DWTTTCCGHHWAWD


Motif ID: UP00527
Motif name: Foxn4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 8
Similarity score: 0.0406002

Alignment:
TCDAMVBGACGCMAKDDDVBBD
--------GCGCSAAA------

Original motif Reverse complement motif
Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA Consensus sequence: TCDAMVBGACGCMAKDDDVBBD


Dataset #: 2 Motif ID: 28 Motif name: Egr1

Original motif Reverse complement motif
Consensus sequence: HGCGTGGGCGK Consensus sequence: YCGCCCACGCH

Best Matches for Motif ID 28 (Highest to Lowest)

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 11
Similarity score: 0

Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
------HGCGTGGGCGK------

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB


Motif ID: UP00007
Motif name: Egr1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.00727533

Alignment:
HCCGCCCCCGCAHB
-YCGCCCACGCH--

Original motif Reverse complement motif
Consensus sequence: HCCGCCCCCGCAHB Consensus sequence: VHTGCGGGGGCGGH


Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0262579

Alignment:
MHHHWHYTMCCHCCCACVAABVH
---------YCGCCCACGCH---

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY


Motif ID: UP00540
Motif name: Gli3_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0297053

Alignment:
YBVDMGTGGGTGGTCKVVBVBBT
--HGCGTGGGCGK----------

Original motif Reverse complement motif
Consensus sequence: ABBBBVVRGACCACCCACRDBBM Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0318144

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
----HGCGTGGGCGK--------

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0345009

Alignment:
BVVHAGGGGGCGRDHHB
--HGCGTGGGCGK----

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB


Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0353502

Alignment:
BTBVTCVTGGGTGGTCMVVDVBB
---HGCGTGGGCGK---------

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB


Motif ID: UP00007
Motif name: Egr1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0360229

Alignment:
BHHDTCCCACTCBDBV
--YCGCCCACGCH---

Original motif Reverse complement motif
Consensus sequence: BBHBGAGTGGGAHHDB Consensus sequence: BHHDTCCCACTCBDBV


Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0362743

Alignment:
VYWVVHCRCCACMCACGAHSBHH
--------YCGCCCACGCH----

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Motif ID: UP00097
Motif name: Mtf1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0386944

Alignment:
HDYTTGCACACGDHBH
---YCGCCCACGCH--

Original motif Reverse complement motif
Consensus sequence: DBDHCGTGTGCAAMDH Consensus sequence: HDYTTGCACACGDHBH


Dataset #: 2 Motif ID: 29 Motif name: ESR1

Original motif Reverse complement motif
Consensus sequence: VDBHMAGGTCACCCTGACCY Consensus sequence: MGGTCAGGGTGACCTRDBHV

Best Matches for Motif ID 29 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 20
Similarity score: 0.0658405

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
VDBHMAGGTCACCCTGACCY---

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 20
Similarity score: 0.0689748

Alignment:
VCTBHBVCTTGGWTACVVVVVDB
VDBHMAGGTCACCCTGACCY---

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB


Motif ID: UP00539
Motif name: Gli2_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 20
Similarity score: 0.0701247

Alignment:
CBDMCMGGGTGGTCCHVBVBAH
MGGTCAGGGTGACCTRDBHV--

Original motif Reverse complement motif
Consensus sequence: HTBVVVDGGACCACCCRGRDBG Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH


Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 20
Similarity score: 0.0711267

Alignment:
HVGVSAGGAGGGTCYHHHHYVH
MGGTCAGGGTGACCTRDBHV--

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH


Motif ID: UP00540
Motif name: Gli3_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 20
Similarity score: 0.0742427

Alignment:
CVHBSCGGGTGGTCMHVHHCDH
-VDBHMAGGTCACCCTGACCY-

Original motif Reverse complement motif
Consensus sequence: HDGHHBHRGACCACCCGSVDVG Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH


Motif ID: UP00540
Motif name: Gli3_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 20
Similarity score: 0.0747053

Alignment:
ABBBBVVRGACCACCCACRDBBM
--VDBHMAGGTCACCCTGACCY-

Original motif Reverse complement motif
Consensus sequence: ABBBBVVRGACCACCCACRDBBM Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT


Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 20
Similarity score: 0.0749165

Alignment:
BHCBCBCCGGGTGGTCYHVHDCH
---VDBHMAGGTCACCCTGACCY

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB


Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 20
Similarity score: 0.0759307

Alignment:
BBBDVVRGACCACCCAVGABBAB
-VDBHMAGGTCACCCTGACCY--

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB


Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 20
Similarity score: 0.0762689

Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
-MGGTCAGGGTGACCTRDBHV--

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB


Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 20
Similarity score: 0.0780113

Alignment:
GTVBDAATTGTVTGHGDDHKVB
VDBHMAGGTCACCCTGACCY--

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC


Dataset #: 2 Motif ID: 30 Motif name: ESR2

Original motif Reverse complement motif
Consensus sequence: VHRGGTCABDBTGMCCTB Consensus sequence: BAGGYCABHBTGACCKHV

Best Matches for Motif ID 30 (Highest to Lowest)

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 18
Similarity score: 0.0443894

Alignment:
GTVBDAATTGTVTGHGDDHKVB
---VHRGGTCABDBTGMCCTB-

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 18
Similarity score: 0.049219

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
---VHRGGTCABDBTGMCCTB--

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00050
Motif name: Bhlhb2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0509182

Alignment:
DDHBHBSTCACGTGAHBBDHHM
--VHRGGTCABDBTGMCCTB--

Original motif Reverse complement motif
Consensus sequence: RDHDBVDTCACGTGASBHVHDH Consensus sequence: DDHBHBSTCACGTGAHBBDHHM


Motif ID: UP00540
Motif name: Gli3_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 18
Similarity score: 0.0527075

Alignment:
DVTTVVCVYGGHGGYCHHDMYB
-BAGGYCABHBTGACCKHV---

Original motif Reverse complement motif
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH


Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 18
Similarity score: 0.0541044

Alignment:
WBHHHHHMDATTGTTHDHDVHH
-BAGGYCABHBTGACCKHV---

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH


Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 18
Similarity score: 0.0541108

Alignment:
VCTBHBVCTTGGWTACVVVVVDB
--BAGGYCABHBTGACCKHV---

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB


Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 18
Similarity score: 0.0543733

Alignment:
VDWDARRGACGCGGWHGGAKHV
---VHRGGTCABDBTGMCCTB-

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV


Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 18
Similarity score: 0.0548087

Alignment:
BHCBCBCCGGGTGGTCYHVHDCH
-BAGGYCABHBTGACCKHV----

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB


Motif ID: UP00528
Motif name: Foxm1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 18
Similarity score: 0.055453

Alignment:
DCATDBTGHGCATKMTTBRSWR
----VHRGGTCABDBTGMCCTB

Original motif Reverse complement motif
Consensus sequence: MWSMBAARRATGCDCABHATGD Consensus sequence: DCATDBTGHGCATKMTTBRSWR


Motif ID: UP00032
Motif name: Gata3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 18
Similarity score: 0.0566426

Alignment:
HBHDVBWGATHBTATCRVBHHH
-VHRGGTCABDBTGMCCTB---

Original motif Reverse complement motif
Consensus sequence: HBHDVBWGATHBTATCRVBHHH Consensus sequence: HHHBBMGATAVHATCWVVDHVH


Dataset #: 2 Motif ID: 31 Motif name: Esrrb

Original motif Reverse complement motif
Consensus sequence: CACGTG Consensus sequence: CACGTG

Best Matches for Motif ID 31 (Highest to Lowest)

