**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 2 Number of top significant motifs: 10 Number of best matches: 5 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Motif tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # W-ChIPMotifs_DM230.txt 11 1 RSAT_peak-motifs_DM230.txt 10 2 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ****************************************************************** Top 10 Significant Motifs - Global Matching (Highest to Lowest) ****************************************************************** Dataset #: 1 Motif ID: 1 Motif name: TFW1 Consensus sequence (original motif): GTCGCG Consensus sequence (reverse complement motif): CGCGAC *************************************************************** Best Matches for Top Significant Motif ID 1 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 18 sSGTCACGTGACSs Original Motif Original Motif Forward 3 6 0.0375102 Consensus sequence (original motif): SGGTCACGTGACCS Consensus sequence (reverse complement motif): SGGTCACGTGACCS Alignment: SGGTCACGTGACCS --GTCGCG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 12 csGCCCCGCCCCsc Original Motif Original Motif Backward 7 6 0.0539 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: HVGCCCCGCCCCBB --GTCGCG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 14 cccGCCCCGCCCCsb Reverse Complement Original Motif Backward 3 6 0.0558733 Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB Alignment: BCCGCCCCGCCCCBB -------CGCGAC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 16 kcACCTGCAgc Reverse Complement Original Motif Forward 6 6 0.0980422 Consensus sequence (original motif): BCACCTGCABC Consensus sequence (reverse complement motif): GBTGCAGGTGB Alignment: BCACCTGCABC -----CGCGAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 20 dhACATTCTkh Original Motif Reverse Complement Forward 8 4 1.09467 Consensus sequence (original motif): DHACATTCTGH Consensus sequence (reverse complement motif): HCAGAATGTHD Alignment: HCAGAATGTHD-- -------GTCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 21 Motif name: wbgTAAATAww Consensus sequence (original motif): DBGTAAATAHD Consensus sequence (reverse complement motif): DHTATTTACBD *************************************************************** Best Matches for Top Significant Motif ID 21 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 11 TFM11 Reverse Complement Reverse Complement Forward 15 11 0.0192768 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: TWVHWWWYTTTYTTTTTHTTTVWBH --------------DHTATTTACBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 TFM1 Reverse Complement Original Motif Forward 1 11 0.0283217 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW Alignment: WTKTTTTTHWTTTTTTBT DHTATTTACBD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 TFM3 Reverse Complement Original Motif Backward 2 11 0.0308097 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW Alignment: WWHTTTTTCABAAWTTWA ------DHTATTTACBD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 TFM13 Original Motif Original Motif Backward 3 11 0.0333874 Consensus sequence (original motif): ATKAAWTTTTRMAABAHHTW Consensus sequence (reverse complement motif): WAHHTVTTYKAAAAWTTRAT Alignment: ATKAAWTTTTRMAABAHHTW -------DBGTAAATAHD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 TFM12 Reverse Complement Reverse Complement Backward 14 7 2.0544 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: ----KKKAGGDGGAKKMGBBGKMG DHTATTTACBD------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 3 Motif name: TFW3 Consensus sequence (original motif): CGGCYBCGCG Consensus sequence (reverse complement motif): CGCGBMGCCG *************************************************************** Best Matches for Top Significant Motif ID 3 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 12 csGCCCCGCCCCsc Original Motif Original Motif Backward 5 10 0.0718771 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: HVGCCCCGCCCCBB CGGCYBCGCG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 14 cccGCCCCGCCCCsb Original Motif Original Motif Backward 5 10 0.0719604 Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB Alignment: BCCGCCCCGCCCCBB -CGGCYBCGCG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 18 sSGTCACGTGACSs Reverse Complement Reverse Complement Forward 5 10 0.0895189 Consensus sequence (original motif): SGGTCACGTGACCS Consensus sequence (reverse complement motif): SGGTCACGTGACCS Alignment: SGGTCACGTGACCS ----CGCGBMGCCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 16 kcACCTGCAgc Reverse Complement Original Motif Forward 4 8 1.10343 Consensus sequence (original motif): BCACCTGCABC Consensus sequence (reverse complement motif): GBTGCAGGTGB Alignment: BCACCTGCABC-- ---CGCGBMGCCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 15 kCAGCCAATmr Reverse Complement Original Motif Backward 5 7 1.57732 Consensus sequence (original motif): DCAGCCAATVR Consensus sequence (reverse complement motif): MBATTGGCTGH Alignment: ---DCAGCCAATVR CGCGBMGCCG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 12 Motif name: csGCCCCGCCCCsc Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD *************************************************************** Best Matches for Top Significant Motif ID 12 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 TFM12 Original Motif Original Motif Backward 4 14 0.0777991 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: CYYCBBCYYYTCCHCCTYYY ---HVGCCCCGCCCCBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 6 TFM2 Original Motif Reverse Complement Backward 3 14 0.0880609 Consensus sequence (original motif): RGRGGAGRRGGHGGDG Consensus sequence (reverse complement motif): CHCCBCCKMCTCCKCM Alignment: CHCCBCCKMCTCCKCM HVGCCCCGCCCCBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 5 TFF11 Reverse Complement Original Motif Forward 1 14 0.0937271 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GGMGGRGGCGGVGC BBGGGGCGGGGCVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 TFF1 Original Motif Original Motif Forward 1 12 1.08016 Consensus sequence (original motif): CGGVGCCGCVGC Consensus sequence (reverse complement motif): GCVGCGGCBCCG Alignment: CGGVGCCGCVGC-- HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 TFW3 Original Motif Original Motif Forward 1 10 2.07757 Consensus sequence (original motif): CGGCYBCGCG Consensus sequence (reverse complement motif): CGCGBMGCCG Alignment: CGGCYBCGCG---- HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 16 Motif name: kcACCTGCAgc Consensus sequence (original motif): BCACCTGCABC Consensus sequence (reverse complement motif): GBTGCAGGTGB *************************************************************** Best Matches for Top Significant Motif ID 16 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 5 TFF11 Reverse Complement Original Motif Backward 4 11 0.0312321 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GGMGGRGGCGGVGC GBTGCAGGTGB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 TFM12 Reverse Complement Reverse Complement Backward 6 11 0.0444938 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: KKKAGGDGGAKKMGBBGKMG ----GBTGCAGGTGB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 6 TFM2 Reverse Complement Original Motif Backward 7 10 0.538471 Consensus sequence (original motif): RGRGGAGRRGGHGGDG Consensus sequence (reverse complement motif): CHCCBCCKMCTCCKCM Alignment: -RGRGGAGRRGGHGGDG GBTGCAGGTGB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 TFF1 Original Motif Reverse Complement Forward 5 8 1.54364 Consensus sequence (original motif): CGGVGCCGCVGC Consensus sequence (reverse complement motif): GCVGCGGCBCCG Alignment: GCVGCGGCBCCG--- ----BCACCTGCABC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 TFW3 Reverse Complement Original Motif Backward 