**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 2 Number of top significant motifs: 10 Number of best matches: 10 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Motif tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # MEME-ChIP_DM721.txt 11 1 PScanChIP_DM721.txt 37 2 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** *************************************************************** Combined Motifs for Top Best Match Motif ID 1 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 1 EWSR1-FLI1 Original Motif Original Motif RGGAAR GGAAGGAAGGAAGGAAGG GGAAGGAAGGAAGGAAGG Direction: Forward Position #: 12 Overlap #: 6 Alignment: -----------RGGAAR- GGAAGGAAGGAAGGAAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF Combined Motif Original Motif Original Motif GGAAGGAAGGAAGGAAGG BAACGTCCGC GGAAGGAAGGAAGGAASGTCCGC Direction: Forward Position #: 14 Overlap #: 5 Alignment: GGAAGGAAGGAAGGAAGG----- -------------BAACGTCCGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MZF1_5-13 Combined Motif Original Motif Reverse Complement GGAAGGAAGGAAGGAASGTCCGC BTHCCCCTYB GGAAGGAAGGAAGGAABKTCCSCTYB Direction: Forward Position #: 17 Overlap #: 7 Alignment: GGAAGGAAGGAAGGAASGTCCGC--- ----------------BTHCCCCTYB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NFKB1 Combined Motif Reverse Complement Original Motif BKAGSGGAYBTTCCTTCCTTCCTTCC GGGGRTTCCCC BKAGGGGAYBYYCCTTCCTTCCTTCC Direction: Forward Position #: 4 Overlap #: 11 Alignment: BKAGSGGAYBTTCCTTCCTTCCTTCC ---GGGGRTTCCCC------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Reverse Complement GGAAGGAAGGAAGGKMVMTCCCCTYB TGRCCTKTGHCCKAB GGAAGGAAGGAAGGKMVMTSMCCTTTGHCCKAB Direction: Forward Position #: 19 Overlap #: 8 Alignment: GGAAGGAAGGAAGGKMVMTCCCCTYB------- ------------------TGRCCTKTGHCCKAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 7 Original Motif Reverse Complement GGAAGGAAGGAAGGKMVMTSMCCTTTGHCCKAB GGGGMGGG GGGRAGGRAGGAAGGKMVMTSMCCTTTGHCCKAB Direction: Forward Position #: 2 Overlap #: 7 Alignment: -GGAAGGAAGGAAGGKMVMTSMCCTTTGHCCKAB GGGGMGGG-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif BTRGGDCAAAGGRSAYBYYCCTTCCTMCCTMCCC TTCAGCACCATGGACAGCKCC TBYAGSACMAWGGASAGBBCCCTTCCTMCCTMCCC Direction: Forward Position #: 2 Overlap #: 20 Alignment: -BTRGGDCAAAGGRSAYBYYCCTTCCTMCCTMCCC TTCAGCACCATGGACAGCKCC-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif INSM1 Original Motif Original Motif TBYAGSACMAWGGASAGBBCCCTTCCTMCCTMCCC TGYCAGGGGGCR TKYCAGGGSVMRGGASAGBBCCCTTCCTMCCTMCCC Direction: Forward Position #: 2 Overlap #: 11 Alignment: -TBYAGSACMAWGGASAGBBCCCTTCCTMCCTMCCC TGYCAGGGGGCR------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Reverse Complement Reverse Complement GGGRAGGRAGGAAGGGVBCTSTCCKRVSCCCTGMYA BGRRRGRGGRTGRTTYGGGG BGGGGRRGGRWGGWWKGGRGCTSTCCKRVSCCCTGMYA Direction: Forward Position #: 3 Overlap #: 18 Alignment: --GGGRAGGRAGGAAGGGVBCTSTCCKRVSCCCTGMYA BGRRRGRGGRTGRTTYGGGG------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Reverse Complement Reverse Complement TKYCAGGGSVMRGGASAGCMCCYWWCCWMCCKMCCCCB VRVDGGHACAVDDKGTHCTDWH TKYCDGVDGGHASRVBAKSYYCBWWCCWMCCKMCCCCB Direction: Forward Position #: 5 Overlap #: 22 Alignment: TKYCAGGGSVMRGGASAGCMCCYWWCCWMCCKMCCCCB ----VRVDGGHACAVDDKGTHCTDWH------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 2 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Motif 11 Original Motif Original Motif AMACA CAYACACACACACA CAYACACACACACA Direction: Forward Position #: 6 Overlap #: 5 Alignment: -----AMACA---- CAYACACACACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Original Motif Original Motif CAYACACACACACA CACACAVRCACACA CACACACACACACA Direction: Forward Position #: 1 Overlap #: 14 Alignment: CAYACACACACACA CACACAVRCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Reverse Complement Reverse Complement TGTGTGTGTGTGTG BGRRRGRGGRTGRTTYGGGG TGTGKGKGDGKGTGRTTYGGGG Direction: Forward Position #: 3 Overlap #: 12 Alignment: TGTGTGTGTGTGTG-------- --BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 Combined Motif Reverse Complement Reverse Complement CCCCMAAMCACYCDCRCRCACA AAAAAAACAAARRA CCCCAAAAMAMYMAMRVACACA Direction: Forward Position #: 5 Overlap #: 14 Alignment: CCCCMAAMCACYCDCRCRCACA ----AAAAAAACAAARRA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Original Motif Original Motif CCCCAAAAMAMYMAMRVACACA HWDAGHACRHHVTGTHCCHVMV CCCCAAAAVAACAHMVHRYACMHVMV Direction: Forward Position #: 5 Overlap #: 18 Alignment: CCCCAAAAMAMYMAMRVACACA---- ----HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Original Motif CCCCAAAAVAACAHMVHRYACMHVMV BTRGGDCARAGGKCA CCCCAVHRGRVCAAAGBKYACMHVMV Direction: Forward Position #: 6 Overlap #: 15 Alignment: CCCCAAAAVAACAHMVHRYACMHVMV -----BTRGGDCARAGGKCA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ArntAhr Reverse Complement Original Motif VRVDYGTKYBCTTTGBKCKHBTGGGG YGCGTG BGCGTGTKYBCTTTGBKCKHBTGGGG Direction: Forward Position #: 1 Overlap #: 6 Alignment: VRVDYGTKYBCTTTGBKCKHBTGGGG YGCGTG-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Reverse Complement CCCCAVHRGRVCAAAGBKYACACGCB MSGKKRCGCWDCABTGBBCD MCSCDDMRSDDCAVHGBDCDCACGCB Direction: Forward Position #: 1 Overlap #: 20 Alignment: CCCCAVHRGRVCAAAGBKYACACGCB MSGKKRCGCWDCABTGBBCD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Reverse Complement Original Motif BGCGTGDGHBCHBTGDDSMRDDGSGR TGAMCTTTGMMCYT TGRCSTKTGVHCHBTGDDSMRDDGSGR Direction: Forward Position #: 2 Overlap #: 13 Alignment: -BGCGTGDGHBCHBTGDDSMRDDGSGR TGAMCTTTGMMCYT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif INSM1 Reverse Complement Reverse Complement MCSCDDMRSDDCAVHGDVCAYASGKCA MGCCCCCTGMCA MGCCCCCWVRCADCAVHGDVCAYASGKCA Direction: Forward Position #: 3 Overlap #: 10 Alignment: --MCSCDDMRSDDCAVHGDVCAYASGKCA MGCCCCCTGMCA----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 3 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 EWSR1-FLI1 Original Motif Original Motif AGSCWGG GGAAGGAAGGAAGGAAGG AAGGAGGMAGGGGAAGGA Direction: Backward Position #: 5 Overlap #: 7 Alignment: -------AGSCWGG---- GGAAGGAAGGAAGGAAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- INSM1 Combined Motif Reverse Complement Reverse Complement TCCTTCCCCTRCCTCCTT MGCCCCCTGMCA TCCKYCCCCTRCCWCCTT Direction: Forward Position #: 3 Overlap #: 12 Alignment: TCCTTCCCCTRCCTCCTT --MGCCCCCTGMCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Tcfcp2l1 Reverse Complement Reverse Complement AAGGWGGMAGGGGMRGGA CKGGDTBDMMCTGG CWRGGWGVMASGGGMRGGA Direction: Forward Position #: 2 Overlap #: 13 Alignment: -AAGGWGGMAGGGGMRGGA CKGGDTBDMMCTGG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif CWRGGWGVMASGGGMRGGA TTCAGCACCATGGACAGCKCC TTCAGCACCATGGACAGSKHBVMASGGGMRGGA Direction: Forward Position #: 15 Overlap #: 7 Alignment: --------------CWRGGWGVMASGGGMRGGA TTCAGCACCATGGACAGCKCC------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif SP1 Reverse Complement Original Motif TCCKYCCCSTYVBDYSCTGTCCATGGTGCTGAA CCCCKCCCCC YCCBBCCCCYYVBDYSCTGTCCATGGTGCTGAA Direction: Forward Position #: 1 Overlap #: 10 Alignment: TCCKYCCCSTYVBDYSCTGTCCATGGTGCTGAA CCCCKCCCCC----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Original Motif Reverse Complement YCCBBCCCCYYVBDYSCTGTCCATGGTGCTGAA VAGGCCBBGGCVBB VAKSCCBCSSCBBVBDYSCTGTCCATGGTGCTGAA Direction: Forward Position #: 3 Overlap #: 12 Alignment: --YCCBBCCCCYYVBDYSCTGTCCATGGTGCTGAA VAGGCCBBGGCVBB--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Original Motif TTCAGCACCATGGACAGSKHBVBBGSSGVGGSYTV CCCRCCCC TYCMGCMCCATGGACAGSKHBVBBGSSGVGGSYTV Direction: Forward Position #: 2 Overlap #: 8 Alignment: TTCAGCACCATGGACAGSKHBVBBGSSGVGGSYTV -CCCRCCCC-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif VAKSCCBCSSCBBVBDYSCTGTCCATGGRGCRGKA VDBHMAGGTCACCCTGACCY VAKSCCBBSBCVGGBCMSCBKKMCMTGGRGCRGKA Direction: Forward Position #: 7 Overlap #: 20 Alignment: VAKSCCBCSSCBBVBDYSCTGTCCATGGRGCRGKA ------VDBHMAGGTCACCCTGACCY--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RORA_1 Combined Motif Original Motif Original Motif VAKSCCBBSBCVGGBCMSCBKKMCMTGGRGCRGKA AWVDAGGTCA VAKSCCBHHVHAGGTCASCBKKMCMTGGRGCRGKA Direction: Forward Position #: 8 Overlap #: 10 Alignment: VAKSCCBBSBCVGGBCMSCBKKMCMTGGRGCRGKA -------AWVDAGGTCA------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Reverse Complement Reverse Complement TYCMGCMCCARGRYRVGSTGACCTHVHHVGGSYTV GCCYCMCCCD KCCCSCCCCDRGRYRVGSTGACCTHVHHVGGSYTV Direction: Forward Position #: 1 Overlap #: 10 Alignment: TYCMGCMCCARGRYRVGSTGACCTHVHHVGGSYTV GCCYCMCCCD------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 4 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 NR1H2RXRA Reverse Complement Original Motif KCAGAG AAAGGTCAAAGGTCAAC AAAGGTCARAGGTCAAC Direction: Forward Position #: 6 Overlap #: 6 Alignment: -----KCAGAG------ AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Original Motif AAAGGTCARAGGTCAAC BTRGGDCARAGGKCA VDRGGKCARAGGTCAAC Direction: Forward Position #: 1 Overlap #: 15 Alignment: AAAGGTCARAGGTCAAC BTRGGDCARAGGKCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Original Motif Reverse Complement VDRGGKCARAGGTCAAC AKGYYCAAAGRTCA VVRGBKCAAAGGTCAAC Direction: Forward Position #: 2 Overlap #: 14 Alignment: VDRGGKCARAGGTCAAC -AKGYYCAAAGRTCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Original Motif Original Motif VVRGBKCAAAGGTCAAC RGGBCAAAGKYCA VVGGBYMAARGBYMAAC Direction: Forward Position #: 2 Overlap #: 13 Alignment: VVRGBKCAAAGGTCAAC -RGGBCAAAGKYCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF Combined Motif Original Motif Reverse Complement VVGGBYMAARGBYMAAC GCGGACGTTV VVGGBYMAARGGCSRACGTTV Direction: Forward Position #: 12 Overlap #: 6 Alignment: VVGGBYMAARGBYMAAC---- -----------GCGGACGTTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- INSM1 Combined Motif Original Motif Original Motif VVGGBYMAARGGCSRACGTTV TGYCAGGGGGCR VVKGBCARRGGGCRRACGTTV Direction: Forward Position #: 3 Overlap #: 12 Alignment: VVGGBYMAARGGCSRACGTTV --TGYCAGGGGGCR------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif SP1 Original Motif Reverse Complement VVKGBCARRGGGCRRACGTTV GGGGGYGGGG VRKGKYDGGGGGCRRACGTTV Direction: Forward Position #: 1 Overlap #: 10 Alignment: VVKGBCARRGGGCRRACGTTV GGGGGYGGGG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Reverse Complement Original Motif BAACGTMMGCCCCCHKYCYMV TTCAGCACCATGGACAGCKCC BAACKTCAGCMCCMHGGMCAGCKCC Direction: Forward Position #: 5 Overlap #: 17 Alignment: BAACGTMMGCCCCCHKYCYMV---- ----TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Original Motif Reverse Complement BAACKTCAGCMCCMHGGMCAGCKCC TCCCAG CKCCKCCCAGBAACKTCAGCMCCMH Direction: Backward Position #: 5 Overlap #: 6 Alignment: BAACKTCAGCMCCMHGGMCAGCKCC ---------------TCCCAG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 5 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 RREB1 Reverse Complement Reverse Complement RARAT BGRRRGRGGRTGRTTYGGGG GRTTYGGGGRRGATBGRRRG Direction: Backward Position #: 10 Overlap #: 5 Alignment: ------RARAT--------- BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 Combined Motif Reverse Complement Reverse Complement CMMMCBATCKMCCCCMAAMC AAAAAAACAAARRA CMMMCBATCKMCCCCAAAAMAACAAARRA Direction: Forward Position #: 16 Overlap #: 5 Alignment: CMMMCBATCKMCCCCMAAMC--------- ---------------AAAAAAACAAARRA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR4A2 Combined Motif Original Motif Original Motif CMMMCBATCKMCCCCAAAAMAACAAARRA AAGGTCAC CMMMCDAKVTCMCCCAAAAMAACAAARRA Direction: Forward Position #: 6 Overlap #: 8 Alignment: CMMMCBATCKMCCCCAAAAMAACAAARRA -----AAGGTCAC---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Original Motif Reverse Complement CMMMCDAKVTCMCCCAAAAMAACAAARRA AKGYYCAAAGRTCA AKSHHCMAAGRTCACCCAAAAMAACAAARRA Direction: Forward Position #: 3 Overlap #: 12 Alignment: --CMMMCDAKVTCMCCCAAAAMAACAAARRA AKGYYCAAAGRTCA----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Original Motif Original Motif AKSHHCMAAGRTCACCCAAAAMAACAAARRA AAAGGTCAAAGGTCAAC AARGBTCAAAGGTCAMCCAAAAMAACAAARRA Direction: Forward Position #: 2 Overlap #: 16 Alignment: -AKSHHCMAAGRTCACCCAAAAMAACAAARRA AAAGGTCAAAGGTCAAC--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF Combined Motif Original Motif Reverse Complement AARGBTCAAAGGTCAMCCAAAAMAACAAARRA GCGGACGTTV AARGBKCRRASGTYAMCCAAAAMAACAAARRA Direction: Forward Position #: 6 Overlap #: 10 Alignment: AARGBTCAAAGGTCAMCCAAAAMAACAAARRA -----GCGGACGTTV----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Original Motif AARGBKCRRASGTYAMCCAAAAMAACAAARRA BTRGGDCARAGGKCA VDRGGBCARAGGTCAMCCAAAAMAACAAARRA Direction: Forward Position #: 1 Overlap #: 15 Alignment: AARGBKCRRASGTYAMCCAAAAMAACAAARRA BTRGGDCARAGGKCA----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Reverse Complement TKKTTTGTTRTTTTGGYTGACCTKTGBCCKDB GGYGCTGTCCATGGTGCTGAA AKBYGSTKKMCMTGKKBCYGHTKKTTTGTTRTT Direction: Backward Position #: 2 Overlap #: 20 Alignment: TKKTTTGTTRTTTTGGYTGACCTKTGBCCKDB- ------------GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 6 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 REST Reverse Complement Reverse Complement GCKGCYG GGYGCTGTCCATGGTGCTGAA GGYGCTGTCCATGSTGCTGAA Direction: Forward Position #: 13 Overlap #: 7 Alignment: ------------GCKGCYG-- GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF Combined Motif Original Motif Original Motif GGYGCTGTCCATGSTGCTGAA BAACGTCCGC GGHDMYGTCCRYGSTGCTGAA Direction: Forward Position #: 3 Overlap #: 10 Alignment: GGYGCTGTCCATGSTGCTGAA --BAACGTCCGC--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Original Motif Original Motif GGHDMYGTCCRYGSTGCTGAA BBVGCCBVGGCCTV BBGGBHVHGKCCTBGSTGCTGAA Direction: Forward Position #: 3 Overlap #: 12 Alignment: --GGHDMYGTCCRYGSTGCTGAA BBVGCCBVGGCCTV--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFAP2A Original Motif Reverse Complement BBGGBHVHGKCCTBGSTGCTGAA SCMVBBGGC SCVVBBGGSKCCTBGSTGCTGAA Direction: Forward Position #: 1 Overlap #: 9 Alignment: BBGGBHVHGKCCTBGSTGCTGAA SCMVBBGGC-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Original Motif TTCAGCASCBAGGYSCCBBVVGS CCCRCCCC TYCMGCMCCBAGGYSCCBBVVGS Direction: Forward Position #: 2 Overlap #: 8 Alignment: TTCAGCASCBAGGYSCCBBVVGS -CCCRCCCC-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Reverse Complement SCVVBBGGSKCCTBGGRGCRGKA MSGKKRCGCWDCABTGBBCD VSGBBVSGCKCCDBKGVGCRGKA Direction: Forward Position #: 1 Overlap #: 20 Alignment: SCVVBBGGSKCCTBGGRGCRGKA MSGKKRCGCWDCABTGBBCD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Egr1 Combined Motif Original Motif Original Motif VSGBBVSGCKCCDBKGVGCRGKA HGCGTGGGCGK KAYSCGKGGGCGGVSGBBVSGCK Direction: Backward Position #: 3 Overlap #: 11 Alignment: VSGBBVSGCKCCDBKGVGCRGKA ----------HGCGTGGGCGK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Original Motif Original Motif KAYSCGKGGGCGGVSGBBVSGCK DGGGYGKGGC KGGGYGKGGSCGGVSGBBVSGCK Direction: Forward Position #: 1 Overlap #: 10 Alignment: KAYSCGKGGGCGGVSGBBVSGCK DGGGYGKGGC------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 Combined Motif Original Motif Reverse Complement KGGGYGKGGSCGGVSGBBVSGCK GGGGGYGGGG KGGGBGKGGBVGGGSGBBVSGCK Direction: Forward Position #: 5 Overlap #: 10 Alignment: KGGGYGKGGSCGGVSGBBVSGCK ----GGGGGYGGGG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Original Motif Reverse Complement KGGGBGKGGBVGGGSGBBVSGCK BGRRRGRGGRTGRTTYGGGG BGGGDGGGGVTGGBYBGGGGGCK Direction: Forward Position #: 1 Overlap #: 20 Alignment: KGGGBGKGGBVGGGSGBBVSGCK BGRRRGRGGRTGRTTYGGGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 7 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 SP1 Original Motif Original Motif CCCRCCCC CCCCKCCCCC CCCCDCCCCC Direction: Backward Position #: 2 Overlap #: 8 Alignment: -CCCRCCCC- CCCCKCCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Original Motif Reverse Complement CCCCDCCCCC GCCYCMCCCD SCCCCCCCCH Direction: Forward Position #: 1 Overlap #: 10 Alignment: CCCCDCCCCC GCCYCMCCCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Reverse Complement Original Motif DGGGGGGGGS HGCGTGGGCGK DGSGKGGGSGK Direction: Forward Position #: 1 Overlap #: 10 Alignment: DGGGGGGGGS- HGCGTGGGCGK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Original Motif Reverse Complement DGSGKGGGSGK BGRRRGRGGRTGRTTYGGGG DGSGDGGGGGGTGRTTYGGGG Direction: Forward Position #: 2 Overlap #: 10 Alignment: DGSGKGGGSGK---------- -BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NFKB1 Combined Motif Original Motif Original Motif DGSGDGGGGGGTGRTTYGGGG GGGGRTTCCCC DGSGDGGGGGGTGRTTKGGGRTTCCCC Direction: Forward Position #: 17 Overlap #: 5 Alignment: DGSGDGGGGGGTGRTTYGGGG------ ----------------GGGGRTTCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif INSM1 Original Motif Original Motif DGSGDGGGGGGTGRTTKGGGRTTCCCC TGYCAGGGGGCR TGBVWGGGGGBTGRTTKGGGRTTCCCC Direction: Forward Position #: 1 Overlap #: 12 Alignment: DGSGDGGGGGGTGRTTKGGGRTTCCCC TGYCAGGGGGCR--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- EWSR1-FLI1 Combined Motif Reverse Complement Reverse Complement GGGGAAMCCCYAAMCABCCCCCWVBCA CCTTCCTTCCTTCCTTCC GGGGAAMCCCYAAMCABCCCCCTTCCWTCCTTCCTTCC Direction: Forward Position #: 21 Overlap #: 7 Alignment: GGGGAAMCCCYAAMCABCCCCCWVBCA----------- --------------------CCTTCCTTCCTTCCTTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Original Motif Reverse Complement GGGGAAMCCCYAAMCABCCCCCTTCCWTCCTTCCTTCC CCCCCTTGGGCCCC GGGGAAMCCCCMMYYRGSCCCCTTCCWTCCTTCCTTCC Direction: Forward Position #: 9 Overlap #: 14 Alignment: GGGGAAMCCCYAAMCABCCCCCTTCCWTCCTTCCTTCC --------CCCCCTTGGGCCCC---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Reverse Complement GGGGAAMCCCCMMYYRGSCCCCTTCCWTCCTTCCTTCC VAGGCCBBGGCVBB GGGBARSCCCCVVCHVBSCCCCTTCCWTCCTTCCTTCC Direction: Forward Position #: 4 Overlap #: 14 Alignment: GGGGAAMCCCCMMYYRGSCCCCTTCCWTCCTTCCTTCC ---VAGGCCBBGGCVBB--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif GGAAGGAAGGAWGGAAGGGGSBVDGVVGGGGSMTBCCC DGVBCABTGDWGCGKRRCSR GGAAGGAAGGADSVVDGRGGSGBRRCSGGGGSMTBCCC Direction: Forward Position #: 9 Overlap #: 20 Alignment: GGAAGGAAGGAWGGAAGGGGSBVDGVVGGGGSMTBCCC --------DGVBCABTGDWGCGKRRCSR---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 8 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 REST Reverse Complement Reverse Complement TCCCAG GGYGCTGTCCATGGTGCTGAA GTGCTGAATCCCHGGGYGCTG Direction: Backward Position #: 9 Overlap #: 6 Alignment: -------TCCCAG-------- GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MZF1_1-4 Combined Motif Reverse Complement Reverse Complement CAGCKCCCHGGGATTCAGCAC TCCCCV CAGYCCCCHGGGATTCAGCAC Direction: Forward Position #: 4 Overlap #: 6 Alignment: CAGCKCCCHGGGATTCAGCAC ---TCCCCV------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Original Motif Original Motif CAGYCCCCHGGGATTCAGCAC CCCCMAAMCAMCCMCMMMCV CHGGGATTCAGCACCMVHCCCCAGYCCCCHGGGAT Direction: Backward Position #: 15 Overlap #: 7 Alignment: -------------CAGYCCCCHGGGATTCAGCAC --------------CCCCMAAMCAMCCMCMMMCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif INSM1 Reverse Complement Reverse Complement ATCCCHGGGGMCTGGGGDVYGGTGCTGAATCCCHG MGCCCCCTGMCA MRYCCCCKGRCACTGGGGDVYGGTGCTGAATCCCHG Direction: Forward Position #: 2 Overlap #: 11 Alignment: -ATCCCHGGGGMCTGGGGDVYGGTGCTGAATCCCHG MGCCCCCTGMCA------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfp423 Original Motif Reverse Complement MRYCCCCKGRCACTGGGGDVYGGTGCTGAATCCCHG GYRYCCMTKGGYRSC GHRYCCCYKGGYRCYGGGGDVYGGTGCTGAATCCCHG Direction: Forward Position #: 2 Overlap #: 14 Alignment: -MRYCCCCKGRCACTGGGGDVYGGTGCTGAATCCCHG GYRYCCMTKGGYRSC---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA Combined Motif Original Motif Original Motif GHRYCCCYKGGYRCYGGGGDVYGGTGCTGAATCCCHG AAAGGTCAAAGGTCAAC GHRYCCCYKGGYRCYGGGGDVYGGTGCTGAATCMMAGGTCAAAGGTCAAC Direction: Forward Position #: 34 Overlap #: 4 Alignment: GHRYCCCYKGGYRCYGGGGDVYGGTGCTGAATCCCHG------------- ---------------------------------AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 Combined Motif Original Motif Reverse Complement GHRYCCCYKGGYRCYGGGGDVYGGTGCTGAATCMMAGGTCAAAGGTCAAC CKGGDTBDMMCTGG GHRYCCCCKGGBDBBVVSKGGYGGTGCTGAATCMMAGGTCAAAGGTCAAC Direction: Forward Position #: 8 Overlap #: 14 Alignment: GHRYCCCYKGGYRCYGGGGDVYGGTGCTGAATCMMAGGTCAAAGGTCAAC -------CKGGDTBDMMCTGG----------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Egr1 Combined Motif Original Motif Reverse Complement GHRYCCCCKGGBDBBVVSKGGYGGTGCTGAATCMMAGGTCAAAGGTCAAC YCGCCCACGCH GYCBCCCMCGSHDBBVVSKGGYGGTGCTGAATCMMAGGTCAAAGGTCAAC Direction: Forward Position #: 2 Overlap #: 11 Alignment: GHRYCCCCKGGBDBBVVSKGGYGGTGCTGAATCMMAGGTCAAAGGTCAAC -YCGCCCACGCH-------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Original Motif Original Motif GYCBCCCMCGSHDBBVVSKGGYGGTGCTGAATCMMAGGTCAAAGGTCAAC HWDAGHACRHHVTGTHCCHVMV GYCBCCCMCGVHDVGVACRBVBBGTVCYGVMTCMMAGGTCAAAGGTCAAC Direction: Forward Position #: 11 Overlap #: 22 Alignment: GYCBCCCMCGSHDBBVVSKGGYGGTGCTGAATCMMAGGTCAAAGGTCAAC ----------HWDAGHACRHHVTGTHCCHVMV------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Reverse Complement GTTGACCTTTGACCTYRGAYBCMGVACBBVBKGTBCBDHVCGYGGGVGKC VAGGCCBBGGCVBB GTTGACCTTWGRCCBBGGMBBBMGVACBBVBKGTBCBDHVCGYGGGVGKC Direction: Forward Position #: 9 Overlap #: 14 Alignment: GTTGACCTTTGACCTYRGAYBCMGVACBBVBKGTBCBDHVCGYGGGVGKC --------VAGGCCBBGGCVBB---------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 9 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Motif 11 Original Motif Original Motif CACACAVRCACACA CAYACACACACACA CACACACACACACA Direction: Forward Position #: 1 Overlap #: 14 Alignment: CACACAVRCACACA CAYACACACACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Reverse Complement Reverse Complement TGTGTGTGTGTGTG BGRRRGRGGRTGRTTYGGGG TGTGKGKGDGKGTGRTTYGGGG Direction: Forward Position #: 3 Overlap #: 12 Alignment: TGTGTGTGTGTGTG-------- --BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 Combined Motif Reverse Complement Reverse Complement CCCCMAAMCACYCDCRCRCACA AAAAAAACAAARRA CCCCAAAAMAMYMAMRVACACA Direction: Forward Position #: 5 Overlap #: 14 Alignment: CCCCMAAMCACYCDCRCRCACA ----AAAAAAACAAARRA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRAVDR Combined Motif Reverse Complement Original Motif TGTGTVKYTYKRTRTTTTGGGG GGGTCAWBGRGTTCA TGTGTVKYTYKRTRTTTTGGGKCAWBGRGTTCA Direction: Forward Position #: 19 Overlap #: 4 Alignment: TGTGTVKYTYKRTRTTTTGGGG----------- ------------------GGGTCAWBGRGTTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Ar Reverse Complement Original Motif TGAACKCBWTGRCCCAAAAMAMYMAMRVACACA HWDAGHACRHHVTGTHCCHVMV HWDDGAACDCBHTGWCCCVVAMMAMYMAMRVACACA Direction: Forward Position #: 4 Overlap #: 19 Alignment: ---TGAACKCBWTGRCCCAAAAMAMYMAMRVACACA HWDAGHACRHHVTGTHCCHVMV-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Original Motif Reverse Complement HWDDGAACDCBHTGWCCCVVAMMAMYMAMRVACACA YCGCCCACGCH YCRCMCACRCAHWDDGAACDCBHTGWCCCVVAMMAM Direction: Backward Position #: 1 Overlap #: 11 Alignment: HWDDGAACDCBHTGWCCCVVAMMAMYMAMRVACACA -------------------------YCGCCCACGCH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 10 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 EWSR1-FLI1 Reverse Complement Original Motif AAAAAAACAAARRA GGAAGGAAGGAAGGAAGG GGAARRAARSAARGAAGG Direction: Forward Position #: 3 Overlap #: 14 Alignment: --AAAAAAACAAARRA-- GGAAGGAAGGAAGGAAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 11 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 11 Motif 9 Original Motif Original Motif CAYACACACACACA CACACAVRCACACA CACACACACACACA Direction: Forward Position #: 1 Overlap #: 14 Alignment: CAYACACACACACA CACACAVRCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Reverse Complement Reverse Complement TGTGTGTGTGTGTG BGRRRGRGGRTGRTTYGGGG TGTGKGKGDGKGTGRTTYGGGG Direction: Forward Position #: 3 Overlap #: 12 Alignment: TGTGTGTGTGTGTG-------- --BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 Combined Motif Reverse Complement Reverse Complement CCCCMAAMCACYCDCRCRCACA AAAAAAACAAARRA CCCCAAAAMAMYMAMRVACACA Direction: Forward Position #: 5 Overlap #: 14 Alignment: CCCCMAAMCACYCDCRCRCACA ----AAAAAAACAAARRA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif INSM1 Original Motif Reverse Complement CCCCAAAAMAMYMAMRVACACA MGCCCCCTGMCA MGCCCCMWRMCAMYMAMRVACACA Direction: Forward Position #: 3 Overlap #: 10 Alignment: --CCCCAAAAMAMYMAMRVACACA MGCCCCCTGMCA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Original Motif Reverse Complement MGCCCCMWRMCAMYMAMRVACACA YCGCCCACGCH YSBCCCMCGMMAMYMAMRVACACA Direction: Forward Position #: 1 Overlap #: 11 Alignment: MGCCCCMWRMCAMYMAMRVACACA YCGCCCACGCH------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Reverse Complement YSBCCCMCGMMAMYMAMRVACACA MGGTCAGGGTGACCTRDBHV MGGYCMVVGHVACCHRVDVDCACA Direction: Forward Position #: 1 Overlap #: 20 Alignment: YSBCCCMCGMMAMYMAMRVACACA MGGTCAGGGTGACCTRDBHV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Reverse Complement Original Motif TGTGDVHBKHGGTVHCVBYGKCCR DGGGYGKGGC TGKGYGBGGHGGTVHCVBYGKCCR Direction: Forward Position #: 1 Overlap #: 10 Alignment: TGTGDVHBKHGGTVHCVBYGKCCR DGGGYGKGGC-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif SP1 Original Motif Reverse Complement TGKGYGBGGHGGTVHCVBYGKCCR GGGGGYGGGG KGGGKBGGGBGGTVHCVBYGKCCR Direction: Forward Position #: 1 Overlap #: 10 Alignment: TGKGYGBGGHGGTVHCVBYGKCCR GGGGGYGGGG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 7 Original Motif Reverse Complement KGGGKBGGGBGGTVHCVBYGKCCR GGGGMGGG GGGGVGGGGBGGTVHCVBYGKCCR Direction: Forward Position #: 1 Overlap #: 8 Alignment: KGGGKBGGGBGGTVHCVBYGKCCR GGGGMGGG---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HIF1AARNT Combined Motif Reverse Complement Reverse Complement MGGYCMVVGHVACCBCCCCVCCCC VCACGTBV MGGBCACGKBVACCBCCCCVCCCC Direction: Forward Position #: 4 Overlap #: 8 Alignment: MGGYCMVVGHVACCBCCCCVCCCC ---VCACGTBV------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 12 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Pax5 Original Motif Original Motif BBVGCCBVGGCCTV DGVBCABTGDWGCGKRRCSR RCSRVBVDSYGVGGCSTRDG Direction: Backward Position #: 5 Overlap #: 14 Alignment: --BBVGCCBVGGCCTV---- DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Reverse Complement Original Motif CDMASGCCBCKSDVBVMSGK VHRGGTCABDBTGMCCTB CDVRGKCABBKBGVCCYVGK Direction: Forward Position #: 1 Overlap #: 18 Alignment: CDMASGCCBCKSDVBVMSGK VHRGGTCABDBTGMCCTB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Original Motif YCVMGGBCVYBVTGYCMBDG VDBHMAGGTCACCCTGACCY VDBCVAGGBCABBVTGHCCYDG Direction: Forward Position #: 3 Overlap #: 18 Alignment: --YCVMGGBCVYBVTGYCMBDG VDBHMAGGTCACCCTGACCY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 Combined Motif Original Motif Original Motif VDBCVAGGBCABBVTGHCCYDG CCAGYYHVADCCRG VDCCVGBBBVAVCCWGHCCYDG Direction: Forward Position #: 3 Overlap #: 14 Alignment: VDBCVAGGBCABBVTGHCCYDG --CCAGYYHVADCCRG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfp423 Reverse Complement Original Motif CDMGGHCWGGVTVVBBCBGGHV GSMMCCYARGGKKKC VVMVSCCAGGGKKBCBCBGGHV Direction: Forward Position #: 1 Overlap #: 15 Alignment: CDMGGHCWGGVTVVBBCBGGHV GSMMCCYARGGKKKC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Original Motif Original Motif VVMVSCCAGGGKKBCBCBGGHV GGGGCCCAAGGGGG GGGGCCCARGGGGGCBCBGGHV Direction: Forward Position #: 1 Overlap #: 14 Alignment: VVMVSCCAGGGKKBCBCBGGHV GGGGCCCAAGGGGG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Reverse Complement GGGGCCCARGGGGGCBCBGGHV GGYGCTGTCCATGGTGCTGAA GGVGCYSWCSRKGGTBCTGRVV Direction: Forward Position #: 1 Overlap #: 21 Alignment: GGGGCCCARGGGGGCBCBGGHV GGYGCTGTCCATGGTGCTGAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Original Motif Reverse Complement GGVGCYSWCSRKGGTBCTGRVV VRVDGGHACAVDDKGTHCTDWH GRVDSKBWCVVKGKKTYYKDDH Direction: Forward Position #: 1 Overlap #: 22 Alignment: GGVGCYSWCSRKGGTBCTGRVV VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Original Motif GRVDSKBWCVVKGKKTYYKDDH BTRGGDCARAGGKCA VDVGGBBAMAGGKBDTYYKDDH Direction: Forward Position #: 1 Overlap #: 15 Alignment: GRVDSKBWCVVKGKKTYYKDDH BTRGGDCARAGGKCA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRRAR_DR5 Original Motif Original Motif VDVGGBBAMAGGKBDTYYKDDH RGKTCABVVRGAGGTCA