Motif ID: UP00050
Motif name: Bhlhb2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 6
Similarity score: 0

Alignment:
RDHDBVDTCACGTGASBHVHDH
--------CACGTG--------

Original motif Reverse complement motif
Consensus sequence: RDHDBVDTCACGTGASBHVHDH Consensus sequence: DDHBHBSTCACGTGAHBBDHHM


Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 6
Similarity score: 0.0026425

Alignment:
ACHRBHDTCCACGTGYAHHBMHM
---------CACGTG--------

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM


Motif ID: UP00060
Motif name: Max_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.0044422

Alignment:
DDASCACGTGBTBVDD
----CACGTG------

Original motif Reverse complement motif
Consensus sequence: DDASCACGTGBTBVDD Consensus sequence: HHVBABCACGTGSTHD


Motif ID: UP00046
Motif name: Tcfe2a_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0.0342153

Alignment:
DHDBHGCACCTGBDDVB
------CACGTG-----

Original motif Reverse complement motif
Consensus sequence: VBHHVCAGGTGCDVDHD Consensus sequence: DHDBHGCACCTGBDDVB


Motif ID: UP00097
Motif name: Mtf1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 6
Similarity score: 0.0471928

Alignment:
HDYTTGCACACGDHBH
--------CACGTG--

Original motif Reverse complement motif
Consensus sequence: DBDHCGTGTGCAAMDH Consensus sequence: HDYTTGCACACGDHBH


Motif ID: UP00249
Motif name: Nkx2-5
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.0482749

Alignment:
HDADCCACTTRAAWTT
-----CACGTG-----

Original motif Reverse complement motif
Consensus sequence: HDADCCACTTRAAWTT Consensus sequence: AAWTTMAAGTGGHTDH


Motif ID: UP00060
Motif name: Max_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0485437

Alignment:
BBGHCACGCGACDD
----CACGTG----

Original motif Reverse complement motif
Consensus sequence: BBGHCACGCGACDD Consensus sequence: HDGTCGCGTGDCVB


Motif ID: UP00231
Motif name: Nkx2-2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0.0497234

Alignment:
DVDTKTCAAGTGGKBDH
------CACGTG-----

Original motif Reverse complement motif
Consensus sequence: HDVRCCACTTGARADBD Consensus sequence: DVDTKTCAAGTGGKBDH


Motif ID: UP00165
Motif name: Titf1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.0498919

Alignment:
AAHYTCAAGTGGBTBV
-----CACGTG-----

Original motif Reverse complement motif
Consensus sequence: BVABCCACTTGAMHTT Consensus sequence: AAHYTCAAGTGGBTBV


Motif ID: UP00147
Motif name: Nkx2-6
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.0544601

Alignment:
DDADCCACTTAAVHTT
-----CACGTG-----

Original motif Reverse complement motif
Consensus sequence: DDADCCACTTAAVHTT Consensus sequence: AAHVTTAAGTGGHTDD


Dataset #: 2 Motif ID: 32 Motif name: EWSR1-FLI1

Original motif Reverse complement motif
Consensus sequence: GGAAGGAAGGAAGGAAGG Consensus sequence: CCTTCCTTCCTTCCTTCC

Best Matches for Motif ID 32 (Highest to Lowest)

Motif ID: UP00419
Motif name: Spic
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0442834

Alignment:
----VAAAGMGGAAGTWD
GGAAGGAAGGAAGGAAGG--

Original motif Reverse complement motif
Consensus sequence: VAAAGMGGAAGTWD Consensus sequence: DWACTTCCRCTTTB


Motif ID: UP00055
Motif name: Hbp1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 14
Similarity score: 0.0466226

Alignment:
----VDHATTCATTSAWDDH
CCTTCCTTCCTTCCTTCC----

Original motif Reverse complement motif
Consensus sequence: HHDWTSAATGAATDDB Consensus sequence: VDHATTCATTSAWDDH


Motif ID: UP00035
Motif name: Hic1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.047846

Alignment:
----DDBHGGTTGGCATVBD
GGAAGGAAGGAAGGAAGG--

Original motif Reverse complement motif
Consensus sequence: DBBATGCCAACCHVHH Consensus sequence: DDBHGGTTGGCATVBD


Motif ID: UP00090
Motif name: Elf3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 13
Similarity score: 0.539121

Alignment:
-----TDAMTTCCYYDTD
CCTTCCTTCCTTCCTTCC---

Original motif Reverse complement motif
Consensus sequence: DAHMMGGAARTDA Consensus sequence: TDAMTTCCYYDTD


Motif ID: UP00062
Motif name: Sox4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 13
Similarity score: 0.547912

Alignment:
HHBBMCTTTGTTHDDBH-----
----CCTTCCTTCCTTCCTTCC

Original motif Reverse complement motif
Consensus sequence: HBDDDAACAAAGRVBHH Consensus sequence: HHBBMCTTTGTTHDDBH


Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 0.548284

Alignment:
-----GKRGGGGGGGGGGBD
GGAAGGAAGGAAGGAAGG--

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD


Motif ID: UP00030
Motif name: Sox11_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 13
Similarity score: 0.54837

Alignment:
-----HHBTMCTTTGTTMDDVH
CCTTCCTTCCTTCCTTCC-----

Original motif Reverse complement motif
Consensus sequence: HBDDRAACAAAGRABHH Consensus sequence: HHBTMCTTTGTTMDDVH


Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 12
Similarity score: 1.04069

Alignment:
HVGVSAGGAGGGTCYHHHHYVH------
------GGAAGGAAGGAAGGAAGG----

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH


Motif ID: UP00409
Motif name: Elf5
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 1.04159

Alignment:
------BWAHSMGGAAGTWD
GGAAGGAAGGAAGGAAGG--

Original motif Reverse complement motif
Consensus sequence: BWAHSMGGAAGTWD Consensus sequence: DWACTTCCRSDTWV


Motif ID: UP00056
Motif name: Rfx4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 12
Similarity score: 1.04349

Alignment:
------HHBCHTRGWTACVVH
GGAAGGAAGGAAGGAAGG------

Original motif Reverse complement motif
Consensus sequence: HHBCHTRGWTACVVH Consensus sequence: HVVGTAWCKADGBHH


Dataset #: 2 Motif ID: 33 Motif name: HIF1AARNT

Original motif Reverse complement motif
Consensus sequence: VBACGTGV Consensus sequence: VCACGTBV

Best Matches for Motif ID 33 (Highest to Lowest)

Motif ID: UP00097
Motif name: Mtf1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0

Alignment:
HDYTTGCACACGDHBH
-------VCACGTBV-

Original motif Reverse complement motif
Consensus sequence: DBDHCGTGTGCAAMDH Consensus sequence: HDYTTGCACACGDHBH


Motif ID: UP00060
Motif name: Max_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.000574345

Alignment:
HHVBABCACGTGSTHD
-----VCACGTBV---

Original motif Reverse complement motif
Consensus sequence: DDASCACGTGBTBVDD Consensus sequence: HHVBABCACGTGSTHD


Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 8
Similarity score: 0.00642455

Alignment:
YDYBDHTMCACGTGGADDBMDGT
-------VBACGTGV--------

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM


Motif ID: UP00084
Motif name: Gmeb1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0131171

Alignment:
BVVDVRYACGTRYVBHB
-----VBACGTGV----

Original motif Reverse complement motif
Consensus sequence: BHBBKKACGTMMVDBVB Consensus sequence: BVVDVRYACGTRYVBHB


