**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 2 Number of top significant motifs: 10 Number of best matches: 5 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Motif tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # W-ChIPMotifs_DM230.txt 11 1 RSAT_peak-motifs_DM230.txt 10 2 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ************************************************************ Combined Motifs for Top Global Significant Motif ID 1 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW1 sSGTCACGTGACSs Original Motif Original Motif GTCGCG SGGTCACGTGACCS SGGTCRCGTGACCS Direction: Forward Position #: 3 Overlap #: 6 Alignment: --GTCGCG------ SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Reverse Complement Reverse Complement SGGTCACGKGACCS BBGGGGCGGGGCVD VSGKSRCGGGRCSB Direction: Forward Position #: 1 Overlap #: 14 Alignment: SGGTCACGKGACCS BBGGGGCGGGGCVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Original Motif Reverse Complement VSGKSRCGGGRCSB BBGGGGCGGGGCGGB BBGGGGCGGGGCGKSRCGGGRCSB Direction: Forward Position #: 11 Overlap #: 5 Alignment: ----------VSGKSRCGGGRCSB BBGGGGCGGGGCGGB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc Combined Motif Original Motif Reverse Complement BBGGGGCGGGGCGKSRCGGGRCSB GBTGCAGGTGB BBGGKGCRGGKSBKSRCGGGRCSB Direction: Forward Position #: 3 Overlap #: 11 Alignment: BBGGGGCGGGGCGKSRCGGGRCSB --GBTGCAGGTGB----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 21 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww TFM11 Reverse Complement Reverse Complement DHTATTTACBD TWVHWWWYTTTYTTTTTHTTTVWBH TWVHWWWYTTTYTTTTTATTTAHBH Direction: Forward Position #: 15 Overlap #: 11 Alignment: --------------DHTATTTACBD TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Original Motif TWVHWWWYTTTYTTTTTATTTAHBH WTKTTTTTHWTTTTTTBT TWVHWWWYTTTYTTTDTWTTTVHTTTTTTBT Direction: Forward Position #: 14 Overlap #: 12 Alignment: TWVHWWWYTTTYTTTTTATTTAHBH------ -------------WTKTTTTTHWTTTTTTBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif TWVHWWWYTTTYTTTDTWTTTVHTTTTTTBT WWHTTTTTCABAAWTTWA TWVHWWWYTTTYTTTDTWTTTWTTTYWTWVWTTWA Direction: Forward Position #: 18 Overlap #: 14 Alignment: TWVHWWWYTTTYTTTDTWTTTVHTTTTTTBT---- -----------------WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Reverse Complement TWVHWWWYTTTYTTTDTWTTTWTTTYWTWVWTTWA WAHHTVTTYKAAAAWTTRAT TWVHWWWYTTTYTTTDTWTTTWHTTHTTWDWWWWWTTRAT Direction: Forward Position #: 21 Overlap #: 15 Alignment: TWVHWWWYTTTYTTTDTWTTTWTTTYWTWVWTTWA----- --------------------WAHHTVTTYKAAAAWTTRAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif TWVHWWWYTTTYTTTDTWTTTWHTTHTTWDWWWWWTTRAT CYYCBBCYYYTCCHCCTYYY TWVHWWWYTTTCYBHBTYTYTHYYTBYTHBHWWWWTTRAT Direction: Forward Position #: 12 Overlap #: 20 Alignment: TWVHWWWYTTTYTTTDTWTTTWHTTHTTWDWWWWWTTRAT -----------CYYCBBCYYYTCCHCCTYYY--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 3 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW3 csGCCCCGCCCCsc Original Motif Original Motif CGGCYBCGCG HVGCCCCGCCCCBB CGGCCCCGCSCCBB Direction: Backward Position #: 5 Overlap #: 10 Alignment: CGGCYBCGCG---- HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Original Motif Reverse Complement CGGCCCCGCSCCBB BBGGGGCGGGGCGGB BBGGGGCGGGGCGGCCCCGCSCCBB Direction: Forward Position #: 12 Overlap #: 4 Alignment: -----------CGGCCCCGCSCCBB BBGGGGCGGGGCGGB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Reverse Complement Original Motif