3 8 1.5466 Consensus sequence (original motif): CGGCYBCGCG Consensus sequence (reverse complement motif): CGCGBMGCCG Alignment: ---CGGCYBCGCG GBTGCAGGTGB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 19 Motif name: wsTACwGTAsw Consensus sequence (original motif): HVTACWGTABD Consensus sequence (reverse complement motif): DBTACWGTAVH *************************************************************** Best Matches for Top Significant Motif ID 19 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 TFM3 Reverse Complement Original Motif Backward 5 11 0.0413797 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW Alignment: WWHTTTTTCABAAWTTWA ---DBTACWGTAVH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 TFM13 Original Motif Reverse Complement Backward 3 11 0.0445707 Consensus sequence (original motif): ATKAAWTTTTRMAABAHHTW Consensus sequence (reverse complement motif): WAHHTVTTYKAAAAWTTRAT Alignment: WAHHTVTTYKAAAAWTTRAT -------HVTACWGTABD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 11 TFM11 Reverse Complement Original Motif Forward 4 11 0.0472742 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: HDWVAAAHAAAAAMAAAMWWWHBWA ---DBTACWGTAVH----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 TFM1 Reverse Complement Original Motif Forward 10 9 1.04742 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW Alignment: WTKTTTTTHWTTTTTTBT-- ---------DBTACWGTAVH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 TFM12 Reverse Complement Original Motif Backward 15 6 2.54736 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: -----CYYCBBCYYYTCCHCCTYYY DBTACWGTAVH-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 17 Motif name: wwAAATAATAtw Consensus sequence (original motif): HDAAATAATADD Consensus sequence (reverse complement motif): DDTATTATTTDH *************************************************************** Best Matches for Top Significant Motif ID 17 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 TFM1 Original Motif Reverse Complement Forward 7 12 0.0565705 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW Alignment: ABAAAAAAWHAAAAARAW ------HDAAATAATADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 11 TFM11 Original Motif Original Motif Forward 3 12 0.0575935 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: HDWVAAAHAAAAAMAAAMWWWHBWA --HDAAATAATADD----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 TFM13 Reverse Complement Original Motif Backward 1 12 0.0712963 Consensus sequence (original motif): ATKAAWTTTTRMAABAHHTW Consensus sequence (reverse complement motif): WAHHTVTTYKAAAAWTTRAT Alignment: ATKAAWTTTTRMAABAHHTW --------DDTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 TFM3 Original Motif Reverse Complement Backward 1 12 0.0733516 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW Alignment: TWAAWTTVTGAAAAAHWW ------HDAAATAATADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 TFM12 Reverse Complement Reverse Complement Backward 16 5 3.59569 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: -------KKKAGGDGGAKKMGBBGKMG DDTATTATTTDH--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 13 Motif name: tkAAATAATAtw Consensus sequence (original motif): HDAAATAATAHW Consensus sequence (reverse complement motif): WHTATTATTTDH *************************************************************** Best Matches for Top Significant Motif ID 13 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 11 TFM11 Reverse Complement Reverse Complement Backward 3 12 0.0590505 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: TWVHWWWYTTTYTTTTTHTTTVWBH -----------WHTATTATTTDH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 TFM1 Reverse Complement Original Motif Forward 1 12 0.0637702 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW Alignment: WTKTTTTTHWTTTTTTBT WHTATTATTTDH------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 TFM13 Reverse Complement Original Motif Forward 9 12 0.0704475 Consensus sequence (original motif): ATKAAWTTTTRMAABAHHTW Consensus sequence (reverse complement motif): WAHHTVTTYKAAAAWTTRAT Alignment: ATKAAWTTTTRMAABAHHTW --------WHTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 TFM3 Original Motif Reverse Complement Backward 1 12 0.0763819 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW Alignment: TWAAWTTVTGAAAAAHWW ------HDAAATAATAHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 TFM12 Reverse Complement Reverse Complement Backward 16 5 3.59273 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: -------KKKAGGDGGAKKMGBBGKMG WHTATTATTTDH--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 20 Motif name: dhACATTCTkh Consensus sequence (original motif): DHACATTCTGH Consensus sequence (reverse complement motif): HCAGAATGTHD *************************************************************** Best Matches for Top Significant Motif ID 20 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 TFM3 Reverse Complement Original Motif Backward 8 11 0.00522383 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW Alignment: WWHTTTTTCABAAWTTWA HCAGAATGTHD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 11 TFM11 Reverse Complement Original Motif Backward 11 11 0.014258 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: HDWVAAAHAAAAAMAAAMWWWHBWA ----HCAGAATGTHD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 TFM13 Original Motif Original Motif Backward 9 11 0.0192045 Consensus sequence (original motif): ATKAAWTTTTRMAABAHHTW Consensus sequence (reverse complement motif): WAHHTVTTYKAAAAWTTRAT Alignment: ATKAAWTTTTRMAABAHHTW -DHACATTCTGH-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 TFM1 Reverse Complement Reverse Complement Forward 9 10 0.519904 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW Alignment: ABAAAAAAWHAAAAARAW- --------HCAGAATGTHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 TFM12 Original Motif Original Motif Backward 17 4 3.5 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: -------CYYCBBCYYYTCCHCCTYYY DHACATTCTGH---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 2 Motif name: TFW2 Consensus sequence (original motif): SCGCGCGG Consensus sequence (reverse complement motif): CCGCGCGS *************************************************************** Best Matches for Top Significant Motif ID 2 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 12 csGCCCCGCCCCsc Original Motif Reverse Complement Forward 2 8 0.0456233 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: BBGGGGCGGGGCVD -SCGCGCGG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 14 cccGCCCCGCCCCsb Reverse Complement Original Motif Forward 7 8 0.045686 Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB Alignment: BCCGCCCCGCCCCBB ------CCGCGCGS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 18 sSGTCACGTGACSs Original Motif Original Motif Backward 4 8 0.0988223 Consensus sequence (original motif): SGGTCACGTGACCS Consensus sequence (reverse complement motif): SGGTCACGTGACCS Alignment: SGGTCACGTGACCS ---SCGCGCGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 16 kcACCTGCAgc Original Motif Reverse Complement Backward 8 4 2.08456 Consensus sequence (original motif): BCACCTGCABC Consensus sequence (reverse complement motif): GBTGCAGGTGB Alignment: ----GBTGCAGGTGB SCGCGCGG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 15 kCAGCCAATmr Reverse Complement Reverse Complement Forward 8 4 2.0901 Consensus sequence (original motif): DCAGCCAATVR Consensus sequence (reverse complement motif): MBATTGGCTGH Alignment: MBATTGGCTGH---- -------CCGCGCGS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- **************************************************************************************************************************************************************************************************** **************************************************************** Significant