Motif ID: UP00050
Motif name: Bhlhb2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 8
Similarity score: 0.014006

Alignment:
RDHDBVDTCACGTGASBHVHDH
-------VCACGTBV-------

Original motif Reverse complement motif
Consensus sequence: RDHDBVDTCACGTGASBHVHDH Consensus sequence: DDHBHBSTCACGTGAHBBDHHM


Motif ID: UP00046
Motif name: Tcfe2a_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0184296

Alignment:
VBHHVCAGGTGCDVDHD
----VBACGTGV-----

Original motif Reverse complement motif
Consensus sequence: VBHHVCAGGTGCDVDHD Consensus sequence: DHDBHGCACCTGBDDVB


Motif ID: UP00068
Motif name: Eomes_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0188154

Alignment:
VVBVCKACACCTHVBV
------VCACGTBV--

Original motif Reverse complement motif
Consensus sequence: VBVDAGGTGTYGVBBV Consensus sequence: VVBVCKACACCTHVBV


Motif ID: UP00026
Motif name: Zscan4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 8
Similarity score: 0.0189568

Alignment:
DHVDTGTGCACAYAHDH
-VBACGTGV--------

Original motif Reverse complement motif
Consensus sequence: DHVDTGTGCACAYAHDH Consensus sequence: HDHTMTGTGCACADVHD


Motif ID: UP00042
Motif name: Gm397_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 8
Similarity score: 0.0198987

Alignment:
HHRTATGTGCACATHHD
--VBACGTGV-------

Original motif Reverse complement motif
Consensus sequence: HHDATGTGCACATAMDH Consensus sequence: HHRTATGTGCACATHHD


Motif ID: UP00060
Motif name: Max_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.021967

Alignment:
BBGHCACGCGACDD
---VCACGTBV---

Original motif Reverse complement motif
Consensus sequence: BBGHCACGCGACDD Consensus sequence: HDGTCGCGTGDCVB


Dataset #: 2 Motif ID: 34 Motif name: HNF4A

Original motif Reverse complement motif
Consensus sequence: RGGBCAAAGKYCA Consensus sequence: TGMYCTTTGBCCK

Best Matches for Motif ID 34 (Highest to Lowest)

Motif ID: UP00058
Motif name: Tcf3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.0357776

Alignment:
HHHASATCAAAGVRHHH
---RGGBCAAAGKYCA-

Original motif Reverse complement motif
Consensus sequence: HHHASATCAAAGVRHHH Consensus sequence: HHHKVCTTTGATSTHHH


Motif ID: UP00054
Motif name: Tcf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.0357792

Alignment:
BHHASATCAAAGGAHHH
---RGGBCAAAGKYCA-

Original motif Reverse complement motif
Consensus sequence: BHHASATCAAAGGAHHH Consensus sequence: HHHTCCTTTGATSTHHV


Motif ID: UP00067
Motif name: Lef1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 13
Similarity score: 0.0359011

Alignment:
VDDAGATCAAAGGKDDD
---RGGBCAAAGKYCA-

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATCTDDV Consensus sequence: VDDAGATCAAAGGKDDD


Motif ID: UP00083
Motif name: Tcf7l2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.0360786

Alignment:
BDDASATCAAAGGMDDD
---RGGBCAAAGKYCA-

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATSTDDV Consensus sequence: BDDASATCAAAGGMDDD


Motif ID: UP00046
Motif name: Tcfe2a_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 13
Similarity score: 0.0405764

Alignment:
HVDDVCAGATGKYHBBV
-RGGBCAAAGKYCA---

Original motif Reverse complement motif
Consensus sequence: HVDDVCAGATGKYHBBV Consensus sequence: VBBDMYCATCTGVHHBH


Motif ID: UP00062
Motif name: Sox4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.0409915

Alignment:
HHBBMCTTTGTTHDDBH
-TGMYCTTTGBCCK---

Original motif Reverse complement motif
Consensus sequence: HBDDDAACAAAGRVBHH Consensus sequence: HHBBMCTTTGTTHDDBH


Motif ID: UP00101
Motif name: Sox12_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 0.0413218

Alignment:
HDTMCTTTGTSTVDBB
TGMYCTTTGBCCK---

Original motif Reverse complement motif
Consensus sequence: VVDBASACAAAGRADH Consensus sequence: HDTMCTTTGTSTVDBB


Motif ID: UP00030
Motif name: Sox11_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.0421105

Alignment:
HHBTMCTTTGTTMDDVH
-TGMYCTTTGBCCK---

Original motif Reverse complement motif
Consensus sequence: HBDDRAACAAAGRABHH Consensus sequence: HHBTMCTTTGTTMDDVH


Motif ID: UP00086
Motif name: Irf3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 0.0442004

Alignment:
DDAGAADGGDSCDV
RGGBCAAAGKYCA-

Original motif Reverse complement motif
Consensus sequence: DDAGAADGGDSCDV Consensus sequence: BHGSDCCDTTCTHH


Motif ID: UP00082
Motif name: Zfp187_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 13
Similarity score: 0.0446884

Alignment:
VHMDGGACVAGGRCDH
---RGGBCAAAGKYCA

Original motif Reverse complement motif
Consensus sequence: DDGMCCTBGTCCHYHV Consensus sequence: VHMDGGACVAGGRCDH


Dataset #: 2 Motif ID: 35 Motif name: INSM1

Original motif Reverse complement motif
Consensus sequence: TGYCAGGGGGCR Consensus sequence: MGCCCCCTGMCA

Best Matches for Motif ID 35 (Highest to Lowest)

Motif ID: UP00022
Motif name: Zfp740_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 12
Similarity score: 0.00085101

Alignment:
HVKDCCGGGGGGWADDD
--TGYCAGGGGGCR---

Original motif Reverse complement motif
Consensus sequence: DDDTWCCCCCCGGDRVH Consensus sequence: HVKDCCGGGGGGWADDD


Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 12
Similarity score: 0.00406431

Alignment:
BVVHAGGGGGCGRDHHB
TGYCAGGGGGCR-----

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB


Motif ID: UP00047
Motif name: Zbtb7b_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.00486866

Alignment:
VHWTTHGGGGGGVDD
--TGYCAGGGGGCR-

Original motif Reverse complement motif
Consensus sequence: DDVCCCCCCHAAWHB Consensus sequence: VHWTTHGGGGGGVDD


Motif ID: UP00079
Motif name: Esrra_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 12
Similarity score: 0.00862553

Alignment:
VKBBAGGGGTCAHDBBH
TGYCAGGGGGCR-----

Original motif Reverse complement motif
Consensus sequence: VKBBAGGGGTCAHDBBH Consensus sequence: DBBHHTGACCCCTBBYV


Motif ID: UP00024
Motif name: Glis2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.00936306

Alignment:
HKBBGGGGGGTCVHHH
-TGYCAGGGGGCR---

Original motif Reverse complement motif
Consensus sequence: HHHVGACCCCCCVBRD Consensus sequence: HKBBGGGGGGTCVHHH


Motif ID: UP00066
Motif name: Hnf4a_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0123592

Alignment:
BDBVMGGGGTCAABHDV
TGYCAGGGGGCR-----

Original motif Reverse complement motif
Consensus sequence: BDBVMGGGGTCAABHDV Consensus sequence: BHHVTTGACCCCYVVDB


Motif ID: UP00007
Motif name: Egr1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0155167

Alignment:
HCCGCCCCCGCAHB
--MGCCCCCTGMCA

Original motif Reverse complement motif
Consensus sequence: HCCGCCCCCGCAHB Consensus sequence: VHTGCGGGGGCGGH


Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0176638

Alignment:
HVBCCCCCCCCMHHHB
---MGCCCCCTGMCA-

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD


Motif ID: UP00043
Motif name: Bcl6b_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 12
Similarity score: 0.0182432

Alignment:
BHHHWGGGGCGGBBVH
TGYCAGGGGGCR----

Original motif Reverse complement motif
Consensus sequence: HBBBCCGCCCCWHHHV Consensus sequence: BHHHWGGGGCGGBBVH


Motif ID: UP00070
Motif name: Gcm1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 12
Similarity score: 0.0200587

Alignment:
BYMBKCCCCTATDVBHD
--MGCCCCCTGMCA---

Original motif Reverse complement motif
Consensus sequence: DDBVHATAGGGGRBRMB Consensus sequence: BYMBKCCCCTATDVBHD


Dataset #: 2 Motif ID: 36 Motif name: Klf4

Original motif Reverse complement motif
Consensus sequence: DGGGYGKGGC Consensus sequence: GCCYCMCCCD

Best Matches for Motif ID 36 (Highest to Lowest)

Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0

Alignment:
DHHDGGGCGRGGKHBH
---DGGGYGKGGC---

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH


Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.0153308

Alignment:
DBCCCCCCCCCCMYC
---GCCYCMCCCD--

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD


Motif ID: UP00002
Motif name: Sp4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0186791

Alignment:
BDWAGGCGTGBCHHD
--DGGGYGKGGC---

Original motif Reverse complement motif
Consensus sequence: BDWAGGCGTGBCHHD Consensus sequence: HHDGBCACGCCTWDB


Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0218399

Alignment:
HVBCCCCCCCCMHHHB
--GCCYCMCCCD----

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD


Motif ID: UP00007
Motif name: Egr1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0249586

Alignment:
VHTGCGGGGGCGGH
GCCYCMCCCD----

Original motif Reverse complement motif
Consensus sequence: HCCGCCCCCGCAHB Consensus sequence: VHTGCGGGGGCGGH


Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 10
Similarity score: 0.0299159

Alignment:
BVVHAGGGGGCGRDHHB
------DGGGYGKGGC-

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB


Motif ID: UP00000
Motif name: Smad3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0308595

Alignment:
BHBHDTGGCGGGGBDHD
----DGGGYGKGGC---

Original motif Reverse complement motif
Consensus sequence: DHHBCCCCGCCAHHBHB Consensus sequence: BHBHDTGGCGGGGBDHD


Motif ID: UP00047
Motif name: Zbtb7b_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0345891

Alignment:
DDVCCCCCCHAAWHB
GCCYCMCCCD-----

Original motif Reverse complement motif
Consensus sequence: DDVCCCCCCHAAWHB Consensus sequence: VHWTTHGGGGGGVDD


Motif ID: UP00043
Motif name: Bcl6b_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.0346735

Alignment:
HBBBCCGCCCCWHHHV
--GCCYCMCCCD----

Original motif Reverse complement motif
Consensus sequence: HBBBCCGCCCCWHHHV Consensus sequence: BHHHWGGGGCGGBBVH


Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 10
Similarity score: 0.0351496

Alignment:
MHHHWHYTMCCHCCCACVAABVH
------GCCYCMCCCD-------

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY


Dataset #: 2 Motif ID: 37 Motif name: MIZF

Original motif Reverse complement motif
Consensus sequence: BAACGTCCGC Consensus sequence: GCGGACGTTV

Best Matches for Motif ID 37 (Highest to Lowest)

Motif ID: UP00419
Motif name: Spic
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0

Alignment:
DWACTTCCRCTTTB
BAACGTCCGC----

Original motif Reverse complement motif
Consensus sequence: VAAAGMGGAAGTWD Consensus sequence: DWACTTCCRCTTTB


Motif ID: UP00409
Motif name: Elf5
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.00379999

Alignment:
DWACTTCCRSDTWV
BAACGTCCGC----

Original motif Reverse complement motif
Consensus sequence: BWAHSMGGAAGTWD Consensus sequence: DWACTTCCRSDTWV


Motif ID: UP00413
Motif name: Elf4
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.0124101

Alignment:
DBBHACTTCCGGKWTH
--BAACGTCCGC----

Original motif Reverse complement motif
Consensus sequence: DBBHACTTCCGGKWTH Consensus sequence: HAWYCCGGAAGTHBBD


Motif ID: UP00404
Motif name: Elf2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0128348

Alignment:
DBBHACTTCCGGDWDB
--BAACGTCCGC----

Original motif Reverse complement motif
Consensus sequence: DBBHACTTCCGGDWDB Consensus sequence: BDWDCCGGAAGTHBBD


Motif ID: UP00085
Motif name: Sfpi1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.0141516

Alignment:
HDACTTCCBCWTDV
BAACGTCCGC----

Original motif Reverse complement motif
Consensus sequence: BDAWGVGGAAGTDH Consensus sequence: HDACTTCCBCWTDV


Motif ID: UP00423
Motif name: Gm5454
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0144665

Alignment:
DVHACCGGAAGTHDDV
----GCGGACGTTV--

Original motif Reverse complement motif
Consensus sequence: VDHHACTTCCGGTHVH Consensus sequence: DVHACCGGAAGTHDDV


Motif ID: UP00412
Motif name: Etv5
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0155825

Alignment:
DHHACCGGAWGTTDDV
----GCGGACGTTV--

Original motif Reverse complement motif
Consensus sequence: VDHAACWTCCGGTHHH Consensus sequence: DHHACCGGAWGTTDDV


Motif ID: UP00015
Motif name: Ehf_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 10
Similarity score: 0.0162018

Alignment:
VBDABCCGGAAGTDD
-----GCGGACGTTV

Original motif Reverse complement motif
Consensus sequence: VBDABCCGGAAGTDD Consensus sequence: DDACTTCCGGBTHBB


Motif ID: UP00418
Motif name: Etv6
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.0171234

Alignment:
DVHBTACTTCCGGHTHB
---BAACGTCCGC----

Original motif Reverse complement motif
Consensus sequence: DVHBTACTTCCGGHTHB Consensus sequence: BHAHCCGGAAGTABDVD


Motif ID: UP00421
Motif name: Etv1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0184147

Alignment:
MVHBACCGGAAGTVDVH
-----GCGGACGTTV--

Original motif Reverse complement motif
Consensus sequence: MVHBACCGGAAGTVDVH Consensus sequence: HBDBACTTCCGGTBHVY


Dataset #: 2 Motif ID: 38 Motif name: Myc

Original motif Reverse complement motif
Consensus sequence: VGCACGTGGH Consensus sequence: DCCACGTGCV

Best Matches for Motif ID 38 (Highest to Lowest)

Motif ID: UP00060
Motif name: Max_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0

Alignment:
DDASCACGTGBTBVDD
--VGCACGTGGH----

Original motif Reverse complement motif
Consensus sequence: DDASCACGTGBTBVDD Consensus sequence: HHVBABCACGTGSTHD


Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 10
Similarity score: 0.00631885

Alignment:
ACHRBHDTCCACGTGYAHHBMHM
-------DCCACGTGCV------

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM


Motif ID: UP00050
Motif name: Bhlhb2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 10
Similarity score: 0.00821668

Alignment:
DDHBHBSTCACGTGAHBBDHHM
------DCCACGTGCV------

Original motif Reverse complement motif
Consensus sequence: RDHDBVDTCACGTGASBHVHDH Consensus sequence: DDHBHBSTCACGTGAHBBDHHM