BBGGSGCGGGGCCGCCCCGCCCCBB SGGTCACGTGACCS BSGKSRCGKGVCCGCCCCGCCCCBB Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBGGSGCGGGGCCGCCCCGCCCCBB SGGTCACGTGACCS----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Original Motif Reverse Complement BSGKSRCGKGVCCGCCCCGCCCCBB GBTGCAGGTGB BSKGCASGTGVCCGCCCCGCCCCBB Direction: Forward Position #: 1 Overlap #: 11 Alignment: BSGKSRCGKGVCCGCCCCGCCCCBB GBTGCAGGTGB-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kCAGCCAATmr Original Motif Reverse Complement BSKGCASGTGVCCGCCCCGCCCCBB MBATTGGCTGH MBATTGGCTGCASGTGVCCGCCCCGCCCCBB Direction: Forward Position #: 7 Overlap #: 5 Alignment: ------BSKGCASGTGVCCGCCCCGCCCCBB MBATTGGCTGH-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 12 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc TFM12 Original Motif Original Motif HVGCCCCGCCCCBB CYYCBBCYYYTCCHCCTYYY CYYCVGCCCCGCCCCBHYYY Direction: Backward Position #: 4 Overlap #: 14 Alignment: ---HVGCCCCGCCCCBB--- CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Original Motif KKKHBGGGGCGGGGCVGKMG RGRGGAGRRGGHGGDG KKGVVGGRGVGGGGSGDGMG Direction: Forward Position #: 3 Overlap #: 16 Alignment: KKKHBGGGGCGGGGCVGKMG --RGRGGAGRRGGHGGDG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Reverse Complement CYCHCSCCCCVCMCCVVCYY GCVCCGCCMCCYCC CYCVCVCCSCCCCCCCCCYY Direction: Forward Position #: 4 Overlap #: 14 Alignment: CYCHCSCCCCVCMCCVVCYY ---GCVCCGCCMCCYCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Original Motif Original Motif CYCVCVCCSCCCCCCCCCYY CGGVGCCGCVGC CYCVCGSCGCCSCVBCCCYY Direction: Forward Position #: 5 Overlap #: 12 Alignment: CYCVCVCCSCCCCCCCCCYY ----CGGVGCCGCVGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW3 Combined Motif Original Motif Reverse Complement CYCVCGSCGCCSCVBCCCYY CGCGBMGCCG CYCVCSGCGCMGCCGCCCYY Direction: Forward Position #: 6 Overlap #: 10 Alignment: CYCVCGSCGCCSCVBCCCYY -----CGCGBMGCCG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 16 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc TFF11 Reverse Complement Original Motif GBTGCAGGTGB GGMGGRGGCGGVGC GSTGSAGGYGGVGC Direction: Backward Position #: 4 Overlap #: 11 Alignment: GBTGCAGGTGB--- GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Reverse Complement Original Motif GCVCCMCCTSCASC CYYCBBCYYYTCCHCCTYYY CYYCBBCYYYTCCHSCHBCMCCTSCASC Direction: Forward Position #: 15 Overlap #: 6 Alignment: --------------GCVCCMCCTSCASC CYYCBBCYYYTCCHCCTYYY-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Reverse Complement CYYCBBCYYYTCCHSCHBCMCCTSCASC CHCCBCCKMCTCCKCM CYYCBBCYYYTCCCVCMBCCBCBKCMBCM Direction: Forward Position #: 14 Overlap #: 15 Alignment: CYYCBBCYYYTCCHSCHBCMCCTSCASC- -------------CHCCBCCKMCTCCKCM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Reverse Complement Original Motif RGVRGYVGBGGBRGVGGGAKKMGBBGKMG CGGVGCCGCVGC RGVRGYVGBGGBRGVGGGVGGMGCCGSVGC Direction: Forward Position #: 19 Overlap #: 11 Alignment: RGVRGYVGBGGBRGVGGGAKKMGBBGKMG- ------------------CGGVGCCGCVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW3 Combined Motif Reverse Complement Original Motif GCBSCGGCYCCVCCCVCMBCCBCBKCMBCM CGGCYBCGCG GCBSCGGCYCCGSCYBCVCSCBCBKCMBCM Direction: Forward Position #: 11 Overlap #: 10 Alignment: GCBSCGGCYCCVCCCVCMBCCBCBKCMBCM ----------CGGCYBCGCG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 19 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wsTACwGTAsw TFM3 Reverse Complement Original Motif DBTACWGTAVH WWHTTTTTCABAAWTTWA