Motifs - Global and Local Matching (Highest to Lowest) **************************************************************** Dataset #: 2 Motif ID: 20 Motif name: dhACATTCTkh Consensus sequence (original motif): DHACATTCTGH Consensus sequence (reverse complement motif): HCAGAATGTHD ************************************************************** Best Matches for Significant Motif ID 20 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 TFM3 Reverse Complement Original Motif Backward 8 11 0.00522383 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW Alignment: WWHTTTTTCABAAWTTWA HCAGAATGTHD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 16 kcACCTGCAgc Original Motif Original Motif Backward 1 11 0.00731643 Consensus sequence (original motif): BCACCTGCABC Consensus sequence (reverse complement motif): GBTGCAGGTGB Alignment: BCACCTGCABC DHACATTCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 wwAAATAATAtw Reverse Complement Reverse Complement Forward 2 11 0.0127231 Consensus sequence (original motif): HDAAATAATADD Consensus sequence (reverse complement motif): DDTATTATTTDH Alignment: DDTATTATTTDH -HCAGAATGTHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 11 TFM11 Reverse Complement Original Motif Forward 5 11 0.014258 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: HDWVAAAHAAAAAMAAAMWWWHBWA ----HCAGAATGTHD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 TFM13 Original Motif Original Motif Backward 9 11 0.0192045 Consensus sequence (original motif): ATKAAWTTTTRMAABAHHTW Consensus sequence (reverse complement motif): WAHHTVTTYKAAAAWTTRAT Alignment: ATKAAWTTTTRMAABAHHTW -DHACATTCTGH-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 21 Motif name: wbgTAAATAww Consensus sequence (original motif): DBGTAAATAHD Consensus sequence (reverse complement motif): DHTATTTACBD ************************************************************** Best Matches for Significant Motif ID 21 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 13 tkAAATAATAtw Original Motif Original Motif Backward 1 11 0.0162338 Consensus sequence (original motif): HDAAATAATAHW Consensus sequence (reverse complement motif): WHTATTATTTDH Alignment: HDAAATAATAHW -DBGTAAATAHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 wwAAATAATAtw Reverse Complement Reverse Complement Backward 2 11 0.0164863 Consensus sequence (original motif): HDAAATAATADD Consensus sequence (reverse complement motif): DDTATTATTTDH Alignment: DDTATTATTTDH DHTATTTACBD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 11 TFM11 Reverse Complement Reverse Complement Forward 15 11 0.0192768 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: TWVHWWWYTTTYTTTTTHTTTVWBH --------------DHTATTTACBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 TFM1 Reverse Complement Original Motif Forward 1 11 0.0283217 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW Alignment: WTKTTTTTHWTTTTTTBT DHTATTTACBD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 TFM3 Reverse Complement Original Motif Backward 2 11 0.0308097 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW Alignment: WWHTTTTTCABAAWTTWA ------DHTATTTACBD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 16 Motif name: kcACCTGCAgc Consensus sequence (original motif): BCACCTGCABC Consensus sequence (reverse complement motif): GBTGCAGGTGB ************************************************************** Best Matches for Significant Motif ID 16 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 19 wsTACwGTAsw Original Motif Reverse Complement Backward 1 11 0.0182895 Consensus sequence (original motif): HVTACWGTABD Consensus sequence (reverse complement motif): DBTACWGTAVH Alignment: DBTACWGTAVH BCACCTGCABC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 20 dhACATTCTkh Original Motif Original Motif Backward 1 11 0.0221745 Consensus sequence (original motif): DHACATTCTGH Consensus sequence (reverse complement motif): HCAGAATGTHD Alignment: DHACATTCTGH BCACCTGCABC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 18 sSGTCACGTGACSs Original Motif Original Motif Forward 4 11 0.0280991 Consensus sequence (original motif): SGGTCACGTGACCS Consensus sequence (reverse complement motif): SGGTCACGTGACCS Alignment: SGGTCACGTGACCS ---BCACCTGCABC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 5 TFF11 Reverse Complement Original Motif Backward 4 11 0.0312321 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GGMGGRGGCGGVGC GBTGCAGGTGB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 12 csGCCCCGCCCCsc Original Motif Original Motif Forward 2 11 0.0370129 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: HVGCCCCGCCCCBB -BCACCTGCABC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 19 Motif name: wsTACwGTAsw Consensus sequence (original motif): HVTACWGTABD Consensus sequence (reverse complement motif): DBTACWGTAVH ************************************************************** Best Matches for Significant Motif ID 19 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 16 kcACCTGCAgc Original Motif Reverse Complement Backward 1 11 0.0199592 Consensus sequence (original motif): BCACCTGCABC Consensus sequence (reverse complement motif): GBTGCAGGTGB Alignment: GBTGCAGGTGB HVTACWGTABD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 wwAAATAATAtw Original Motif Reverse Complement Backward 1 11 0.0309343 Consensus sequence (original motif): HDAAATAATADD Consensus sequence (reverse complement motif): DDTATTATTTDH Alignment: DDTATTATTTDH -HVTACWGTABD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 13 tkAAATAATAtw Reverse Complement Original Motif Forward 1 11 0.0337121 Consensus sequence (original motif): HDAAATAATAHW Consensus sequence (reverse complement motif): WHTATTATTTDH Alignment: HDAAATAATAHW DBTACWGTAVH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 21 wbgTAAATAww Reverse Complement Original Motif Backward 1 11 0.037518 Consensus sequence (original motif): DBGTAAATAHD Consensus sequence (reverse complement motif): DHTATTTACBD Alignment: DBGTAAATAHD DBTACWGTAVH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 TFM3 Reverse Complement Original Motif Backward 5 11 0.0413797 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW Alignment: WWHTTTTTCABAAWTTWA ---DBTACWGTAVH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 15 Motif name: kCAGCCAATmr Consensus sequence (original motif): DCAGCCAATVR Consensus sequence (reverse complement motif): MBATTGGCTGH ************************************************************** Best Matches for Significant Motif ID 15 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 13 tkAAATAATAtw Reverse Complement Reverse Complement Forward 2 11 0.0320614 Consensus sequence (original motif): HDAAATAATAHW Consensus sequence (reverse complement motif): WHTATTATTTDH Alignment: WHTATTATTTDH -MBATTGGCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 20 dhACATTCTkh Original Motif Reverse Complement Backward 1 11 0.034958 Consensus sequence (original motif): DHACATTCTGH Consensus sequence (reverse complement motif): HCAGAATGTHD Alignment: HCAGAATGTHD DCAGCCAATVR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 wwAAATAATAtw Reverse Complement Reverse Complement Forward 2 11 0.0358988 Consensus sequence (original motif): HDAAATAATADD Consensus sequence (reverse complement motif): DDTATTATTTDH Alignment: DDTATTATTTDH -MBATTGGCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 16 kcACCTGCAgc Reverse Complement Original Motif Backward 1 11 0.0360892 Consensus sequence (original motif): BCACCTGCABC Consensus sequence (reverse complement motif): GBTGCAGGTGB Alignment: BCACCTGCABC MBATTGGCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 5 TFF11 Reverse Complement Original Motif Backward 2 11 0.0376063 