RGGTVRBVVAVAGGKCATYYKDDH Direction: Forward Position #: 3 Overlap #: 15 Alignment: --VDVGGBBAMAGGKBDTYYKDDH RGKTCABVVRGAGGTCA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 13 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfp423 Ar Original Motif Original Motif GSMMCCYARGGKKKC HWDAGHACRHHVTGTHCCHVMV HVMVRGMACMYHRKGTDCCHWD Direction: Backward Position #: 5 Overlap #: 15 Alignment: ---GSMMCCYARGGKKKC---- HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Reverse Complement Original Motif DWHGGDACYMHKRGTYCMVRVD DGVBCABTGDWGCGKRRCSR DRHGSDVCBVWGVGTHVCSRVD Direction: Forward Position #: 1 Overlap #: 20 Alignment: DWHGGDACYMHKRGTYCMVRVD DGVBCABTGDWGCGKRRCSR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Reverse Complement Reverse Complement HVMSGVHACVCWBBGBDSCHMD GGYGCTGTCCATGGTGCTGAA HGVHGCTRYCCHBGGTBCYGMD Direction: Forward Position #: 2 Overlap #: 21 Alignment: HVMSGVHACVCWBBGBDSCHMD -GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRAVDR Combined Motif Original Motif Reverse Complement HGVHGCTRYCCHBGGTBCYGMD TGAACKCBWTGACCC HGVHGCTRYCCHBGGTBCTGAACKCBWTGACCC Direction: Forward Position #: 19 Overlap #: 4 Alignment: HGVHGCTRYCCHBGGTBCYGMD----------- ------------------TGAACKCBWTGACCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Reverse Complement Original Motif GGGTCAWBGYGTTCAGBACCVHGGKMAGCDVCD GGGGCCCAAGGGGG GGGGYCAWVGBGKKCAGBACCVHGGKMAGCDVCD Direction: Forward Position #: 2 Overlap #: 13 Alignment: -GGGTCAWBGYGTTCAGBACCVHGGKMAGCDVCD GGGGCCCAAGGGGG-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Reverse Complement HGVHGCTRYCCHBGGTBCTGYYCBCBWTGMCCCC VAGGCCBBGGCVBB HGVHGCWGGCCHBGGYBSBGYYCBCBWTGMCCCC Direction: Forward Position #: 6 Overlap #: 14 Alignment: HGVHGCTRYCCHBGGTBCTGYYCBCBWTGMCCCC -----VAGGCCBBGGCVBB--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Original Motif GGGGYCAWVGBGKKCVSBMCCVHGGCCWGCDVCD VDBHMAGGTCACCCTGACCY VDBHGRGGTCAHHSTGDBCHSBMCCVHGGCCWGCDVCD Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----GGGGYCAWVGBGKKCVSBMCCVHGGCCWGCDVCD VDBHMAGGTCACCCTGACCY------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Original Motif Reverse Complement VDBHGRGGTCAHHSTGDBCHSBMCCVHGGCCWGCDVCD BGRRRGRGGRTGRTTYGGGG BVDVVGRGGDYRDYBTGRGVHSBMCCVHGGCCWGCDVCD Direction: Forward Position #: 2 Overlap #: 19 Alignment: -VDBHGRGGTCAHHSTGDBCHSBMCCVHGGCCWGCDVCD BGRRRGRGGRTGRTTYGGGG------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif INSM1 Original Motif Original Motif BVDVVGRGGDYRDYBTGRGVHSBMCCVHGGCCWGCDVCD TGYCAGGGGGCR TGBVDGGGGKYRDYBTGRGVHSBMCCVHGGCCWGCDVCD Direction: Forward Position #: 1 Overlap #: 12 Alignment: BVDVVGRGGDYRDYBTGRGVHSBMCCVHGGCCWGCDVCD TGYCAGGGGGCR--------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Tcfcp2l1 Reverse Complement Reverse Complement HGVHGCWGGCCHBGGYBSDVCMCAVMDMKYCCCCDVVCA CKGGDTBDMMCTGG CKGGDBDGVCCDKGGYBSDVCMCAVMDMKYCCCCDVVCA Direction: Forward Position #: 1 Overlap #: 14 Alignment: HGVHGCWGGCCHBGGYBSDVCMCAVMDMKYCCCCDVVCA CKGGDTBDMMCTGG------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 14 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ZEB1 RORA_1 Original Motif Reverse Complement CACCTD TGACCTDVWT VWTSACCTDT Direction: Backward Position #: 4 Overlap #: 6 Alignment: -CACCTD--- TGACCTDVWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif VWTSACCTDT TTCAGCACCATGGACAGCKCC TTSAKSACCWDKGACAGCKCC Direction: Forward Position #: 3 Overlap #: 10 Alignment: --VWTSACCTDT--------- TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Esrrb Combined Motif Original Motif Reverse Complement TTSAKSACCWDKGACAGCKCC CACGTG TTSAKCACSTDKGACAGCKCC Direction: Forward Position #: 6 Overlap #: 6 Alignment: TTSAKSACCWDKGACAGCKCC -----CACGTG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Arnt Combined Motif Original Motif Reverse Complement TTSAKCACSTDKGACAGCKCC CACGTG TTSAKCACGTGKGACAGCKCC Direction: Forward Position #: 6 Overlap #: 6 Alignment: TTSAKCACSTDKGACAGCKCC -----CACGTG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA Combined Motif Original Motif Reverse Complement TTSAKCACGTGKGACAGCKCC GTTGACCTTTGACCTTT TTSWTSACSTKTGACMKBDCC Direction: Forward Position #: 3 Overlap #: 17 Alignment: TTSAKCACGTGKGACAGCKCC --GTTGACCTTTGACCTTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HIF1AARNT Combined Motif Original Motif Reverse Complement TTSWTSACSTKTGACMKBDCC VCACGTBV TTSWKCACGTBBGACMKBDCC Direction: Forward Position #: 5 Overlap #: 8 Alignment: TTSWTSACSTKTGACMKBDCC ----VCACGTBV--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- INSM1 Combined Motif Reverse Complement Original Motif GGDVYRGTCVVACGTGRWSAA TGYCAGGGGGCR AATSBVASGKGGHVGGDVYRG Direction: Backward Position #: 3 Overlap #: 12 Alignment: GGDVYRGTCVVACGTGRWSAA -------TGYCAGGGGGCR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 15 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFAP2A Zfx Reverse Complement Original Motif SCMVBBGGC BBVGCCBVGGCCTV TVSCCBVGGSCBBV Direction: Backward Position #: 3 Overlap #: 9 Alignment: ---SCMVBBGGC-- BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Reverse Complement Original Motif VBBGSCCVBGGSVA GGGGCCCAAGGGGG GGGGSCCDVGGGGR Direction: Forward Position #: 1 Overlap #: 14 Alignment: VBBGSCCVBGGSVA GGGGCCCAAGGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfp423 Original Motif Original Motif GGGGSCCDVGGGGR GSMMCCYARGGKKKC GSVVCCYAVGGGKDC Direction: Forward Position #: 1 Overlap #: 14 Alignment: GGGGSCCDVGGGGR- GSMMCCYARGGKKKC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif GHYCCCBTKGGVVSC VDBHMAGGTCACCCTGACCY GHBBCCBWGGKCASCCTGACCY Direction: Forward Position #: 3 Overlap #: 13 Alignment: GHYCCCBTKGGVVSC------- --VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Original Motif Reverse Complement GHBBCCBWGGKCASCCTGACCY BAGGYCABHBTGACCKHV VMGBYCHHBGTSACCBTGACCY Direction: Forward Position #: 1 Overlap #: 18 Alignment: GHBBCCBWGGKCASCCTGACCY BAGGYCABHBTGACCKHV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mycn Combined Motif Original Motif Original Motif VMGBYCHHBGTSACCBTGACCY HSCACGTGGC VMSCACRTGGBSACCBTGACCY Direction: Forward Position #: 2 Overlap #: 10 Alignment: VMGBYCHHBGTSACCBTGACCY -HSCACGTGGC----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Reverse Complement MGGTCAVGGTSVCCAMGTGSYV MSGKKRCGCWDCABTGBBCD MGGTBAMGSTBCMBHVBBSBYV Direction: Forward Position #: 1 Overlap #: 20 Alignment: MGGTCAVGGTSVCCAMGTGSYV MSGKKRCGCWDCABTGBBCD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRRAR_DR5 Combined Motif Original Motif Reverse Complement MGGTBAMGSTBCMBHVBBSBYV TGACCTCKVVBTGAYCK MGGTTRMBCTVBVVHTGACCKV Direction: Forward Position #: 5 Overlap #: 17 Alignment: MGGTBAMGSTBCMBHVBBSBYV ----TGACCTCKVVBTGAYCK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Combined Motif Reverse Complement Original Motif VRGGTCAHVVVVAGBYMAACCY VGCACGTGGH VVGCACRTGGHVAGBYMAACCY Direction: Forward Position #: 2 Overlap #: 10 Alignment: VRGGTCAHVVVVAGBYMAACCY -VGCACGTGGH----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Tcfcp2l1 Original Motif Original Motif VVGCACRTGGHVAGBYMAACCY CCAGYYHVADCCRG CCRGWYVHRDCCAGBYMAACCY Direction: Forward Position #: 1 Overlap #: 14 Alignment: VVGCACRTGGHVAGBYMAACCY CCAGYYHVADCCRG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 16 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 RREB1 Reverse Complement Reverse Complement GGGGGYGGGG BGRRRGRGGRTGRTTYGGGG BGGGGGVGGGKGRTTYGGGG Direction: Forward Position #: 2 Overlap #: 10 Alignment: -GGGGGYGGGG--------- BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif BGGGGGVGGGKGRTTYGGGG BBVGCCBVGGCCTV BGGBGGSSGRGGSYTBGGGG Direction: Forward Position #: 3 Overlap #: 14 Alignment: BGGGGGVGGGKGRTTYGGGG --BBVGCCBVGGCCTV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Reverse Complement Reverse Complement CCCCVAKSCCMCSSCCBCCB CCCCCTTGGGCCCC CCCCCWKGSSCCCCCCBCCB Direction: Forward Position #: 1 Overlap #: 14 Alignment: CCCCVAKSCCMCSSCCBCCB CCCCCTTGGGCCCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Reverse Complement CCCCCWKGSSCCCCCCBCCB TGRCCTKTGHCCKAB YSMCCTKKSBCCBVCCBCCB Direction: Forward Position #: 1 Overlap #: 15 Alignment: CCCCCWKGSSCCCCCCBCCB TGRCCTKTGHCCKAB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Reverse Complement Original Motif BGGBGGVBGGBSRRAGGRSK DGGGYGKGGC DGGGBGDGGSBSRRAGGRSK Direction: Forward Position #: 1 Overlap #: 10 Alignment: BGGBGGVBGGBSRRAGGRSK DGGGYGKGGC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Original Motif Original Motif DGGGBGDGGSBSRRAGGRSK HGCGTGGGCGK HGSGTGGGSGKSRRAGGRSK Direction: Forward Position #: 1 Overlap #: 11 Alignment: DGGGBGDGGSBSRRAGGRSK HGCGTGGGCGK--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Reverse Complement HGSGTGGGSGKSRRAGGRSK MSGKKRCGCWDCABTGBBCD HGGGKRVGCDKCAVWGGVSD Direction: Forward Position #: 1 Overlap #: 20 Alignment: HGSGTGGGSGKSRRAGGRSK MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MZF1_5-13 Reverse Complement Reverse Complement HSVCCWVTGRHGCVMRCCCD BTHCCCCTYB HDHCCCCTBVHGCVMRCCCD Direction: Forward Position #: 1 Overlap #: 10 Alignment: HSVCCWVTGRHGCVMRCCCD BTHCCCCTYB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif INSM1 Original Motif Reverse Complement HDHCCCCTBVHGCVMRCCCD MGCCCCCTGMCA HKCCCCCTBVCRCVMRCCCD Direction: Forward Position #: 1 Overlap #: 12 Alignment: HDHCCCCTBVHGCVMRCCCD MGCCCCCTGMCA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- EWSR1-FLI1 Combined Motif Original Motif Reverse Complement HKCCCCCTBVCRCVMRCCCD CCTTCCTTCCTTCCTTCC CCTBVCRCVMRCCCDCTTCCHKCCCCCTBVCRCVM Direction: Backward Position #: 16 Overlap #: 5 Alignment: -------------HKCCCCCTBVCRCVMRCCCD ---------------CCTTCCTTCCTTCCTTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 17 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRAVDR Ar Reverse Complement Original Motif TGAACKCBWTGACCC HWDAGHACRHHVTGTHCCHVMV HVMVDGAACDCBHTGWCCCHWD Direction: Backward Position #: 5 Overlap #: 15 Alignment: ---TGAACKCBWTGACCC---- HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement HVMVDGAACDCBHTGWCCCHWD BAGGYCABHBTGACCKHV HVMVAGRACAHBVTGACCBHDD Direction: Forward Position #: 4 Overlap #: 18 Alignment: HVMVDGAACDCBHTGWCCCHWD ---BAGGYCABHBTGACCKHV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRRAR_DR5 Combined Motif Reverse Complement Reverse Complement DDHBGGTCAVBDTGTKCTVRVD TGACCTCKVVBTGAYCK DTDDSSTCWVVDTGABCKVRVD Direction: Forward Position #: 2 Overlap #: 17 Alignment: DDHBGGTCAVBDTGTKCTVRVD -TGACCTCKVVBTGAYCK---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement DTDDSSTCWVVDTGABCKVRVD MGGTCAGGGTGACCTRDBHV DTDVGGTCAVVBTGACCTVRVHV Direction: Forward Position #: 4 Overlap #: 19 Alignment: DTDDSSTCWVVDTGABCKVRVD- ---MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfp423 Reverse Complement Reverse Complement VDVMVAGGTCABVVTGACCBHAD GYRYCCMTKGGYRSC GYRBCCMWGGKCASCVTGACCBHAD Direction: Forward Position #: 3 Overlap #: 13 Alignment: --VDVMVAGGTCABVVTGACCBHAD GYRYCCMTKGGYRSC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 18 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 ESR1 Reverse Complement Reverse Complement BGRRRGRGGRTGRTTYGGGG MGGTCAGGGTGACCTRDBHV VVGGDSAGGGTGRYYTGGGVB Direction: Backward Position #: 2 Overlap #: 19 Alignment: BGRRRGRGGRTGRTTYGGGG- -MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Reverse Complement Reverse Complement BVCCCAKKKCACCCTSDCCVV VRVDGGHACAVDDKGTHCTDWH BVVVVRGDWCAVBBTGTHCBDWH Direction: Forward Position #: 2 Overlap #: 20 Alignment: BVCCCAKKKCACCCTSDCCVV-- -VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Original Motif HWDVGDACABBVTGWDCKVVVVB VHRGGTCABDBTGMCCTB HHDRGGWCABBVTGHVCTVVVVB Direction: Forward Position #: 2 Overlap #: 18 Alignment: HWDVGDACABBVTGWDCKVVVVB -VHRGGTCABDBTGMCCTB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif BVVVVAGVHCAVBBTGWCCKDHH DGVBCABTGDWGCGKRRCSR DRVBCAGBDMAGCGTGDCCDDHH Direction: Forward Position #: 1 Overlap #: 20 Alignment: BVVVVAGVHCAVBBTGWCCKDHH DGVBCABTGDWGCGKRRCSR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Reverse Complement Original Motif HHDHGGDCACGCTRHVCTGBBMH GGGGCCCAAGGGGG ACGCTRHVCTGBBMHHWHBGGKSHHDHGGDCACGCTRH Direction: Backward Position #: 16 Overlap #: 8 Alignment: ------HHDHGGDCACGCTRHVCTGBBMH ---------------GGGGCCCAAGGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 19 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Ar Reverse Complement Reverse Complement GGYGCTGTCCATGGTGCTGAA VRVDGGHACAVDDKGTHCTDWH GVHGSTRYMCDDKGTBCTKAHV Direction: Backward Position #: 1 Overlap #: 21 Alignment: -GGYGCTGTCCATGGTGCTGAA VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Reverse Complement Original Motif VHTYAGBACYDDGRKKASCDVC DGVBCABTGDWGCGKRRCSR DGVBHWHDGDASCRKRRBBASCDVC Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---VHTYAGBACYDDGRKKASCDVC DGVBCABTGDWGCGKRRCSR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Reverse Complement GVHGSTBBMMRMGSTDCDDWDBBCD MGGTCAGGGTGACCTRDBHV MGGTSABGSTGVCCDVGSHVCDDWDBBCD Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----GVHGSTBBMMRMGSTDCDDWDBBCD MGGTCAGGGTGACCTRDBHV--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Original Motif HGVBHWHDGVHSCBDGGBCASCBTSACCY VHRGGTCABDBTGMCCTB HGVBHWHDGGRBCADGGTSACCHBSACCY Direction: Forward Position #: 7 Overlap #: 18 Alignment: HGVBHWHDGVHSCBDGGBCASCBTSACCY ------VHRGGTCABDBTGMCCTB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Reverse Complement Original Motif MGGTSVHGGTSACCHTGVMCCDDWDBBCD RGGBCAAAGKYCA MGGTSVVGBYMAMSDBSAMCCDDWDBBCD Direction: Forward Position #: 6 Overlap #: 13 Alignment: MGGTSVHGGTSACCHTGVMCCDDWDBBCD -----RGGBCAAAGKYCA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Reverse Complement HGVBHWHDGGRTSVHSYTYKBCVBSACCY TGRCCTKTGHCCKAB TGVCCTBTGBVYBABSYTYKBCVBSACCY Direction: Forward Position #: 1 Overlap #: 15 Alignment: HGVBHWHDGGRTSVHSYTYKBCVBSACCY TGRCCTKTGHCCKAB-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Tcfcp2l1 Reverse Complement Original Motif MGGTSVVGBYMAMSBTBKVBCAVAGGBCA CCAGYYHVADCCRG CMRGYBVVRDCMAGSBTBKVBCAVAGGBCA Direction: Forward Position #: 2 Overlap #: 13 Alignment: -MGGTSVVGBYMAMSBTBKVBCAVAGGBCA