Motif ID: UP00046
Motif name: Tcfe2a_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0140005

Alignment:
DHDBHGCACCTGBDDVB
----VGCACGTGGH---

Original motif Reverse complement motif
Consensus sequence: VBHHVCAGGTGCDVDHD Consensus sequence: DHDBHGCACCTGBDDVB


Motif ID: UP00060
Motif name: Max_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0308912

Alignment:
BBGHCACGCGACDD
--VGCACGTGGH--

Original motif Reverse complement motif
Consensus sequence: BBGHCACGCGACDD Consensus sequence: HDGTCGCGTGDCVB


Motif ID: UP00165
Motif name: Titf1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.0311723

Alignment:
BVABCCACTTGAMHTT
---DCCACGTGCV---

Original motif Reverse complement motif
Consensus sequence: BVABCCACTTGAMHTT Consensus sequence: AAHYTCAAGTGGBTBV


Motif ID: UP00249
Motif name: Nkx2-5
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.031308

Alignment:
HDADCCACTTRAAWTT
---DCCACGTGCV---

Original motif Reverse complement motif
Consensus sequence: HDADCCACTTRAAWTT Consensus sequence: AAWTTMAAGTGGHTDH


Motif ID: UP00231
Motif name: Nkx2-2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.0334845

Alignment:
HDVRCCACTTGARADBD
---DCCACGTGCV----

Original motif Reverse complement motif
Consensus sequence: HDVRCCACTTGARADBD Consensus sequence: DVDTKTCAAGTGGKBDH


Motif ID: UP00147
Motif name: Nkx2-6
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0345548

Alignment:
DDADCCACTTAAVHTT
---DCCACGTGCV---

Original motif Reverse complement motif
Consensus sequence: DDADCCACTTAAVHTT Consensus sequence: AAHVTTAAGTGGHTDD


Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 10
Similarity score: 0.0363818

Alignment:
VDWDARRGACGCGGWHGGAKHV
-----VGCACGTGGH-------

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV


Dataset #: 2 Motif ID: 39 Motif name: MYCMAX

Original motif Reverse complement motif
Consensus sequence: RASCACGTGGT Consensus sequence: ACCACGTGSTM

Best Matches for Motif ID 39 (Highest to Lowest)

Motif ID: UP00060
Motif name: Max_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0

Alignment:
HHVBABCACGTGSTHD
---RASCACGTGGT--

Original motif Reverse complement motif
Consensus sequence: DDASCACGTGBTBVDD Consensus sequence: HHVBABCACGTGSTHD


Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 11
Similarity score: 0.025477

Alignment:
ACHRBHDTCCACGTGYAHHBMHM
-------ACCACGTGSTM-----

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM


Motif ID: UP00050
Motif name: Bhlhb2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 11
Similarity score: 0.033078

Alignment:
RDHDBVDTCACGTGASBHVHDH
-----RASCACGTGGT------

Original motif Reverse complement motif
Consensus sequence: RDHDBVDTCACGTGASBHVHDH Consensus sequence: DDHBHBSTCACGTGAHBBDHHM


Motif ID: UP00046
Motif name: Tcfe2a_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0375583

Alignment:
VBHHVCAGGTGCDVDHD
---ACCACGTGSTM---

Original motif Reverse complement motif
Consensus sequence: VBHHVCAGGTGCDVDHD Consensus sequence: DHDBHGCACCTGBDDVB


Motif ID: UP00046
Motif name: Tcfe2a_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0452419

Alignment:
HVDDVCAGATGKYHBBV
--RASCACGTGGT----

Original motif Reverse complement motif
Consensus sequence: HVDDVCAGATGKYHBBV Consensus sequence: VBBDMYCATCTGVHHBH


Motif ID: UP00036
Motif name: Myf6_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0471968

Alignment:
VVDBAACAGBTGBYHB
---RASCACGTGGT--

Original motif Reverse complement motif
Consensus sequence: VVDBAACAGBTGBYHB Consensus sequence: BDKVCABCTGTTBDBV


Motif ID: UP00099
Motif name: Ascl2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0504418

Alignment:
HHDVVGCAGCTGVBKVB
---RASCACGTGGT---

Original motif Reverse complement motif
Consensus sequence: BBYVVCAGCTGCBVHHD Consensus sequence: HHDVVGCAGCTGVBKVB


Motif ID: UP00084
Motif name: Gmeb1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0522039

Alignment:
HHMACKACGTMGBVCD
---ACCACGTGSTM--

Original motif Reverse complement motif
Consensus sequence: DGVBCRACGTYGTYHH Consensus sequence: HHMACKACGTMGBVCD


Motif ID: UP00165
Motif name: Titf1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0554094

Alignment:
BVABCCACTTGAMHTT
---ACCACGTGSTM--

Original motif Reverse complement motif
Consensus sequence: BVABCCACTTGAMHTT Consensus sequence: AAHYTCAAGTGGBTBV


Motif ID: UP00060
Motif name: Max_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0557594

Alignment:
HDGTCGCGTGDCVB
-RASCACGTGGT--

Original motif Reverse complement motif
Consensus sequence: BBGHCACGCGACDD Consensus sequence: HDGTCGCGTGDCVB


Dataset #: 2 Motif ID: 40 Motif name: Mycn

Original motif Reverse complement motif
Consensus sequence: HSCACGTGGC Consensus sequence: GCCACGTGSD

Best Matches for Motif ID 40 (Highest to Lowest)

Motif ID: UP00060
Motif name: Max_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0

Alignment:
DDASCACGTGBTBVDD
--HSCACGTGGC----

Original motif Reverse complement motif
Consensus sequence: DDASCACGTGBTBVDD Consensus sequence: HHVBABCACGTGSTHD


Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 10
Similarity score: 0.00783793

Alignment:
ACHRBHDTCCACGTGYAHHBMHM
-------GCCACGTGSD------

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM


Motif ID: UP00050
Motif name: Bhlhb2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 10
Similarity score: 0.0132858

Alignment:
DDHBHBSTCACGTGAHBBDHHM
------GCCACGTGSD------

Original motif Reverse complement motif
Consensus sequence: RDHDBVDTCACGTGASBHVHDH Consensus sequence: DDHBHBSTCACGTGAHBBDHHM


Motif ID: UP00046
Motif name: Tcfe2a_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.0227933

Alignment:
VBHHVCAGGTGCDVDHD
---GCCACGTGSD----

Original motif Reverse complement motif
Consensus sequence: VBHHVCAGGTGCDVDHD Consensus sequence: DHDBHGCACCTGBDDVB


Motif ID: UP00060
Motif name: Max_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0257011

Alignment:
BBGHCACGCGACDD
--HSCACGTGGC--

Original motif Reverse complement motif
Consensus sequence: BBGHCACGCGACDD Consensus sequence: HDGTCGCGTGDCVB


Motif ID: UP00165
Motif name: Titf1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0344833

Alignment:
BVABCCACTTGAMHTT
---GCCACGTGSD---

Original motif Reverse complement motif
Consensus sequence: BVABCCACTTGAMHTT Consensus sequence: AAHYTCAAGTGGBTBV


Motif ID: UP00231
Motif name: Nkx2-2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.035228

Alignment:
HDVRCCACTTGARADBD
---GCCACGTGSD----

Original motif Reverse complement motif
Consensus sequence: HDVRCCACTTGARADBD Consensus sequence: DVDTKTCAAGTGGKBDH


