**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 2 Number of top significant motifs: 10 Number of best matches: 10 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Motif tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # MEME-ChIP_DM721.txt 11 1 PScanChIP_DM721.txt 37 2 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ********************************************************************** Best Matches in Database for Each Motif (Highest to Lowest) ***************************************************************** Dataset #: 1 Motif ID: 1 Motif name: Motif 1 Consensus sequence (original motif): RGGAAR Consensus sequence (reverse complement motif): MTTCCK ************************************************************************ Best Matches for Motif ID 1 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00090 Elf3_primary Reverse Complement Reverse Complement Backward 5 6 0 Species: Mus musculus Consensus sequence (original motif): DAHMMGGAARTDA Consensus sequence (reverse complement motif): TDAMTTCCYYDTD Alignment: TDAMTTCCYYDTD ---MTTCCK---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00085 Sfpi1_primary Original Motif Original Motif Forward 6 6 0.00351709 Species: Mus musculus Consensus sequence (original motif): BDAWGVGGAAGTDH Consensus sequence (reverse complement motif): HDACTTCCBCWTDV Alignment: BDAWGVGGAAGTDH -----RGGAAR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00414 Ets1 Reverse Complement Reverse Complement Forward 5 6 0.00356242 Species: Mus musculus Consensus sequence (original motif): BDDDHACCGGAARTVDD Consensus sequence (reverse complement motif): DDBAMTTCCGGTDHDHB Alignment: DDBAMTTCCGGTDHDHB ----MTTCCK------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00409 Elf5 Original Motif Original Motif Backward 4 6 0.00439981 Species: Mus musculus Consensus sequence (original motif): BWAHSMGGAAGTWD Consensus sequence (reverse complement motif): DWACTTCCRSDTWV Alignment: BWAHSMGGAAGTWD -----RGGAAR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00015 Ehf_primary Reverse Complement Reverse Complement Forward 4 6 0.00655644 Species: Mus musculus Consensus sequence (original motif): VBDABCCGGAAGTDD Consensus sequence (reverse complement motif): DDACTTCCGGBTHBB Alignment: DDACTTCCGGBTHBB ---MTTCCK------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00013 Gabpa_primary Reverse Complement Reverse Complement Forward 6 6 0.00663687 Species: Mus musculus Consensus sequence (original motif): HVHHACCGGAAGTDHHV Consensus sequence (reverse complement motif): BHHHACTTCCGGTHHBD Alignment: BHHHACTTCCGGTHHBD -----MTTCCK------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00413 Elf4 Reverse Complement Original Motif Forward 6 6 0.00896416 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGKWTH Consensus sequence (reverse complement motif): HAWYCCGGAAGTHBBD Alignment: DBBHACTTCCGGKWTH -----MTTCCK----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00419 Spic Original Motif Original Motif Forward 6 6 0.00975526 Species: Mus musculus Consensus sequence (original motif): VAAAGMGGAAGTWD Consensus sequence (reverse complement motif): DWACTTCCRCTTTB Alignment: VAAAGMGGAAGTWD -----RGGAAR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00418 Etv6 Reverse Complement Original Motif Forward 7 6 0.0103447 Species: Mus musculus Consensus sequence (original motif): DVHBTACTTCCGGHTHB Consensus sequence (reverse complement motif): BHAHCCGGAAGTABDVD Alignment: DVHBTACTTCCGGHTHB ------MTTCCK----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00404 Elf2 Reverse Complement Original Motif Forward 6 6 0.010491 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGDWDB Consensus sequence (reverse complement motif): BDWDCCGGAAGTHBBD Alignment: DBBHACTTCCGGDWDB -----MTTCCK----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 2 Motif name: Motif 2 Consensus sequence (original motif): AMACA Consensus sequence (reverse complement motif): TGTRT ************************************************************************ Best Matches for Motif ID 2 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_second Original Motif Original Motif Forward 7 5 0 Species: Mus musculus Consensus sequence (original motif): DVMVGCACACACKCVH Consensus sequence (reverse complement motif): HBGYGTGTGTGCVRVD Alignment: DVMVGCACACACKCVH ------AMACA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_primary Original Motif Original Motif Forward 8 5 0.00605402 Species: Mus musculus Consensus sequence (original motif): DDAATGTAAACAAAVVB Consensus sequence (reverse complement motif): BBVTTTGTTTACATTDD Alignment: DDAATGTAAACAAAVVB -------AMACA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00041 Foxj1_primary Original Motif Original Motif Forward 6 5 0.00753267 Species: Mus musculus Consensus sequence (original motif): HDHRTAAACAAAHDDD Consensus sequence (reverse complement motif): DDDHTTTGTTTAMHDH Alignment: HDHRTAAACAAAHDDD -----AMACA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_primary Original Motif Original Motif Forward 8 5 0.00965634 Species: Mus musculus Consensus sequence (original motif): HDHADGTAAACAAAVVH Consensus sequence (reverse complement motif): DVVTTTGTTTACDTHDH Alignment: HDHADGTAAACAAAVVH -------AMACA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_primary Original Motif Original Motif Backward 6 5 0.00989492 Species: Mus musculus Consensus sequence (original motif): DWAATRTAAACAAWVVB Consensus sequence (reverse complement motif): VVVWTTGTTTAMATTWD Alignment: DWAATRTAAACAAWVVB -------AMACA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00004 Sox14_secondary Reverse Complement Reverse Complement Backward 4 5 0.0116453 Species: Mus musculus Consensus sequence (original motif): BKBASACAATRGHBB Consensus sequence (reverse complement motif): BBDCMATTGTSTBRB Alignment: BBDCMATTGTSTBRB -------TGTRT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_primary Original Motif Original Motif Backward 6 5 0.0143122 Species: Mus musculus Consensus sequence (original motif): HHWAWGTAAAYAAAVDB Consensus sequence (reverse complement motif): BDVTTTKTTTACWTWHH Alignment: HHWAWGTAAAYAAAVDB -------AMACA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00026 Zscan4_secondary Reverse Complement Reverse Complement Forward 6 5 0.0153228 Species: Mus musculus Consensus sequence (original motif): HVHRGCACACAAHHHV Consensus sequence (reverse complement motif): BHHHTTGTGTGCKHVD Alignment: BHHHTTGTGTGCKHVD -----TGTRT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00011 Irf6_primary Reverse Complement Reverse Complement Forward 6 5 0.024195 Species: Mus musculus Consensus sequence (original motif): HDDAHCGAAACYAVDDD Consensus sequence (reverse complement motif): DHDBTKGTTTCGHTHDD Alignment: DHDBTKGTTTCGHTHDD -----TGTRT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_primary Original Motif Original Motif Backward 6 5 0.0255974 Species: Mus musculus Consensus sequence (original motif): HDHDDCCAGACABBHVH Consensus sequence (reverse complement motif): HVHBVTGTCTGGDDHDD Alignment: HDHDDCCAGACABBHVH -------AMACA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 3 Motif name: Motif 3 Consensus sequence (original motif): AGSCWGG Consensus sequence (reverse complement motif): CCWGSCT ************************************************************************ Best Matches for Motif ID 3 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00035 Hic1_primary Original Motif Reverse Complement Backward 7 7 0 Species: Mus musculus Consensus sequence (original motif): DBBATGCCAACCHVHH Consensus sequence (reverse complement motif): DDBHGGTTGGCATVBD Alignment: DDBHGGTTGGCATVBD ---AGSCWGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00070 Gcm1_primary Original Motif Reverse Complement Forward 5 7 0.00560414 Species: Mus musculus Consensus sequence (original motif): HVVHACCCGCATVDHD Consensus sequence (reverse complement motif): DHDVATGCGGGTHVVH Alignment: DHDVATGCGGGTHVVH ----AGSCWGG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00095 Zfp691_secondary Original Motif Reverse Complement Forward 9 7 0.0109149 Species: Mus musculus Consensus sequence (original motif): DABBWGACTCCTHDVHV Consensus sequence (reverse complement motif): VHBDDAGGAGTCWBBTD Alignment: VHBDDAGGAGTCWBBTD --------AGSCWGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00006 Zic3_secondary Reverse Complement Reverse Complement Forward 3 7 0.0109242 Species: Mus musculus Consensus sequence (original motif): DDDCACAGCAKGHVD Consensus sequence (reverse complement motif): DVHCYTGCTGTGHDH Alignment: DVHCYTGCTGTGHDH --CCWGSCT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_primary Reverse Complement Original Motif Forward 6 7 0.0114503 Species: Mus musculus Consensus sequence (original motif): HDHDDCCAGACABBHVH Consensus sequence (reverse complement motif): HVHBVTGTCTGGDDHDD Alignment: HDHDDCCAGACABBHVH -----CCWGSCT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primaryOriginal Motif Reverse Complement Forward 6 7 0.0115258 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: CBDMCMGGGTGGTCCHVBVBAH -----AGSCWGG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primaryReverse Complement Reverse Complement Backward 8 7 0.0117486 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB ---------CCWGSCT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primaryOriginal Motif Reverse Complement Forward 6 7 0.0131676 Species: Mus musculus Consensus sequence (original motif): HDGHHBHRGACCACCCGSVDVG Consensus sequence (reverse complement motif): CVHBSCGGGTGGTCMHVHHCDH Alignment: CVHBSCGGGTGGTCMHVHHCDH -----AGSCWGG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00081 Mybl1_secondary Original Motif Reverse Complement Backward 7 7 0.0136026 Species: Mus musculus Consensus sequence (original motif): BBVCCAACTGCCGHB Consensus sequence (reverse complement motif): BHCGGCAGTTGGBBB Alignment: BHCGGCAGTTGGBBB --AGSCWGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_secondary Reverse Complement Reverse Complement Backward 7 7 0.0139558 Species: Mus musculus Consensus sequence (original motif): HHDCVCAGCAKGVVD Consensus sequence (reverse complement motif): DVBCYTGCTGBGDDD Alignment: DVBCYTGCTGBGDDD --CCWGSCT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 4 Motif name: Motif 4 Consensus sequence (original motif): CTCTGY Consensus sequence (reverse complement motif): KCAGAG ************************************************************************ Best Matches for Motif ID 4 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_primary Reverse Complement Reverse Complement Forward 7 6 0 Species: Mus musculus Consensus sequence (original motif): DDBBBCACTGCABTBBB Consensus sequence (reverse complement motif): BBBAVTGCAGTGBBVDD Alignment: BBBAVTGCAGTGBBVDD ------KCAGAG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00018 Irf4_secondary Reverse Complement Reverse Complement Backward 7 6 0.00610915 Species: Mus musculus Consensus sequence (original motif): VVBAYTCTCGGWHDB Consensus sequence (reverse complement motif): BHHWCCGAGAMTVVB Alignment: BHHWCCGAGAMTVVB ---KCAGAG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00095 Zfp691_secondary Reverse Complement Reverse Complement Forward 5 6 0.00648219 Species: Mus musculus Consensus sequence (original motif): DABBWGACTCCTHDVHV Consensus sequence (reverse complement motif): VHBDDAGGAGTCWBBTD Alignment: VHBDDAGGAGTCWBBTD ----KCAGAG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00006 Zic3_secondary Reverse Complement Original Motif Backward 8 6 0.00853125 Species: Mus musculus Consensus sequence (original motif): DDDCACAGCAKGHVD Consensus sequence (reverse complement motif): DVHCYTGCTGTGHDH Alignment: DDDCACAGCAKGHVD --KCAGAG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_secondary Original Motif Reverse Complement Backward 2 6 0.00895004 Species: Mus musculus Consensus sequence (original motif): BBHBGAGTGGGAHHDB Consensus sequence (reverse complement motif): BHHDTCCCACTCBDBV Alignment: BHHDTCCCACTCBDBV ---------CTCTGY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00095 Zfp691_primary Original Motif Reverse Complement Forward 9 6 0.00955889 Species: Mus musculus Consensus sequence (original motif): BDHVCAGTGCTCMBHDD Consensus sequence (reverse complement motif): DDHBYGAGCACTGBHHB Alignment: DDHBYGAGCACTGBHHB --------CTCTGY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Reverse Complement Reverse Complement Backward 6 6 0.0106184 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD ------KCAGAG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00102 Zic1_secondary Reverse Complement Original Motif Backward 8 6 0.0122635 Species: Mus musculus Consensus sequence (original motif): BHDCVCAGCAGGHVD Consensus sequence (reverse complement motif): DVHCCTGCTGBGDDB Alignment: BHDCVCAGCAGGHVD --KCAGAG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00083 Tcf7l2_primary Reverse Complement Reverse Complement Backward 6 6 0.0131237 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATSTDDV Consensus sequence (reverse complement motif): BDDASATCAAAGGMDDD Alignment: BDDASATCAAAGGMDDD ------KCAGAG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_secondary Reverse Complement Original Motif Forward 3 6 0.0136526 Species: Mus musculus Consensus sequence (original motif): HHDCVCAGCAKGVVD Consensus sequence (reverse complement motif): DVBCYTGCTGBGDDD Alignment: HHDCVCAGCAKGVVD --KCAGAG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 5 Motif name: Motif 5 Consensus sequence (original motif): ATKTM Consensus sequence (reverse complement motif): RARAT ************************************************************************ Best Matches for Motif ID 5 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00080 Gata5_secondary Reverse Complement Original Motif Backward 9 5 0 Species: Mus musculus Consensus sequence (original motif): VVBHRAGATATCWDHBB Consensus sequence (reverse complement motif): VVHHWGATATCTMHBBV Alignment: VVBHRAGATATCWDHBB ----RARAT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00148 Hdx Reverse Complement Original Motif Backward 8 5 0.00279496 Species: Mus musculus Consensus sequence (original