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GGMGGRGGCGGVGC --MBATTGGCTGH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 4 Motif name: TFF1 Consensus sequence (original motif): CGGVGCCGCVGC Consensus sequence (reverse complement motif): GCVGCGGCBCCG ************************************************************** Best Matches for Significant Motif ID 4 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 5 TFF11 Original Motif Original Motif Backward 1 12 0.0292081 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GGMGGRGGCGGVGC --CGGVGCCGCVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 12 csGCCCCGCCCCsc Original Motif Original Motif Forward 1 12 0.0542674 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: HVGCCCCGCCCCBB CGGVGCCGCVGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 TFM12 Original Motif Reverse Complement Forward 7 12 0.0543272 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: KKKAGGDGGAKKMGBBGKMG ------CGGVGCCGCVGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 14 cccGCCCCGCCCCsb Reverse Complement Original Motif Forward 4 12 0.0548371 Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB Alignment: BCCGCCCCGCCCCBB ---GCVGCGGCBCCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 6 TFM2 Reverse Complement Reverse Complement Backward 3 12 0.0594165 Consensus sequence (original motif): RGRGGAGRRGGHGGDG Consensus sequence (reverse complement motif): CHCCBCCKMCTCCKCM Alignment: CHCCBCCKMCTCCKCM --GCVGCGGCBCCG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 17 Motif name: wwAAATAATAtw Consensus sequence (original motif): HDAAATAATADD Consensus sequence (reverse complement motif): DDTATTATTTDH ************************************************************** Best Matches for Significant Motif ID 17 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 13 tkAAATAATAtw Original Motif Original Motif Forward 1 12 0 Consensus sequence (original motif): HDAAATAATAHW Consensus sequence (reverse complement motif): WHTATTATTTDH Alignment: HDAAATAATAHW HDAAATAATADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 TFM1 Original Motif Reverse Complement Forward 7 12 0.0565705 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW Alignment: ABAAAAAAWHAAAAARAW ------HDAAATAATADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 11 TFM11 Original Motif Original Motif Forward 3 12 0.0575935 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: HDWVAAAHAAAAAMAAAMWWWHBWA --HDAAATAATADD----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 TFM13 Reverse Complement Original Motif Backward 1 12 0.0712963 Consensus sequence (original motif): ATKAAWTTTTRMAABAHHTW Consensus sequence (reverse complement motif): WAHHTVTTYKAAAAWTTRAT Alignment: ATKAAWTTTTRMAABAHHTW --------DDTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 TFM3 Original Motif Reverse Complement Backward 1 12 0.0733516 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW Alignment: TWAAWTTVTGAAAAAHWW ------HDAAATAATADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 1 Motif name: TFW1 Consensus sequence (original motif): GTCGCG Consensus sequence (reverse complement motif): CGCGAC ************************************************************** Best Matches for Significant Motif ID 1 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 TFW3 Original Motif Original Motif Backward 1 6 0.0350356 Consensus sequence (original motif): CGGCYBCGCG Consensus sequence (reverse complement motif): CGCGBMGCCG Alignment: CGGCYBCGCG ----GTCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 18 sSGTCACGTGACSs Original Motif Original Motif Forward 3 6 0.0375102 Consensus sequence (original motif): SGGTCACGTGACCS Consensus sequence (reverse complement motif): SGGTCACGTGACCS Alignment: SGGTCACGTGACCS --GTCGCG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 5 TFF11 Reverse Complement Reverse Complement Forward 5 6 0.0381641 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GCVCCGCCMCCYCC ----CGCGAC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 TFF1 Reverse Complement Original Motif Backward 1 6 0.0431161 Consensus sequence (original motif): CGGVGCCGCVGC Consensus sequence (reverse complement motif): GCVGCGGCBCCG Alignment: CGGVGCCGCVGC ------CGCGAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 TFW2 Reverse Complement Reverse Complement Forward 2 6 0.052047 Consensus sequence (original motif): SCGCGCGG Consensus sequence (reverse complement motif): CCGCGCGS Alignment: CCGCGCGS -CGCGAC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 12 csGCCCCGCCCCsc Original Motif Original Motif Backward 7 6 0.0539 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: HVGCCCCGCCCCBB --GTCGCG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 13 Motif name: tkAAATAATAtw Consensus sequence (original motif): HDAAATAATAHW Consensus sequence (reverse complement motif): WHTATTATTTDH ************************************************************** Best Matches for Significant Motif ID 13 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 wwAAATAATAtw Original Motif Original Motif Forward 1 12 0 Consensus sequence (original motif): HDAAATAATADD Consensus sequence (reverse complement motif): DDTATTATTTDH Alignment: HDAAATAATADD HDAAATAATAHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 11 TFM11 Reverse Complement Reverse Complement Forward 12 12 0.0590505 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: TWVHWWWYTTTYTTTTTHTTTVWBH -----------WHTATTATTTDH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 TFM1 Reverse Complement Original Motif Forward 1 12 0.0637702 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW Alignment: WTKTTTTTHWTTTTTTBT WHTATTATTTDH------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 TFM13 Reverse Complement Original Motif Forward 9 12 0.0704475 Consensus sequence (original motif): ATKAAWTTTTRMAABAHHTW Consensus sequence (reverse complement motif): WAHHTVTTYKAAAAWTTRAT Alignment: ATKAAWTTTTRMAABAHHTW --------WHTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 TFM3 Original Motif Reverse Complement Backward 1 12 0.0763819 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW Alignment: TWAAWTTVTGAAAAAHWW ------HDAAATAATAHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 2 Motif name: TFW2 Consensus sequence (original motif): SCGCGCGG Consensus sequence (reverse complement motif): CCGCGCGS ************************************************************** Best Matches for Significant Motif ID 2 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 12 csGCCCCGCCCCsc Original Motif Reverse Complement Forward 2 8 0.0456233 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: BBGGGGCGGGGCVD -SCGCGCGG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 14 cccGCCCCGCCCCsb Reverse Complement Original Motif Forward 7 8 0.045686 Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB Alignment: BCCGCCCCGCCCCBB ------CCGCGCGS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 5 TFF11 Original Motif Original Motif Forward 4 8 0.0583967 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GGMGGRGGCGGVGC ---SCGCGCGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 TFF1 Original Motif Original Motif Backward 5 8 0.060966 Consensus sequence (original motif): CGGVGCCGCVGC Consensus sequence (reverse complement motif): GCVGCGGCBCCG Alignment: CGGVGCCGCVGC SCGCGCGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 TFW3 Original Motif Reverse Complement Forward 3 8 0.0906073 Consensus sequence (original motif): CGGCYBCGCG Consensus sequence (reverse complement motif): CGCGBMGCCG Alignment: CGCGBMGCCG --SCGCGCGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- **************************************************************************************************************************************************************************************************** ********************************************************************** Best