Motif ID: UP00084
Motif name: Gmeb1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0358581

Alignment:
BVVDVRYACGTRYVBHB
----GCCACGTGSD---

Original motif Reverse complement motif
Consensus sequence: BHBBKKACGTMMVDBVB Consensus sequence: BVVDVRYACGTRYVBHB


Motif ID: UP00084
Motif name: Gmeb1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.03725

Alignment:
HHMACKACGTMGBVCD
---HSCACGTGGC---

Original motif Reverse complement motif
Consensus sequence: DGVBCRACGTYGTYHH Consensus sequence: HHMACKACGTMGBVCD


Motif ID: UP00526
Motif name: Foxn1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 10
Similarity score: 0.0383187

Alignment:
WHVBVVMACGCGCGTCDYHWDH
------HSCACGTGGC------

Original motif Reverse complement motif
Consensus sequence: WHVBVVMACGCGCGTCDYHWDH Consensus sequence: HDWHMHGACGCGCGTRBVVBHW


Dataset #: 2 Motif ID: 41 Motif name: MZF1_5-13

Original motif Reverse complement motif
Consensus sequence: BKAGGGGDAD Consensus sequence: BTHCCCCTYB

Best Matches for Motif ID 41 (Highest to Lowest)

Motif ID: UP00022
Motif name: Zfp740_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.0090535

Alignment:
DDDTWCCCCCCGGDRVH
---BTHCCCCTYB----

Original motif Reverse complement motif
Consensus sequence: DDDTWCCCCCCGGDRVH Consensus sequence: HVKDCCGGGGGGWADDD


Motif ID: UP00007
Motif name: Egr1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.00910178

Alignment:
BBHBGAGTGGGAHHDB
---BKAGGGGDAD---

Original motif Reverse complement motif
Consensus sequence: BBHBGAGTGGGAHHDB Consensus sequence: BHHDTCCCACTCBDBV


Motif ID: UP00070
Motif name: Gcm1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 10
Similarity score: 0.0101177

Alignment:
DDBVHATAGGGGRBRMB
-----BKAGGGGDAD--

Original motif Reverse complement motif
Consensus sequence: DDBVHATAGGGGRBRMB Consensus sequence: BYMBKCCCCTATDVBHD


Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 10
Similarity score: 0.0103225

Alignment:
GKRGGGGGGGGGGBD
BKAGGGGDAD-----

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD


Motif ID: UP00099
Motif name: Ascl2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 10
Similarity score: 0.0126235

Alignment:
HVDVGGGHGGGGDBHB
-----BKAGGGGDAD-

Original motif Reverse complement motif
Consensus sequence: BHVDCCCCDCCCBDBH Consensus sequence: HVDVGGGHGGGGDBHB


Motif ID: UP00013
Motif name: Gabpa_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.013531

Alignment:
DBVVDRSGGAWKVHKG
-BKAGGGGDAD-----

Original motif Reverse complement motif
Consensus sequence: CYDBYWTCCSMHBVVH Consensus sequence: DBVVDRSGGAWKVHKG


Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0152996

Alignment:
BHHDYGGGGGGGGBVD
---BKAGGGGDAD---

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD


Motif ID: UP00055
Motif name: Hbp1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0176527

Alignment:
DDDYCCCATTGTVHABH
-BTHCCCCTYB------

Original motif Reverse complement motif
Consensus sequence: DDDYCCCATTGTVHABH Consensus sequence: HBTHVACAATGGGMDHD


Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 10
Similarity score: 0.0183345

Alignment:
BDHHMCGCCCCCTHVBB
-----BTHCCCCTYB--

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB


Motif ID: UP00239
Motif name: Obox2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.019782

Alignment:
DBRGGGGGATTAAMTAH
BKAGGGGDAD-------

Original motif Reverse complement motif
Consensus sequence: DBRGGGGGATTAAMTAH Consensus sequence: HTARTTAATCCCCCKBD


Dataset #: 2 Motif ID: 42 Motif name: NFKB1

Original motif Reverse complement motif
Consensus sequence: GGGGRTTCCCC Consensus sequence: GGGGAAKCCCC

Best Matches for Motif ID 42 (Highest to Lowest)

Motif ID: UP00021
Motif name: Zfp281_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0371794

Alignment:
VDDAHTGGGGGTHWYYD
------GGGGRTTCCCC

Original motif Reverse complement motif
Consensus sequence: DKKWDACCCCCAHTDDV Consensus sequence: VDDAHTGGGGGTHWYYD


Motif ID: UP00088
Motif name: Plagl1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0407901

Alignment:
DBHGGGGGGTACCHHHD
----GGGGRTTCCCC--

Original motif Reverse complement motif
Consensus sequence: DBHGGGGGGTACCHHHD Consensus sequence: DHDDGGTACCCCCCHBH


Motif ID: UP00088
Motif name: Plagl1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0459696

Alignment:
BHDGGGGSSCCCCBVV
--GGGGRTTCCCC---

Original motif Reverse complement motif
Consensus sequence: BHDGGGGSSCCCCBVV Consensus sequence: VBVGGGGSSCCCCHHV


Motif ID: UP00176
Motif name: Crx
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0464973

Alignment:
DGGMTAATCCCCDWBK
-GGGGAAKCCCC----

Original motif Reverse complement motif
Consensus sequence: YBWDGGGGATTARCCD Consensus sequence: DGGMTAATCCCCDWBK


Motif ID: UP00265
Motif name: Pitx3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.048533

Alignment:
GBHDGCTAATCCCCCB
---GGGGAAKCCCC--

Original motif Reverse complement motif
Consensus sequence: VGGGGGATTAGCDDBC Consensus sequence: GBHDGCTAATCCCCCB


Motif ID: UP00216
Motif name: Obox1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0502644

Alignment:
DHDGTTAATCCCCKTDD
--GGGGAAKCCCC----

Original motif Reverse complement motif
Consensus sequence: DDARGGGGATTAACDHH Consensus sequence: DHDGTTAATCCCCKTDD


Motif ID: UP00239
Motif name: Obox2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0515498

Alignment:
HTARTTAATCCCCCKBD
--GGGGAAKCCCC----

Original motif Reverse complement motif
Consensus sequence: DBRGGGGGATTAAMTAH Consensus sequence: HTARTTAATCCCCCKBD


Motif ID: UP00160
Motif name: Obox3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0520605

Alignment:
HHWGTTAATCCCCCBBH
--GGGGAAKCCCC----

Original motif Reverse complement motif
Consensus sequence: HBVGGGGGATTAACWHH Consensus sequence: HHWGTTAATCCCCCBBH


Motif ID: UP00024
Motif name: Glis2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.052761

Alignment:
HHHVGACCCCCCVBRD
-----GGGGRTTCCCC

Original motif Reverse complement motif
Consensus sequence: HHHVGACCCCCCVBRD Consensus sequence: HKBBGGGGGGTCVHHH


Motif ID: UP00539
Motif name: Gli2_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 11
Similarity score: 0.0555704

Alignment:
CBDMCMGGGTGGTCCHVBVBAH
------GGGGAAKCCCC-----

Original motif Reverse complement motif
Consensus sequence: HTBVVVDGGACCACCCRGRDBG Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH


Dataset #: 2 Motif ID: 43 Motif name: NR1H2RXRA

Original motif Reverse complement motif
Consensus sequence: AAAGGTCAAAGGTCAAC Consensus sequence: GTTGACCTTTGACCTTT

Best Matches for Motif ID 43 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0538452