motif): DDKDHGAAATCAHHBHV Consensus sequence (reverse complement motif): BDBDHTGATTTCDHYDD Alignment: DDKDHGAAATCAHHBHV -----RARAT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Reverse Complement Original Motif Backward 12 5 0.00967655 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: BDHDDADAGATAAGADHBDHVD ------RARAT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00250 Irx5 Original Motif Original Motif Backward 6 5 0.0116566 Species: Mus musculus Consensus sequence (original motif): DDDHWACATGTWHDABW Consensus sequence (reverse complement motif): WVTDHWACATGTWHDDD Alignment: DDDHWACATGTWHDABW -------ATKTM----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00236 Irx2 Original Motif Original Motif Backward 6 5 0.0120196 Species: Mus musculus Consensus sequence (original motif): WDDDTACATGTADDWBW Consensus sequence (reverse complement motif): WVWDDTACATGTADDDW Alignment: WDDDTACATGTADDWBW -------ATKTM----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00150 Irx6 Original Motif Original Motif Forward 8 5 0.0120601 Species: Mus musculus Consensus sequence (original motif): HAHDTACATGTAVDWHT Consensus sequence (reverse complement motif): AHWDBTACATGTADHTH Alignment: HAHDTACATGTAVDWHT -------ATKTM----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00223 Irx3_2226.1 Original Motif Original Motif Forward 8 5 0.0124884 Species: Mus musculus Consensus sequence (original motif): DDDHTACATGTAVWDHD Consensus sequence (reverse complement motif): DHDWBTACATGTAHDDD Alignment: DDDHTACATGTAVWDHD -------ATKTM----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_primary Original Motif Original Motif Forward 10 5 0.0150044 Species: Mus musculus Consensus sequence (original motif): DVDDATGGGATGKMDDV Consensus sequence (reverse complement motif): BDDYYCATCCCATDDBD Alignment: DVDDATGGGATGKMDDV ---------ATKTM--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00223 Irx3_0920.1 Original Motif Original Motif Backward 6 5 0.0150192 Species: Mus musculus Consensus sequence (original motif): DDDDTACATGTAVWWHD Consensus sequence (reverse complement motif): DDWWBTACATGTADDDD Alignment: DDDDTACATGTAVWWHD -------ATKTM----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Reverse Complement Original Motif Backward 12 5 0.0166075 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: MWSMBAARRATGCDCABHATGD ------RARAT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 6 Motif name: Motif 6 Consensus sequence (original motif): CMGCRGC Consensus sequence (reverse complement motif): GCKGCYG ************************************************************************ Best Matches for Motif ID 6 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00052 Osr2_primary Reverse Complement Reverse Complement Forward 5 7 0 Species: Mus musculus Consensus sequence (original motif): HHVHACRGTAGCHHHD Consensus sequence (reverse complement motif): HHHHGCTACKGTHVHH Alignment: HHHHGCTACKGTHVHH ----GCKGCYG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00027 Osr1_primary Reverse Complement Reverse Complement Backward 6 7 0.00108105 Species: Mus musculus Consensus sequence (original motif): HHDHACRGTAGCHVHD Consensus sequence (reverse complement motif): DHBHGCTACKGTHDHH Alignment: DHBHGCTACKGTHDHH ----GCKGCYG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_primary Reverse Complement Original Motif Forward 8 7 0.00905497 Species: Mus musculus Consensus sequence (original motif): BBYVVCAGCTGCBVHHD Consensus sequence (reverse complement motif): HHDVVGCAGCTGVBKVB Alignment: BBYVVCAGCTGCBVHHD -------GCKGCYG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00102 Zic1_secondary Original Motif Original Motif Backward 4 7 0.0111061 Species: Mus musculus Consensus sequence (original motif): BHDCVCAGCAGGHVD Consensus sequence (reverse complement motif): DVHCCTGCTGBGDDB Alignment: BHDCVCAGCAGGHVD -----CMGCRGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_secondary Original Motif Original Motif Forward 6 7 0.0126897 Species: Mus musculus Consensus sequence (original motif): HHDCVCAGCAKGVVD Consensus sequence (reverse complement motif): DVBCYTGCTGBGDDD Alignment: HHDCVCAGCAKGVVD -----CMGCRGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00006 Zic3_secondary Reverse Complement Reverse Complement Backward 6 7 0.0137402 Species: Mus musculus Consensus sequence (original motif): DDDCACAGCAKGHVD Consensus sequence (reverse complement motif): DVHCYTGCTGTGHDH Alignment: DVHCYTGCTGTGHDH ---GCKGCYG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00045 Mafb_primary Original Motif Reverse Complement Backward 4 7 0.0253076 Species: Mus musculus Consensus sequence (original motif): HAAWDTGCTGACDWARH Consensus sequence (reverse complement motif): DMTWDGTCAGCADWTTH Alignment: DMTWDGTCAGCADWTTH -------CMGCRGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00193 Rhox11_1765.2 Original Motif Reverse Complement Forward 9 7 0.0292668 Species: Mus musculus Consensus sequence (original motif): AVDVCGCTGTWAWDVVW Consensus sequence (reverse complement motif): WVVHWTWACAGCGBHBT Alignment: WVVHWTWACAGCGBHBT --------CMGCRGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00193 Rhox11_2205.1 Original Motif Reverse Complement Backward 3 7 0.0298083 Species: Mus musculus Consensus sequence (original motif): AVDHCGCTGTWAWDVVW Consensus sequence (reverse complement motif): WVVHWTWACAGCGHHVT Alignment: WVVHWTWACAGCGHHVT --------CMGCRGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00122 Tgif1 Original Motif Original Motif Backward 3 7 0.0332976 Species: Mus musculus Consensus sequence (original motif): DABWWTGACAGCTVVBD Consensus sequence (reverse complement motif): DBVVAGCTGTCAWWVTH Alignment: DABWWTGACAGCTVVBD --------CMGCRGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 7 Motif name: Motif 7 Consensus sequence (original motif): CCCRCCCC Consensus sequence (reverse complement motif): GGGGMGGG ************************************************************************ Best Matches for Motif ID 7 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Reverse Complement Reverse Complement Forward 4 8 0 Species: Mus musculus Consensus sequence (original motif): HBDRCCMCGCCCHHHD Consensus sequence (reverse complement motif): DHHDGGGCGRGGKHBH Alignment: DHHDGGGCGRGGKHBH ---GGGGMGGG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Reverse Complement Reverse Complement Forward 7 8 0.00490878 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BVVHAGGGGGCGRDHHB ------GGGGMGGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Original Motif Original Motif Forward 1 8 0.0101441 Species: Mus musculus Consensus sequence (original motif): HCCGCCCCCGCAHB Consensus sequence (reverse complement motif): VHTGCGGGGGCGGH Alignment: HCCGCCCCCGCAHB CCCRCCCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Original Motif Original Motif Forward 4 8 0.0106908 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: DBCCCCCCCCCCMYC ---CCCRCCCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_secondary Original Motif Original Motif Forward 4 8 0.0152681 Species: Mus musculus Consensus sequence (original motif): HBBBCCGCCCCWHHHV Consensus sequence (reverse complement motif): BHHHWGGGGCGGBBVH Alignment: HBBBCCGCCCCWHHHV ---CCCRCCCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondaryOriginal Motif Original Motif Forward 9 8 0.0252184 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH --------CCCRCCCC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Original Motif Original Motif Backward 7 8 0.0258528 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: HVBCCCCCCCCMHHHB --CCCRCCCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_secondary Original Motif Reverse Complement Forward 6 8 0.0318239 Species: Mus musculus Consensus sequence (original motif): BBHBGAGTGGGAHHDB Consensus sequence (reverse complement motif): BHHDTCCCACTCBDBV Alignment: BHHDTCCCACTCBDBV -----CCCRCCCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primaryOriginal Motif Reverse Complement Backward 8 8 0.0333599 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB --------CCCRCCCC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondary Reverse Complement Reverse Complement Forward 6 8 0.0336185 Species: Mus musculus Consensus sequence (original motif): BHHBHCCGCCCCDHHHH Consensus sequence (reverse complement motif): HHHHDGGGGCGGDBHDV Alignment: HHHHDGGGGCGGDBHDV -----GGGGMGGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 8 Motif name: Motif 8 Consensus sequence (original motif): CTGGGA Consensus sequence (reverse complement motif): TCCCAG ************************************************************************ Best Matches for Motif ID 8 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_primary Original Motif Original Motif Backward 8 6 0 Species: Mus musculus Consensus sequence (original motif): DVDDATGGGATGKMDDV Consensus sequence (reverse complement motif): BDDYYCATCCCATDDBD Alignment: DVDDATGGGATGKMDDV ----CTGGGA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00216 Obox1 Reverse Complement Reverse Complement Forward 9 6 0.000600574 Species: Mus musculus Consensus sequence (original motif): DDARGGGGATTAACDHH Consensus sequence (reverse complement motif): DHDGTTAATCCCCKTDD Alignment: DHDGTTAATCCCCKTDD --------TCCCAG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00229 Otx1 Reverse Complement Reverse Complement Forward 10 6 0.0140775 Species: Mus musculus Consensus sequence (original motif): DDDRGGGATTAATWHHB Consensus sequence (reverse complement motif): VHHWATTAATCCCMDHH Alignment: VHHWATTAATCCCMDHH ---------TCCCAG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00160 Obox3 Reverse Complement Reverse Complement Forward 9 6 0.0142192 Species: Mus musculus Consensus sequence (original motif): HBVGGGGGATTAACWHH Consensus sequence (reverse complement motif): HHWGTTAATCCCCCBBH Alignment: HHWGTTAATCCCCCBBH --------TCCCAG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00239 Obox2 Reverse Complement Reverse Complement Backward 4 6 0.0184594 Species: Mus musculus Consensus sequence (original motif): DBRGGGGGATTAAMTAH Consensus sequence (reverse complement motif): HTARTTAATCCCCCKBD Alignment: HTARTTAATCCCCCKBD --------TCCCAG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00416 Fli1 Original Motif Reverse Complement Backward 7 6 0.018604 Species: Mus musculus Consensus sequence (original motif): VBBVAYTTCCGGTDDH Consensus sequence (reverse complement motif): DHDACCGGAAKTBBVV Alignment: DHDACCGGAAKTBBVV ----CTGGGA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00411 Erg Original Motif Reverse Complement Backward 7 6 0.0196433 Species: Mus musculus Consensus sequence (original motif): VBBVAYTTCCGGTDDB Consensus sequence (reverse complement motif): BDDACCGGAAKTVBVB Alignment: BDDACCGGAAKTVBVB ----CTGGGA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00413 Elf4 Original Motif Reverse Complement Forward 5 6 0.0196806 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGKWTH Consensus sequence (reverse complement motif): HAWYCCGGAAGTHBBD Alignment: HAWYCCGGAAGTHBBD ----CTGGGA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00143 Dobox5 Original Motif Original Motif Backward 10 6 0.0199632 Species: Mus musculus Consensus sequence (original motif): DDHVGGGATTAATHDTH Consensus sequence (reverse complement motif): DADHATTAATCCCBHHH Alignment: DDHVGGGATTAATHDTH --CTGGGA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00265 Pitx3 Reverse Complement Reverse Complement Forward 10 6 0.0210625 Species: Mus musculus Consensus sequence (original motif): VGGGGGATTAGCDDBC Consensus sequence (reverse complement motif): GBHDGCTAATCCCCCB Alignment: GBHDGCTAATCCCCCB ---------TCCCAG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 9 Motif name: Motif 9 Consensus sequence (original motif): CACACAVRCACACA Consensus sequence (reverse complement motif): TGTGTGKVTGTGTG ************************************************************************ Best Matches for Motif ID 9 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryOriginal Motif Original Motif Backward 9 14 0.0487588 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH -CACACAVRCACACA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_second Reverse Complement Reverse Complement Backward 2 14 0.0496974 Species: Mus musculus Consensus sequence (original motif): DVMVGCACACACKCVH Consensus sequence (reverse complement motif): HBGYGTGTGTGCVRVD Alignment: HBGYGTGTGTGCVRVD -TGTGTGKVTGTGTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryReverse Complement Original Motif Backward 10 14 0.0503392 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB TGTGTGKVTGTGTG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_secondary Reverse Complement Reverse Complement Backward 1 14 0.0506792 Species: Mus musculus Consensus sequence (original motif): HHHAYAAYAACAHHH Consensus sequence (reverse complement motif): HDDTGTTKTTKTHHD Alignment: HDDTGTTKTTKTHHD -TGTGTGKVTGTGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00036 Myf6_secondary Original Motif Original Motif Forward 2 14 0.0516113 Species: Mus musculus Consensus sequence (original motif): VVVRACAGVCBCDCC Consensus sequence (reverse complement motif): GGDGBGVCTGTKVVB Alignment: VVVRACAGVCBCDCC -CACACAVRCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Original Motif Reverse Complement Forward 1 14 0.0523703 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC CACACAVRCACACA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00026 Zscan4_primary Original Motif Original Motif Forward 1 14 0.0557355 Species: Mus musculus Consensus sequence (original motif): DHVDTGTGCACAYAHDH Consensus sequence (reverse complement motif): HDHTMTGTGCACADVHD Alignment: DHVDTGTGCACAYAHDH CACACAVRCACACA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondary Original Motif Original Motif Forward 2 14 0.0578572 Species: Mus musculus Consensus sequence (original motif): DDRMHBACGCGYGCGTDGBBDB Consensus sequence (reverse complement motif): BDVBCDACGCKCGCGTBHRKHD Alignment: DDRMHBACGCGYGCGTDGBBDB -CACACAVRCACACA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Reverse Complement Backward 4 14 0.0580046 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB ------TGTGTGKVTGTGTG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00014 Sox17_secondary Reverse Complement Reverse Complement Backward 2 14 0.0581238 Species: Mus musculus Consensus sequence (original motif): VHBHHCATTCATRHVDD Consensus sequence (reverse complement motif): DDBDKATGAATGHDBHV Alignment: DDBDKATGAATGHDBHV --TGTGTGKVTGTGTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 10 Motif name: Motif 10 Consensus sequence (original motif): TKKTTTGTTTTTTT Consensus sequence (reverse complement motif): AAAAAAACAAARRA ************************************************************************ Best Matches for Motif ID 10 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_secondary Original Motif Reverse Complement Backward 3 14 0.0319341 Species: Mus musculus Consensus sequence (original motif): ADDDYAWAACAAMAHH Consensus sequence (reverse complement motif): HDTYTTGTTWTKDDDT Alignment: HDTYTTGTTWTKDDDT TKKTTTGTTTTTTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Reverse Complement Original Motif Backward 4 14 0.0368361 Species: Mus musculus Consensus sequence (original motif): HBDDDAACAAAGRVBHH Consensus sequence (reverse complement motif): HHBBMCTTTGTTHDDBH Alignment: HBDDDAACAAAGRVBHH AAAAAAACAAARRA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Reverse Complement Original Motif Forward 1 14 0.0370295 Species: Mus musculus Consensus sequence (original motif): HBDDRAACAAAGRABHH Consensus sequence (reverse complement motif): HHBTMCTTTGTTMDDVH Alignment: HBDDRAACAAAGRABHH AAAAAAACAAARRA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_secondary Original Motif Reverse Complement Backward 3 14 0.038882 Species: Mus musculus Consensus sequence (original motif): VBDDAAAAAAAAMVBHH Consensus sequence (reverse complement motif): HHVBYTTTTTTTTDDVV Alignment: HHVBYTTTTTTTTDDVV -TKKTTTGTTTTTTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00101 Sox12_secondary Reverse Complement Original Motif Forward 1 14 0.0402601 Species: Mus musculus Consensus sequence (original motif): VVDBASACAAAGRADH Consensus sequence (reverse complement motif): HDTMCTTTGTSTVDBB Alignment: HDTMCTTTGTSTVDBB AAAAAAACAAARRA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_secondary Reverse Complement Original Motif Forward 2 14 0.0402844 Species: Mus musculus Consensus sequence (original motif): VVDAATAACAAAVVB Consensus sequence (reverse complement motif): BVVTTTGTTATTDBB Alignment: VVDAATAACAAAVVB -AAAAAAACAAARRA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Reverse Complement Original Motif Backward 7 14 0.0409353 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: HHBDHDDAACAATDRHHHHHBW --AAAAAAACAAARRA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_secondary Original Motif Reverse Complement Backward 1 14 0.0416172 Species: Mus musculus Consensus sequence (original motif): HHHAYAAYAACAHHH Consensus sequence (reverse complement motif): HDDTGTTKTTKTHHD Alignment: HHHAYAAYAACAHHH -TKKTTTGTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_primary Reverse Complement Original Motif Backward 1 14 0.0419017 Species: Mus musculus Consensus sequence (original motif): HDHADGTAAACAAAVVH Consensus sequence (reverse complement motif): DVVTTTGTTTACDTHDH Alignment: HDHADGTAAACAAAVVH ---AAAAAAACAAARRA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_primary Reverse Complement Original Motif Backward 1 14 0.0439168 Species: Mus musculus Consensus sequence (original motif): HHWAWGTAAAYAAAVDB Consensus sequence (reverse complement motif): BDVTTTKTTTACWTWHH Alignment: HHWAWGTAAAYAAAVDB ---AAAAAAACAAARRA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 11 Motif name: Motif 11 Consensus sequence (original motif): CAYACACACACACA Consensus sequence (reverse complement motif): TGTGTGTGTGTKTG ************************************************************************ Best Matches for Motif ID 11 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_second Original Motif Original Motif Backward 2 14 0.0235042 Species: Mus musculus Consensus sequence (original motif): DVMVGCACACACKCVH Consensus sequence (reverse complement motif): HBGYGTGTGTGCVRVD Alignment: DVMVGCACACACKCVH -CAYACACACACACA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00026 Zscan4_secondary Reverse Complement Reverse Complement Forward 2 14 0.0372612 Species: Mus musculus Consensus sequence (original motif): HVHRGCACACAAHHHV Consensus sequence (reverse complement motif): BHHHTTGTGTGCKHVD Alignment: BHHHTTGTGTGCKHVD -TGTGTGTGTGTKTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_primary Reverse Complement Reverse Complement Forward 4 14 0.0446373 Species: Mus musculus Consensus sequence (original motif): HDHDDCCAGACABBHVH Consensus sequence (reverse complement motif): HVHBVTGTCTGGDDHDD Alignment: HVHBVTGTCTGGDDHDD ---TGTGTGTGTGTKTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Original Motif Forward 4 14 0.0457169 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: BADHBDHCGCCCMCGCAHHDBBV ---CAYACACACACACA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Original Motif Reverse Complement Forward 1 14 0.0477221 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: GTVBDAATTGTVTGHGDDHKVB CAYACACACACACA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_secondary Reverse Complement Reverse Complement Backward 1 14 0.0485483 Species: Mus musculus Consensus sequence (original motif): HHHAYAAYAACAHHH Consensus sequence (reverse complement motif): HDDTGTTKTTKTHHD Alignment: HDDTGTTKTTKTHHD -TGTGTGTGTGTKTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00041 Foxj1_primary Original Motif Original Motif Backward 3 14 0.0488633 Species: Mus musculus Consensus sequence (original motif): HDHRTAAACAAAHDDD Consensus sequence (reverse complement motif): DDDHTTTGTTTAMHDH Alignment: HDHRTAAACAAAHDDD CAYACACACACACA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00026 Zscan4_primary Original Motif Original Motif Backward 2 14 0.0489596 Species: Mus musculus Consensus sequence (original motif): DHVDTGTGCACAYAHDH Consensus sequence (reverse complement motif): HDHTMTGTGCACADVHD Alignment: DHVDTGTGCACAYAHDH --CAYACACACACACA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryReverse Complement Original Motif Backward 10 14 0.0501133 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB TGTGTGTGTGTKTG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_primary Original Motif Original Motif Backward 2 14 0.0518949 Species: Mus musculus Consensus sequence (original motif): DDAATGTAAACAAAVVB Consensus sequence (reverse complement motif): BBVTTTGTTTACATTDD Alignment: DDAATGTAAACAAAVVB --CAYACACACACACA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 12 Motif name: Zfx Consensus sequence (original motif): BBVGCCBVGGCCTV Consensus sequence (reverse complement motif): VAGGCCBBGGCVBB ************************************************************************ Best Matches for Motif ID 12 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_secondary Original Motif Original Motif Forward 1 14 0.0596136 Species: Mus musculus Consensus sequence (original motif): HHRCCBBWGGDCDB Consensus sequence (reverse complement motif): BDGHCCWBVGGKDH Alignment: HHRCCBBWGGDCDB BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primaryOriginal Motif Original Motif Forward 1 14 0.0603516 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: ABBBBVVRGACCACCCACRDBBM BBVGCCBVGGCCTV--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Reverse Complement Original Motif Forward 4 14 0.0604694 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BDHHMCGCCCCCTHVBB ---VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Original Motif Backward 3 14 0.0606067 Species: Mus musculus Consensus sequence (original motif): HBDRCCMCGCCCHHHD Consensus sequence (reverse complement motif): DHHDGGGCGRGGKHBH Alignment: HBDRCCMCGCCCHHHD BBVGCCBVGGCCTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondaryReverse Complement Original Motif Forward 9 14 0.0606878 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: HVGVSAGGAGGGTCYHHHHYVH --------VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00087 Tcfap2c_secondary Reverse Complement Reverse Complement Forward 1 14 0.0608063 Species: Mus musculus Consensus sequence (original motif): BHGCCCDAGGGCWD Consensus sequence (reverse complement motif): HWGCCCTDGGGCDB Alignment: HWGCCCTDGGGCDB VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondaryOriginal Motif Original Motif Forward 5 14 0.0615001 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: DVTTVVCVYGGHGGYCHHDMYB ----BBVGCCBVGGCCTV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00010 Tcfap2b_secondary Original Motif Reverse Complement Forward 2 14 0.0624288 Species: Mus musculus Consensus sequence (original motif): DTWGCCKSMGGCRHH Consensus sequence (reverse complement motif): HHKGCCYSRGGCWAD Alignment: HHKGCCYSRGGCWAD -BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00082 Zfp187_secondary Reverse Complement Original Motif Forward 1 14 0.0627664 Species: Mus musculus Consensus sequence (original motif): DDGMCCTBGTCCHYHV Consensus sequence (reverse complement motif): VHMDGGACVAGGRCDH Alignment: DDGMCCTBGTCCHYHV VAGGCCBBGGCVBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_secondary Reverse Complement Reverse Complement Forward 3 14 0.0636529 Species: Mus musculus Consensus sequence (original motif): VBVBCSGGGTCAVBBH Consensus sequence (reverse complement motif): HVBVTGACCCSGBVBV Alignment: HVBVTGACCCSGBVBV --VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 13 Motif name: Zfp423 Consensus sequence (original motif): GSMMCCYARGGKKKC Consensus sequence (reverse complement motif): GYRYCCMTKGGYRSC ************************************************************************ Best Matches for Motif ID 13 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_primary Original Motif Original Motif Backward 1 15 0.0178077 Species: Mus musculus Consensus sequence (original motif): BMCCCCCGGGGGGGB Consensus sequence (reverse complement motif): VCCCCCCCGGGGGRB Alignment: BMCCCCCGGGGGGGB GSMMCCYARGGKKKC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00006 Zic3_primary Original Motif Original Motif Backward 1 15 0.0213948 Species: Mus musculus Consensus sequence (original motif): BMCCCCCGGGGGGGB Consensus sequence (reverse complement motif): VCCCCCCCGGGGGRB Alignment: BMCCCCCGGGGGGGB GSMMCCYARGGKKKC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Reverse Complement Backward 2 15 0.0255241 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH -------GSMMCCYARGGKKKC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00087 Tcfap2c_primary Original Motif Original Motif Forward 1 15 0.0261399 Species: Mus musculus Consensus sequence (original motif): WHHSCCYSRGGSDAD Consensus sequence (reverse complement motif): DTHSCCKSMGGSHHW Alignment: WHHSCCYSRGGSDAD GSMMCCYARGGKKKC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_primary Original Motif Original Motif Backward 1 15 0.0266201 Species: Mus musculus Consensus sequence (original motif): WDHSCCYSRGGSRAD Consensus sequence (reverse complement motif): DTMSCCKSMGGSHDW Alignment: WDHSCCYSRGGSRAD GSMMCCYARGGKKKC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Original Motif Forward 8 15 0.027503 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH -------GSMMCCYARGGKKKC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00220 Nkx1-1 Reverse Complement Original Motif Backward 2 15 0.0276935 Species: Mus musculus Consensus sequence (original motif): WGHRCYAATTRGYGSDV Consensus sequence (reverse complement motif): BHSCMCKAATTMGMDCW Alignment: WGHRCYAATTRGYGSDV -GYRYCCMTKGGYRSC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_primaryOriginal Motif Original Motif Backward 1 15 0.0280481 Species: Mus musculus Consensus sequence (original motif): DTVBDDRGACCACCCAGDWDGBH Consensus sequence (reverse complement motif): DBCDWHCTGGGTGGTCMDHBBAH Alignment: DTVBDDRGACCACCCAGDWDGBH --------GSMMCCYARGGKKKC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primaryOriginal Motif Reverse Complement Forward 9 15 0.0288797 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB --------GSMMCCYARGGKKKC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00028 Tcfap2e_primary Original Motif Original Motif Forward 1 15 0.029693 Species: Mus musculus Consensus sequence (original motif): HHHGCCTSAGGCDAD Consensus sequence (reverse complement motif): DTHGCCTSAGGCHHH Alignment: HHHGCCTSAGGCDAD GSMMCCYARGGKKKC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 14 Motif name: ZEB1 Consensus sequence (original motif): CACCTD Consensus sequence (reverse complement motif): HAGGTG ************************************************************************ Best Matches for Motif ID 14 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00068 Eomes_secondary Original Motif Reverse Complement Backward 4 6 0 Species: Mus musculus Consensus sequence (original motif): VBVDAGGTGTYGVBBV Consensus sequence (reverse complement motif): VVBVCKACACCTHVBV Alignment: VVBVCKACACCTHVBV -------CACCTD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00199 Six4 Reverse Complement Reverse Complement Forward 4 6 0.00433068 Species: Mus musculus Consensus sequence (original motif): ADDHATGACACCBHBBV Consensus sequence (reverse complement motif): BBVHVGGTGTCATHDDT Alignment: BBVHVGGTGTCATHDDT ---HAGGTG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00068 Eomes_primary Original Motif Reverse Complement Forward 9 6 0.00524081 Species: Mus musculus Consensus sequence (original motif): BVHDAGGTGTGAAAHHH Consensus sequence (reverse complement motif): HHHTTTCACACCTDHBV Alignment: HHHTTTCACACCTDHBV --------CACCTD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Original Motif Reverse Complement Forward 7 6 0.00911301 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: DHDBHGCACCTGBDDVB ------CACCTD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00047 Zbtb7b_secondary Original Motif Original Motif Backward 4 6 0.0233556 Species: Mus musculus Consensus sequence (original motif): BDDRVGACCACCHBDVB Consensus sequence (reverse complement motif): BBDVHGGTGGTCBKDDB Alignment: BDDRVGACCACCHBDVB --------CACCTD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primaryReverse Complement Original Motif Backward 11 6 0.0233928 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH -------HAGGTG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primaryOriginal Motif Original Motif Backward 6 6 0.0254338 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: HTBVVVDGGACCACCCRGRDBG -----------CACCTD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primaryOriginal Motif Original Motif Backward 6 6 0.0290143 Species: Mus musculus Consensus sequence (original motif): HDGHHBHRGACCACCCGSVDVG Consensus sequence (reverse complement motif): CVHBSCGGGTGGTCMHVHHCDH Alignment: HDGHHBHRGACCACCCGSVDVG -----------CACCTD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00036 Myf6_primary Reverse Complement Original Motif Backward 5 6 0.0309673 Species: Mus musculus Consensus sequence (original motif): VVDBAACAGBTGBYHB Consensus sequence (reverse complement motif): BDKVCABCTGTTBDBV Alignment: VVDBAACAGBTGBYHB ------HAGGTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00249 Nkx2-5 Original Motif Original Motif Forward 6 6 0.031502 Species: Mus musculus Consensus sequence (original motif): HDADCCACTTRAAWTT Consensus sequence (reverse complement motif): AAWTTMAAGTGGHTDH Alignment: HDADCCACTTRAAWTT -----CACCTD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 15 Motif name: TFAP2A Consensus sequence (original motif): GCCBBVRGS Consensus sequence (reverse complement motif): SCMVBBGGC ************************************************************************ Best Matches for Motif ID 15 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00010 Tcfap2b_secondary Original Motif Reverse Complement Forward 4 9 0.0115546 Species: Mus musculus Consensus sequence (original motif): DTWGCCKSMGGCRHH Consensus sequence (reverse complement motif): HHKGCCYSRGGCWAD Alignment: HHKGCCYSRGGCWAD ---GCCBBVRGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00010 Tcfap2b_primary Original Motif Original Motif Forward 3 9 0.0150447 Species: Mus musculus Consensus sequence (original motif): DYGCCYBARGGCAH Consensus sequence (reverse complement motif): HTGCCMTVKGGCMD Alignment: DYGCCYBARGGCAH --GCCBBVRGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_primary Original Motif Original Motif Forward 4 9 0.0151527 Species: Mus musculus Consensus sequence (original motif): WDHSCCYSRGGSRAD Consensus sequence (reverse complement motif): DTMSCCKSMGGSHDW Alignment: WDHSCCYSRGGSRAD ---GCCBBVRGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00087 Tcfap2c_primary Original Motif Original Motif Backward 4 9 0.016909 Species: Mus musculus Consensus sequence (original motif): WHHSCCYSRGGSDAD Consensus sequence (reverse complement motif): DTHSCCKSMGGSHHW Alignment: WHHSCCYSRGGSDAD ---GCCBBVRGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00087 Tcfap2c_secondary Original Motif Original Motif Forward 3 9 0.0170259 Species: Mus musculus Consensus sequence (original motif): BHGCCCDAGGGCWD Consensus sequence (reverse complement motif): HWGCCCTDGGGCDB Alignment: BHGCCCDAGGGCWD --GCCBBVRGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00028 Tcfap2e_primary Original Motif Original Motif Backward 4 9 0.0198854 Species: Mus musculus Consensus sequence (original motif): HHHGCCTSAGGCDAD Consensus sequence (reverse complement motif): DTHGCCTSAGGCHHH Alignment: HHHGCCTSAGGCDAD ---GCCBBVRGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Reverse Complement Reverse Complement Backward 9 9 0.0203681 Species: Mus musculus Consensus sequence (original motif): DHHBCCCCGCCAHHBHB Consensus sequence (reverse complement motif): BHBHDTGGCGGGGBDHD Alignment: BHBHDTGGCGGGGBDHD SCMVBBGGC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_secondary Reverse Complement Reverse Complement Forward 1 9 0.0217064 Species: Mus musculus Consensus sequence (original motif): HBHWYGGCGCCAMDVBB Consensus sequence (reverse complement motif): BBBDYTGGCGCCKWDBD Alignment: BBBDYTGGCGCCKWDBD SCMVBBGGC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_secondary Original Motif Original Motif Forward 3 9 0.0234775 Species: Mus musculus Consensus sequence (original motif): HHRCCBBWGGDCDB Consensus sequence (reverse complement motif): BDGHCCWBVGGKDH Alignment: HHRCCBBWGGDCDB --GCCBBVRGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_secondary Original Motif Original Motif Backward 1 9 0.026642 Species: Mus musculus Consensus sequence (original motif): VVDBATACGCCCHAHHD Consensus sequence (reverse complement motif): DHDTHGGGCGTATBHBB Alignment: VVDBATACGCCCHAHHD --------GCCBBVRGS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 16 Motif name: SP1 Consensus sequence (original motif): CCCCKCCCCC Consensus sequence (reverse complement motif): GGGGGYGGGG ************************************************************************ Best Matches for Motif ID 16 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Original Motif Original Motif Backward 4 10 0.0231018 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: DBCCCCCCCCCCMYC --CCCCKCCCCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Original Motif Backward 3 10 0.0303207 Species: Mus musculus Consensus sequence (original motif): HBDRCCMCGCCCHHHD Consensus sequence (reverse complement motif): DHHDGGGCGRGGKHBH Alignment: HBDRCCMCGCCCHHHD ----CCCCKCCCCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondary Reverse Complement Reverse Complement Forward 5 10 0.0323007 Species: Mus musculus Consensus sequence (original motif): BHHBHCCGCCCCDHHHH Consensus sequence (reverse complement motif): HHHHDGGGGCGGDBHDV Alignment: HHHHDGGGGCGGDBHDV ----GGGGGYGGGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_secondary Reverse Complement Reverse Complement Forward 3 10 0.0340973 Species: Mus musculus Consensus sequence (original motif): BHVDCCCCDCCCBDBH Consensus sequence (reverse complement motif): HVDVGGGHGGGGDBHB Alignment: HVDVGGGHGGGGDBHB --GGGGGYGGGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_secondary Reverse Complement Reverse Complement Forward 5 10 0.0351051 Species: Mus musculus Consensus sequence (original motif): HBBBCCGCCCCWHHHV Consensus sequence (reverse complement motif): BHHHWGGGGCGGBBVH Alignment: BHHHWGGGGCGGBBVH ----GGGGGYGGGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryReverse Complement Reverse Complement Forward 7 10 0.0390437 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK ------GGGGGYGGGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryReverse Complement Reverse Complement Backward 7 10 0.0393358 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: HHBSHTCGTGRGTGGKGDBVWMV -------GGGGGYGGGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Original Motif Original Motif Backward 4 10 0.0413863 Species: Mus musculus Consensus sequence (original motif): DHHBCCCCGCCAHHBHB Consensus sequence (reverse complement motif): BHBHDTGGCGGGGBDHD Alignment: DHHBCCCCGCCAHHBHB ----CCCCKCCCCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Original Motif Original Motif Forward 4 10 0.0418947 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: HVBCCCCCCCCMHHHB ---CCCCKCCCCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Original Motif Original Motif Forward 3 10 0.0420708 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BDHHMCGCCCCCTHVBB --CCCCKCCCCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 17 Motif name: RXRAVDR Consensus sequence (original motif): GGGTCAWBGRGTTCA Consensus sequence (reverse complement motif): TGAACKCBWTGACCC ************************************************************************ Best Matches for Motif ID 17 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00037 Zfp105_secondary Original Motif Original Motif Backward 1 15 0.0631638 Species: Mus musculus Consensus sequence (original motif): DYGVKTCAATAABTYDD Consensus sequence (reverse complement motif): HDMAVTTATTGARVCMH Alignment: DYGVKTCAATAABTYDD --GGGTCAWBGRGTTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00044 Mafk_primary Reverse Complement Original Motif Backward 1 15 0.0639668 Species: Mus musculus Consensus sequence (original motif): DWAAAWTGCTGACTH Consensus sequence (reverse complement motif): HAGTCAGCAWTTTWD Alignment: DWAAAWTGCTGACTH TGAACKCBWTGACCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primaryOriginal Motif Original Motif Forward 9 15 0.0682816 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH --------GGGTCAWBGRGTTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primaryReverse Complement Original Motif Forward 2 15 0.06995 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: HTBVVVDGGACCACCCRGRDBG -TGAACKCBWTGACCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondaryReverse Complement Reverse Complement Backward 1 15 0.0711699 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: DVMHHDHKGACCCTCCTSVCBH -------TGAACKCBWTGACCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primaryOriginal Motif Reverse Complement Backward 2 15 0.072162 Species: Mus musculus Consensus sequence (original motif): HDGHHBHRGACCACCCGSVDVG Consensus sequence (reverse complement motif): CVHBSCGGGTGGTCMHVHHCDH Alignment: CVHBSCGGGTGGTCMHVHHCDH ------GGGTCAWBGRGTTCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00045 Mafb_primary Reverse Complement Original Motif Forward 2 14 0.562034 Species: Mus musculus Consensus sequence (original motif): HAAWDTGCTGACDWARH Consensus sequence (reverse complement motif): DMTWDGTCAGCADWTTH Alignment: DMTWDGTCAGCADWTTH- -TGAACKCBWTGACCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00012 Bbx_primary Original Motif Reverse Complement Forward 2 14 0.562788 Species: Mus musculus Consensus sequence (original motif): HADTTCAWTGAABWD Consensus sequence (reverse complement motif): HWBTTCAWTGAADTH Alignment: HWBTTCAWTGAADTH- -GGGTCAWBGRGTTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_secondary Original Motif Reverse Complement Forward 1 14 0.56549 Species: Mus musculus Consensus sequence (original motif): HHRCCBBWGGDCDB Consensus sequence (reverse complement motif): BDGHCCWBVGGKDH Alignment: HHRCCBBWGGDCDB- GGGTCAWBGRGTTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Original Motif Reverse Complement Forward 4 14 0.565777 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD- ---GGGTCAWBGRGTTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 18 Motif name: RREB1 Consensus sequence (original motif): CCCCMAAMCAMCCMCMMMCV Consensus sequence (reverse complement motif): BGRRRGRGGRTGRTTYGGGG ************************************************************************ Best Matches for Motif ID 18 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primaryReverse Complement Reverse Complement Backward 4 20 0.0443369 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: YBVDMGTGGGTGGTCKVVBVBBT BGRRRGRGGRTGRTTYGGGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondaryOriginal Motif Original Motif Backward 2 20 0.0490569 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH --CCCCMAAMCAMCCMCMMMCV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primaryReverse Complement Reverse Complement Forward 2 20 0.0546172 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BTBVTCVTGGGTGGTCMVVDVBB -BGRRRGRGGRTGRTTYGGGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryOriginal Motif Original Motif Backward 3 20 0.055783 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH -CCCCMAAMCAMCCMCMMMCV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryReverse Complement Original Motif Forward 3 20 0.057969 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB --BGRRRGRGGRTGRTTYGGGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_primaryOriginal Motif Original Motif Backward 2 20 0.0595101 Species: Mus musculus Consensus sequence (original motif): DTVBDDRGACCACCCAGDWDGBH Consensus sequence (reverse complement motif): DBCDWHCTGGGTGGTCMDHBBAH Alignment: DTVBDDRGACCACCCAGDWDGBH --CCCCMAAMCAMCCMCMMMCV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primaryReverse Complement Original Motif Forward 2 20 0.0622003 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH -BGRRRGRGGRTGRTTYGGGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Original Motif Forward 2 20 0.0626951 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH -CCCCMAAMCAMCCMCMMMCV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondaryOriginal Motif Reverse Complement Backward 3 20 0.0631901 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: DVMHHDHKGACCCTCCTSVCBH CCCCMAAMCAMCCMCMMMCV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Reverse Complement Reverse Complement Backward 1 20 0.0673848 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: DCATDBTGHGCATKMTTBRSWR --BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 19 Motif name: REST Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA ************************************************************************ Best Matches for Motif ID 19 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primaryOriginal Motif Original Motif Forward 3 21 0.0699178 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BBBDVVRGACCACCCAVGABBAB --TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondaryReverse Complement Reverse Complement Forward 1 21 0.0734685 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: VMYDHDGMCCHCCKBGVVAAVH GGYGCTGTCCATGGTGCTGAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryOriginal Motif Original Motif Forward 2 21 0.0740652 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH -TTCAGCACCATGGACAGCKCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondaryOriginal Motif Original Motif Backward 1 21 0.0750152 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH --TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primaryReverse Complement Original Motif Backward 3 21 0.0751449 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH GGYGCTGTCCATGGTGCTGAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Reverse Complement Backward 2 21 0.075832 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH -TTCAGCACCATGGACAGCKCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_primaryOriginal Motif Original Motif Backward 1 21 0.0773446 Species: Mus musculus