Matches for Each Motif (Highest to Lowest) ***************************************************************************** Dataset #: 1 Motif ID: 1 Motif name: TFW1 Consensus sequence (original motif): GTCGCG Consensus sequence (reverse complement motif): CGCGAC ************************************************************************ Best Matches for Motif ID 1 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 TFW3 Original Motif Original Motif Backward 1 6 0.0350356 Consensus sequence (original motif): CGGCYBCGCG Consensus sequence (reverse complement motif): CGCGBMGCCG Alignment: CGGCYBCGCG ----GTCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 18 sSGTCACGTGACSs Original Motif Original Motif Forward 3 6 0.0375102 Consensus sequence (original motif): SGGTCACGTGACCS Consensus sequence (reverse complement motif): SGGTCACGTGACCS Alignment: SGGTCACGTGACCS --GTCGCG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 5 TFF11 Reverse Complement Reverse Complement Forward 5 6 0.0381641 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GCVCCGCCMCCYCC ----CGCGAC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 TFF1 Reverse Complement Original Motif Backward 1 6 0.0431161 Consensus sequence (original motif): CGGVGCCGCVGC Consensus sequence (reverse complement motif): GCVGCGGCBCCG Alignment: CGGVGCCGCVGC ------CGCGAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 TFW2 Reverse Complement Reverse Complement Forward 2 6 0.052047 Consensus sequence (original motif): SCGCGCGG Consensus sequence (reverse complement motif): CCGCGCGS Alignment: CCGCGCGS -CGCGAC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 12 csGCCCCGCCCCsc Original Motif Original Motif Backward 7 6 0.0539 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: HVGCCCCGCCCCBB --GTCGCG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 2 Motif name: TFW2 Consensus sequence (original motif): SCGCGCGG Consensus sequence (reverse complement motif): CCGCGCGS ************************************************************************ Best Matches for Motif ID 2 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 12 csGCCCCGCCCCsc Original Motif Reverse Complement Forward 2 8 0.0456233 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: BBGGGGCGGGGCVD -SCGCGCGG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 14 cccGCCCCGCCCCsb Reverse Complement Original Motif Forward 7 8 0.045686 Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB Alignment: BCCGCCCCGCCCCBB ------CCGCGCGS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 5 TFF11 Original Motif Original Motif Forward 4 8 0.0583967 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GGMGGRGGCGGVGC ---SCGCGCGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 TFF1 Original Motif Original Motif Backward 5 8 0.060966 Consensus sequence (original motif): CGGVGCCGCVGC Consensus sequence (reverse complement motif): GCVGCGGCBCCG Alignment: CGGVGCCGCVGC SCGCGCGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 TFW3 Original Motif Reverse Complement Forward 3 8 0.0906073 Consensus sequence (original motif): CGGCYBCGCG Consensus sequence (reverse complement motif): CGCGBMGCCG Alignment: CGCGBMGCCG --SCGCGCGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 3 Motif name: TFW3 Consensus sequence (original motif): CGGCYBCGCG Consensus sequence (reverse complement motif): CGCGBMGCCG ************************************************************************ Best Matches for Motif ID 3 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 TFF1 Original Motif Original Motif Backward 3 10 0.0623879 Consensus sequence (original motif): CGGVGCCGCVGC Consensus sequence (reverse complement motif): GCVGCGGCBCCG Alignment: CGGVGCCGCVGC CGGCYBCGCG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 5 TFF11 Reverse Complement Original Motif Forward 1 10 0.0645308 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GGMGGRGGCGGVGC CGCGBMGCCG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 12 csGCCCCGCCCCsc Original Motif Original Motif Backward 5 10 0.0718771 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: HVGCCCCGCCCCBB CGGCYBCGCG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 14 cccGCCCCGCCCCsb Original Motif Original Motif Backward 5 10 0.0719604 Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB Alignment: BCCGCCCCGCCCCBB -CGGCYBCGCG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 TFM12 Reverse Complement Reverse Complement Forward 11 10 0.0767689 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: KKKAGGDGGAKKMGBBGKMG ----------CGCGBMGCCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 4 Motif name: TFF1 Consensus sequence (original motif): CGGVGCCGCVGC Consensus sequence (reverse complement motif): GCVGCGGCBCCG ************************************************************************ Best Matches for Motif ID 4 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 5 TFF11 Original Motif Original Motif Backward 1 12 0.0292081 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GGMGGRGGCGGVGC --CGGVGCCGCVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 12 csGCCCCGCCCCsc Original Motif Original Motif Forward 1 12 0.0542674 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: HVGCCCCGCCCCBB CGGVGCCGCVGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 TFM12 Original Motif Reverse Complement Forward 7 12 0.0543272 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: KKKAGGDGGAKKMGBBGKMG ------CGGVGCCGCVGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 14 cccGCCCCGCCCCsb Reverse Complement Original Motif Forward 4 12 0.0548371 Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB Alignment: BCCGCCCCGCCCCBB ---GCVGCGGCBCCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 6 TFM2 Reverse Complement Reverse Complement Backward 3 12 0.0594165 Consensus sequence (original motif): RGRGGAGRRGGHGGDG Consensus sequence (reverse complement motif): CHCCBCCKMCTCCKCM Alignment: CHCCBCCKMCTCCKCM --GCVGCGGCBCCG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 5 Motif name: TFF11 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC ************************************************************************ Best Matches for Motif ID 5 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 6 TFM2 Original Motif Original Motif Forward 1 14 0.033716 Consensus sequence (original motif): RGRGGAGRRGGHGGDG Consensus sequence (reverse complement motif): CHCCBCCKMCTCCKCM Alignment: RGRGGAGRRGGHGGDG GGMGGRGGCGGVGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 TFM12 Reverse Complement Original Motif Forward 6 14 0.0386905 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: CYYCBBCYYYTCCHCCTYYY -----GCVCCGCCMCCYCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 14 cccGCCCCGCCCCsb Reverse Complement Original Motif Backward 2 14 0.0548198 Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB Alignment: BCCGCCCCGCCCCBB GCVCCGCCMCCYCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 12 csGCCCCGCCCCsc Reverse Complement Original Motif Forward 1 14 0.0652173 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: HVGCCCCGCCCCBB GCVCCGCCMCCYCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 TFF1 Original Motif Original Motif Backward 1 12 1.02659 Consensus sequence (original motif): CGGVGCCGCVGC Consensus sequence (reverse complement motif): GCVGCGGCBCCG Alignment: --CGGVGCCGCVGC GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 6 Motif name: TFM2 Consensus sequence (original motif): RGRGGAGRRGGHGGDG Consensus sequence (reverse complement motif): CHCCBCCKMCTCCKCM ************************************************************************ Best Matches for Motif ID 6 