WWHTHTAYHRTARHTTWA Direction: Backward Position #: 5 Overlap #: 11 Alignment: ---DBTACWGTAVH---- WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Original Motif Reverse Complement WWHTHTAYHRTARHTTWA WAHHTVTTYKAAAAWTTRAT WAHHTVTTYKAAAAWTWWATHTAYHRTARHTTWA Direction: Forward Position #: 17 Overlap #: 4 Alignment: ----------------WWHTHTAYHRTARHTTWA WAHHTVTTYKAAAAWTTRAT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Original Motif WAHHTVTTYKAAAAWTWWATHTAYHRTARHTTWA HDWVAAAHAAAAAMAAAMWWWHBWA WAHHTVTTYKAAAAWTWWHHWBAMWDWAADHHAAAMWWWHBWA Direction: Forward Position #: 19 Overlap #: 16 Alignment: WAHHTVTTYKAAAAWTWWATHTAYHRTARHTTWA--------- ------------------HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Reverse Complement WAHHTVTTYKAAAAWTWWHHWBAMWDWAADHHAAAMWWWHBWA ABAAAAAAWHAAAAARAW WAHHTVTTYKAAAAWTWWHHWBAMWDWDAAAWAAAHAAAADDAW Direction: Forward Position #: 27 Overlap #: 17 Alignment: WAHHTVTTYKAAAAWTWWHHWBAMWDWAADHHAAAMWWWHBWA- --------------------------ABAAAAAAWHAAAAARAW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Reverse Complement Original Motif WTDDTTTTHTTTWTTTDWDWYTVWHHWWAWTTTTYMAABAHHTW CYYCBBCYYYTCCHCCTYYY CYYCBBCYYYTCCHHYDHYYTTHTTTWTTTDWDWYTVWHHWWAWTTTTYMAABAHHTW Direction: Forward Position #: 15 Overlap #: 6 Alignment: --------------WTDDTTTTHTTTWTTTDWDWYTVWHHWWAWTTTTYMAABAHHTW CYYCBBCYYYTCCHCCTYYY-------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 17 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw TFM1 Original Motif Reverse Complement HDAAATAATADD ABAAAAAAWHAAAAARAW ABAAAAAAAHAWAAWAWW Direction: Forward Position #: 7 Overlap #: 12 Alignment: ------HDAAATAATADD ABAAAAAAWHAAAAARAW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Original Motif ABAAAAAAAHAWAAWAWW HDWVAAAHAAAAAMAAAMWWWHBWA ABAAAAHHWVAAAAWAADAMAAAMWWWHBWA Direction: Forward Position #: 7 Overlap #: 12 Alignment: ABAAAAAAAHAWAAWAWW------------- ------HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif ABAAAAHHWVAAAAWAADAMAAAMWWWHBWA ATKAAWTTTTRMAABAHHTW ABAAAAHHWVAAAAWAAAWDAAAWTWWDHAABAHHTW Direction: Forward Position #: 18 Overlap #: 14 Alignment: ABAAAAHHWVAAAAWAADAMAAAMWWWHBWA------ -----------------ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif WAHHTVTTHDWWAWTTTDWTTTWTTTTBWHHTTTTBT WWHTTTTTCABAAWTTWA WAHHTVTTHDWWAWTTTDWTTTWWTTTTTTYWTWWHTTWA Direction: Forward Position #: 23 Overlap #: 15 Alignment: WAHHTVTTHDWWAWTTTDWTTTWTTTTBWHHTTTTBT--- ----------------------WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Original Motif Original Motif WAHHTVTTHDWWAWTTTDWTTTWWTTTTTTYWTWWHTTWA CYYCBBCYYYTCCHCCTYYY CYYCBBCYYYTCCHCCWHYYTVTTHDWWAWTTTDWTTTWWTTTTTTYWTWWHTTWA Direction: Forward Position #: 17 Overlap #: 4 Alignment: ----------------WAHHTVTTHDWWAWTTTDWTTTWWTTTTTTYWTWWHTTWA CYYCBBCYYYTCCHCCTYYY------------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 13 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw TFM11 Reverse Complement Reverse Complement WHTATTATTTDH TWVHWWWYTTTYTTTTTHTTTVWBH TWVHWWWYTTTHHTWTTWTTTVWBH Direction: Backward Position #: 3 Overlap #: 12 Alignment: -----------WHTATTATTTDH-- TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Reverse Complement HDWBAAAWAAWAHHAAAMWWWHBWA ABAAAAAAWHAAAAARAW HDWBAAAWAAWAHAAAAAWAAWBAAAAARAW Direction: Forward Position #: 14 Overlap #: 12 Alignment: HDWBAAAWAAWAHHAAAMWWWHBWA------ -------------ABAAAAAAWHAAAAARAW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Original Motif