Consensus sequence (original motif): DTVBDDRGACCACCCAGDWDGBH Consensus sequence (reverse complement motif): DBCDWHCTGGGTGGTCMDHBBAH Alignment: DTVBDDRGACCACCCAGDWDGBH --TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Original Motif Original Motif Forward 3 21 0.0775367 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: YDYBDHTMCACGTGGADDBMDGT --TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Reverse Complement Reverse Complement Backward 1 21 0.077977 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: DCATDBTGHGCATKMTTBRSWR -GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Original Motif Backward 1 21 0.0785969 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: BADHBDHCGCCCMCGCAHHDBBV --GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 20 Motif name: PPARGRXRA Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB ************************************************************************ Best Matches for Motif ID 20 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Original Motif Reverse Complement Backward 2 15 0.0304954 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD -BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00058 Tcf3_primary Original Motif Original Motif Forward 2 15 0.0319475 Species: Mus musculus Consensus sequence (original motif): HHHASATCAAAGVRHHH Consensus sequence (reverse complement motif): HHHKVCTTTGATSTHHH Alignment: HHHASATCAAAGVRHHH -BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00054 Tcf7_primary Original Motif Original Motif Backward 2 15 0.032779 Species: Mus musculus Consensus sequence (original motif): BHHASATCAAAGGAHHH Consensus sequence (reverse complement motif): HHHTCCTTTGATSTHHV Alignment: BHHASATCAAAGGAHHH -BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00082 Zfp187_secondary Original Motif Reverse Complement Backward 2 15 0.0334185 Species: Mus musculus Consensus sequence (original motif): DDGMCCTBGTCCHYHV Consensus sequence (reverse complement motif): VHMDGGACVAGGRCDH Alignment: VHMDGGACVAGGRCDH BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Original Motif Original Motif Backward 2 15 0.0352539 Species: Mus musculus Consensus sequence (original motif): HBDDDAACAAAGRVBHH Consensus sequence (reverse complement motif): HHBBMCTTTGTTHDDBH Alignment: HBDDDAACAAAGRVBHH -BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Original Motif Original Motif Backward 2 15 0.0358782 Species: Mus musculus Consensus sequence (original motif): HBDDRAACAAAGRABHH Consensus sequence (reverse complement motif): HHBTMCTTTGTTMDDVH Alignment: HBDDRAACAAAGRABHH -BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00101 Sox12_secondary Reverse Complement Reverse Complement Backward 2 15 0.0374729 Species: Mus musculus Consensus sequence (original motif): VVDBASACAAAGRADH Consensus sequence (reverse complement motif): HDTMCTTTGTSTVDBB Alignment: HDTMCTTTGTSTVDBB TGRCCTKTGHCCKAB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00083 Tcf7l2_primary Original Motif Reverse Complement Forward 2 15 0.0379757 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATSTDDV Consensus sequence (reverse complement motif): BDDASATCAAAGGMDDD Alignment: BDDASATCAAAGGMDDD -BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Reverse Complement Backward 2 15 0.0382733 Species: Mus musculus Consensus sequence (original motif): HBDRCCMCGCCCHHHD Consensus sequence (reverse complement motif): DHHDGGGCGRGGKHBH Alignment: DHHDGGGCGRGGKHBH BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00055 Hbp1_secondary Original Motif Reverse Complement Forward 1 15 0.0397168 Species: Mus musculus Consensus sequence (original motif): DDDYCCCATTGTVHABH Consensus sequence (reverse complement motif): HBTHVACAATGGGMDHD Alignment: DDDYCCCATTGTVHABH BTRGGDCARAGGKCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 21 Motif name: PLAG1 Consensus sequence (original motif): GGGGCCCAAGGGGG Consensus sequence (reverse complement motif): CCCCCTTGGGCCCC ************************************************************************ Best Matches for Motif ID 21 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00102 Zic1_primary Reverse Complement Reverse Complement Forward 1 14 0.0499525 Species: Mus musculus Consensus sequence (original motif): BHCCCCCGGGGGGG Consensus sequence (reverse complement motif): CCCCCCCGGGGGHB Alignment: CCCCCCCGGGGGHB CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primaryReverse Complement Original Motif Backward 1 14 0.0540613 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BTBVTCVTGGGTGGTCMVVDVBB ---------CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_primary Reverse Complement Original Motif Backward 1 14 0.0548411 Species: Mus musculus Consensus sequence (original motif): BMCCCCCGGGGGGGB Consensus sequence (reverse complement motif): VCCCCCCCGGGGGRB Alignment: VCCCCCCCGGGGGRB -CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_secondary Original Motif Reverse Complement Backward 1 14 0.0556785 Species: Mus musculus Consensus sequence (original motif): HHRCCBBWGGDCDB Consensus sequence (reverse complement motif): BDGHCCWBVGGKDH Alignment: HHRCCBBWGGDCDB GGGGCCCAAGGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00006 Zic3_primary Reverse Complement Original Motif Forward 2 14 0.056976 Species: Mus musculus Consensus sequence (original motif): BMCCCCCGGGGGGGB Consensus sequence (reverse complement motif): VCCCCCCCGGGGGRB Alignment: BMCCCCCGGGGGGGB -CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primaryReverse Complement Original Motif Backward 9 14 0.0573495 Species: Mus musculus Consensus sequence (original motif): HDGHHBHRGACCACCCGSVDVG Consensus sequence (reverse complement motif): CVHBSCGGGTGGTCMHVHHCDH Alignment: HDGHHBHRGACCACCCGSVDVG CCCCCTTGGGCCCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondaryReverse Complement Reverse Complement Forward 9 14 0.0579022 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: VMYDHDGMCCHCCKBGVVAAVH --------CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondaryReverse Complement Reverse Complement Backward 9 14 0.0580662 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: DVMHHDHKGACCCTCCTSVCBH CCCCCTTGGGCCCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primaryReverse Complement Reverse Complement Backward 1 14 0.0597453 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB ---------CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Reverse Complement Original Motif Backward 1 14 0.0598088 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: DBCCCCCCCCCCMYC -CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 22 Motif name: NR2F1 Consensus sequence (original motif): TGAMCTTTGMMCYT Consensus sequence (reverse complement motif): AKGYYCAAAGRTCA ************************************************************************ Best Matches for Motif ID 22 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00083 Tcf7l2_primary Original Motif Original Motif Backward 3 14 0.0452364 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATSTDDV Consensus sequence (reverse complement motif): BDDASATCAAAGGMDDD Alignment: DDDYCCTTTGATSTDDV -TGAMCTTTGMMCYT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Reverse Complement Reverse Complement Backward 2 14 0.0453449 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD --AKGYYCAAAGRTCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondaryOriginal Motif Reverse Complement Forward 8 14 0.0461358 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: DVMHHDHKGACCCTCCTSVCBH -------TGAMCTTTGMMCYT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00054 Tcf7_primary Reverse Complement Original Motif Backward 2 14 0.0461768 Species: Mus musculus Consensus sequence (original motif): BHHASATCAAAGGAHHH Consensus sequence (reverse complement motif): HHHTCCTTTGATSTHHV Alignment: BHHASATCAAAGGAHHH --AKGYYCAAAGRTCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00058 Tcf3_primary Reverse Complement Original Motif Backward 2 14 0.0473628 Species: Mus musculus Consensus sequence (original motif): HHHASATCAAAGVRHHH Consensus sequence (reverse complement motif): HHHKVCTTTGATSTHHH Alignment: HHHASATCAAAGVRHHH --AKGYYCAAAGRTCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00082 Zfp187_secondary Original Motif Original Motif Forward 1 14 0.0480188 Species: Mus musculus Consensus sequence (original motif): DDGMCCTBGTCCHYHV Consensus sequence (reverse complement motif): VHMDGGACVAGGRCDH Alignment: DDGMCCTBGTCCHYHV TGAMCTTTGMMCYT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Original Motif Reverse Complement Forward 2 14 0.0495447 Species: Mus musculus Consensus sequence (original motif): HBDDDAACAAAGRVBHH Consensus sequence (reverse complement motif): HHBBMCTTTGTTHDDBH Alignment: HHBBMCTTTGTTHDDBH -TGAMCTTTGMMCYT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Original Motif Reverse Complement Backward 3 14 0.0499033 Species: Mus musculus Consensus sequence (original motif): HBDDRAACAAAGRABHH Consensus sequence (reverse complement motif): HHBTMCTTTGTTMDDVH Alignment: HHBTMCTTTGTTMDDVH -TGAMCTTTGMMCYT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00023 Sox30_primary Original Motif Original Motif Forward 3 14 0.0511534 Species: Mus musculus Consensus sequence (original motif): DHDBAACAATDRHHHH Consensus sequence (reverse complement motif): HHHHMHATTGTTBDHD Alignment: DHDBAACAATDRHHHH --TGAMCTTTGMMCYT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_secondary Reverse Complement Reverse Complement Backward 1 14 0.0516973 Species: Mus musculus Consensus sequence (original motif): HHRCCBBWGGDCDB Consensus sequence (reverse complement motif): BDGHCCWBVGGKDH Alignment: BDGHCCWBVGGKDH AKGYYCAAAGRTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 23 Motif name: MZF1_1-4 Consensus sequence (original motif): BGGGGA Consensus sequence (reverse complement motif): TCCCCV ************************************************************************ Best Matches for Motif ID 23 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00176 Crx Reverse Complement Reverse Complement Backward 4 6 0 Species: Mus musculus Consensus sequence (original motif): YBWDGGGGATTARCCD Consensus sequence (reverse complement motif): DGGMTAATCCCCDWBK Alignment: DGGMTAATCCCCDWBK -------TCCCCV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00265 Pitx3 Reverse Complement Reverse Complement Backward 2 6 0.00193291 Species: Mus musculus Consensus sequence (original motif): VGGGGGATTAGCDDBC Consensus sequence (reverse complement motif): GBHDGCTAATCCCCCB Alignment: GBHDGCTAATCCCCCB ---------TCCCCV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00239 Obox2 Reverse Complement Reverse Complement Forward 9 6 0.00284735 Species: Mus musculus Consensus sequence (original motif): DBRGGGGGATTAAMTAH Consensus sequence (reverse complement motif): HTARTTAATCCCCCKBD Alignment: HTARTTAATCCCCCKBD --------TCCCCV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00216 Obox1 Original Motif Original Motif Backward 9 6 0.00461976 Species: Mus musculus Consensus sequence (original motif): DDARGGGGATTAACDHH Consensus sequence (reverse complement motif): DHDGTTAATCCCCKTDD Alignment: DDARGGGGATTAACDHH ---BGGGGA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00160 Obox3 Reverse Complement Reverse Complement Forward 9 6 0.00641818 Species: Mus musculus Consensus sequence (original motif): HBVGGGGGATTAACWHH Consensus sequence (reverse complement motif): HHWGTTAATCCCCCBBH Alignment: HHWGTTAATCCCCCBBH --------TCCCCV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00208 Obox5_2284.1 Original Motif Original Motif Backward 10 6 0.0110256 Species: Mus musculus Consensus sequence (original motif): HDVRGGGATTAAHTHHH Consensus sequence (reverse complement motif): DHHAHTTAATCCCKVDH Alignment: HDVRGGGATTAAHTHHH --BGGGGA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00143 Dobox5 Original Motif Original Motif Forward 3 6 0.0136568 Species: Mus musculus Consensus sequence (original motif): DDHVGGGATTAATHDTH Consensus sequence (reverse complement motif): DADHATTAATCCCBHHH Alignment: DDHVGGGATTAATHDTH --BGGGGA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00229 Otx1 Original Motif Original Motif Backward 10 6 0.0138939 Species: Mus musculus Consensus sequence (original motif): DDDRGGGATTAATWHHB Consensus sequence (reverse complement motif): VHHWATTAATCCCMDHH Alignment: DDDRGGGATTAATWHHB --BGGGGA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00267 Otx2 Original Motif Original Motif Backward 10 6 0.016387 Species: Mus musculus Consensus sequence (original motif): DDDRGGGATTAATHDDH Consensus sequence (reverse complement motif): DDHHATTAATCCCKDHD Alignment: DDDRGGGATTAATHDDH --BGGGGA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00153 Pitx1 Original Motif Original Motif Backward 9 6 0.0164951 Species: Mus musculus Consensus sequence (original motif): HBVDRGGGATTAAMDHH Consensus sequence (reverse complement motif): HHDRTTAATCCCKHBVH Alignment: HBVDRGGGATTAAMDHH ---BGGGGA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 24 Motif name: Ar Consensus sequence (original motif): HWDAGHACRHHVTGTHCCHVMV Consensus sequence (reverse complement motif): VRVDGGHACAVDDKGTHCTDWH ************************************************************************ Best Matches for Motif ID 24 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondary Original Motif Original Motif Backward 1 22 0.0676991 Species: Mus musculus Consensus sequence (original motif): HBHDVBWGATHBTATCRVBHHH Consensus sequence (reverse complement motif): HHHBBMGATAVHATCWVVDHVH Alignment: HBHDVBWGATHBTATCRVBHHH HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Reverse Complement Reverse Complement Backward 1 22 0.0692146 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Reverse Complement Reverse Complement Forward 1 22 0.0695612 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Original Motif Reverse Complement Backward 1 22 0.0771346 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: YDYBDHTMCACGTGGADDBMDGT -HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Reverse Complement Original Motif Forward 1 22 0.0772045 Species: Mus musculus Consensus sequence (original motif): WHVBVVMACGCGCGTCDYHWDH Consensus sequence (reverse complement motif): HDWHMHGACGCGCGTRBVVBHW Alignment: WHVBVVMACGCGCGTCDYHWDH VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondary Reverse Complement Original Motif Forward 1 22 0.077433 Species: Mus musculus Consensus sequence (original motif): DDRMHBACGCGYGCGTDGBBDB Consensus sequence (reverse complement motif): BDVBCDACGCKCGCGTBHRKHD Alignment: BDVBCDACGCKCGCGTBHRKHD VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryOriginal Motif Original Motif Backward 1 22 0.0776897 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH -HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Original Motif Original Motif Forward 1 22 0.0787977 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: MWSMBAARRATGCDCABHATGD HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Original Motif Original Motif Forward 1 22 0.0792723 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: HHBDHDDAACAATDRHHHHHBW HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondaryOriginal Motif Original Motif Backward 1 22 0.0799314 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: HVGVSAGGAGGGTCYHHHHYVH HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 25 Motif name: Arnt Consensus sequence (original motif): CACGTG Consensus sequence (reverse complement motif): CACGTG ************************************************************************ Best Matches for Motif ID 25 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Original Motif Original Motif Forward 9 6 0 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: RDHDBVDTCACGTGASBHVHDH --------CACGTG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Reverse Complement Reverse Complement Backward 9 6 0.0026425 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM ---------CACGTG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_primary Original Motif Original Motif Forward 5 6 0.0044422 Species: Mus musculus Consensus sequence (original motif): DDASCACGTGBTBVDD Consensus sequence (reverse complement motif): HHVBABCACGTGSTHD Alignment: DDASCACGTGBTBVDD ----CACGTG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Reverse Complement Reverse Complement Forward 7 6 0.0342153 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: DHDBHGCACCTGBDDVB ------CACGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00097 Mtf1_primary Reverse Complement Reverse Complement Forward 9 6 0.0471928 Species: Mus musculus Consensus sequence (original motif): DBDHCGTGTGCAAMDH Consensus sequence (reverse complement motif): HDYTTGCACACGDHBH Alignment: HDYTTGCACACGDHBH --------CACGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00249 Nkx2-5 Reverse Complement Original Motif Backward 6 6 0.0482749 Species: Mus musculus Consensus sequence (original motif): HDADCCACTTRAAWTT Consensus sequence (reverse complement motif): AAWTTMAAGTGGHTDH Alignment: HDADCCACTTRAAWTT -----CACGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Reverse Complement Original Motif Backward 5 6 0.0485437 Species: Mus musculus Consensus sequence (original motif): BBGHCACGCGACDD Consensus sequence (reverse complement motif): HDGTCGCGTGDCVB Alignment: BBGHCACGCGACDD ----CACGTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00231 Nkx2-2 Original Motif Reverse Complement Forward 7 6 0.0497234 Species: Mus musculus Consensus sequence (original motif): HDVRCCACTTGARADBD Consensus sequence (reverse complement motif): DVDTKTCAAGTGGKBDH Alignment: DVDTKTCAAGTGGKBDH ------CACGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00165 Titf1 Original Motif Reverse Complement Backward 6 6 0.0498919 Species: Mus musculus Consensus sequence (original motif): BVABCCACTTGAMHTT Consensus sequence (reverse complement motif): AAHYTCAAGTGGBTBV Alignment: AAHYTCAAGTGGBTBV -----CACGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00147 Nkx2-6 Reverse Complement Original Motif Forward 6 6 0.0544601 Species: Mus musculus Consensus sequence (original motif): DDADCCACTTAAVHTT Consensus sequence (reverse complement motif): AAHVTTAAGTGGHTDD Alignment: DDADCCACTTAAVHTT -----CACGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 26 Motif name: ArntAhr Consensus sequence (original motif): YGCGTG Consensus sequence (reverse complement motif): CACGCM ************************************************************************ Best Matches for Motif ID 26 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Reverse Complement Forward 7 6 0 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB ------YGCGTG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_secondary Reverse Complement Reverse Complement Forward 6 6 0.00183587 Species: Mus musculus Consensus sequence (original motif): BDWAGGCGTGBCHHD Consensus sequence (reverse complement motif): HHDGBCACGCCTWDB Alignment: HHDGBCACGCCTWDB -----CACGCM---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Original Motif Reverse Complement Backward 5 6 0.00348048 Species: Mus musculus Consensus sequence (original motif): BBGHCACGCGACDD Consensus sequence (reverse complement motif): HDGTCGCGTGDCVB Alignment: HDGTCGCGTGDCVB ----YGCGTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_primary Reverse Complement Reverse Complement Forward 8 6 0.00526158 Species: Mus musculus Consensus sequence (original motif): DBBVDDDRTRGCGTCBBYTHGA Consensus sequence (reverse complement motif): TCDAMVBGACGCMAKDDDVBBD Alignment: TCDAMVBGACGCMAKDDDVBBD -------CACGCM--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_second Original Motif Reverse Complement Backward 8 6 0.00558171 Species: Mus musculus Consensus sequence (original motif): DVMVGCACACACKCVH Consensus sequence (reverse complement motif): HBGYGTGTGTGCVRVD Alignment: HBGYGTGTGTGCVRVD ---YGCGTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00097 Mtf1_primary Reverse Complement Reverse Complement Forward 9 6 0.00702416 Species: Mus musculus Consensus sequence (original motif): DBDHCGTGTGCAAMDH Consensus sequence (reverse complement motif): HDYTTGCACACGDHBH Alignment: HDYTTGCACACGDHBH --------CACGCM-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondary Original Motif Original Motif Forward 8 6 0.0123233 Species: Mus musculus Consensus sequence (original motif): DDRMHBACGCGYGCGTDGBBDB Consensus sequence (reverse complement motif): BDVBCDACGCKCGCGTBHRKHD Alignment: DDRMHBACGCGYGCGTDGBBDB -------YGCGTG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Reverse Complement Original Motif Backward 3 6 0.0141579 Species: Mus musculus Consensus sequence (original motif): HCCGCCCCCGCAHB Consensus sequence (reverse complement motif): VHTGCGGGGGCGGH Alignment: HCCGCCCCCGCAHB ------CACGCM-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primaryOriginal Motif Original Motif Backward 11 6 0.0144485 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH -------YGCGTG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Original Motif Reverse Complement Backward 8 6 0.0172109 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VHYTCCDWCCGCGTCMMTHWHV ---------YGCGTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 27 Motif name: E2F1 Consensus sequence (original motif): TTTSGCGC Consensus sequence (reverse complement motif): GCGCSAAA ************************************************************************ Best Matches for Motif ID 27 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00001 E2F2_secondary Original Motif Reverse Complement Backward 7 8 0 Species: Mus musculus Consensus sequence (original motif): HVBWYGGCGCCAADVBB Consensus sequence (reverse complement motif): BBBDTTGGCGCCKWVVD Alignment: BBBDTTGGCGCCKWVVD ---TTTSGCGC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_secondary Reverse Complement Original Motif Backward 4 8 0.00182028 Species: Mus musculus Consensus sequence (original motif): HBHWYGGCGCCAMDVBB Consensus sequence (reverse complement motif): BBBDYTGGCGCCKWDBD Alignment: HBHWYGGCGCCAMDVBB ------GCGCSAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00072 IRC900814_primary Reverse Complement Original Motif Forward 5 8 0.0237639 Species: Mus musculus Consensus sequence (original motif): DDHTACGACAAAWDDB Consensus sequence (reverse complement motif): BHDWTTTGTCGTAHDD Alignment: DDHTACGACAAAWDDB ----GCGCSAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_primary Reverse Complement Reverse Complement Backward 3 8 0.0275636 Species: Mus musculus Consensus sequence (original motif): VHDADGGCGCGCSHW Consensus sequence (reverse complement motif): WHSGCGCGCCHTDHB Alignment: WHSGCGCGCCHTDHB -----GCGCSAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_primary Reverse Complement Reverse Complement Forward 9 8 0.028109 Species: Mus musculus Consensus sequence (original motif): DDGCGCGCGCRCHYRD Consensus sequence (reverse complement motif): DMMDGMGCGCGCGCHD Alignment: DMMDGMGCGCGCGCHD --------GCGCSAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00001 E2F2_primary Original Motif Original Motif Backward 6 8 0.0296302 Species: Mus musculus Consensus sequence (original motif): VHDARGGCGCGCVHH Consensus sequence (reverse complement motif): HHVGCGCGCCKTDHB Alignment: VHDARGGCGCGCVHH --TTTSGCGC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00068 Eomes_primary Reverse Complement Original Motif Forward 7 8 0.0348969 Species: Mus musculus Consensus sequence (original motif): BVHDAGGTGTGAAAHHH Consensus sequence (reverse complement motif): HHHTTTCACACCTDHBV Alignment: BVHDAGGTGTGAAAHHH ------GCGCSAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00011 Irf6_primary Original Motif Reverse Complement Forward 8 8 0.0368278 Species: Mus musculus Consensus sequence (original motif): HDDAHCGAAACYAVDDD Consensus sequence (reverse complement motif): DHDBTKGTTTCGHTHDD Alignment: DHDBTKGTTTCGHTHDD -------TTTSGCGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00049 Sp100_primary Reverse Complement Reverse Complement Forward 6 8 0.0383813 Species: Mus musculus Consensus sequence (original motif): DWTWHHCGGAAAWD Consensus sequence (reverse complement motif): DWTTTCCGHHWAWD Alignment: DWTTTCCGHHWAWD -----GCGCSAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_primary Reverse Complement Reverse Complement Forward 9 8 0.0406002 Species: Mus musculus Consensus sequence (original motif): DBBVDDDRTRGCGTCBBYTHGA Consensus sequence (reverse complement motif): TCDAMVBGACGCMAKDDDVBBD Alignment: TCDAMVBGACGCMAKDDDVBBD --------GCGCSAAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 28 Motif name: Egr1 Consensus sequence (original motif): HGCGTGGGCGK Consensus sequence (reverse complement motif): YCGCCCACGCH ************************************************************************ Best Matches for Motif ID 28 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Reverse Complement Backward 7 11 0 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB ------HGCGTGGGCGK------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Reverse Complement Original Motif Forward 2 11 0.00727533 Species: Mus musculus Consensus sequence (original motif): HCCGCCCCCGCAHB Consensus sequence (reverse complement motif): VHTGCGGGGGCGGH Alignment: HCCGCCCCCGCAHB -YCGCCCACGCH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondaryReverse Complement Original Motif Backward 4 11 0.0262579 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH ---------YCGCCCACGCH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primaryOriginal Motif Reverse Complement Forward 3 11 0.0297053 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: YBVDMGTGGGTGGTCKVVBVBBT --HGCGTGGGCGK---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Original Motif Forward 5 11 0.0318144 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB ----HGCGTGGGCGK-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Original Motif Reverse Complement Forward 3 11 0.0345009 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BVVHAGGGGGCGRDHHB --HGCGTGGGCGK---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primaryOriginal Motif Reverse Complement Forward 4 11 0.0353502 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BTBVTCVTGGGTGGTCMVVDVBB ---HGCGTGGGCGK--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_secondary Reverse Complement Reverse Complement Forward 3 11 0.0360229 Species: Mus musculus Consensus sequence (original motif): BBHBGAGTGGGAHHDB Consensus sequence (reverse complement motif): BHHDTCCCACTCBDBV Alignment: BHHDTCCCACTCBDBV --YCGCCCACGCH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryReverse Complement Original Motif Backward 5 11 0.0362743 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH --------YCGCCCACGCH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00097 Mtf1_primary Reverse Complement Reverse Complement Backward 3 11 0.0386944 Species: Mus musculus Consensus sequence (original motif): DBDHCGTGTGCAAMDH Consensus sequence (reverse complement motif): HDYTTGCACACGDHBH Alignment: HDYTTGCACACGDHBH ---YCGCCCACGCH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 29 Motif name: ESR1 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV ************************************************************************ Best Matches for Motif ID 29 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Reverse Complement Backward 4 20 0.0658405 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH VDBHMAGGTCACCCTGACCY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondary Original Motif Reverse Complement Forward 1 20 0.0689748 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: BDBBVBVGTAWCCAAGVBHBAGB VDBHMAGGTCACCCTGACCY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primaryReverse Complement Reverse Complement Backward 3 20 0.0701247 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: CBDMCMGGGTGGTCCHVBVBAH MGGTCAGGGTGACCTRDBHV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondaryReverse Complement Original Motif Backward 3 20 0.0711267 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: HVGVSAGGAGGGTCYHHHHYVH MGGTCAGGGTGACCTRDBHV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primaryOriginal Motif Reverse Complement Forward 2 20 0.0742427 Species: Mus musculus Consensus sequence (original motif): HDGHHBHRGACCACCCGSVDVG Consensus