Alignment:
DVMHHDHKGACCCTCCTSVCBH
-----GTTGACCTTTGACCTTT

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH


Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0545098

Alignment:
BDHDDADAGATAAGADHBDHVD
-----AAAGGTCAAAGGTCAAC

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV


Motif ID: UP00067
Motif name: Lef1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.521114

Alignment:
VDDAGATCAAAGGKDDD-
-AAAGGTCAAAGGTCAAC

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATCTDDV Consensus sequence: VDDAGATCAAAGGKDDD


Motif ID: UP00083
Motif name: Tcf7l2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.527825

Alignment:
BDDASATCAAAGGMDDD-
-GTTGACCTTTGACCTTT

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATSTDDV Consensus sequence: BDDASATCAAAGGMDDD


Motif ID: UP00054
Motif name: Tcf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.531154

Alignment:
-BHHASATCAAAGGAHHH
AAAGGTCAAAGGTCAAC-

Original motif Reverse complement motif
Consensus sequence: BHHASATCAAAGGAHHH Consensus sequence: HHHTCCTTTGATSTHHV


Motif ID: UP00058
Motif name: Tcf3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.531876

Alignment:
-HHHASATCAAAGVRHHH
AAAGGTCAAAGGTCAAC-

Original motif Reverse complement motif
Consensus sequence: HHHASATCAAAGVRHHH Consensus sequence: HHHKVCTTTGATSTHHH


Motif ID: UP00030
Motif name: Sox11_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.544403

Alignment:
-HBDDRAACAAAGRABHH
AAAGGTCAAAGGTCAAC-

Original motif Reverse complement motif
Consensus sequence: HBDDRAACAAAGRABHH Consensus sequence: HHBTMCTTTGTTMDDVH


Motif ID: UP00062
Motif name: Sox4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.544565

Alignment:
-HHBBMCTTTGTTHDDBH
GTTGACCTTTGACCTTT-

Original motif Reverse complement motif
Consensus sequence: HBDDDAACAAAGRVBHH Consensus sequence: HHBBMCTTTGTTHDDBH


Motif ID: UP00019
Motif name: Zbtb12_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.550511

Alignment:
-BBGATCTAGAACBKHDB
GTTGACCTTTGACCTTT-

Original motif Reverse complement motif
Consensus sequence: BDHRBGTTCTAGATCVB Consensus sequence: BBGATCTAGAACBKHDB


Motif ID: UP00046
Motif name: Tcfe2a_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.552064

Alignment:
HVDDVCAGATGKYHBBV-
-AAAGGTCAAAGGTCAAC

Original motif Reverse complement motif
Consensus sequence: HVDDVCAGATGKYHBBV Consensus sequence: VBBDMYCATCTGVHHBH


Dataset #: 2 Motif ID: 44 Motif name: NR4A2

Original motif Reverse complement motif
Consensus sequence: AAGGTCAC Consensus sequence: GTGACCTT

Best Matches for Motif ID 44 (Highest to Lowest)

Motif ID: UP00048
Motif name: Rara
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0

Alignment:
DHBHAAAGGTCACVHD
-----AAGGTCAC---

Original motif Reverse complement motif
Consensus sequence: DHBHAAAGGTCACVHD Consensus sequence: HHVGTGACCTTTDVDD


Motif ID: UP00009
Motif name: Nr2f2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0074527

Alignment:
DHBHAAAGGTCAHVHB
-----AAGGTCAC---

Original motif Reverse complement motif
Consensus sequence: DHBHAAAGGTCAHVHB Consensus sequence: BHVDTGACCTTTDVDD


Motif ID: UP00079
Motif name: Esrra_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.01542

Alignment:
DHDBCAAGGTCAHVBDH
-----AAGGTCAC----

Original motif Reverse complement motif
Consensus sequence: DHDBCAAGGTCAHVBDH Consensus sequence: HHBVHTGACCTTGVDHD


Motif ID: UP00009
Motif name: Nr2f2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0395644

Alignment:
VBVBCSGGGTCAVBBH
-----AAGGTCAC---

Original motif Reverse complement motif
Consensus sequence: VBVBCSGGGTCAVBBH Consensus sequence: HVBVTGACCCSGBVBV


Motif ID: UP00082
Motif name: Zfp187_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0407874

Alignment:
DDGMCCTBGTCCHYHV
GTGACCTT--------

Original motif Reverse complement motif
Consensus sequence: DDGMCCTBGTCCHYHV Consensus sequence: VHMDGGACVAGGRCDH


Motif ID: UP00053
Motif name: Rxra_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0422933

Alignment:
DBHBDTGACCCCDHVHB
----GTGACCTT-----

Original motif Reverse complement motif
Consensus sequence: DBHBDTGACCCCDHVHB Consensus sequence: VHBHDGGGGTCAHBHBD


Motif ID: UP00079
Motif name: Esrra_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0447444

Alignment:
VKBBAGGGGTCAHDBBH
-----AAGGTCAC----

Original motif Reverse complement motif
Consensus sequence: VKBBAGGGGTCAHDBBH Consensus sequence: DBBHHTGACCCCTBBYV


Motif ID: UP00066
Motif name: Hnf4a_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0481418

Alignment:
BBHHAAAGTCCAMTHH
-----AAGGTCAC---

Original motif Reverse complement motif
Consensus sequence: BBHHAAAGTCCAMTHH Consensus sequence: HHAYTGGACTTTHDBV


Motif ID: UP00197
Motif name: Hoxc9
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.0497679

Alignment:
VDHHTTAATGACCBHV
-------GTGACCTT-

Original motif Reverse complement motif
Consensus sequence: VDVGGTCATTAAHHDB Consensus sequence: VDHHTTAATGACCBHV


Motif ID: UP00035
Motif name: Hic1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0500062

Alignment:
DBDDRTGCCCAWDHDV
----GTGACCTT----

Original motif Reverse complement motif
Consensus sequence: DBDDRTGCCCAWDHDV Consensus sequence: VHHDWTGGGCAMDHBH


Dataset #: 2 Motif ID: 45 Motif name: Pax5

Original motif Reverse complement motif
Consensus sequence: DGVBCABTGDWGCGKRRCSR Consensus sequence: MSGKKRCGCWDCABTGBBCD

Best Matches for Motif ID 45 (Highest to Lowest)

Motif ID: UP00526
Motif name: Foxn1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 20
Similarity score: 0.0499537

Alignment:
DDRMHBACGCGYGCGTDGBBDB
-DGVBCABTGDWGCGKRRCSR-

Original motif Reverse complement motif
Consensus sequence: DDRMHBACGCGYGCGTDGBBDB Consensus sequence: BDVBCDACGCKCGCGTBHRKHD


Motif ID: UP00526
Motif name: Foxn1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 20
Similarity score: 0.0520196

Alignment:
HDWHMHGACGCGCGTRBVVBHW
DGVBCABTGDWGCGKRRCSR--

Original motif Reverse complement motif
Consensus sequence: WHVBVVMACGCGCGTCDYHWDH Consensus sequence: HDWHMHGACGCGCGTRBVVBHW


Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 20
Similarity score: 0.0542764

Alignment:
HDBABCGBKRGYGGCGMSBHAK
-DGVBCABTGDWGCGKRRCSR-

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00528
Motif name: Foxm1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 20
Similarity score: 0.0560636

Alignment:
DCATDBTGHGCATKMTTBRSWR
--MSGKKRCGCWDCABTGBBCD

Original motif Reverse complement motif
Consensus sequence: MWSMBAARRATGCDCABHATGD Consensus sequence: DCATDBTGHGCATKMTTBRSWR


Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 20
Similarity score: 0.0595671

Alignment:
VYWVVHCRCCACMCACGAHSBHH
DGVBCABTGDWGCGKRRCSR---

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Motif ID: UP00528
Motif name: Foxm1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 20
Similarity score: 0.0602559

Alignment:
HADTBVADGATGCATCMTGMVHB
DGVBCABTGDWGCGKRRCSR---

Original motif Reverse complement motif
Consensus sequence: HADTBVADGATGCATCMTGMVHB Consensus sequence: VHVRCAYGATGCATCDTVVADTH


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 20
Similarity score: 0.0607506

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
DGVBCABTGDWGCGKRRCSR---

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 20
Similarity score: 0.0611227

Alignment:
BDBBVBVGTAWCCAAGVBHBAGB
MSGKKRCGCWDCABTGBBCD---

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB


Motif ID: UP00050
Motif name: Bhlhb2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 20
Similarity score: 0.0611361

Alignment:
RDHDBVDTCACGTGASBHVHDH
--MSGKKRCGCWDCABTGBBCD

Original motif Reverse complement motif
Consensus sequence: RDHDBVDTCACGTGASBHVHDH Consensus sequence: DDHBHBSTCACGTGAHBBDHHM


Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 20
Similarity score: 0.061403

Alignment:
GTVBDAATTGTVTGHGDDHKVB
DGVBCABTGDWGCGKRRCSR--

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC


Dataset #: 2 Motif ID: 46 Motif name: RORA_1

Original motif Reverse complement motif
Consensus sequence: AWVDAGGTCA Consensus sequence: TGACCTDVWT

Best Matches for Motif ID 46 (Highest to Lowest)

Motif ID: UP00009
Motif name: Nr2f2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.0154749

Alignment:
DHBHAAAGGTCAHVHB
--AWVDAGGTCA----

Original motif Reverse complement motif
Consensus sequence: DHBHAAAGGTCAHVHB Consensus sequence: BHVDTGACCTTTDVDD


Motif ID: UP00079
Motif name: Esrra_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 10
Similarity score: 0.0176661

Alignment:
HHBVHTGACCTTGVDHD
-----TGACCTDVWT--

Original motif Reverse complement motif
Consensus sequence: DHDBCAAGGTCAHVBDH Consensus sequence: HHBVHTGACCTTGVDHD


Motif ID: UP00048
Motif name: Rara
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.0189599

Alignment:
DHBHAAAGGTCACVHD
--AWVDAGGTCA----

Original motif Reverse complement motif
Consensus sequence: DHBHAAAGGTCACVHD Consensus sequence: HHVGTGACCTTTDVDD


Motif ID: UP00009
Motif name: Nr2f2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.0331999

Alignment:
VBVBCSGGGTCAVBBH
--AWVDAGGTCA----

Original motif Reverse complement motif
Consensus sequence: VBVBCSGGGTCAVBBH Consensus sequence: HVBVTGACCCSGBVBV


Motif ID: UP00066
Motif name: Hnf4a_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0341771

Alignment:
BDBVMGGGGTCAABHDV
--AWVDAGGTCA-----

Original motif Reverse complement motif
Consensus sequence: BDBVMGGGGTCAABHDV Consensus sequence: BHHVTTGACCCCYVVDB


Motif ID: UP00053
Motif name: Rxra_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 10
Similarity score: 0.0363566

Alignment:
DBHBDTGACCCCDHVHB
-----TGACCTDVWT--

Original motif Reverse complement motif
Consensus sequence: DBHBDTGACCCCDHVHB Consensus sequence: VHBHDGGGGTCAHBHBD


Motif ID: UP00079
Motif name: Esrra_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0391284

Alignment:
VKBBAGGGGTCAHDBBH
--AWVDAGGTCA-----

Original motif Reverse complement motif
Consensus sequence: VKBBAGGGGTCAHDBBH Consensus sequence: DBBHHTGACCCCTBBYV


Motif ID: UP00035
Motif name: Hic1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0444205

Alignment:
DBDDRTGCCCAWDHDV
-----TGACCTDVWT-

Original motif Reverse complement motif
Consensus sequence: DBDDRTGCCCAWDHDV Consensus sequence: VHHDWTGGGCAMDHBH


Motif ID: UP00050
Motif name: Bhlhb2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0461434

Alignment:
DDHBHBSTCACGTGAHBBDHHM
AWVDAGGTCA------------

Original motif Reverse complement motif
Consensus sequence: RDHDBVDTCACGTGASBHVHDH Consensus sequence: DDHBHBSTCACGTGAHBBDHHM


Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0489571

Alignment:
BHCBCBCCGGGTGGTCYHVHDCH
-----------TGACCTDVWT--

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB


Dataset #: 2 Motif ID: 47 Motif name: RXRRAR_DR5

Original motif Reverse complement motif
Consensus sequence: RGKTCABVVRGAGGTCA Consensus sequence: TGACCTCKVVBTGAYCK

Best Matches for Motif ID 47 (Highest to Lowest)

Motif ID: UP00540
Motif name: Gli3_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 17
Similarity score: 0.0585087

Alignment:
DVTTVVCVYGGHGGYCHHDMYB
RGKTCABVVRGAGGTCA-----

Original motif Reverse complement motif
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH


Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0709955

Alignment:
GTVBDAATTGTVTGHGDDHKVB
-----RGKTCABVVRGAGGTCA

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC


Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 17
Similarity score: 0.075055

Alignment:
DVVTTVGTGGGHGGYAMHWHHHY
RGKTCABVVRGAGGTCA------

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY


Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 17
Similarity score: 0.0758824

Alignment:
BBBDVVRGACCACCCAVGABBAB
------RGKTCABVVRGAGGTCA

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB


Motif ID: UP00032
Motif name: Gata3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 17
Similarity score: 0.0759953

Alignment:
HBHDVBWGATHBTATCRVBHHH
TGACCTCKVVBTGAYCK-----

Original motif Reverse complement motif
Consensus sequence: HBHDVBWGATHBTATCRVBHHH Consensus sequence: HHHBBMGATAVHATCWVVDHVH


Motif ID: UP00539
Motif name: Gli2_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0760211

Alignment:
DTVBDDRGACCACCCAGDWDGBH
------RGKTCABVVRGAGGTCA

Original motif Reverse complement motif
Consensus sequence: DTVBDDRGACCACCCAGDWDGBH Consensus sequence: DBCDWHCTGGGTGGTCMDHBBAH


Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 17
Similarity score: 0.0763398

Alignment:
BHCBCBCCGGGTGGTCYHVHDCH
TGACCTCKVVBTGAYCK------

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB


Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 17
Similarity score: 0.0768658

Alignment:
HDBABCGBKRGYGGCGMSBHAK
RGKTCABVVRGAGGTCA-----

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00050
Motif name: Bhlhb2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 17
Similarity score: 0.0784072

Alignment:
DDHBHBSTCACGTGAHBBDHHM
----RGKTCABVVRGAGGTCA-

Original motif Reverse complement motif
Consensus sequence: RDHDBVDTCACGTGASBHVHDH Consensus sequence: DDHBHBSTCACGTGAHBBDHHM


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 17
Similarity score: 0.0794665

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
RGKTCABVVRGAGGTCA------

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Dataset #: 2 Motif ID: 48 Motif name: Tcfcp2l1

Original motif Reverse complement motif
Consensus sequence: CCAGYYHVADCCRG Consensus sequence: CKGGDTBDMMCTGG