WTKTTTTTVWTTWTTTTTHTWTTWTTTVWBH ATKAAWTTTTRMAABAHHTW WTKTTTTTVWTTWTTTTWTTWWWWTTTRHAMBAHHTW Direction: Forward Position #: 18 Overlap #: 14 Alignment: WTKTTTTTVWTTWTTTTTHTWTTWTTTVWBH------ -----------------ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Reverse Complement WAHHTVYTHKAAAWWWWAAWAAAAWAAWBAAAAARAW TWAAWTTVTGAAAAAHWW WAHHTVYTHKAAAWWWWAAWAAWAAAWTTVWRAARAAHWW Direction: Forward Position #: 23 Overlap #: 15 Alignment: WAHHTVYTHKAAAWWWWAAWAAAAWAAWBAAAAARAW--- ----------------------TWAAWTTVTGAAAAAHWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Reverse Complement Original Motif WWHTTKTTKWBAAWTTTWTTWTTWWWWTTTRHAMBAHHTW CYYCBBCYYYTCCHCCTYYY CYYCBBCWHHTYYTYBWBHHWTTTWTTWTTWWWWTTTRHAMBAHHTW Direction: Forward Position #: 8 Overlap #: 13 Alignment: -------WWHTTKTTKWBAAWTTTWTTWTTWWWWTTTRHAMBAHHTW CYYCBBCYYYTCCHCCTYYY--------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 20 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dhACATTCTkh TFM3 Reverse Complement Original Motif HCAGAATGTHD WWHTTTTTCABAAWTTWA WHAKWWTKYWDAAWTTWA Direction: Backward Position #: 8 Overlap #: 11 Alignment: HCAGAATGTHD------- WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Reverse Complement WHAKWWTKYWDAAWTTWA TWVHWWWYTTTYTTTTTHTTTVWBH WHAKWWTDHWDAAHTTTHTTTTTHTTTVWBH Direction: Forward Position #: 7 Overlap #: 12 Alignment: WHAKWWTKYWDAAWTTWA------------- ------TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif WHAKWWTDHWDAAHTTTHTTTTTHTTTVWBH ATKAAWTTTTRMAABAHHTW WHAKWWTDHWDAAHTTTATKWWWWTTTVWAMBAHHTW Direction: Forward Position #: 18 Overlap #: 14 Alignment: WHAKWWTDHWDAAHTTTHTTTTTHTTTVWBH------ -----------------ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Original Motif WHAKWWTDHWDAAHTTTATKWWWWTTTVWAMBAHHTW WTKTTTTTHWTTTTTTBT WHAKWWTDHWDAAHTTTATKWWWTTTTTDDHTWWHTWTBT Direction: Forward Position #: 23 Overlap #: 15 Alignment: WHAKWWTDHWDAAHTTTATKWWWWTTTVWAMBAHHTW--- ----------------------WTKTTTTTHWTTTTTTBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif WHAKWWTDHWDAAHTTTATKWWWTTTTTDDHTWWHTWTBT CYYCBBCYYYTCCHCCTYYY WHAKWWYHYHDDMHYTTMYBHHWHYYTTDDHTWWHTWTBT Direction: Forward Position #: 7 Overlap #: 20 Alignment: WHAKWWTDHWDAAHTTTATKWWWTTTTTDDHTWWHTWTBT ------CYYCBBCYYYTCCHCCTYYY-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 2 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW2 csGCCCCGCCCCsc Original Motif Reverse Complement SCGCGCGG BBGGGGCGGGGCVD BBSGSGCGGGGCVD Direction: Forward Position #: 2 Overlap #: 8 Alignment: -SCGCGCGG----- BBGGGGCGGGGCVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Original Motif Reverse Complement BBSGSGCGGGGCVD BBGGGGCGGGGCGGB BBGGGGCGGGGCSSGSGCGGGGCVD Direction: Forward Position #: 12 Overlap #: 4 Alignment: -----------BBSGSGCGGGGCVD BBGGGGCGGGGCGGB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Reverse Complement Reverse Complement HVGCCCCGCSCSSGCCCCGCCCCBB SGGTCACGTGACCS VSGYCMCGYGMCCBCCCCGCCCCBB Direction: Forward Position #: 1 Overlap #: 14 Alignment: HVGCCCCGCSCSSGCCCCGCCCCBB SGGTCACGTGACCS----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Original Motif Reverse Complement VSGYCMCGYGMCCBCCCCGCCCCBB GBTGCAGGTGB VSKGCASGTGHCCBCCCCGCCCCBB Direction: Forward Position #: 1 Overlap #: 11 Alignment: VSGYCMCGYGMCCBCCCCGCCCCBB GBTGCAGGTGB-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 06-18-2018 21:47:01 Runtime: 633.592 seconds MOTIFSIM is written by Ngoc Tam L. 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