CCAGYYHVADCCRG---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Original Motif Reverse Complement CMRGYBVVRDCMAGSBTBKVBCAVAGGBCA VAGGCCBBGGCVBB CAGGCCBBGGCVVVSBTBKVBCAVAGGBCA Direction: Forward Position #: 1 Overlap #: 14 Alignment: CMRGYBVVRDCMAGSBTBKVBCAVAGGBCA VAGGCCBBGGCVBB---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRAVDR Combined Motif Reverse Complement Original Motif TGVCCTBTGBVYBABSVBVGCCBBGGCCTG GGGTCAWBGRGTTCA TGVCCTBTGBVYBABSVBVGCCVGGTCMTVGRGTTCA Direction: Forward Position #: 23 Overlap #: 8 Alignment: TGVCCTBTGBVYBABSVBVGCCBBGGCCTG------- ----------------------GGGTCAWBGRGTTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRRAR_DR5 Combined Motif Original Motif Reverse Complement TGVCCTBTGBVYBABSVBVGCCVGGTCMTVGRGTTCA TGACCTCKVVBTGAYCK TGACCTBTVVVTGAYCBBVGCCVGGTCMTVGRGTTCA Direction: Forward Position #: 1 Overlap #: 17 Alignment: TGVCCTBTGBVYBABSVBVGCCVGGTCMTVGRGTTCA TGACCTCKVVBTGAYCK-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 20 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA NR1H2RXRA Original Motif Original Motif BTRGGDCARAGGKCA AAAGGTCAAAGGTCAAC ACVDRGGTCAAAGGTCA Direction: Backward Position #: 3 Overlap #: 15 Alignment: BTRGGDCARAGGKCA-- AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRRAR_DR5 Reverse Complement Reverse Complement TGACCTTTGACCKDBGT TGACCTCKVVBTGAYCK TGACCTBTSVCYKAYCT Direction: Forward Position #: 1 Overlap #: 17 Alignment: TGACCTTTGACCKDBGT TGACCTCKVVBTGAYCK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement TGACCTBTSVCYKAYCT BAGGYCABHBTGACCKHV TGASSTCWBVBTGACCKHV Direction: Forward Position #: 2 Overlap #: 16 Alignment: TGACCTBTSVCYKAYCT-- -BAGGYCABHBTGACCKHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Reverse Complement Original Motif VHRGGTCABVBWGASSTCA HWDAGHACRHHVTGTHCCHVMV VHDDRKCACRBHVHGBWCMHVMV Direction: Forward Position #: 2 Overlap #: 18 Alignment: VHRGGTCABVBWGASSTCA---- -HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Reverse Complement VHDDRKCACRBHVHGBWCMHVMV MSGKKRCGCWDCABTGBBCD MVRDDDCRCDBHVDBBHBMDVMV Direction: Forward Position #: 1 Overlap #: 20 Alignment: VHDDRKCACRBHVHGBWCMHVMV MSGKKRCGCWDCABTGBBCD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Reverse Complement MVRDDDCRCDBHVDBBHBMDVMV MGGTCAGGGTGACCTRDBHV MGGTCAGDDTSACHTVVBBBHBMDVMV Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----MVRDDDCRCDBHVDBBHBMDVMV MGGTCAGGGTGACCTRDBHV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Original Motif Reverse Complement MGGTCAGDDTSACHTVVBBBHBMDVMV BGRRRGRGGRTGRTTYGGGG BVGGDSRGGGTGRYYTGGGGBHBMDVMV Direction: Forward Position #: 2 Overlap #: 19 Alignment: -MGGTCAGDDTSACHTVVBBBHBMDVMV BGRRRGRGGRTGRTTYGGGG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Reverse Complement BVGGDSRGGGTGRYYTGGGGBHBMDVMV GGYGCTGTCCATGGTGCTGAA BVGGDGRVGSTGDCCHDGGTBCTVVVMV Direction: Forward Position #: 6 Overlap #: 21 Alignment: BVGGDSRGGGTGRYYTGGGGBHBMDVMV -----GGYGCTGTCCATGGTGCTGAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Reverse Complement Original Motif VRBBVAGBACCHHGGDCASCVMCDCCVB TGAMCTTTGMMCYT TGAVCTBWGVACCBHGGDCASCVMCDCCVB Direction: Forward Position #: 3 Overlap #: 12 Alignment: --VRBBVAGBACCHHGGDCASCVMCDCCVB TGAMCTTTGMMCYT---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Original Motif Reverse Complement TGAVCTBWGVACCBHGGDCASCVMCDCCVB CCCCCTTGGGCCCC TGAVCTBWGVACCBHGGDCASCVCCCCCBTGGGCCCC Direction: Forward Position #: 24 Overlap #: 7 Alignment: TGAVCTBWGVACCBHGGDCASCVMCDCCVB------- -----------------------CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 21 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Zfp423 Original Motif Original Motif GGGGCCCAAGGGGG GSMMCCYARGGKKKC GGSVCCYARGGGGGC Direction: Forward Position #: 1 Overlap #: 14 Alignment: GGGGCCCAAGGGGG- GSMMCCYARGGKKKC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Reverse Complement Original Motif GCCCCCKTKGGVSCC CCCCMAAMCAMCCMCMMMCV GCCCCMHWVSRMCCCCMMMCV Direction: Forward Position #: 2 Overlap #: 14 Alignment: GCCCCCKTKGGVSCC------ -CCCCMAAMCAMCCMCMMMCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Reverse Complement Original Motif BGRRRGGGGRKSVWHRGGGGC BTRGGDCARAGGKCA BBRGGGSRRRGGBHWRGGGGC Direction: Forward Position #: 1 Overlap #: 15 Alignment: BGRRRGGGGRKSVWHRGGGGC BTRGGDCARAGGKCA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Original Motif Original Motif BBRGGGSRRRGGBHWRGGGGC BBVGCCBVGGCCTV BBRGSBBRGGSSTBWRGGGGC Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBRGGGSRRRGGBHWRGGGGC BBVGCCBVGGCCTV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Tcfcp2l1 Original Motif Original Motif BBRGSBBRGGSSTBWRGGGGC CCAGYYHVADCCRG CCRGBBBVRRCCDGWRGGGGC Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBRGSBBRGGSSTBWRGGGGC CCAGYYHVADCCRG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRRAR_DR5 Reverse Complement Reverse Complement GCCCCMWCDGGMMBBVBCKGG TGACCTCKVVBTGAYCK TGMCCYCTCVGKVAYCDBCKGG Direction: Forward Position #: 2 Overlap #: 16 Alignment: -GCCCCMWCDGGMMBBVBCKGG TGACCTCKVVBTGAYCK----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Original Motif TGMCCYCTCVGKVAYCDBCKGG DGVBCABTGDWGCGKRRCSR TGVBCHVTSDDGVRBVDCCDGG Direction: Forward Position #: 1 Overlap #: 20 Alignment: TGMCCYCTCVGKVAYCDBCKGG DGVBCABTGDWGCGKRRCSR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRAVDR Reverse Complement Original Motif CCHGGHVVKVCHDSAVDGBBCA GGGTCAWBGRGTTCA RGGYCAHVGRGTTCACCHGGHV Direction: Backward Position #: 1 Overlap #: 15 Alignment: CCHGGHVVKVCHDSAVDGBBCA -------GGGTCAWBGRGTTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 22 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 NR1H2RXRA Original Motif Reverse Complement TGAMCTTTGMMCYT GTTGACCTTTGACCTTT TTGACCTTTGACCTTGT Direction: Backward Position #: 2 Overlap #: 14 Alignment: --TGAMCTTTGMMCYT- GTTGACCTTTGACCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Original Motif ACAAGGTCAAAGGTCAA BTRGGDCARAGGKCA ASDRGGKCAAAGGTCAA Direction: Forward Position #: 2 Overlap #: 15 Alignment: ACAAGGTCAAAGGTCAA -BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRRAR_DR5 Original Motif Original Motif ASDRGGKCAAAGGTCAA RGKTCABVVRGAGGTCA RRBTVRDBSARAGGTCAA Direction: Forward Position #: 2 Overlap #: 16 Alignment: -ASDRGGKCAAAGGTCAA RGKTCABVVRGAGGTCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Original Motif Reverse Complement RRBTVRDBSARAGGTCAA BAGGYCABHBTGACCKHV BAGGTCABBBWGASSTHAA Direction: Forward Position #: 2 Overlap #: 17 Alignment: -RRBTVRDBSARAGGTCAA BAGGYCABHBTGACCKHV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif BAGGTCABBBWGASSTHAA TTCAGCACCATGGACAGCKCC TTCAGCACCATGGACAGBDCMBBBWGASSTHAA Direction: Forward Position #: 15 Overlap #: 7 Alignment: --------------BAGGTCABBBWGASSTHAA TTCAGCACCATGGACAGCKCC------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Reverse Complement TTCAGCACCATGGACAGBDCMBBBWGASSTHAA MSGKKRCGCWDCABTGBBCD THCRGBACSMTGSABWGBDCVBBBWGASSTHAA Direction: Forward Position #: 2 Overlap #: 20 Alignment: TTCAGCACCATGGACAGBDCMBBBWGASSTHAA -MSGKKRCGCWDCABTGBBCD------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Reverse Complement Reverse Complement TTDASSTCWBBBBGDBCWBTSCARSGTBCKGHA TGMYCTTTGBCCK TTDASBKMHCTTTGBBCDBTSCARSGTBCKGHA Direction: Forward Position #: 6 Overlap #: 13 Alignment: TTDASSTCWBBBBGDBCWBTSCARSGTBCKGHA -----TGMYCTTTGBCCK--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Original Motif Original Motif TTDASBKMHCTTTGBBCDBTSCARSGTBCKGHA BBVGCCBVGGCCTV BBVRSYKMGGCCTGBBCDBTSCARSGTBCKGHA Direction: Forward Position #: 1 Overlap #: 14 Alignment: TTDASBKMHCTTTGBBCDBTSCARSGTBCKGHA BBVGCCBVGGCCTV------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif BBVRSYKMGGCCTGBBCDBTSCARSGTBCKGHA VDBHMAGGTCACCCTGACCY BBBVVHGGKSHCYVTGMCCTSCARSGTBCKGHA Direction: Forward Position #: 1 Overlap #: 20 Alignment: BBVRSYKMGGCCTGBBCDBTSCARSGTBCKGHA VDBHMAGGTCACCCTGACCY------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRAVDR Combined Motif Original Motif Original Motif BBBVVHGGKSHCYVTGMCCTSCARSGTBCKGHA GGGTCAWBGRGTTCA BBBVVHGGKSHCYVTGMCCTSCAGGGTCMDVVRGTTCA Direction: Forward Position #: 24 Overlap #: 10 Alignment: BBBVVHGGKSHCYVTGMCCTSCARSGTBCKGHA----- -----------------------GGGTCAWBGRGTTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 23 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MZF1_1-4 INSM1 Reverse Complement Reverse Complement TCCCCV MGCCCCCTGMCA GMCAYCCCCWMG Direction: Backward Position #: 5 Overlap #: 6 Alignment: --TCCCCV---- MGCCCCCTGMCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MZF1_5-13 Reverse Complement Original Motif CRWGGGGMTGYC BKAGGGGDAD BDAGGGGVWGYC Direction: Forward Position #: 1 Overlap #: 10 Alignment: CRWGGGGMTGYC BKAGGGGDAD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Reverse Complement Reverse Complement GMCWBCCCCTHB GCCYCMCCCD GCCHCCCCCWHB Direction: Forward Position #: 1 Overlap #: 10 Alignment: GMCWBCCCCTHB GCCYCMCCCD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Reverse Complement Original Motif BDWGGGGGHGGC GGGGCCCAAGGGGG BDGGGGSSHRRBGGGG Direction: Forward Position #: 3 Overlap #: 10 Alignment: BDWGGGGGHGGC---- --GGGGCCCAAGGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Reverse Complement Reverse Complement CCCCBKKDSSCCCCHB TCCCAG YCCCMGKDSSCCCCHB Direction: Forward Position #: 1 Overlap #: 6 Alignment: CCCCBKKDSSCCCCHB TCCCAG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 Combined Motif Reverse Complement Reverse Complement BDGGGGSSHRCYGGGM GGGGGYGGGG BDGGGGGGHGSKGGGM Direction: Forward Position #: 4 Overlap #: 10 Alignment: BDGGGGSSHRCYGGGM ---GGGGGYGGGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Original Motif Reverse Complement BDGGGGGGHGSKGGGM BGRRRGRGGRTGRTTYGGGG BDGBGGGGVRGGGKGVTTYGGGG Direction: Forward Position #: 4 Overlap #: 13 Alignment: BDGGGGGGHGSKGGGM------- ---BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NFKB1 Combined Motif Original Motif Original Motif BDGBGGGGVRGGGKGVTTYGGGG GGGGRTTCCCC GGGGGRTTYSSSBDGBGGGGVRG Direction: Backward Position #: 2 Overlap #: 11 Alignment: BDGBGGGGVRGGGKGVTTYGGGG -----------GGGGRTTCCCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Reverse Complement GGGGGRTTYSSSBDGBGGGGVRG GGYGCTGTCCATGGTGCTGAA GGGGGRTTYSSSBDGBGGVGCKGTCCATGGTGCTGAA Direction: Forward Position #: 17 Overlap #: 7 Alignment: GGGGGRTTYSSSBDGBGGGGVRG-------------- ----------------GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Ar Reverse Complement Original Motif TTCAGCACCATGGACRGCVCCBCHBSSSKAAKCCCCC HWDAGHACRHHVTGTHCCHVMV HTHAGHACMHHGKRYDSCVVCBCHBSSSKAAKCCCCC Direction: Forward Position #: 1 Overlap #: 22 Alignment: TTCAGCACCATGGACRGCVCCBCHBSSSKAAKCCCCC HWDAGHACRHHVTGTHCCHVMV--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 24 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar REST Reverse Complement Reverse Complement VRVDGGHACAVDDKGTHCTDWH GGYGCTGTCCATGGTGCTGAA GVHGSTRYMCDDKGTBCTKAHV Direction: Backward Position #: 1 Overlap #: 21 Alignment: VRVDGGHACAVDDKGTHCTDWH -GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Reverse Complement GVHGSTRYMCDDKGTBCTKAHV MSGKKRCGCWDCABTGBBCD GVVGBTRCVCDDBRTBSTDMDV Direction: Forward Position #: 2 Overlap #: 20 Alignment: GVHGSTRYMCDDKGTBCTKAHV -MSGKKRCGCWDCABTGBBCD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Original Motif VDYHASVAMBDDGVGKABCVVC VDBHMAGGTCACCCTGACCY VDBHMVRRHCAHSVKGACCBVC Direction: Forward Position #: 1 Overlap #: 20 Alignment: VDYHASVAMBDDGVGKABCVVC VDBHMAGGTCACCCTGACCY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Original Motif Reverse Complement VDBHMVRRHCAHSVKGACCBVC BGRRRGRGGRTGRTTYGGGG VDBHHVRRDSRVGVTGRYYYGVGG Direction: Forward Position #: 5 Overlap #: 18 Alignment: VDBHMVRRHCAHSVKGACCBVC-- ----BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Reverse Complement Reverse Complement CCVCMKKKCAVCVKSHMMVDDBHV TGRCCTKTGHCCKAB YSVCCTKTSVCCBDSHMMVDDBHV Direction: Forward Position #: 1 Overlap #: 15 Alignment: CCVCMKKKCAVCVKSHMMVDDBHV TGRCCTKTGHCCKAB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Reverse Complement VDBHHVRRDSDBGGBSARAGGBSK BAGGYCABHBTGACCKHV VDBHVVGGHCABBVTGAMVKDBSK Direction: Forward Position #: 5 Overlap #: 18 Alignment: VDBHHVRRDSDBGGBSARAGGBSK ----BAGGYCABHBTGACCKHV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Reverse Complement Reverse Complement YSBHYVRTCAVBBTGHCCBVDBHV TGMYCTTTGBCCK TSVYCDDTSVCCBTGHCCBVDBHV Direction: Forward Position #: 1 Overlap #: 13 Alignment: YSBHYVRTCAVBBTGHCCBVDBHV TGMYCTTTGBCCK----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 Combined Motif Original Motif Original Motif TSVYCDDTSVCCBTGHCCBVDBHV TKKTTTGTTTTTTT TSHBBTTTSHYYTTBTCCBVDBHV Direction: Forward Position #: 3 Overlap #: 14 Alignment: TSVYCDDTSVCCBTGHCCBVDBHV --TKKTTTGTTTTTTT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Tcfcp2l1 Reverse Complement Original Motif VDBHVVGGAVAAMMHSAAABVHSA CCAGYYHVADCCRG CCVGHYHVRRMCAGMMHSAAABVHSA Direction: Forward Position #: 3 Overlap #: 12 Alignment: --VDBHVVGGAVAAMMHSAAABVHSA CCAGYYHVADCCRG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Original Motif Original Motif CCVGHYHVRRMCAGMMHSAAABVHSA CACACAVRCACACA HSAVACASAVACAMACACCVGHYHVR Direction: Backward Position #: 4 Overlap #: 14 Alignment: CCVGHYHVRRMCAGMMHSAAABVHSA ---------CACACAVRCACACA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 25 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Arnt Esrrb Original Motif Original Motif CACGTG CACGTG CACGTG Direction: Backward Position #: 1 Overlap #: 6 Alignment: CACGTG CACGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MYCMAX Reverse Complement Reverse Complement CACGTG ACCACGTGSTM ACCACGTGSTM Direction: Forward Position #: 3 Overlap #: 6 Alignment: --CACGTG--- ACCACGTGSTM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Original Motif Reverse Complement ACCACGTGSTM DCCACGTGCV DCCACGTGSDM Direction: Forward Position #: 1 Overlap #: 10 Alignment: ACCACGTGSTM DCCACGTGCV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Reverse Complement DCCACGTGSDM GCCACGTGSD DCCACGTGSDM Direction: Forward Position #: 1 Overlap #: 10 Alignment: DCCACGTGSDM