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 TFM12 Reverse Complement Original Motif Forward 1 16 0.0331473 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: CYYCBBCYYYTCCHCCTYYY CHCCBCCKMCTCCKCM---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 11 TFM11 Original Motif Original Motif Forward 8 16 0.0794752 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: HDWVAAAHAAAAAMAAAMWWWHBWA -------RGRGGAGRRGGHGGDG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 14 cccGCCCCGCCCCsb Original Motif Reverse Complement Forward 1 15 0.558405 Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB Alignment: BBGGGGCGGGGCGGB- RGRGGAGRRGGHGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 5 TFF11 Original Motif Original Motif Forward 1 14 1.03372 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GGMGGRGGCGGVGC-- RGRGGAGRRGGHGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 12 csGCCCCGCCCCsc Original Motif Reverse Complement Forward 1 14 1.05955 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: BBGGGGCGGGGCVD-- RGRGGAGRRGGHGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 7 Motif name: TFM1 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW ************************************************************************ Best Matches for Motif ID 7 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 11 TFM11 Original Motif Reverse Complement Forward 6 18 0 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: TWVHWWWYTTTYTTTTTHTTTVWBH -----WTKTTTTTHWTTTTTTBT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 TFM13 Reverse Complement Original Motif Backward 3 18 0.0364672 Consensus sequence (original motif): ATKAAWTTTTRMAABAHHTW Consensus sequence (reverse complement motif): WAHHTVTTYKAAAAWTTRAT Alignment: ATKAAWTTTTRMAABAHHTW ABAAAAAAWHAAAAARAW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 TFM3 Original Motif Original Motif Backward 1 18 0.0456974 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW Alignment: WWHTTTTTCABAAWTTWA WTKTTTTTHWTTTTTTBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 TFM12 Original Motif Original Motif Forward 4 17 0.572783 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: CYYCBBCYYYTCCHCCTYYY- ---WTKTTTTTHWTTTTTTBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 wwAAATAATAtw Original Motif Reverse Complement Backward 1 12 3.0279 Consensus sequence (original motif): HDAAATAATADD Consensus sequence (reverse complement motif): DDTATTATTTDH Alignment: ------DDTATTATTTDH WTKTTTTTHWTTTTTTBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 8 Motif name: TFM3 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW ************************************************************************ Best Matches for Motif ID 8 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 TFM13 Reverse Complement Original Motif Forward 2 18 0.00833981 Consensus sequence (original motif): ATKAAWTTTTRMAABAHHTW Consensus sequence (reverse complement motif): WAHHTVTTYKAAAAWTTRAT Alignment: ATKAAWTTTTRMAABAHHTW -TWAAWTTVTGAAAAAHWW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 11 TFM11 Original Motif Reverse Complement Forward 5 18 0.0346965 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: TWVHWWWYTTTYTTTTTHTTTVWBH ----WWHTTTTTCABAAWTTWA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 TFM1 Original Motif Original Motif Backward 1 18 0.0376845 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW Alignment: WTKTTTTTHWTTTTTTBT WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 wwAAATAATAtw Original Motif Reverse Complement Backward 1 12 3.03666 Consensus sequence (original motif): HDAAATAATADD Consensus sequence (reverse complement motif): DDTATTATTTDH Alignment: ------DDTATTATTTDH WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 13 tkAAATAATAtw Original Motif Reverse Complement Backward 1 12 3.0397 Consensus sequence (original motif): HDAAATAATAHW Consensus sequence (reverse complement motif): WHTATTATTTDH Alignment: ------WHTATTATTTDH WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 9 Motif name: TFM12 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG ************************************************************************ Best Matches for Motif ID 9 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 11 TFM11 Original Motif Reverse Complement Backward 6 20 0.0550447 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: TWVHWWWYTTTYTTTTTHTTTVWBH CYYCBBCYYYTCCHCCTYYY----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 TFM1 Original Motif Original Motif Backward 2 17 1.56027 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW Alignment: ---WTKTTTTTHWTTTTTTBT CYYCBBCYYYTCCHCCTYYY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 6 TFM2 Reverse Complement Original Motif Forward 1 16 2.0134 Consensus sequence (original motif): RGRGGAGRRGGHGGDG Consensus sequence (reverse complement motif): CHCCBCCKMCTCCKCM Alignment: RGRGGAGRRGGHGGDG---- KKKAGGDGGAKKMGBBGKMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 14 cccGCCCCGCCCCsb Original Motif Original Motif Backward 1 15 2.54994 Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB Alignment: -----BCCGCCCCGCCCCBB CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 12 csGCCCCGCCCCsc Reverse Complement Reverse Complement Backward 1 14 3.04796 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: ------BBGGGGCGGGGCVD KKKAGGDGGAKKMGBBGKMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 10 Motif name: TFM13 Consensus sequence (original motif): ATKAAWTTTTRMAABAHHTW Consensus sequence (reverse complement motif): WAHHTVTTYKAAAAWTTRAT ************************************************************************ Best Matches for Motif ID 10 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 11 TFM11 Reverse Complement Reverse Complement Forward 5 20 0.0352451 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: TWVHWWWYTTTYTTTTTHTTTVWBH ----WAHHTVTTYKAAAAWTTRAT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 TFM3 Original Motif Reverse Complement Forward 1 18 1.02254 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW Alignment: TWAAWTTVTGAAAAAHWW-- ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 TFM1 Reverse Complement Original Motif Forward 1 18 1.02868 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW Alignment: WTKTTTTTHWTTTTTTBT-- WAHHTVTTYKAAAAWTTRAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 13 tkAAATAATAtw Reverse Complement Original Motif Backward 1 12 4.03399 Consensus sequence (original motif): HDAAATAATAHW Consensus sequence (reverse complement motif): WHTATTATTTDH Alignment: --------HDAAATAATAHW WAHHTVTTYKAAAAWTTRAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 wwAAATAATAtw Reverse Complement Original Motif Backward 1 12 4.03484 Consensus sequence (original motif): HDAAATAATADD Consensus sequence (reverse complement motif): DDTATTATTTDH Alignment: --------HDAAATAATADD WAHHTVTTYKAAAAWTTRAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 11 Motif name: TFM11 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH ************************************************************************ Best Matches for Motif ID 11 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 TFM13 Reverse Complement Reverse Complement Forward 1 20 0.0486765 Consensus sequence (original motif): ATKAAWTTTTRMAABAHHTW Consensus sequence (reverse complement motif): WAHHTVTTYKAAAAWTTRAT Alignment: WAHHTVTTYKAAAAWTTRAT----- TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 TFM12 Original Motif Reverse Complement Forward 1 20 0.0693284 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: KKKAGGDGGAKKMGBBGKMG----- HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 TFM1 Original Motif Reverse Complement Backward 1 18 1.0232 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW Alignment: -------ABAAAAAAWHAAAAARAW HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 TFM3 Reverse Complement Original Motif Forward 1 18 1.05388 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW Alignment: WWHTTTTTCABAAWTTWA------- TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 wwAAATAATAtw Original Motif Original Motif Forward 1 12 4.03464 Consensus sequence (original motif): HDAAATAATADD Consensus sequence (reverse complement motif): DDTATTATTTDH Alignment: HDAAATAATADD------------- HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 12 Motif name: csGCCCCGCCCCsc Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD ************************************************************************ Best Matches for Motif ID 12 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 14 cccGCCCCGCCCCsb Original Motif Original Motif Backward 1 14 0 Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB Alignment: BCCGCCCCGCCCCBB -HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 TFM12 Original Motif Original Motif Backward 4 14 0.0777991 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: CYYCBBCYYYTCCHCCTYYY ---HVGCCCCGCCCCBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 6 TFM2 Original Motif Reverse Complement Backward 3 14 0.0880609 Consensus sequence (original motif): RGRGGAGRRGGHGGDG Consensus sequence (reverse complement motif): CHCCBCCKMCTCCKCM Alignment: CHCCBCCKMCTCCKCM HVGCCCCGCCCCBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 5 TFF11 Reverse Complement Original Motif Forward 1 14 0.0937271 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GGMGGRGGCGGVGC BBGGGGCGGGGCVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 18 sSGTCACGTGACSs Original Motif Reverse Complement Forward 1 14 0.0971132 Consensus sequence (original motif): SGGTCACGTGACCS Consensus sequence (reverse complement motif): SGGTCACGTGACCS Alignment: SGGTCACGTGACCS HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 13 Motif name: tkAAATAATAtw Consensus sequence (original motif): HDAAATAATAHW Consensus sequence (reverse complement motif): WHTATTATTTDH ************************************************************************ Best Matches for Motif ID 13 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 wwAAATAATAtw Original Motif Original Motif Forward 1 12 0 Consensus sequence (original motif): HDAAATAATADD Consensus sequence (reverse complement motif): DDTATTATTTDH Alignment: HDAAATAATADD HDAAATAATAHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 11 TFM11 Reverse Complement Reverse Complement Forward 12 12 0.0590505 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: TWVHWWWYTTTYTTTTTHTTTVWBH -----------WHTATTATTTDH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 TFM1 Reverse Complement Original Motif Forward 1 12 0.0637702 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW Alignment: WTKTTTTTHWTTTTTTBT WHTATTATTTDH------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 TFM13 Reverse Complement Original Motif Forward 9 12 0.0704475 Consensus sequence (original motif): ATKAAWTTTTRMAABAHHTW Consensus sequence (reverse complement motif): WAHHTVTTYKAAAAWTTRAT Alignment: ATKAAWTTTTRMAABAHHTW --------WHTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 TFM3 Original Motif Reverse Complement Backward 1 12 0.0763819 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW Alignment: TWAAWTTVTGAAAAAHWW ------HDAAATAATAHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 14 Motif name: cccGCCCCGCCCCsb Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB ************************************************************************ Best Matches for Motif ID 14 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 TFM12 Original Motif Original Motif Forward 3 15 0.0773345 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: CYYCBBCYYYTCCHCCTYYY --BCCGCCCCGCCCCBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 6 TFM2 Original Motif Reverse Complement Forward 1 15 0.0869149 Consensus sequence (original motif): RGRGGAGRRGGHGGDG Consensus sequence (reverse complement motif): CHCCBCCKMCTCCKCM Alignment: CHCCBCCKMCTCCKCM BCCGCCCCGCCCCBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 12 csGCCCCGCCCCsc Reverse Complement Reverse Complement Forward 1 14 0.5 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: BBGGGGCGGGGCVD- BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 5 TFF11 Reverse Complement Original Motif Forward 1 14 0.58333 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GGMGGRGGCGGVGC- BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 18 sSGTCACGTGACSs Reverse Complement Original Motif Forward 1 14 0.601399 Consensus sequence (original motif): SGGTCACGTGACCS Consensus sequence (reverse complement motif): SGGTCACGTGACCS Alignment: SGGTCACGTGACCS- BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 15 Motif name: kCAGCCAATmr Consensus sequence (original motif): DCAGCCAATVR Consensus sequence (reverse complement motif): MBATTGGCTGH ************************************************************************ Best Matches for Motif ID 15 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 13 tkAAATAATAtw Reverse Complement Reverse Complement Forward 2 11 0.0320614 Consensus sequence (original motif): HDAAATAATAHW Consensus sequence (reverse complement motif): WHTATTATTTDH Alignment: WHTATTATTTDH -MBATTGGCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 20 dhACATTCTkh Original Motif Reverse Complement Backward 1 11 0.034958 Consensus sequence (original motif): DHACATTCTGH Consensus sequence (reverse complement motif): HCAGAATGTHD Alignment: HCAGAATGTHD DCAGCCAATVR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 wwAAATAATAtw Reverse Complement Reverse Complement Forward 2 11 0.0358988 Consensus sequence (original motif): HDAAATAATADD Consensus sequence (reverse complement motif): DDTATTATTTDH Alignment: DDTATTATTTDH -MBATTGGCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 16 kcACCTGCAgc Reverse Complement Original Motif Backward 1 11 0.0360892 Consensus sequence (original motif): BCACCTGCABC Consensus sequence (reverse complement motif): GBTGCAGGTGB Alignment: BCACCTGCABC MBATTGGCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 5 TFF11 Reverse Complement Original Motif Backward 2 11 0.0376063 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GGMGGRGGCGGVGC --MBATTGGCTGH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 16 Motif name: kcACCTGCAgc Consensus sequence (original motif): BCACCTGCABC Consensus sequence (reverse complement motif): GBTGCAGGTGB ************************************************************************ Best Matches for Motif ID 16 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 19 wsTACwGTAsw Original Motif Reverse Complement Backward 1 11 0.0182895 Consensus sequence (original motif): HVTACWGTABD Consensus sequence (reverse complement motif): DBTACWGTAVH Alignment: DBTACWGTAVH BCACCTGCABC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 20 dhACATTCTkh Original Motif Original Motif Backward 1 11 0.0221745 Consensus sequence (original motif): DHACATTCTGH Consensus sequence (reverse complement motif): HCAGAATGTHD Alignment: DHACATTCTGH BCACCTGCABC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 18 sSGTCACGTGACSs Original Motif Original Motif Forward 4 11 0.0280991 Consensus sequence (original motif): SGGTCACGTGACCS Consensus sequence (reverse complement motif): SGGTCACGTGACCS Alignment: SGGTCACGTGACCS ---BCACCTGCABC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 5 TFF11 Reverse Complement Original Motif Backward 4 11 0.0312321 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GGMGGRGGCGGVGC GBTGCAGGTGB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 12 csGCCCCGCCCCsc Original Motif Original Motif Forward 2 11 0.0370129 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: HVGCCCCGCCCCBB -BCACCTGCABC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 17 Motif name: wwAAATAATAtw Consensus sequence (original motif): HDAAATAATADD Consensus sequence (reverse complement motif): DDTATTATTTDH ************************************************************************ Best Matches for Motif ID 17 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 13 tkAAATAATAtw Original Motif Original Motif Forward 1 12 0 Consensus sequence (original motif): HDAAATAATAHW Consensus sequence (reverse complement motif): WHTATTATTTDH Alignment: HDAAATAATAHW HDAAATAATADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 TFM1 Original Motif Reverse Complement Forward 7 12 0.0565705 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW Alignment: ABAAAAAAWHAAAAARAW ------HDAAATAATADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 11 TFM11 Original Motif Original Motif Forward 3 12 0.0575935 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: HDWVAAAHAAAAAMAAAMWWWHBWA --HDAAATAATADD----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 TFM13 Reverse Complement Original Motif Backward 1 12 0.0712963 Consensus sequence (original motif): ATKAAWTTTTRMAABAHHTW Consensus sequence (reverse complement motif): WAHHTVTTYKAAAAWTTRAT Alignment: ATKAAWTTTTRMAABAHHTW --------DDTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 TFM3 Original Motif Reverse Complement Backward 1 12 0.0733516 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW Alignment: TWAAWTTVTGAAAAAHWW ------HDAAATAATADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 18 Motif name: sSGTCACGTGACSs Consensus sequence (original motif): SGGTCACGTGACCS Consensus sequence (reverse complement motif): SGGTCACGTGACCS ************************************************************************ Best Matches for Motif ID 18 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 12 csGCCCCGCCCCsc Original Motif Reverse Complement Forward 1 14 0.0539097 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: BBGGGGCGGGGCVD SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 14 cccGCCCCGCCCCsb Reverse Complement Original Motif Forward 1 14 0.0581955 Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB Alignment: BCCGCCCCGCCCCBB SGGTCACGTGACCS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 5 TFF11 Reverse Complement Reverse Complement Backward 3 12 1.05855 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: --GCVCCGCCMCCYCC SGGTCACGTGACCS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 TFF1 Reverse Complement Original Motif Backward 1 12 1.06047 Consensus sequence (original motif): CGGVGCCGCVGC Consensus sequence (reverse complement motif): GCVGCGGCBCCG Alignment: --CGGVGCCGCVGC SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 16 kcACCTGCAgc Original Motif Original Motif Backward 1 11 1.54742 Consensus sequence (original motif): BCACCTGCABC Consensus sequence (reverse complement motif): GBTGCAGGTGB Alignment: ---BCACCTGCABC SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 19 Motif name: wsTACwGTAsw Consensus sequence (original motif): HVTACWGTABD Consensus sequence (reverse complement motif): DBTACWGTAVH ************************************************************************ Best Matches for Motif ID 19 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 16 kcACCTGCAgc Original Motif Reverse Complement Backward 1 11 0.0199592 Consensus sequence (original motif): BCACCTGCABC Consensus sequence (reverse complement motif): GBTGCAGGTGB Alignment: GBTGCAGGTGB HVTACWGTABD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 wwAAATAATAtw Original Motif Reverse Complement Backward 1 11 0.0309343 Consensus sequence (original motif): HDAAATAATADD Consensus sequence (reverse complement motif): DDTATTATTTDH Alignment: DDTATTATTTDH -HVTACWGTABD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 13 tkAAATAATAtw Reverse Complement Original Motif Forward 1 11 0.0337121 Consensus sequence (original motif): HDAAATAATAHW Consensus sequence (reverse complement motif): WHTATTATTTDH Alignment: HDAAATAATAHW DBTACWGTAVH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 21 wbgTAAATAww Reverse Complement Original Motif Backward 1 11 0.037518 Consensus sequence (original motif): DBGTAAATAHD Consensus sequence (reverse complement motif): DHTATTTACBD Alignment: DBGTAAATAHD DBTACWGTAVH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 TFM3 Reverse Complement Original Motif Backward 5 11 0.0413797 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW Alignment: WWHTTTTTCABAAWTTWA ---DBTACWGTAVH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 20 Motif name: dhACATTCTkh Consensus sequence (original motif): DHACATTCTGH Consensus sequence (reverse complement motif): HCAGAATGTHD ************************************************************************ Best Matches for Motif ID 20 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 TFM3 Reverse Complement Original Motif Backward 8 11 0.00522383 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW Alignment: WWHTTTTTCABAAWTTWA HCAGAATGTHD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 16 kcACCTGCAgc Original Motif Original Motif Backward 1 11 0.00731643 Consensus sequence (original motif): BCACCTGCABC Consensus sequence (reverse complement motif): GBTGCAGGTGB Alignment: BCACCTGCABC DHACATTCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 wwAAATAATAtw Reverse Complement Reverse Complement Forward 2 11 0.0127231 Consensus sequence (original motif): HDAAATAATADD Consensus sequence (reverse complement motif): DDTATTATTTDH Alignment: DDTATTATTTDH -HCAGAATGTHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 11 TFM11 Reverse Complement Original Motif Forward 5 11 0.014258 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: HDWVAAAHAAAAAMAAAMWWWHBWA ----HCAGAATGTHD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 TFM13 Original Motif Original Motif Backward 9 11 0.0192045 Consensus sequence (original motif): ATKAAWTTTTRMAABAHHTW Consensus sequence (reverse complement motif): WAHHTVTTYKAAAAWTTRAT Alignment: ATKAAWTTTTRMAABAHHTW -DHACATTCTGH-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 21 Motif name: wbgTAAATAww Consensus sequence (original motif): DBGTAAATAHD Consensus sequence (reverse complement motif): DHTATTTACBD ************************************************************************ Best Matches for Motif ID 21 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 13 tkAAATAATAtw Original Motif Original Motif Backward 1 11 0.0162338 Consensus sequence (original motif): HDAAATAATAHW Consensus sequence (reverse complement motif): WHTATTATTTDH Alignment: HDAAATAATAHW -DBGTAAATAHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 wwAAATAATAtw Reverse Complement Reverse Complement Backward 2 11 0.0164863 Consensus sequence (original motif): HDAAATAATADD Consensus sequence (reverse complement motif): DDTATTATTTDH Alignment: DDTATTATTTDH DHTATTTACBD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 11 TFM11 Reverse Complement Reverse Complement Forward 15 11 0.0192768 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: TWVHWWWYTTTYTTTTTHTTTVWBH --------------DHTATTTACBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 TFM1 Reverse Complement Original Motif Forward 1 11 0.0283217 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW Alignment: WTKTTTTTHWTTTTTTBT DHTATTTACBD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 TFM3 Reverse Complement Original Motif Backward 2 11 0.0308097 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW Alignment: WWHTTTTTCABAAWTTWA ------DHTATTTACBD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 06-18-2018 21:47:01 Runtime: 633.592 seconds MOTIFSIM is written by Ngoc Tam L. 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