GCCACGTGSD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HIF1AARNT Reverse Complement Original Motif RHSCACGTGGH VBACGTGV VBRCRYGYGGH Direction: Forward Position #: 1 Overlap #: 8 Alignment: RHSCACGTGGH VBACGTGV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ArntAhr Reverse Complement Reverse Complement DCCMCMMGKBV CACGCM CMCGCMMGKBV Direction: Forward Position #: 1 Overlap #: 6 Alignment: DCCMCMMGKBV CACGCM----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ZEB1 Combined Motif Reverse Complement Reverse Complement VBRCRYGCGYG HAGGTG VHASGTGCGYG Direction: Forward Position #: 2 Overlap #: 6 Alignment: VBRCRYGCGYG -HAGGTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Original Motif Original Motif VHASGTGCGYG HGCGTGGGCGK HGCRBGKGCGBG Direction: Forward Position #: 2 Overlap #: 10 Alignment: -VHASGTGCGYG HGCGTGGGCGK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MIZF Reverse Complement Original Motif CVCGCYCVMGCH BAACGTCCGC BHACGYCCGCGCH Direction: Forward Position #: 2 Overlap #: 9 Alignment: -CVCGCYCVMGCH BAACGTCCGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Reverse Complement Original Motif HGCGCGGKCGTHV GGGGCCCAAGGGGG GGGGCSCRMGGGSGTHV Direction: Forward Position #: 5 Overlap #: 10 Alignment: ----HGCGCGGKCGTHV GGGGCCCAAGGGGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 26 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ArntAhr Egr1 Reverse Complement Reverse Complement CACGCM YCGCCCACGCH CACGCMYCGCC Direction: Backward Position #: 1 Overlap #: 6 Alignment: -----CACGCM YCGCCCACGCH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HIF1AARNT Original Motif Reverse Complement CACGCMYCGCC VCACGTBV VCACGYHHCGCC Direction: Forward Position #: 2 Overlap #: 7 Alignment: -CACGCMYCGCC VCACGTBV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Original Motif Original Motif VCACGYHHCGCC CAYACACACACACA CAYACACACACACRYHHCGCC Direction: Forward Position #: 10 Overlap #: 5 Alignment: ---------VCACGYHHCGCC CAYACACACACACA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Esrrb Original Motif Reverse Complement CAYACACACACACRYHHCGCC CACGTG CACRYRCACACACRYHHCGCC Direction: Forward Position #: 1 Overlap #: 6 Alignment: CAYACACACACACRYHHCGCC CACGTG--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Arnt Original Motif Reverse Complement CACRYRCACACACRYHHCGCC CACGTG CACGTRCACACACRYHHCGCC Direction: Forward Position #: 1 Overlap #: 6 Alignment: CACRYRCACACACRYHHCGCC CACGTG--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Original Motif Original Motif CACGTRCACACACRYHHCGCC CACACAVRCACACA CACRYRCACACACAYHHCGCC Direction: Forward Position #: 1 Overlap #: 14 Alignment: CACGTRCACACACRYHHCGCC CACACAVRCACACA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MYCMAX Combined Motif Original Motif Reverse Complement CACRYRCACACACAYHHCGCC ACCACGTGSTM CGCCMMCACRYRBBHCACRYR Direction: Backward Position #: 5 Overlap #: 11 Alignment: CACRYRCACACACAYHHCGCC ------ACCACGTGSTM---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 27 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- E2F1 PLAG1 Original Motif Reverse Complement TTTSGCGC CCCCCTTGGGCCCC CYYYSKYGSGCCCC Direction: Forward Position #: 2 Overlap #: 8 Alignment: -TTTSGCGC----- CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Reverse Complement Original Motif GGGGCSCKYSKKMG BTRGGDCARAGGKCA BGRGGSSMRVGGKMR Direction: Forward Position #: 2 Overlap #: 14 Alignment: -GGGGCSCKYSKKMG BTRGGDCARAGGKCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Reverse Complement Reverse Complement MRRCCBMYSSCCMCB TGMYCTTTGBCCK HGRYCTHTGBCCBCB Direction: Forward Position #: 1 Overlap #: 13 Alignment: MRRCCBMYSSCCMCB TGMYCTTTGBCCK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Reverse Complement Original Motif BGBGGBCAHAGKKCH AAAGGTCAAAGGTCAAC VRRGGTCAAAGGTCAAC Direction: Forward Position #: 1 Overlap #: 15 Alignment: BGBGGBCAHAGKKCH-- AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Original Motif Reverse Complement VRRGGTCAAAGGTCAAC AKGYYCAAAGRTCA VRDGBTCAAAGGTCAAC Direction: Forward Position #: 2 Overlap #: 14 Alignment: VRRGGTCAAAGGTCAAC -AKGYYCAAAGRTCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfp423 Combined Motif Reverse Complement Original Motif GTTGACCTTTGABCHKB GSMMCCYARGGKKKC CCTTTGABCHKBGTTGMGTTGACCTTTGA Direction: Backward Position #: 13 Overlap #: 5 Alignment: ----------GTTGACCTTTGABCHKB ------------GSMMCCYARGGKKKC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 28 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Egr1 RREB1 Original Motif Reverse Complement HGCGTGGGCGK BGRRRGRGGRTGRTTYGGGG GGDGSKKGKKYGGBGRRRGR Direction: Backward Position #: 3 Overlap #: 11 Alignment: -------HGCGTGGGCGK-- BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Original Motif Reverse Complement GGDGSKKGKKYGGBGRRRGR TGTGTGTGTGTKTG TGKGTGTGTGKKTGGBGRRRGR Direction: Forward Position #: 3 Overlap #: 12 Alignment: --GGDGSKKGKKYGGBGRRRGR TGTGTGTGTGTKTG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Original Motif Reverse Complement TGKGTGTGTGKKTGGBGRRRGR TGTGTGKVTGTGTG TGTGTGTGTGTGTGGBGRRRGR Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGKGTGTGTGKKTGGBGRRRGR TGTGTGKVTGTGTG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfp423 Combined Motif Reverse Complement Reverse Complement MCMMMCBCCACACACACACACA GYRYCCMTKGGYRSC MCMMMCBCCACACACRCACMCATKGGYRSC Direction: Forward Position #: 16 Overlap #: 7 Alignment: MCMMMCBCCACACACACACACA-------- ---------------GYRYCCMTKGGYRSC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Reverse Complement GSMMCCYATGRGTGKGTGTGTGGBGRRRGR VAGGCCBBGGCVBB GSMMCCYAKGCSKBKGYGBGTGGBGRRRGR Direction: Forward Position #: 7 Overlap #: 14 Alignment: GSMMCCYATGRGTGKGTGTGTGGBGRRRGR ------VAGGCCBBGGCVBB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif GSMMCCYAKGCSKBKGYGBGTGGBGRRRGR DGVBCABTGDWGCGKRRCSR GSMMCCBRBGCVBBGVHGBGTGRCSRRRGR Direction: Forward Position #: 7 Overlap #: 20 Alignment: GSMMCCYAKGCSKBKGYGBGTGGBGRRRGR ------DGVBCABTGDWGCGKRRCSR---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif INSM1 Original Motif Reverse Complement GSMMCCBRBGCVBBGVHGBGTGRCSRRRGR MGCCCCCTGMCA MGSCCCCHRVSMVBBGVHGBGTGRCSRRRGR Direction: Forward Position #: 2 Overlap #: 11 Alignment: -GSMMCCBRBGCVBBGVHGBGTGRCSRRRGR MGCCCCCTGMCA------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Original Motif Reverse Complement MGSCCCCHRVSMVBBGVHGBGTGRCSRRRGR TGMYCTTTGBCCK HGVCCYYTGVBCBBBGVHGBGTGRCSRRRGR Direction: Forward Position #: 1 Overlap #: 13 Alignment: MGSCCCCHRVSMVBBGVHGBGTGRCSRRRGR TGMYCTTTGBCCK------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 Combined Motif Reverse Complement Original Motif MCMMMSGMCACBCHVCVVBGBVCAKKGGVCH CCCCKCCCCC MCCCCCKCCHCBCHVCVVBGBVCAKKGGVCH Direction: Forward Position #: 3 Overlap #: 10 Alignment: MCMMMSGMCACBCHVCVVBGBVCAKKGGVCH --CCCCKCCCCC------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Original Motif Reverse Complement MCCCCCKCCHCBCHVCVVBGBVCAKKGGVCH GCCYCMCCCD VCCCCMCCCHCBCHVCVVBGBVCAKKGGVCH Direction: Forward Position #: 1 Overlap #: 10 Alignment: MCCCCCKCCHCBCHVCVVBGBVCAKKGGVCH GCCYCMCCCD--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 29 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Pax5 Reverse Complement Reverse Complement MGGTCAGGGTGACCTRDBHV MSGKKRCGCWDCABTGBBCD MGGTBAVGCTKVMCTGBBMD Direction: Backward Position #: 1 Overlap #: 20 Alignment: MGGTCAGGGTGACCTRDBHV MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Ar Original Motif Original Motif MGGTBAVGCTKVMCTGBBMD HWDAGHACRHHVTGTHCCHVMV HHDRKHACRBHVHSHWSBBVHV Direction: Forward Position #: 2 Overlap #: 20 Alignment: -MGGTBAVGCTKVMCTGBBMD- HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Reverse Complement Original Motif VHVBBSWHSHVHBMGTDYMHHH CCCCMAAMCAMCCMCMMMCV VCVCVVAMCACCVMSHVCCVHH Direction: Forward Position #: 1 Overlap #: 20 Alignment: VHVBBSWHSHVHBMGTDYMHHH CCCCMAAMCAMCCMCMMMCV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif VCVCVVAMCACCVMSHVCCVHH VHRGGTCABDBTGMCCTB VCVCVVAVSWCAVVBTVMCCTB Direction: Forward Position #: 5 Overlap #: 18 Alignment: VCVCVVAMCACCVMSHVCCVHH ----VHRGGTCABDBTGMCCTB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRRAR_DR5 Combined Motif Original Motif Reverse Complement VCVCVVAVSWCAVVBTVMCCTB TGACCTCKVVBTGAYCK VCVCTVABCTCHVVBTGACCTB Direction: Forward Position #: 5 Overlap #: 17 Alignment: VCVCVVAVSWCAVVBTVMCCTB ----TGACCTCKVVBTGAYCK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif VAGGTCABVVHGAGBTVAGVGV TTCAGCACCATGGACAGCKCC TTCAGSRYCABGGASAGBKCMGVGV Direction: Forward Position #: 4 Overlap #: 18 Alignment: ---VAGGTCABVVHGAGBTVAGVGV TTCAGCACCATGGACAGCKCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRAVDR Combined Motif Original Motif Original Motif TTCAGSRYCABGGASAGBKCMGVGV GGGTCAWBGRGTTCA TTCAGGGTCAHVGRGWKCDCMGVGV Direction: Forward Position #: 5 Overlap #: 15 Alignment: TTCAGSRYCABGGASAGBKCMGVGV ----GGGTCAWBGRGTTCA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Reverse Complement TTCAGGGTCAHVGRGWKCDCMGVGV TGRCCTKTGHCCKAB TTCAKGRYCWBTGVSHKVVCMGVGV Direction: Forward Position #: 5 Overlap #: 15 Alignment: TTCAGGGTCAHVGRGWKCDCMGVGV ----TGRCCTKTGHCCKAB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Reverse Complement TTCAKGRYCWBTGVSHKVVCMGVGV VAGGCCBBGGCVBB TTCABRGSCCBBGVCHBVVCMGVGV Direction: Forward Position #: 5 Overlap #: 14 Alignment: TTCAKGRYCWBTGVSHKVVCMGVGV ----VAGGCCBBGGCVBB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfp423 Reverse Complement Original Motif VCVCRGVVBDGVCVVGGSCKBTGAA GSMMCCYARGGKKKC GSMMCCBDDGGKKBCVVGGSCKBTGAA Direction: Forward Position #: 3 Overlap #: 13 Alignment: --VCVCRGVVBDGVCVVGGSCKBTGAA GSMMCCYARGGKKKC------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 30 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Ar Reverse Complement Original Motif BAGGYCABHBTGACCKHV HWDAGHACRHHVTGTHCCHVMV HWHAGDWCAHHVTGWCCBHVMV Direction: Forward Position #: 3 Overlap #: 18 Alignment: --BAGGYCABHBTGACCKHV-- HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif VRVHBGGWCAVDDTGWHCTHWH DGVBCABTGDWGCGKRRCSR DRVDBRVTSADGBKGDVCBDWH Direction: Forward Position #: 1 Overlap #: 20 Alignment: VRVHBGGWCAVDDTGWHCTHWH DGVBCABTGDWGCGKRRCSR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Original Motif Reverse Complement DRVDBRVTSADGBKGDVCBDWH BGRRRGRGGRTGRTTYGGGG BGRDRGDVGRTGRHKYGGGRCBDWH Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---DRVDBRVTSADGBKGDVCBDWH BGRRRGRGGRTGRTTYGGGG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif HWHVGMCCCMRHKCAMCVHCMHMCB TTCAGCACCATGGACAGCKCC HTCAGCACCHDGGMMASCDCCHMCB Direction: Forward Position #: 1 Overlap #: 21 Alignment: HWHVGMCCCMRHKCAMCVHCMHMCB TTCAGCACCATGGACAGCKCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement HTCAGCACCHDGGMMASCDCCHMCB MGGTCAGGGTGACCTRDBHV HTCAGSHCMVDGKVMMCBDVVHMCB Direction: Forward Position #: 4 Overlap #: 20 Alignment: HTCAGCACCHDGGMMASCDCCHMCB ---MGGTCAGGGTGACCTRDBHV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRRAR_DR5 Reverse Complement Reverse Complement BGRDVVHVGRYVRCHVYGHSCTGAH TGACCTCKVVBTGAYCK TBRBCBVBVSDTSACCBYGHSCTGAH Direction: Forward Position #: 2 Overlap #: 16 Alignment: -BGRDVVHVGRYVRCHVYGHSCTGAH TGACCTCKVVBTGAYCK--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Reverse Complement HTCAGSHCMBGGTSAHSVVVVGBKBA TGRCCTKTGHCCKAB HTCAGBBMCCKKTSHCCDVVVGBKBA Direction: Forward Position #: 6 Overlap #: 15 Alignment: HTCAGSHCMBGGTSAHSVVVVGBKBA -----TGRCCTKTGHCCKAB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif HTCAGBBMCCKKTSHCCDVVVGBKBA BBVGCCBVGGCCTV HTCAGBBVVCBKDGGCCTVVVGBKBA Direction: Forward Position #: 6 Overlap #: 14 Alignment: HTCAGBBMCCKKTSHCCDVVVGBKBA -----BBVGCCBVGGCCTV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Reverse Complement Reverse Complement TBRBCBVVAGGCCDYBGVVBBCTGAH AKGYYCAAAGRTCA DDGBBCAAAGGYCAYBGVVBBCTGAH Direction: Forward Position #: 1 Overlap #: 14 Alignment: TBRBCBVVAGGCCDYBGVVBBCTGAH AKGYYCAAAGRTCA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Tcfcp2l1 Reverse Complement Reverse Complement HTCAGBBVVCBKTGMCCTTTGBBCHD CKGGDTBDMMCTGG CTBRGBBVVHCKKGMCCTTTGBBCHD Direction: Forward Position #: 1 Overlap #: 14 Alignment: HTCAGBBVVCBKTGMCCTTTGBBCHD CKGGDTBDMMCTGG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 31 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Esrrb Arnt Original Motif Original Motif CACGTG CACGTG CACGTG Direction: Forward Position #: 1 Overlap #: 6 Alignment: CACGTG CACGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MYCMAX Reverse Complement Reverse Complement CACGTG ACCACGTGSTM ACCACGTGSTM Direction: Forward Position #: 3 Overlap #: 6 Alignment: --CACGTG--- ACCACGTGSTM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Original Motif Reverse Complement ACCACGTGSTM DCCACGTGCV DCCACGTGSDM Direction: Forward Position #: 1 Overlap #: 10 Alignment: ACCACGTGSTM DCCACGTGCV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Reverse Complement DCCACGTGSDM GCCACGTGSD DCCACGTGSDM Direction: Forward Position #: 1 Overlap #: 10 Alignment: DCCACGTGSDM GCCACGTGSD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HIF1AARNT Reverse Complement Original Motif RHSCACGTGGH VBACGTGV VBRCRYGYGGH Direction: Forward Position #: 1 Overlap #: 8 Alignment: RHSCACGTGGH VBACGTGV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ArntAhr Reverse Complement Reverse Complement DCCMCMMGKBV CACGCM CMCGCMMGKBV Direction: Forward Position #: 1 Overlap #: 6 Alignment: DCCMCMMGKBV CACGCM----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ZEB1 Combined Motif Reverse Complement Reverse Complement VBRCRYGCGYG HAGGTG VHASGTGCGYG Direction: Forward Position #: 2 Overlap #: 6 Alignment: VBRCRYGCGYG -HAGGTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Original Motif Original Motif VHASGTGCGYG HGCGTGGGCGK HGCRBGKGCGBG Direction: Forward Position #: 2 Overlap #: 10 Alignment: -VHASGTGCGYG HGCGTGGGCGK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MIZF Reverse Complement Original Motif CVCGCYCVMGCH BAACGTCCGC BHACGYCCGCGCH Direction: Forward Position #: 2 Overlap #: 9 Alignment: -CVCGCYCVMGCH BAACGTCCGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Reverse Complement Original Motif HGCGCGGKCGTHV GGGGCCCAAGGGGG GGGGCSCRMGGGSGTHV Direction: Forward Position #: 5 Overlap #: 10 Alignment: ----HGCGCGGKCGTHV GGGGCCCAAGGGGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 32 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- EWSR1-FLI1 NR1H2RXRA Original Motif Original Motif GGAAGGAAGGAAGGAAGG AAAGGTCAAAGGTCAAC TCAACRAAGGWMRRARGGGAAGG Direction: Backward Position #: 6 Overlap #: 12 Alignment: GGAAGGAAGGAAGGAAGG----- ------AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 Combined Motif Original Motif Reverse Complement TCAACRAAGGWMRRARGGGAAGG AAAAAAACAAARRA TMAAVAAAGRAARRARGGGAAGG Direction: Forward Position #: 2 Overlap #: 14 Alignment: TCAACRAAGGWMRRARGGGAAGG -AAAAAAACAAARRA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Original Motif Reverse Complement TMAAVAAAGRAARRARGGGAAGG BGRRRGRGGRTGRTTYGGGG TMAAVAAAGRAARRARGGGAAGGGGRTGRTTYGGGG Direction: Forward Position #: 17 Overlap #: 7 Alignment: TMAAVAAAGRAARRARGGGAAGG------------- ----------------BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif SP1 Reverse Complement Original Motif CCCCMAAMCAMCCCCTTCCCKTKKTTKCTTTBTTRA CCCCKCCCCC CCCCVMMCCMMCCCCTTCCCKTKKTTKCTTTBTTRA Direction: Forward Position #: 1 Overlap #: 10 Alignment: CCCCMAAMCAMCCCCTTCCCKTKKTTKCTTTBTTRA CCCCKCCCCC-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF Combined Motif Reverse Complement Reverse Complement TMAAVAAAGRAARRAYGGGAAGGGGRYGGRRBGGGG GCGGACGTTV BGGGGGSGGACGKDVTMAAVAAAGRAARRAYGGGAA Direction: Backward Position #: 6 Overlap #: 10 Alignment: TMAAVAAAGRAARRAYGGGAAGGGGRYGGRRBGGGG ---------------------GCGGACGTTV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 33 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HIF1AARNT Mycn Original Motif Reverse Complement VBACGTGV GCCACGTGSD DSCACGTGSG Direction: Backward Position #: 2 Overlap #: 8 Alignment: -VBACGTGV- GCCACGTGSD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Reverse Complement Original Motif CSCACGTGSH VGCACGTGGH CSCACGTGGH Direction: Forward Position #: 1 Overlap #: 10 Alignment: CSCACGTGSH VGCACGTGGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MYCMAX Reverse Complement Reverse Complement DCCACGTGSG ACCACGTGSTM VCCACGTGSKM Direction: Forward Position #: 1 Overlap #: 10 Alignment: DCCACGTGSG- ACCACGTGSTM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MIZF Reverse Complement Reverse Complement RRSCACGTGGB GCGGACGTTV GCGSACGTKGB Direction: Forward Position #: 1 Overlap #: 10 Alignment: RRSCACGTGGB GCGGACGTTV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Ar Reverse Complement Reverse Complement VCYACGTSCGC VRVDGGHACAVDDKGTHCTDWH VVHASGTVCVVDDKGTHCTDWH Direction: Forward Position #: 1 Overlap #: 11 Alignment: VCYACGTSCGC----------- VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif HWDAGHACRHHVBGBACSTDVV DGVBCABTGDWGCGKRRCSR DDDDSAACRHHGBGKACCBRVV Direction: Forward Position #: 1 Overlap #: 20 Alignment: HWDAGHACRHHVBGBACSTDVV DGVBCABTGDWGCGKRRCSR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Original Motif Reverse Complement DDDDSAACRHHGBGKACCBRVV BGRRRGRGGRTGRTTYGGGG BGRDRRRGRRTGDTKYGGRVCBRVV Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---DDDDSAACRHHGBGKACCBRVV BGRRRGRGGRTGRTTYGGGG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MZF1_5-13 Original Motif Original Motif BGRDRRRGRRTGDTKYGGRVCBRVV BKAGGGGDAD BGAGGGGGRRTGDTKYGGRVCBRVV Direction: Forward Position #: 1 Overlap #: 10 Alignment: BGRDRRRGRRTGDTKYGGRVCBRVV BKAGGGGDAD--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif BGAGGGGGRRTGDTKYGGRVCBRVV VHRGGTCABDBTGMCCTB BGAGGVDRGGTSABBBKGVCCBDVV Direction: Forward Position #: 6 Overlap #: 18 Alignment: BGAGGGGGRRTGDTKYGGRVCBRVV -----VHRGGTCABDBTGMCCTB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRRAR_DR5 Combined Motif Original Motif Reverse Complement BGAGGVDRGGTSABBBKGVCCBDVV TGACCTCKVVBTGAYCK BGAGGTGRBSTSDHBBTGACCKDVV Direction: Forward Position #: 6 Overlap #: 17 Alignment: BGAGGVDRGGTSABBBKGVCCBDVV -----TGACCTCKVVBTGAYCK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 34 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A PPARGRXRA Original Motif Original Motif RGGBCAAAGKYCA BTRGGDCARAGGKCA BTRGGBCAAAGGTCA Direction: Forward Position #: 3 Overlap #: 13 Alignment: --RGGBCAAAGKYCA BTRGGDCARAGGKCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Reverse Complement Original Motif TGACCTTTGBCCKAB TGAMCTTTGMMCYT TGACCTTTGVMCBHB Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGACCTTTGBCCKAB TGAMCTTTGMMCYT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Reverse Complement Original Motif BHVGRVCAAAGGTCA AAAGGTCAAAGGTCAAC VAAGGTCAAAGGTCAAC Direction: Forward Position #: 1 Overlap #: 15 Alignment: BHVGRVCAAAGGTCA-- AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRRAR_DR5 Original Motif Original Motif VAAGGTCAAAGGTCAAC RGKTCABVVRGAGGTCA RGDTMRBBCARAGGTCAAC Direction: Forward Position #: 3 Overlap #: 15 Alignment: --VAAGGTCAAAGGTCAAC RGKTCABVVRGAGGTCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Original Motif RGDTMRBBCARAGGTCAAC DGVBCABTGDWGCGKRRCSR RGDDCRBBSAARSGTVAMSR Direction: Forward Position #: 1 Overlap #: 19 Alignment: RGDTMRBBCARAGGTCAAC- DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Reverse Complement MSYTVACSMTTSVBKGDHCK BAGGYCABHBTGACCKHV MSYTVASGHHWBVBTGACCKHV Direction: Forward Position #: 5 Overlap #: 16 Alignment: MSYTVACSMTTSVBKGDHCK-- ----BAGGYCABHBTGACCKHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Reverse Complement Original Motif VHRGGTCABVBWDDCSTVAMSR HWDAGHACRHHVTGTHCCHVMV VHRGVTHAGVACRDCSTGWMCVHVMV Direction: Forward Position #: 5 Overlap #: 18 Alignment: VHRGGTCABVBWDDCSTVAMSR---- ----HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif VHRGVTHAGVACRDCSTGWMCVHVMV VDBHMAGGTCACCCTGACCY VDVVVWVRKCACVBYGHSHHCVHVMV Direction: Forward Position #: 1 Overlap #: 20 Alignment: VHRGVTHAGVACRDCSTGWMCVHVMV VDBHMAGGTCACCCTGACCY------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Reverse Complement Reverse Complement VRVDVGHDSHCMBVGTGYMVWVVVDV CCCCCTTGGGCCCC VRVDVGHDSHCMBVGTGYCCCCCBWDGGCCCC Direction: Forward Position #: 19 Overlap #: 8 Alignment: VRVDVGHDSHCMBVGTGYMVWVVVDV------ ------------------CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Reverse Complement VRVDVGHDSHCMBVGTGYCCCCCBWDGGCCCC GGYGCTGTCCATGGTGCTGAA VGVHVSTGBCCADGGTGCYSMVCBWDGGCCCC Direction: Forward Position #: 2 Overlap #: 21 Alignment: VRVDVGHDSHCMBVGTGYCCCCCBWDGGCCCC -GGYGCTGTCCATGGTGCTGAA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 35 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- INSM1 PPARGRXRA Original Motif Original Motif TGYCAGGGGGCR BTRGGDCARAGGKCA BTRKGBCAGRGGKCA Direction: Forward Position #: 4 Overlap #: 12 Alignment: ---TGYCAGGGGGCR BTRGGDCARAGGKCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Original Motif Reverse Complement BTRKGBCAGRGGKCA BGRRRGRGGRTGRTTYGGGG BTDGGDVRRRGGTSRTTYGGGG Direction: Forward Position #: 3 Overlap #: 13 Alignment: BTRKGBCAGRGGKCA------- --BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfp423 Original Motif Original Motif BTDGGDVRRRGGTSRTTYGGGG GSMMCCYARGGKKKC GBVVSCHARGGGKSVTTYGGGG Direction: Forward Position #: 1 Overlap #: 15 Alignment: BTDGGDVRRRGGTSRTTYGGGG GSMMCCYARGGKKKC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Original Motif Original Motif GBVVSCHARGGGKSVTTYGGGG RGGBCAAAGKYCA RGVBCMHAGGGBDSVTTYGGGG Direction: Forward Position #: 1 Overlap #: 13 Alignment: GBVVSCHARGGGKSVTTYGGGG RGGBCAAAGKYCA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Reverse Complement CCCCMAABSDBCCCTHYGBVCM MGGTCAGGGTGACCTRDBHV MSSYMAVBSTGVCCTDBSBVCM Direction: Forward Position #: 1 Overlap #: 20 Alignment: CCCCMAABSDBCCCTHYGBVCM MGGTCAGGGTGACCTRDBHV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Reverse Complement Original Motif RGVBSVHAGGBCASBBTRKSSR DGVBCABTGDWGCGKRRCSR DGVBVDVBSVDRSGBVRCBDTRKSSR Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----RGVBSVHAGGBCASBBTRKSSR DGVBCABTGDWGCGKRRCSR------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif DGVBVDVBSVDRSGBVRCBDTRKSSR BBVGCCBVGGCCTV DGVBVVVBGVHDVGGCCYVDTRKSSR Direction: Forward Position #: 6 Overlap #: 14 Alignment: DGVBVDVBSVDRSGBVRCBDTRKSSR -----BBVGCCBVGGCCTV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 36 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Klf4 RREB1 Original Motif Reverse Complement DGGGYGKGGC BGRRRGRGGRTGRTTYGGGG TGGKTKGGGVBGRRRGRGGR Direction: Backward Position #: 1 Overlap #: 10 Alignment: ----------DGGGYGKGGC BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Reverse Complement TGGKTKGGGVBGRRRGRGGR VAGGCCBBGGCVBB TGGKYDGGSCBSGGVGVGGR Direction: Forward Position #: 5 Overlap #: 14 Alignment: TGGKTKGGGVBGRRRGRGGR ----VAGGCCBBGGCVBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif SP1 Reverse Complement Original Motif MCCVCVCCSVGSCCDMYCCA CCCCKCCCCC CCCCBCCCCCGSCCDMYCCA Direction: Forward Position #: 1 Overlap #: 10 Alignment: MCCVCVCCSVGSCCDMYCCA CCCCKCCCCC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 11 Combined Motif Original Motif Original Motif CCCCBCCCCCGSCCDMYCCA CAYACACACACACA CCCCBCCCCCGSCCCAYMCACACACACA Direction: Forward Position #: 15 Overlap #: 6 Alignment: CCCCBCCCCCGSCCDMYCCA-------- --------------CAYACACACACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif INSM1 Reverse Complement Original Motif TGTGTGTGTGYKTGGGSCGGGGGBGGGG TGYCAGGGGGCR TGTSWGKGKGYGTGGGSCGGGGGBGGGG Direction: Forward Position #: 1 Overlap #: 12 Alignment: TGTGTGTGTGYKTGGGSCGGGGGBGGGG TGYCAGGGGGCR---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Reverse Complement Reverse Complement CCCCBCCCCCGSCCCACKCYCRCWSACA DCCACGTGCV DCCMCGTSCVCGSCCCACKCYCRCWSACA Direction: Forward Position #: 2 Overlap #: 9 Alignment: -CCCCBCCCCCGSCCCACKCYCRCWSACA DCCACGTGCV------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif TGTSWGKGKGYGTGGGSCGVGSACGRGGH DGVBCABTGDWGCGKRRCSR TGTSWGKGDGCDBKGRVSVGKVVCGRGGH Direction: Forward Position #: 7 Overlap #: 20 Alignment: TGTSWGKGKGYGTGGGSCGVGSACGRGGH ------DGVBCABTGDWGCGKRRCSR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Reverse Complement Reverse Complement DCCMCGBVYCVSVMCRVDGCHCYCWSACA GCCACGTGSD GCCMCGTGBVVSVMCRVDGCHCYCWSACA Direction: Forward Position #: 1 Overlap #: 10 Alignment: DCCMCGBVYCVSVMCRVDGCHCYCWSACA GCCACGTGSD------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 Combined Motif Original Motif Reverse Complement GCCMCGTGBVVSVMCRVDGCHCYCWSACA CKGGDTBDMMCTGG GCCMCSTGGDBBBMCCDGGCHCYCWSACA Direction: Forward Position #: 6 Overlap #: 14 Alignment: GCCMCGTGBVVSVMCRVDGCHCYCWSACA -----CKGGDTBDMMCTGG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Egr1 Combined Motif Reverse Complement Original Motif TGTSWGKGDGCCDGGRBBVHCCASGYGGC HGCGTGGGCGK TGTSWGBGKGSSHGKRBBVHCCASGYGGC Direction: Forward Position #: 5 Overlap #: 11 Alignment: TGTSWGKGDGCCDGGRBBVHCCASGYGGC ----HGCGTGGGCGK-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 37 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF MYCMAX Original Motif Reverse Complement BAACGTCCGC ACCACGTGSTM ACMACGTSCKC Direction: Forward Position #: 2 Overlap #: 10 Alignment: -BAACGTCCGC ACCACGTGSTM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Reverse Complement Reverse Complement GYGSACGTRGT BAGGYCABHBTGACCKHV VMGGACRTVBTGACCKHV Direction: Forward Position #: 1 Overlap #: 11 Alignment: GYGSACGTRGT------- BAGGYCABHBTGACCKHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Original Motif VHRGGTCABVAMGTCCRV VDBHMAGGTCACCCTGACCY VDBHHRGGTCABHMHGWCCDV Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---VHRGGTCABVAMGTCCRV VDBHMAGGTCACCCTGACCY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Reverse Complement Original Motif VDGGWCHRDBTGACCKHDBHV HWDAGHACRHHVTGTHCCHVMV VDGGHHHRGVWSACCBYGTHCCHVMV Direction: Forward Position #: 5 Overlap #: 17 Alignment: VDGGWCHRDBTGACCKHDBHV----- ----HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA Combined Motif Reverse Complement Reverse Complement VRVDGGHACMBGGTSWBCKHDHCCDV GTTGACCTTTGACCTTT VRVDGGHACMBGGTSWBSTTGACCTTTGACCTTT Direction: Forward Position #: 18 Overlap #: 9 Alignment: VRVDGGHACMBGGTSWBCKHDHCCDV-------- -----------------GTTGACCTTTGACCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif VRVDGGHACMBGGTSWBSTTGACCTTTGACCTTT TTCAGCACCATGGACAGCKCC BDCAGSACCABGGWSAGCKHSACCTTTGACCTTT Direction: Forward Position #: 1 Overlap #: 21 Alignment: VRVDGGHACMBGGTSWBSTTGACCTTTGACCTTT TTCAGCACCATGGACAGCKCC------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif BDCAGSACCABGGWSAGCKHSACCTTTGACCTTT DGVBCABTGDWGCGKRRCSR DRVDSVHBSADGSRBARCBDSACCTTTGACCTTT Direction: Forward Position #: 1 Overlap #: 20 Alignment: BDCAGSACCABGGWSAGCKHSACCTTTGACCTTT DGVBCABTGDWGCGKRRCSR-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Combined Motif Original Motif Original Motif DRVDSVHBSADGSRBARCBDSACCTTTGACCTTT VGCACGTGGH DRVVSCACGHGGBRBARCBDSACCTTTGACCTTT Direction: Forward Position #: 4 Overlap #: 10 Alignment: DRVDSVHBSADGSRBARCBDSACCTTTGACCTTT ---VGCACGTGGH--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Egr1 Combined Motif Original Motif Original Motif DRVVSCACGHGGBRBARCBDSACCTTTGACCTTT HGCGTGGGCGK DRVVSHRCGTGGGVGDRCBDSACCTTTGACCTTT Direction: Forward Position #: 6 Overlap #: 11 Alignment: DRVVSCACGHGGBRBARCBDSACCTTTGACCTTT -----HGCGTGGGCGK------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mycn Combined Motif Original Motif Reverse Complement DRVVSHRCGTGGGVGDRCBDSACCTTTGACCTTT GCCACGTGSD DGCCVCGYGBRGGVGDRCBDSACCTTTGACCTTT Direction: Forward Position #: 2 Overlap #: 10 Alignment: DRVVSHRCGTGGGVGDRCBDSACCTTTGACCTTT -GCCACGTGSD----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 38 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Mycn Original Motif Original Motif VGCACGTGGH HSCACGTGGC VSCACGTGGC Direction: Backward Position #: 1 Overlap #: 10 Alignment: VGCACGTGGH HSCACGTGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MYCMAX Reverse Complement Reverse Complement GCCACGTGSV ACCACGTGSTM DCCACGTGSDM Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCCACGTGSV- ACCACGTGSTM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif INSM1 Reverse Complement Original Motif RDSCACGTGGD TGYCAGGGGGCR KGBCASGKGGHR Direction: Forward Position #: 1 Overlap #: 11 Alignment: RDSCACGTGGD- TGYCAGGGGGCR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Reverse Complement Reverse Complement MDCCYCSTGBCR GCCYCMCCCD GCCYCHCCYRBCR Direction: Forward Position #: 2 Overlap #: 9 Alignment: -MDCCYCSTGBCR GCCYCMCCCD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Reverse Complement Original Motif KGBMKGGDGKGGC BBVGCCBVGGCCTV BBDGSCKSGGSSTGC Direction: Forward Position #: 3 Overlap #: 12 Alignment: --KGBMKGGDGKGGC BBVGCCBVGGCCTV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Original Motif Original Motif BBDGSCKSGGSSTGC GGGGCCCAAGGGGG GGGGSCCDVGGGGKGC Direction: Forward Position #: 2 Overlap #: 13 Alignment: -BBDGSCKSGGSSTGC GGGGCCCAAGGGGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfp423 Original Motif Original Motif GGGGSCCDVGGGGKGC GSMMCCYARGGKKKC GSVVCCYWRGGGKKVC Direction: Forward Position #: 1 Overlap #: 15 Alignment: GGGGSCCDVGGGGKGC GSMMCCYARGGKKKC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Reverse Complement Reverse Complement GVYYCCCKWKGGVVSC TGMYCTTTGBCCK TGVYCYYYGDBSGVVSC Direction: Forward Position #: 2 Overlap #: 12 Alignment: -GVYYCCCKWKGGVVSC TGMYCTTTGBCCK---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif GSVVCSBDCKKMGKBCA VDBHMAGGTCACCCTGACCY GSVVBSBVHGGHSDBCVTGACCY Direction: Forward Position #: 4 Overlap #: 14 Alignment: GSVVCSBDCKKMGKBCA------ ---VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Ar Reverse Complement Original Motif MGGTCABGBDSHCCHBBSBVVSC HWDAGHACRHHVTGTHCCHVMV HHDRKCACRBHSHSYHCBBBVVSC Direction: Forward Position #: 2 Overlap #: 21 Alignment: -MGGTCABGBDSHCCHBBSBVVSC HWDAGHACRHHVTGTHCCHVMV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 39 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MYCMAX RREB1 Reverse Complement Original Motif ACCACGTGSTM CCCCMAAMCAMCCMCMMMCV CMMMCVCMMACSWSCHMCCC Direction: Backward Position #: 7 Overlap #: 11 Alignment: ---ACCACGTGSTM------ CCCCMAAMCAMCCMCMMMCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Original Motif Original Motif CMMMCVCMMACSWSCHMCCC HWDAGHACRHHVTGTHCCHVMV CMMMHHMSMACVWVSYGYCCCHVMV Direction: Forward Position #: 4 Overlap #: 17 Alignment: CMMMCVCMMACSWSCHMCCC----- ---HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfp423 Combined Motif Reverse Complement Reverse Complement VRVDGGGMCMSVWVGTYSYHDRRRG GYRYCCMTKGGYRSC VRVDGGRYCCVDDGGTDSBHDRRRG Direction: Forward Position #: 5 Overlap #: 15 Alignment: VRVDGGGMCMSVWVGTYSYHDRRRG ----GYRYCCMTKGGYRSC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Reverse Complement Original Motif CMMMHHBSDACCDDVGGKMCCHVMV GGGGCCCAAGGGGG CMMMHGGGGMCCWAGGGGVCCHVMV Direction: Forward Position #: 6 Overlap #: 14 Alignment: CMMMHHBSDACCDDVGGKMCCHVMV -----GGGGCCCAAGGGGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif INSM1 Original Motif Original Motif CMMMHGGGGMCCWAGGGGVCCHVMV TGYCAGGGGGCR TSYMAGGGGGCVCWAGGGGVCCHVMV Direction: Forward Position #: 2 Overlap #: 11 Alignment: -CMMMHGGGGMCCWAGGGGVCCHVMV TGYCAGGGGGCR-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Reverse Complement VRVDGGVCCCCTWGVGCCCCCTRKSA GGYGCTGTCCATGGTGCTGAA GRHDSTSYCCMTKGTGCYSMVTRKSA Direction: Forward Position #: 1 Overlap #: 21 Alignment: VRVDGGVCCCCTWGVGCCCCCTRKSA GGYGCTGTCCATGGTGCTGAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Original Motif TSYMAVRSMGCACYARGGMSASHDMC VHRGGTCABDBTGMCCTB TSYMHDRGVKCACBDDGRMCHVHDMC Direction: Forward Position #: 5 Overlap #: 18 Alignment: TSYMAVRSMGCACYARGGMSASHDMC ----VHRGGTCABDBTGMCCTB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Reverse Complement GRHDVHGRMCDDBGTGRVCKDHRKSA MGGTCAGGGTGACCTRDBHV MGGTSAVGVTGRCCDDBBHGRVCKDHRKSA Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----GRHDVHGRMCDDBGTGRVCKDHRKSA MGGTCAGGGTGACCTRDBHV---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRRAR_DR5 Original Motif Original Motif MGGTSAVGVTGRCCDDBBHGRVCKDHRKSA RGKTCABVVRGAGGTCA AGGTCABVVDGASSTBABHGRVCKDHRKSA Direction: Forward Position #: 1 Overlap #: 17 Alignment: MGGTSAVGVTGRCCDDBBHGRVCKDHRKSA RGKTCABVVRGAGGTCA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Original Motif Reverse Complement AGGTCABVVDGASSTBABHGRVCKDHRKSA VAGGCCBBGGCVBB VRGKCMBBGDSVSSTBABHGRVCKDHRKSA Direction: Forward Position #: 1 Overlap #: 14 Alignment: AGGTCABVVDGASSTBABHGRVCKDHRKSA VAGGCCBBGGCVBB---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 40 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mycn Myc Reverse Complement Reverse Complement GCCACGTGSD DCCACGTGCV GCCACGTGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCCACGTGSD DCCACGTGCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MYCMAX Original Motif Reverse Complement GCCACGTGSV ACCACGTGSTM DCCACGTGSDM Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCCACGTGSV- ACCACGTGSTM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif INSM1 Reverse Complement Original Motif RDSCACGTGGD TGYCAGGGGGCR KGBCASGKGGHR Direction: Forward Position #: 1 Overlap #: 11 Alignment: RDSCACGTGGD- TGYCAGGGGGCR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Reverse Complement Reverse Complement MDCCYCSTGBCR GCCYCMCCCD GCCYCHCCYRBCR Direction: Forward Position #: 2 Overlap #: 9 Alignment: -MDCCYCSTGBCR GCCYCMCCCD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif GCCYCHCCYRBCR VDBHMAGGTCACCCTGACCY GCVBCHCVBGBCACCCTGACCY Direction: Forward Position #: 3 Overlap #: 11 Alignment: GCCYCHCCYRBCR--------- --VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Original Motif Original Motif GCVBCHCVBGBCACCCTGACCY BBVGCCBVGGCCTV GCVBCCBVGGCCWVCCTGACCY Direction: Forward Position #: 1 Overlap #: 14 Alignment: GCVBCHCVBGBCACCCTGACCY BBVGCCBVGGCCTV-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Original Motif Reverse Complement GCVBCCBVGGCCWVCCTGACCY CCCCCTTGGGCCCC CCCCCYHVGGCCHCCCTGACCY Direction: Forward Position #: 1 Overlap #: 14 Alignment: GCVBCCBVGGCCWVCCTGACCY CCCCCTTGGGCCCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Original Motif Reverse Complement CCCCCYHVGGCCHCCCTGACCY TGMYCTTTGBCCK BSMCCTTDGGCCBCCCTGACCY Direction: Forward Position #: 1 Overlap #: 13 Alignment: CCCCCYHVGGCCHCCCTGACCY TGMYCTTTGBCCK--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Reverse Complement BSMCCTTDGGCCBCCCTGACCY TGRCCTKTGHCCKAB TSVCCTTTGBCCBMBCTGACCY Direction: Forward Position #: 1 Overlap #: 15 Alignment: BSMCCTTDGGCCBCCCTGACCY TGRCCTKTGHCCKAB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Original Motif Original Motif TSVCCTTTGBCCBMBCTGACCY VHRGGTCABDBTGMCCTB HDRSSTYWGBBYGMCCTGACCY Direction: Forward Position #: 1 Overlap #: 18 Alignment: TSVCCTTTGBCCBMBCTGACCY VHRGGTCABDBTGMCCTB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 41 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MZF1_5-13 INSM1 Original Motif Original Motif BKAGGGGDAD TGYCAGGGGGCR BBAGGGGGHRTG Direction: Backward Position #: 1 Overlap #: 10 Alignment: --BKAGGGGDAD TGYCAGGGGGCR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif CAKHCCCCCTBV DGVBCABTGDWGCGKRRCSR CADDHCCMCTBVWGCGKRRCSR Direction: Forward Position #: 3 Overlap #: 10 Alignment: CAKHCCCCCTBV---------- --DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Reverse Complement Original Motif MSGKKRCGCWBBAGRGGDHDTG BTRGGDCARAGGKCA BTVGGKBAMRSKKCAGRGGDHDTG Direction: Forward Position #: 3 Overlap #: 13 Alignment: --MSGKKRCGCWBBAGRGGDHDTG BTRGGDCARAGGKCA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfp423 Original Motif Original Motif BTVGGKBAMRSKKCAGRGGDHDTG GSMMCCYARGGKKKC GBMVSCYAVGGKKBMGRGGDHDTG Direction: Forward Position #: 1 Overlap #: 15 Alignment: BTVGGKBAMRSKKCAGRGGDHDTG GSMMCCYARGGKKKC--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Original Motif Reverse Complement GBMVSCYAVGGKKBMGRGGDHDTG BGRRRGRGGRTGRTTYGGGG BGDVVGVBRRKGGTYHGGGGDHDTG Direction: Forward Position #: 2 Overlap #: 19 Alignment: -GBMVSCYAVGGKKBMGRGGDHDTG BGRRRGRGGRTGRTTYGGGG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Original Motif Original Motif BGDVVGVBRRKGGTYHGGGGDHDTG RGGBCAAAGKYCA VGDVVRRRGDBSRTYHGGGGDHDTG Direction: Forward Position #: 1 Overlap #: 13 Alignment: BGDVVGVBRRKGGTYHGGGGDHDTG RGGBCAAAGKYCA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRRAR_DR5 Combined Motif Reverse Complement Reverse Complement CADDHCCCCDMAKSVHCKKKVVHCV TGACCTCKVVBTGAYCK CATGHCCYCKMVDTGACCKKVVHCV Direction: Forward Position #: 3 Overlap #: 17 Alignment: CADDHCCCCDMAKSVHCKKKVVHCV --TGACCTCKVVBTGAYCK------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Ar Reverse Complement Reverse Complement VGDVVRRGGTCADBRRGMGGHCATG VRVDGGHACAVDDKGTHCTDWH VRVDDGDACARGKTGHHCDDDHGGHCATG Direction: Forward Position #: 5 Overlap #: 18 Alignment: ----VGDVVRRGGTCADBRRGMGGHCATG VRVDGGHACAVDDKGTHCTDWH------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif VRVDDGDACARGKTGHHCDDDHGGHCATG VDBHMAGGTCACCCTGACCY VDVBVRGRYMABBBKGHCBHDHGGHCATG Direction: Forward Position #: 1 Overlap #: 20 Alignment: VRVDDGDACARGKTGHHCDDDHGGHCATG VDBHMAGGTCACCCTGACCY--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 Combined Motif Reverse Complement Original Motif CATGHCCDHHBGHCRVBBTRKMCMVBVHV CCCCKCCCCC CATGHCCCCDBSYCVVBBTRKMCMVBVHV Direction: Forward Position #: 6 Overlap #: 10 Alignment: CATGHCCDHHBGHCRVBBTRKMCMVBVHV -----CCCCKCCCCC-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 42 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NFKB1 Tcfcp2l1 Original Motif Reverse Complement GGGGRTTCCCC CKGGDTBDMMCTGG TGGSGGGDTBBCCC Direction: Backward Position #: 4 Overlap #: 11 Alignment: GGGGRTTCCCC--- CKGGDTBDMMCTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Reverse Complement GGGBVADCCCSCCA GGYGCTGTCCATGGTGCTGAA GGYGCTGTCCATGGTGSKGAADCCCSCCA Direction: Forward Position #: 16 Overlap #: 6 Alignment: ---------------GGGBVADCCCSCCA GGYGCTGTCCATGGTGCTGAA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Reverse Complement Reverse Complement TGGSGGGDTTCRSCACCATGGACAGCKCC MSGKKRCGCWDCABTGBBCD MBGGBRSGCTTCAVYRCCMDGGACAGCKCC Direction: Forward Position #: 2 Overlap #: 19 Alignment: -TGGSGGGDTTCRSCACCATGGACAGCKCC MSGKKRCGCWDCABTGBBCD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Original Motif Reverse Complement MBGGBRSGCTTCAVYRCCMDGGACAGCKCC BGRRRGRGGRTGRTTYGGGG BGRRVGGGGRTGVTTYGGGRCCMDGGACAGCKCC Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----MBGGBRSGCTTCAVYRCCMDGGACAGCKCC BGRRRGRGGRTGRTTYGGGG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Original Motif Original Motif BGRRVGGGGRTGVTTYGGGRCCMDGGACAGCKCC DGGGYGKGGC DGGGHGGGGVTGVTTYGGGRCCMDGGACAGCKCC Direction: Forward Position #: 1 Overlap #: 10 Alignment: BGRRVGGGGRTGVTTYGGGRCCMDGGACAGCKCC DGGGYGKGGC------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Original Motif Original Motif DGGGHGGGGVTGVTTYGGGRCCMDGGACAGCKCC GGGGCCCAAGGGGG GDGGSCVDRGGGGGTTYGGGRCCMDGGACAGCKCC Direction: Forward Position #: 2 Overlap #: 13 Alignment: -DGGGHGGGGVTGVTTYGGGRCCMDGGACAGCKCC GGGGCCCAAGGGGG--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif SP1 Original Motif Reverse Complement GDGGSCVDRGGGGGTTYGGGRCCMDGGACAGCKCC GGGGGYGGGG GGGGGYGGGGGGGGTTYGGGRCCMDGGACAGCKCC Direction: Forward Position #: 1 Overlap #: 10 Alignment: GDGGSCVDRGGGGGTTYGGGRCCMDGGACAGCKCC GGGGGYGGGG------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 7 Original Motif Reverse Complement GGGGGYGGGGGGGGTTYGGGRCCMDGGACAGCKCC GGGGMGGG GGGGVGGGGGGGGGTTYGGGRCCMDGGACAGCKCC Direction: Forward Position #: 1 Overlap #: 8 Alignment: GGGGGYGGGGGGGGTTYGGGRCCMDGGACAGCKCC GGGGMGGG--------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfp423 Combined Motif Reverse Complement Reverse Complement GGYGCTGTCCDYGGMCCCKAACCCCCCCCCVCCCC GYRYCCMTKGGYRSC GGYGCWBYCCWBGGYVSCKAACCCCCCCCCVCCCC Direction: Forward Position #: 4 Overlap #: 15 Alignment: GGYGCTGTCCDYGGMCCCKAACCCCCCCCCVCCCC ---GYRYCCMTKGGYRSC----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MZF1_5-13 Reverse Complement Original Motif GGGGVGGGGGGGGGTTYGSVKCCVWGGKBWGCKCC BKAGGGGDAD GGRGGGGGRGGGGGTTYGSVKCCVWGGKBWGCKCC Direction: Forward Position #: 1 Overlap #: 10 Alignment: GGGGVGGGGGGGGGTTYGSVKCCVWGGKBWGCKCC BKAGGGGDAD------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 43 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA REST Reverse Complement Reverse Complement GTTGACCTTTGACCTTT GGYGCTGTCCATGGTGCTGAA GGYGYTGWCCTTKGWSCTKWA Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---GTTGACCTTTGACCTTT- GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Reverse Complement GGYGYTGWCCTTKGWSCTKWA TGRCCTKTGHCCKAB TGRSCKYTGHCCTWBGWSCTKWA Direction: Forward Position #: 3 Overlap #: 13 Alignment: --GGYGYTGWCCTTKGWSCTKWA TGRCCTKTGHCCKAB-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRAVDR Original Motif Reverse Complement TGRSCKYTGHCCTWBGWSCTKWA TGAACKCBWTGACCC TGWRCBCBHTGACCHWBGWSCTKWA Direction: Forward Position #: 3 Overlap #: 13 Alignment: --TGRSCKYTGHCCTWBGWSCTKWA TGAACKCBWTGACCC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Reverse Complement TGWRCBCBHTGACCHWBGWSCTKWA MGGTCAGGGTGACCTRDBHV HGDDCDVBBTGACCHDBGHVCTKWA Direction: Forward Position #: 1 Overlap #: 20 Alignment: TGWRCBCBHTGACCHWBGWSCTKWA MGGTCAGGGTGACCTRDBHV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 Combined Motif Original Motif Original Motif HGDDCDVBBTGACCHDBGHVCTKWA TKKTTTGTTTTTTT HGDDCDVBBTGACCHDBGHVCTKDWTTGTTTTTTT Direction: Forward Position #: 22 Overlap #: 4 Alignment: HGDDCDVBBTGACCHDBGHVCTKWA---------- ---------------------TKKTTTGTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif EWSR1-FLI1 Reverse Complement Original Motif AAAAAAACAAWDYAGVHCBDHGGTCABBVDGDHCH GGAAGGAAGGAAGGAAGG GGAARRAARSAAGGAAGGHCBDHGGTCABBVDGDHCH Direction: Forward Position #: 3 Overlap #: 16 Alignment: --AAAAAAACAAWDYAGVHCBDHGGTCABBVDGDHCH GGAAGGAAGGAAGGAAGG------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Ar Reverse Complement Original Motif HGDDCDVBBTGACCHDBGHCCTTCCTTSMTTMMTTCC HWDAGHACRHHVTGTHCCHVMV HWDDGDACABBVTGWCCYDBVHCCTTCCTTSMTTMMTTCC Direction: Forward Position #: 4 Overlap #: 19 Alignment: ---HGDDCDVBBTGACCHDBGHCCTTCCTTSMTTMMTTCC HWDAGHACRHHVTGTHCCHVMV------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif HWDDGDACABBVTGWCCYDBVHCCTTCCTTSMTTMMTTCC VHRGGTCABDBTGMCCTB HWDDGDACAHHRKGTCMBDBBVMCYTVCTTSMTTMMTTCC Direction: Forward Position #: 10 Overlap #: 18 Alignment: HWDDGDACABBVTGWCCYDBVHCCTTCCTTSMTTMMTTCC ---------VHRGGTCABDBTGMCCTB------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MIZF Original Motif Original Motif HWDDGDACAHHRKGTCMBDBBVMCYTVCTTSMTTMMTTCC BAACGTCCGC HWAMGTMCGCHRKGTCMBDBBVMCYTVCTTSMTTMMTTCC Direction: Forward Position #: 1 Overlap #: 10 Alignment: HWDDGDACAHHRKGTCMBDBBVMCYTVCTTSMTTMMTTCC BAACGTCCGC------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 44 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR4A2 NR1H2RXRA Original Motif Original Motif AAGGTCAC AAAGGTCAAAGGTCAAC AAAGGTCAMAGGTCAAC Direction: Forward Position #: 2 Overlap #: 8 Alignment: -AAGGTCAC-------- AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Reverse Complement GTTGACCTYTGACCTTT MGGTCAGGGTGACCTRDBHV MGGTCAGGKTGACCTBTGACCTTT Direction: Forward Position #: 8 Overlap #: 13 Alignment: -------GTTGACCTYTGACCTTT MGGTCAGGGTGACCTRDBHV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Reverse Complement Original Motif AAAGGTCAVAGGTCARCCTGACCY VHRGGTCABDBTGMCCTB MAAGGTCAVRGKKCMMYBTGACCY Direction: Forward Position #: 1 Overlap #: 18 Alignment: AAAGGTCAVAGGTCARCCTGACCY VHRGGTCABDBTGMCCTB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Original Motif Reverse Complement MAAGGTCAVRGKKCMMYBTGACCY VRVDGGHACAVDDKGTHCTDWH MAAGGBVAVRGDWCMVBBTGWCCTDWH Direction: Forward Position #: 6 Overlap #: 19 Alignment: MAAGGTCAVRGKKCMMYBTGACCY--- -----VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Original Motif MAAGGBVAVRGDWCMVBBTGWCCTDWH BTRGGDCARAGGKCA VDRGGBCAVRGKDCAVBBTGWCCTDWH Direction: Forward Position #: 1 Overlap #: 15 Alignment: MAAGGBVAVRGDWCMVBBTGWCCTDWH BTRGGDCARAGGKCA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Original Motif Reverse Complement VDRGGBCAVRGKDCAVBBTGWCCTDWH AKGYYCAAAGRTCA VVRGBBCAAAGRTCAVBBTGWCCTDWH Direction: Forward Position #: 2 Overlap #: 14 Alignment: VDRGGBCAVRGKDCAVBBTGWCCTDWH -AKGYYCAAAGRTCA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif VVRGBBCAAAGRTCAVBBTGWCCTDWH TTCAGCACCATGGACAGCKCC TBCAGBACMAHGGWCAGBDBSWCCTDWH Direction: Forward Position #: 2 Overlap #: 20 Alignment: -VVRGBBCAAAGRTCAVBBTGWCCTDWH TTCAGCACCATGGACAGCKCC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Original Motif HWDAGGWSVHBCTGWCCHTRGTBCTGVA BBVGCCBVGGCCTV HWDAGGHSVBSCTGGSCCTRGTBCTGVA Direction: Forward Position #: 7 Overlap #: 14 Alignment: HWDAGGWSVHBCTGWCCHTRGTBCTGVA ------BBVGCCBVGGCCTV-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Original Motif Reverse Complement HWDAGGHSVBSCTGGSCCTRGTBCTGVA BGRRRGRGGRTGRTTYGGGG BGRVDRRGGVTGDYYTGGGSCTRGTBCTGVA Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---HWDAGGHSVBSCTGGSCCTRGTBCTGVA BGRRRGRGGRTGRTTYGGGG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 Combined Motif Original Motif Reverse Complement BGRVDRRGGVTGDYYTGGGSCTRGTBCTGVA CKGGDTBDMMCTGG BGRVDRCKGGDKDBHHSKGGCTRGTBCTGVA Direction: Forward Position #: 7 Overlap #: 14 Alignment: BGRVDRRGGVTGDYYTGGGSCTRGTBCTGVA ------CKGGDTBDMMCTGG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 45 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 ESR1 Reverse Complement Reverse Complement MSGKKRCGCWDCABTGBBCD MGGTCAGGGTGACCTRDBHV MGGTBAVGCTKVMCTGBBMD Direction: Backward Position #: 1 Overlap #: 20 Alignment: MSGKKRCGCWDCABTGBBCD MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Reverse Complement Original Motif HRBBCAGRVYAGCVTBACCY HWDAGHACRHHVTGTHCCHVMV HDHVSARSRYHSYGTDMCVBMV Direction: Forward Position #: 1 Overlap #: 20 Alignment: HRBBCAGRVYAGCVTBACCY-- HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Reverse Complement Original Motif VRVVGRDACKSHKKSKTSBHDH VHRGGTCABDBTGMCCTB VDVGGDCACDBTGDSYTBBHDH Direction: Forward Position #: 1 Overlap #: 18 Alignment: VRVVGRDACKSHKKSKTSBHDH VHRGGTCABDBTGMCCTB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Original Motif VDVGGDCACDBTGDSYTBBHDH TTCAGCACCATGGACAGCKCC VDDSRGCACCVTGGMCWGBDBH Direction: Forward Position #: 2 Overlap #: 21 Alignment: VDVGGDCACDBTGDSYTBBHDH -TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRRAR_DR5 Combined Motif Original Motif Original Motif VDDSRGCACCVTGGMCWGBDBH RGKTCABVVRGAGGTCA VDDSRGBWCAHBGRVMDGTBAH Direction: Forward Position #: 5 Overlap #: 17 Alignment: VDDSRGCACCVTGGMCWGBDBH ----RGKTCABVVRGAGGTCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Original Motif Reverse Complement VDDSRGBWCAHBGRVMDGTBAH BGRRRGRGGRTGRTTYGGGG BGRVDGVRGGTSRYTBGRGGGTBAH Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---VDDSRGBWCAHBGRVMDGTBAH BGRRRGRGGRTGRTTYGGGG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Original Motif BGRVDGVRGGTSRYTBGRGGGTBAH BTRGGDCARAGGKCA BGRVDBBRGGDSADDGGDSRGTBAH Direction: Forward Position #: 6 Overlap #: 15 Alignment: BGRVDGVRGGTSRYTBGRGGGTBAH -----BTRGGDCARAGGKCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Reverse Complement Reverse Complement DTBACKSHCCDDTSDCCMVBHVMCB CCCCCTTGGGCCCC DTBACYCCCYWDKGCCCCVBHVMCB Direction: Forward Position #: 5 Overlap #: 14 Alignment: DTBACKSHCCDDTSDCCMVBHVMCB ----CCCCCTTGGGCCCC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Reverse Complement Original Motif BGRVDBBGGGGCYHWKGGGKGTBAH TGAMCTTTGMMCYT TGAMCBTKGRVCYBWKGGGKGTBAH Direction: Forward Position #: 1 Overlap #: 14 Alignment: BGRVDBBGGGGCYHWKGGGKGTBAH TGAMCTTTGMMCYT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Original Motif Reverse Complement TGAMCBTKGRVCYBWKGGGKGTBAH TGMYCTTTGBCCK TGAHCTTTGVVCBBWKGGGKGTBAH Direction: Forward Position #: 1 Overlap #: 13 Alignment: TGAMCBTKGRVCYBWKGGGKGTBAH TGMYCTTTGBCCK------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 46 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RORA_1 ESR1 Reverse Complement Reverse Complement TGACCTDVWT MGGTCAGGGTGACCTRDBHV VTGACCTDDDHMGGTCAGGG Direction: Backward Position #: 2 Overlap #: 10 Alignment: ---------TGACCTDVWT- MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRAVDR Combined Motif Original Motif Reverse Complement VTGACCTDDDHMGGTCAGGG TGAACKCBWTGACCC VTGAMCKVDHTVRSYCAGGG Direction: Forward Position #: 2 Overlap #: 15 Alignment: VTGACCTDDDHMGGTCAGGG -TGAACKCBWTGACCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA Combined Motif Reverse Complement Reverse Complement CCCTGKSKVAHHVRGYTCAV GTTGACCTTTGACCTTT CCCTGKSKVAHHVRGTTSACCTTTGACCTTT Direction: Forward Position #: 15 Overlap #: 6 Alignment: CCCTGKSKVAHHVRGYTCAV----------- --------------GTTGACCTTTGACCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRRAR_DR5 Combined Motif Original Motif Original Motif CCCTGKSKVAHHVRGTTSACCTTTGACCTTT RGKTCABVVRGAGGTCA CCVKGKCWVVDVVAGKTSACCTTTGACCTTT Direction: Forward Position #: 3 Overlap #: 17 Alignment: CCCTGKSKVAHHVRGTTSACCTTTGACCTTT --RGKTCABVVRGAGGTCA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Reverse Complement Reverse Complement AAAGGTCAAAGGTSARCTVBHBVWGRCYVGG AKGYYCAAAGRTCA AARGGTCAAAGRTCARCTVBHBVWGRCYVGG Direction: Forward Position #: 2 Overlap #: 14 Alignment: AAAGGTCAAAGGTSARCTVBHBVWGRCYVGG -AKGYYCAAAGRTCA---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Original Motif AARGGTCAAAGRTCARCTVBHBVWGRCYVGG BTRGGDCARAGGKCA VDRGGKCAAAGGTCARCTVBHBVWGRCYVGG Direction: Forward Position #: 1 Overlap #: 15 Alignment: AARGGTCAAAGRTCARCTVBHBVWGRCYVGG BTRGGDCARAGGKCA---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif VDRGGKCAAAGGTCARCTVBHBVWGRCYVGG TTCAGCACCATGGACAGCKCC THCAGSACMAWGGWCAGCKCBHBVWGRCYVGG Direction: Forward Position #: 2 Overlap #: 20 Alignment: -VDRGGKCAAAGGTCARCTVBHBVWGRCYVGG TTCAGCACCATGGACAGCKCC----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Reverse Complement Reverse Complement CCVKGKCWVVDBGRGCTGWCCWTYGTSCTGHA TGMYCTTTGBCCK TGVYCTKTSDHCDBGRGCTGWCCWTYGTSCTGHA Direction: Forward Position #: 3 Overlap #: 11 Alignment: --CCVKGKCWVVDBGRGCTGWCCWTYGTSCTGHA TGMYCTTTGBCCK--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Ar Reverse Complement Original Motif THCAGSACMAWGGWCAGCKCBHGDDSARAGKVCA HWDAGHACRHHVTGTHCCHVMV HWDDGARCACMVWGKWCMVVHVBHGDDSARAGKVCA Direction: Forward Position #: 3 Overlap #: 20 Alignment: --THCAGSACMAWGGWCAGCKCBHGDDSARAGKVCA HWDAGHACRHHVTGTHCCHVMV-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Original Motif Original Motif HWDDGARCACMVWGKWCMVVHVBHGDDSARAGKVCA CCCCMAAMCAMCCMCMMMCV CCCCMAAHCAMCMCCMHSBHCMVVHVBHGDDSARAGKVCA Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----HWDDGARCACMVWGKWCMVVHVBHGDDSARAGKVCA CCCCMAAMCAMCCMCMMMCV-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 47 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRRAR_DR5 ESR1 Original Motif Reverse Complement RGKTCABVVRGAGGTCA MGGTCAGGGTGACCTRDBHV DSRKSRTGRMCDGGBCAMGG Direction: Backward Position #: 1 Overlap #: 17 Alignment: ---RGKTCABVVRGAGGTCA MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Reverse Complement CCYTGVCCDGRKCAKSRKSD BAGGYCABHBTGACCKHV CCYTBABSHSABCVTGABCKHV Direction: Forward Position #: 5 Overlap #: 16 Alignment: CCYTGVCCDGRKCAKSRKSD-- ----BAGGYCABHBTGACCKHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Reverse Complement CCYTBABSHSABCVTGABCKHV MSGKKRCGCWDCABTGBBCD CCBKBACGCHDBVVTGHBCDHV Direction: Forward Position #: 1 Overlap #: 20 Alignment: CCYTBABSHSABCVTGABCKHV MSGKKRCGCWDCABTGBBCD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Original Motif Reverse Complement CCBKBACGCHDBVVTGHBCDHV VRVDGGHACAVDDKGTHCTDWH CCBKBRVVBGHHCVBGDBSTHCTDWH Direction: Forward Position #: 5 Overlap #: 18 Alignment: CCBKBACGCHDBVVTGHBCDHV---- ----VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Original Motif CCBKBRVVBGHHCVBGDBSTHCTDWH BTRGGDCARAGGKCA CCBKBVBDGGDVMAAGGKSWHCTDWH Direction: Forward Position #: 6 Overlap #: 15 Alignment: CCBKBRVVBGHHCVBGDBSTHCTDWH -----BTRGGDCARAGGKCA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRAVDR Combined Motif Original Motif Original Motif CCBKBVBDGGDVMAAGGKSWHCTDWH GGGTCAWBGRGTTCA TDWHRGGTCAHVGRGTTYVCCBKBVB Direction: Backward Position #: 5 Overlap #: 15 Alignment: CCBKBVBDGGDVMAAGGKSWHCTDWH -------GGGTCAWBGRGTTCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Original Motif Reverse Complement TDWHRGGTCAHVGRGTTYVCCBKBVB AKGYYCAAAGRTCA TDWHRGBTCAAAGRKCWYVCCBKBVB Direction: Forward Position #: 4 Overlap #: 14 Alignment: TDWHRGGTCAHVGRGTTYVCCBKBVB ---AKGYYCAAAGRTCA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Original Motif Original Motif TDWHRGBTCAAAGRKCWYVCCBKBVB GGGGCCCAAGGGGG TDGVGGSYCAARGGKSWYVCCBKBVB Direction: Forward Position #: 3 Overlap #: 14 Alignment: TDWHRGBTCAAAGRKCWYVCCBKBVB --GGGGCCCAAGGGGG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Original Motif Original Motif TDGVGGSYCAARGGKSWYVCCBKBVB RGGBCAAAGKYCA TDGVGGGBBMARRGKBHHVCCBKBVB Direction: Forward Position #: 6 Overlap #: 13 Alignment: TDGVGGSYCAARGGKSWYVCCBKBVB -----RGGBCAAAGKYCA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Original Motif Original Motif TDGVGGGBBMARRGKBHHVCCBKBVB CCCCMAAMCAMCCMCMMMCV TDGVGVCCCMAAVSRVCMMCCVHSVB Direction: Forward Position #: 6 Overlap #: 20 Alignment: TDGVGGGBBMARRGKBHHVCCBKBVB -----CCCCMAAMCAMCCMCMMMCV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 48 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 Ar Original Motif Original Motif CCAGYYHVADCCRG HWDAGHACRHHVTGTHCCHVMV HWDAGHMCAGYBYGWDCCDGMV Direction: Forward Position #: 7 Overlap #: 14 Alignment: ------CCAGYYHVADCCRG-- HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif VRCDGGDWCMBKCTGRHCTDWH VDBHMAGGTCACCCTGACCY VDCBVRKDBCABCBKGHCYTWH Direction: Forward Position #: 1 Overlap #: 20 Alignment: VRCDGGDWCMBKCTGRHCTDWH VDBHMAGGTCACCCTGACCY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Original Motif Reverse Complement VDCBVRKDBCABCBKGHCYTWH VAGGCCBBGGCVBB VAGGCCBBGBCVBBBKGHCYTWH Direction: Forward Position #: 2 Overlap #: 13 Alignment: -VDCBVRKDBCABCBKGHCYTWH VAGGCCBBGGCVBB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Reverse Complement Reverse Complement HWAMGHCRVBBBGBCBBGGCCTV BGRRRGRGGRTGRTTYGGGG HHVVGDSRRGVTGVYYYGGSVTV Direction: Forward Position #: 2 Overlap #: 20 Alignment: HWAMGHCRVBBBGBCBBGGCCTV -BGRRRGRGGRTGRTTYGGGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Reverse Complement Reverse Complement VAVSCCMMMVCAVCMMSDCBVHH CCCCCTTGGGCCCC VACCCCCHWVSRCCCCSDCBVHH Direction: Forward Position #: 3 Overlap #: 14 Alignment: VAVSCCMMMVCAVCMMSDCBVHH --CCCCCTTGGGCCCC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Original Motif HHVVGDSGGGGMSVWHGGGGGTV VHRGGTCABDBTGMCCTB HHVVVDRGGKSASVDTGVSSBBV Direction: Forward Position #: 5 Overlap #: 18 Alignment: HHVVGDSGGGGMSVWHGGGGGTV ----VHRGGTCABDBTGMCCTB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Reverse Complement Original Motif VVVSSVCADVSTSYCCMDVBVHH BTRGGDCARAGGKCA VDRGGVCADAGKBYMCMDVBVHH Direction: Forward Position #: 1 Overlap #: 15 Alignment: VVVSSVCADVSTSYCCMDVBVHH BTRGGDCARAGGKCA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Reverse Complement HHVVVDRGYKBYCTDTGVCCKDV MSGKKRCGCWDCABTGBBCD HHVVVVGGBRCBCTDYRVBVBDVD Direction: Forward Position #: 5 Overlap #: 19 Alignment: HHVVVDRGYKBYCTDTGVCCKDV- ----MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRRAR_DR5 Reverse Complement Original Motif HVDVVBVMMDAGBGMVCCVVBVHH RGKTCABVVRGAGGTCA RGGTCABVVVVAGBKCACCVVBVHH Direction: Forward Position #: 2 Overlap #: 16 Alignment: -HVDVVBVMMDAGBGMVCCVVBVHH RGKTCABVVRGAGGTCA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif RGGTCABVVVVAGBKCACCVVBVHH TTCAGCACCATGGACAGCKCC TTCAGSAYCABGGASAGBKCMCCVVBVHH Direction: Forward Position #: 5 Overlap #: 17 Alignment: ----RGGTCABVVVVAGBKCACCVVBVHH TTCAGCACCATGGACAGCKCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 06-18-2018 13:28:24 Runtime: 667.125 seconds MOTIFSIM is written by Ngoc Tam L. 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