sequence (reverse complement motif): CVHBSCGGGTGGTCMHVHHCDH Alignment: CVHBSCGGGTGGTCMHVHHCDH -VDBHMAGGTCACCCTGACCY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primaryOriginal Motif Original Motif Backward 2 20 0.0747053 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: ABBBBVVRGACCACCCACRDBBM --VDBHMAGGTCACCCTGACCY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primaryOriginal Motif Original Motif Forward 4 20 0.0749165 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH ---VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primaryOriginal Motif Original Motif Forward 2 20 0.0759307 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BBBDVVRGACCACCCAVGABBAB -VDBHMAGGTCACCCTGACCY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Reverse Complement Backward 3 20 0.0762689 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB -MGGTCAGGGTGACCTRDBHV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Original Motif Original Motif Forward 1 20 0.0780113 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: GTVBDAATTGTVTGHGDDHKVB VDBHMAGGTCACCCTGACCY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 30 Motif name: ESR2 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV ************************************************************************ Best Matches for Motif ID 30 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Original Motif Original Motif Forward 4 18 0.0443894 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: GTVBDAATTGTVTGHGDDHKVB ---VHRGGTCABDBTGMCCTB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Reverse Complement Forward 4 18 0.049219 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH ---VHRGGTCABDBTGMCCTB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Original Motif Reverse Complement Backward 3 18 0.0509182 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM --VHRGGTCABDBTGMCCTB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondaryReverse Complement Original Motif Forward 2 18 0.0527075 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: DVTTVVCVYGGHGGYCHHDMYB -BAGGYCABHBTGACCKHV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Reverse Complement Reverse Complement Forward 2 18 0.0541044 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: WBHHHHHMDATTGTTHDHDVHH -BAGGYCABHBTGACCKHV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondary Reverse Complement Original Motif Forward 3 18 0.0541108 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: VCTBHBVCTTGGWTACVVVVVDB --BAGGYCABHBTGACCKHV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Original Motif Original Motif Backward 2 18 0.0543733 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VDWDARRGACGCGGWHGGAKHV ---VHRGGTCABDBTGMCCTB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primaryReverse Complement Original Motif Backward 5 18 0.0548087 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH -BAGGYCABHBTGACCKHV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Original Motif Reverse Complement Forward 5 18 0.055453 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: DCATDBTGHGCATKMTTBRSWR ----VHRGGTCABDBTGMCCTB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondary Original Motif Original Motif Backward 4 18 0.0566426 Species: Mus musculus Consensus sequence (original motif): HBHDVBWGATHBTATCRVBHHH Consensus sequence (reverse complement motif): HHHBBMGATAVHATCWVVDHVH Alignment: HBHDVBWGATHBTATCRVBHHH -VHRGGTCABDBTGMCCTB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 31 Motif name: Esrrb Consensus sequence (original motif): CACGTG Consensus sequence (reverse complement motif): CACGTG ************************************************************************ Best Matches for Motif ID 31 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Original Motif Original Motif Forward 9 6 0 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: RDHDBVDTCACGTGASBHVHDH --------CACGTG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Reverse Complement Reverse Complement Backward 9 6 0.0026425 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM ---------CACGTG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_primary Original Motif Original Motif Forward 5 6 0.0044422 Species: Mus musculus Consensus sequence (original motif): DDASCACGTGBTBVDD Consensus sequence (reverse complement motif): HHVBABCACGTGSTHD Alignment: DDASCACGTGBTBVDD ----CACGTG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Reverse Complement Reverse Complement Forward 7 6 0.0342153 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: DHDBHGCACCTGBDDVB ------CACGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00097 Mtf1_primary Reverse Complement Reverse Complement Forward 9 6 0.0471928 Species: Mus musculus Consensus sequence (original motif): DBDHCGTGTGCAAMDH Consensus sequence (reverse complement motif): HDYTTGCACACGDHBH Alignment: HDYTTGCACACGDHBH --------CACGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00249 Nkx2-5 Reverse Complement Original Motif Backward 6 6 0.0482749 Species: Mus musculus Consensus sequence (original motif): HDADCCACTTRAAWTT Consensus sequence (reverse complement motif): AAWTTMAAGTGGHTDH Alignment: HDADCCACTTRAAWTT -----CACGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Reverse Complement Original Motif Backward 5 6 0.0485437 Species: Mus musculus Consensus sequence (original motif): BBGHCACGCGACDD Consensus sequence (reverse complement motif): HDGTCGCGTGDCVB Alignment: BBGHCACGCGACDD ----CACGTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00231 Nkx2-2 Original Motif Reverse Complement Forward 7 6 0.0497234 Species: Mus musculus Consensus sequence (original motif): HDVRCCACTTGARADBD Consensus sequence (reverse complement motif): DVDTKTCAAGTGGKBDH Alignment: DVDTKTCAAGTGGKBDH ------CACGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00165 Titf1 Original Motif Reverse Complement Backward 6 6 0.0498919 Species: Mus musculus Consensus sequence (original motif): BVABCCACTTGAMHTT Consensus sequence (reverse complement motif): AAHYTCAAGTGGBTBV Alignment: AAHYTCAAGTGGBTBV -----CACGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00147 Nkx2-6 Reverse Complement Original Motif Forward 6 6 0.0544601 Species: Mus musculus Consensus sequence (original motif): DDADCCACTTAAVHTT Consensus sequence (reverse complement motif): AAHVTTAAGTGGHTDD Alignment: DDADCCACTTAAVHTT -----CACGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 32 Motif name: EWSR1-FLI1 Consensus sequence (original motif): GGAAGGAAGGAAGGAAGG Consensus sequence (reverse complement motif): CCTTCCTTCCTTCCTTCC ************************************************************************ Best Matches for Motif ID 32 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00419 Spic Original Motif Original Motif Backward 3 14 0.0442834 Species: Mus musculus Consensus sequence (original motif): VAAAGMGGAAGTWD Consensus sequence (reverse complement motif): DWACTTCCRCTTTB Alignment: ----VAAAGMGGAAGTWD GGAAGGAAGGAAGGAAGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00055 Hbp1_primary Reverse Complement Reverse Complement Backward 5 14 0.0466226 Species: Mus musculus Consensus sequence (original motif): HHDWTSAATGAATDDB Consensus sequence (reverse complement motif): VDHATTCATTSAWDDH Alignment: ----VDHATTCATTSAWDDH CCTTCCTTCCTTCCTTCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00035 Hic1_primary Original Motif Reverse Complement Forward 5 14 0.047846 Species: Mus musculus Consensus sequence (original motif): DBBATGCCAACCHVHH Consensus sequence (reverse complement motif): DDBHGGTTGGCATVBD Alignment: DBBATGCCAACCHVHH---- ----GGAAGGAAGGAAGGAAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00090 Elf3_primary Reverse Complement Reverse Complement Backward 4 13 0.539121 Species: Mus musculus Consensus sequence (original motif): DAHMMGGAARTDA Consensus sequence (reverse complement motif): TDAMTTCCYYDTD Alignment: -----TDAMTTCCYYDTD CCTTCCTTCCTTCCTTCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Reverse Complement Reverse Complement Forward 5 13 0.547912 Species: Mus musculus Consensus sequence (original motif): HBDDDAACAAAGRVBHH Consensus sequence (reverse complement motif): HHBBMCTTTGTTHDDBH Alignment: HHBBMCTTTGTTHDDBH----- ----CCTTCCTTCCTTCCTTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Original Motif Reverse Complement Forward 6 13 0.548284 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: DBCCCCCCCCCCMYC----- -----GGAAGGAAGGAAGGAAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Reverse Complement Reverse Complement Forward 5 13 0.54837 Species: Mus musculus Consensus sequence (original motif): HBDDRAACAAAGRABHH Consensus sequence (reverse complement motif): HHBTMCTTTGTTMDDVH Alignment: HHBTMCTTTGTTMDDVH----- ----CCTTCCTTCCTTCCTTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondaryOriginal Motif Original Motif Forward 7 12 1.04069 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: HVGVSAGGAGGGTCYHHHHYVH------ ------GGAAGGAAGGAAGGAAGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00409 Elf5 Original Motif Original Motif Backward 3 12 1.04159 Species: Mus musculus Consensus sequence (original motif): BWAHSMGGAAGTWD Consensus sequence (reverse complement motif): DWACTTCCRSDTWV Alignment: ------BWAHSMGGAAGTWD GGAAGGAAGGAAGGAAGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00056 Rfx4_secondary Original Motif Reverse Complement Backward 7 12 1.04349 Species: Mus musculus Consensus sequence (original motif): HHBCHTRGWTACVVH Consensus sequence (reverse complement motif): HVVGTAWCKADGBHH Alignment: ------HHBCHTRGWTACVVH GGAAGGAAGGAAGGAAGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 33 Motif name: HIF1AARNT Consensus sequence (original motif): VBACGTGV Consensus sequence (reverse complement motif): VCACGTBV ************************************************************************ Best Matches for Motif ID 33 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00097 Mtf1_primary Reverse Complement Reverse Complement Backward 2 8 0 Species: Mus musculus Consensus sequence (original motif): DBDHCGTGTGCAAMDH Consensus sequence (reverse complement motif): HDYTTGCACACGDHBH Alignment: HDYTTGCACACGDHBH -------VCACGTBV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_primary Reverse Complement Reverse Complement Backward 4 8 0.000574345 Species: Mus musculus Consensus sequence (original motif): DDASCACGTGBTBVDD Consensus sequence (reverse complement motif): HHVBABCACGTGSTHD Alignment: HHVBABCACGTGSTHD -----VCACGTBV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Original Motif Original Motif Backward 9 8 0.00642455 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: YDYBDHTMCACGTGGADDBMDGT -------VBACGTGV-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00084 Gmeb1_primary Original Motif Reverse Complement Backward 5 8 0.0131171 Species: Mus musculus Consensus sequence (original motif): BHBBKKACGTMMVDBVB Consensus sequence (reverse complement motif): BVVDVRYACGTRYVBHB Alignment: BVVDVRYACGTRYVBHB -----VBACGTGV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Reverse Complement Original Motif Backward 8 8 0.014006 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: RDHDBVDTCACGTGASBHVHDH -------VCACGTBV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Original Motif Original Motif Forward 5 8 0.0184296 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: VBHHVCAGGTGCDVDHD ----VBACGTGV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00068 Eomes_secondary Reverse Complement Reverse Complement Backward 3 8 0.0188154 Species: Mus musculus Consensus sequence (original motif): VBVDAGGTGTYGVBBV Consensus sequence (reverse complement motif): VVBVCKACACCTHVBV Alignment: VVBVCKACACCTHVBV ------VCACGTBV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00026 Zscan4_primary Original Motif Original Motif Backward 9 8 0.0189568 Species: Mus musculus Consensus sequence (original motif): DHVDTGTGCACAYAHDH Consensus sequence (reverse complement motif): HDHTMTGTGCACADVHD Alignment: DHVDTGTGCACAYAHDH -VBACGTGV-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_primary Original Motif Reverse Complement Backward 8 8 0.0198987 Species: Mus musculus Consensus sequence (original motif): HHDATGTGCACATAMDH Consensus sequence (reverse complement motif): HHRTATGTGCACATHHD Alignment: HHRTATGTGCACATHHD --VBACGTGV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Reverse Complement Original Motif Backward 4 8 0.021967 Species: Mus musculus Consensus sequence (original motif): BBGHCACGCGACDD Consensus sequence (reverse complement motif): HDGTCGCGTGDCVB Alignment: BBGHCACGCGACDD ---VCACGTBV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 34 Motif name: HNF4A Consensus sequence (original motif): RGGBCAAAGKYCA Consensus sequence (reverse complement motif): TGMYCTTTGBCCK ************************************************************************ Best Matches for Motif ID 34 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00058 Tcf3_primary Original Motif Original Motif Backward 2 13 0.0357776 Species: Mus musculus Consensus sequence (original motif): HHHASATCAAAGVRHHH Consensus sequence (reverse complement motif): HHHKVCTTTGATSTHHH Alignment: HHHASATCAAAGVRHHH ---RGGBCAAAGKYCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00054 Tcf7_primary Original Motif Original Motif Backward 2 13 0.0357792 Species: Mus musculus Consensus sequence (original motif): BHHASATCAAAGGAHHH Consensus sequence (reverse complement motif): HHHTCCTTTGATSTHHV Alignment: BHHASATCAAAGGAHHH ---RGGBCAAAGKYCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Original Motif Reverse Complement Forward 4 13 0.0359011 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD ---RGGBCAAAGKYCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00083 Tcf7l2_primary Original Motif Reverse Complement Backward 2 13 0.0360786 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATSTDDV Consensus sequence (reverse complement motif): BDDASATCAAAGGMDDD Alignment: BDDASATCAAAGGMDDD ---RGGBCAAAGKYCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_secondary Original Motif Original Motif Backward 4 13 0.0405764 Species: Mus musculus Consensus sequence (original motif): HVDDVCAGATGKYHBBV Consensus sequence (reverse complement motif): VBBDMYCATCTGVHHBH Alignment: HVDDVCAGATGKYHBBV -RGGBCAAAGKYCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Reverse Complement Reverse Complement Forward 2 13 0.0409915 Species: Mus musculus Consensus sequence (original motif): HBDDDAACAAAGRVBHH Consensus sequence (reverse complement motif): HHBBMCTTTGTTHDDBH Alignment: HHBBMCTTTGTTHDDBH -TGMYCTTTGBCCK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00101 Sox12_secondary Reverse Complement Reverse Complement Forward 1 13 0.0413218 Species: Mus musculus Consensus sequence (original motif): VVDBASACAAAGRADH Consensus sequence (reverse complement motif): HDTMCTTTGTSTVDBB Alignment: HDTMCTTTGTSTVDBB TGMYCTTTGBCCK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Reverse Complement Reverse Complement Forward 2 13 0.0421105 Species: Mus musculus Consensus sequence (original motif): HBDDRAACAAAGRABHH Consensus sequence (reverse complement motif): HHBTMCTTTGTTMDDVH Alignment: HHBTMCTTTGTTMDDVH -TGMYCTTTGBCCK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00086 Irf3_secondary Original Motif Original Motif Forward 1 13 0.0442004 Species: Mus musculus Consensus sequence (original motif): DDAGAADGGDSCDV Consensus sequence (reverse complement motif): BHGSDCCDTTCTHH Alignment: DDAGAADGGDSCDV RGGBCAAAGKYCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00082 Zfp187_secondary Original Motif Reverse Complement Backward 1 13 0.0446884 Species: Mus musculus Consensus sequence (original motif): DDGMCCTBGTCCHYHV Consensus sequence (reverse complement motif): VHMDGGACVAGGRCDH Alignment: DDGMCCTBGTCCHYHV ---RGGBCAAAGKYCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 35 Motif name: INSM1 Consensus sequence (original motif): TGYCAGGGGGCR Consensus sequence (reverse complement motif): MGCCCCCTGMCA ************************************************************************ Best Matches for Motif ID 35 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_secondary Original Motif Reverse Complement Backward 4 12 0.00085101 Species: Mus musculus Consensus sequence (original motif): DDDTWCCCCCCGGDRVH Consensus sequence (reverse complement motif): HVKDCCGGGGGGWADDD Alignment: HVKDCCGGGGGGWADDD --TGYCAGGGGGCR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Original Motif Reverse Complement Backward 6 12 0.00406431 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BVVHAGGGGGCGRDHHB TGYCAGGGGGCR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00047 Zbtb7b_primary Original Motif Reverse Complement Forward 3 12 0.00486866 Species: Mus musculus Consensus sequence (original motif): DDVCCCCCCHAAWHB Consensus sequence (reverse complement motif): VHWTTHGGGGGGVDD Alignment: VHWTTHGGGGGGVDD --TGYCAGGGGGCR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_secondary Original Motif Original Motif Forward 1 12 0.00862553 Species: Mus musculus Consensus sequence (original motif): VKBBAGGGGTCAHDBBH Consensus sequence (reverse complement motif): DBBHHTGACCCCTBBYV Alignment: VKBBAGGGGTCAHDBBH TGYCAGGGGGCR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00024 Glis2_primary Original Motif Reverse Complement Forward 2 12 0.00936306 Species: Mus musculus Consensus sequence (original motif): HHHVGACCCCCCVBRD Consensus sequence (reverse complement motif): HKBBGGGGGGTCVHHH Alignment: HKBBGGGGGGTCVHHH -TGYCAGGGGGCR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00066 Hnf4a_primary Original Motif Original Motif Forward 1 12 0.0123592 Species: Mus musculus Consensus sequence (original motif): BDBVMGGGGTCAABHDV Consensus sequence (reverse complement motif): BHHVTTGACCCCYVVDB Alignment: BDBVMGGGGTCAABHDV TGYCAGGGGGCR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Reverse Complement Original Motif Forward 3 12 0.0155167 Species: Mus musculus Consensus sequence (original motif): HCCGCCCCCGCAHB Consensus sequence (reverse complement motif): VHTGCGGGGGCGGH Alignment: HCCGCCCCCGCAHB --MGCCCCCTGMCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Reverse Complement Original Motif Backward 2 12 0.0176638 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: HVBCCCCCCCCMHHHB ---MGCCCCCTGMCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_secondary Original Motif Reverse Complement Backward 5 12 0.0182432 Species: Mus musculus Consensus sequence (original motif): HBBBCCGCCCCWHHHV Consensus sequence (reverse complement motif): BHHHWGGGGCGGBBVH Alignment: BHHHWGGGGCGGBBVH TGYCAGGGGGCR---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00070 Gcm1_secondary Reverse Complement Reverse Complement Backward 4 12 0.0200587 Species: Mus musculus Consensus sequence (original motif): DDBVHATAGGGGRBRMB Consensus sequence (reverse complement motif): BYMBKCCCCTATDVBHD Alignment: BYMBKCCCCTATDVBHD --MGCCCCCTGMCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 36 Motif name: Klf4 Consensus sequence (original motif): DGGGYGKGGC Consensus sequence (reverse complement motif): GCCYCMCCCD ************************************************************************ Best Matches for Motif ID 36 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Reverse Complement Forward 4 10 0 Species: Mus musculus Consensus sequence (original motif): HBDRCCMCGCCCHHHD Consensus sequence (reverse complement motif): DHHDGGGCGRGGKHBH Alignment: DHHDGGGCGRGGKHBH ---DGGGYGKGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Reverse Complement Original Motif Forward 4 10 0.0153308 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: DBCCCCCCCCCCMYC ---GCCYCMCCCD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_secondary Original Motif Original Motif Forward 3 10 0.0186791 Species: Mus musculus Consensus sequence (original motif): BDWAGGCGTGBCHHD Consensus sequence (reverse complement motif): HHDGBCACGCCTWDB Alignment: BDWAGGCGTGBCHHD --DGGGYGKGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Reverse Complement Original Motif Forward 3 10 0.0218399 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: HVBCCCCCCCCMHHHB --GCCYCMCCCD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Reverse Complement Original Motif Forward 1 10 0.0249586 Species: Mus musculus Consensus sequence (original motif): HCCGCCCCCGCAHB Consensus sequence (reverse complement motif): VHTGCGGGGGCGGH Alignment: HCCGCCCCCGCAHB GCCYCMCCCD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Original Motif Reverse Complement Forward 7 10 0.0299159 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BVVHAGGGGGCGRDHHB ------DGGGYGKGGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Original Motif Reverse Complement Forward 5 10 0.0308595 Species: Mus musculus Consensus sequence (original motif): DHHBCCCCGCCAHHBHB Consensus sequence (reverse complement motif): BHBHDTGGCGGGGBDHD Alignment: BHBHDTGGCGGGGBDHD ----DGGGYGKGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00047 Zbtb7b_primary Reverse Complement Original Motif Forward 1 10 0.0345891 Species: Mus musculus Consensus sequence (original motif): DDVCCCCCCHAAWHB Consensus sequence (reverse complement motif): VHWTTHGGGGGGVDD Alignment: VHWTTHGGGGGGVDD GCCYCMCCCD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_secondary Reverse Complement Original Motif Forward 3 10 0.0346735 Species: Mus musculus Consensus sequence (original motif): HBBBCCGCCCCWHHHV Consensus sequence (reverse complement motif): BHHHWGGGGCGGBBVH Alignment: HBBBCCGCCCCWHHHV --GCCYCMCCCD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondaryReverse Complement Original Motif Backward 8 10 0.0351496 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH ------GCCYCMCCCD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 37 Motif name: MIZF Consensus sequence (original motif): BAACGTCCGC Consensus sequence (reverse complement motif): GCGGACGTTV ************************************************************************ Best Matches for Motif ID 37 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00419 Spic Original Motif Reverse Complement Forward 1 10 0 Species: Mus musculus Consensus sequence (original motif): VAAAGMGGAAGTWD Consensus sequence (reverse complement motif): DWACTTCCRCTTTB Alignment: DWACTTCCRCTTTB BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00409 Elf5 Original Motif Reverse Complement Forward 1 10 0.00379999 Species: Mus musculus Consensus sequence (original motif): BWAHSMGGAAGTWD Consensus sequence (reverse complement motif): DWACTTCCRSDTWV Alignment: BWAHSMGGAAGTWD BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00413 Elf4 Original Motif Original Motif Backward 5 10 0.0124101 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGKWTH Consensus sequence (reverse complement motif): HAWYCCGGAAGTHBBD Alignment: DBBHACTTCCGGKWTH --BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00404 Elf2 Original Motif Original Motif Forward 3 10 0.0128348 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGDWDB Consensus sequence (reverse complement motif): BDWDCCGGAAGTHBBD Alignment: DBBHACTTCCGGDWDB --BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00085 Sfpi1_primary Original Motif Reverse Complement Forward 1 10 0.0141516 Species: Mus musculus Consensus sequence (original motif): BDAWGVGGAAGTDH Consensus sequence (reverse complement motif): HDACTTCCBCWTDV Alignment: BDAWGVGGAAGTDH BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00423 Gm5454 Reverse Complement Reverse Complement Backward 3 10 0.0144665 Species: Mus musculus Consensus sequence (original motif): VDHHACTTCCGGTHVH Consensus sequence (reverse complement motif): DVHACCGGAAGTHDDV Alignment: DVHACCGGAAGTHDDV ----GCGGACGTTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00412 Etv5 Reverse Complement Reverse Complement Backward 3 10 0.0155825 Species: Mus musculus Consensus sequence (original motif): VDHAACWTCCGGTHHH Consensus sequence (reverse complement motif): DHHACCGGAWGTTDDV Alignment: DHHACCGGAWGTTDDV ----GCGGACGTTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00015 Ehf_primary Reverse Complement Original Motif Forward 6 10 0.0162018 Species: Mus musculus Consensus sequence (original motif): VBDABCCGGAAGTDD Consensus sequence (reverse complement motif): DDACTTCCGGBTHBB Alignment: VBDABCCGGAAGTDD -----GCGGACGTTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00418 Etv6 Original Motif Original Motif Forward 4 10 0.0171234 Species: Mus musculus Consensus sequence (original motif): DVHBTACTTCCGGHTHB Consensus sequence (reverse complement motif): BHAHCCGGAAGTABDVD Alignment: DVHBTACTTCCGGHTHB ---BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00421 Etv1 Reverse Complement Original Motif Backward 3 10 0.0184147 Species: Mus musculus Consensus sequence (original motif): MVHBACCGGAAGTVDVH Consensus sequence (reverse complement motif): HBDBACTTCCGGTBHVY Alignment: MVHBACCGGAAGTVDVH -----GCGGACGTTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 38 Motif name: Myc Consensus sequence (original motif): VGCACGTGGH Consensus sequence (reverse complement motif): DCCACGTGCV ************************************************************************ Best Matches for Motif ID 38 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_primary Original Motif Original Motif Forward 3 10 0 Species: Mus musculus Consensus sequence (original motif): DDASCACGTGBTBVDD Consensus sequence (reverse complement motif): HHVBABCACGTGSTHD Alignment: DDASCACGTGBTBVDD --VGCACGTGGH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Reverse Complement Reverse Complement Forward 8 10 0.00631885 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM -------DCCACGTGCV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Reverse Complement Reverse Complement Backward 7 10 0.00821668 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM ------DCCACGTGCV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Original Motif Reverse Complement Backward 4 10 0.0140005 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: DHDBHGCACCTGBDDVB ----VGCACGTGGH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Original Motif Original Motif Backward 3 10 0.0308912 Species: Mus musculus Consensus sequence (original motif): BBGHCACGCGACDD Consensus sequence (reverse complement motif): HDGTCGCGTGDCVB Alignment: BBGHCACGCGACDD --VGCACGTGGH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00165 Titf1 Reverse Complement Original Motif Forward 4 10 0.0311723 Species: Mus musculus Consensus sequence (original motif): BVABCCACTTGAMHTT Consensus sequence (reverse complement motif): AAHYTCAAGTGGBTBV Alignment: BVABCCACTTGAMHTT ---DCCACGTGCV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00249 Nkx2-5 Reverse Complement Original Motif Backward 4 10 0.031308 Species: Mus musculus Consensus sequence (original motif): HDADCCACTTRAAWTT Consensus sequence (reverse complement motif): AAWTTMAAGTGGHTDH Alignment: HDADCCACTTRAAWTT ---DCCACGTGCV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00231 Nkx2-2 Reverse Complement Original Motif Forward 4 10 0.0334845 Species: Mus musculus Consensus sequence (original motif): HDVRCCACTTGARADBD Consensus sequence (reverse complement motif): DVDTKTCAAGTGGKBDH Alignment: HDVRCCACTTGARADBD ---DCCACGTGCV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00147 Nkx2-6 Reverse Complement Original Motif Backward 4 10 0.0345548 Species: Mus musculus Consensus sequence (original motif): DDADCCACTTAAVHTT Consensus sequence (reverse complement motif): AAHVTTAAGTGGHTDD Alignment: DDADCCACTTAAVHTT ---DCCACGTGCV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Original Motif Original Motif Forward 6 10 0.0363818 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VDWDARRGACGCGGWHGGAKHV -----VGCACGTGGH------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 39 Motif name: MYCMAX Consensus sequence (original motif): RASCACGTGGT Consensus sequence (reverse complement motif): ACCACGTGSTM ************************************************************************ Best Matches for Motif ID 39 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_primary Original Motif Reverse Complement Backward 3 11 0 Species: Mus musculus Consensus sequence (original motif): DDASCACGTGBTBVDD Consensus sequence (reverse complement motif): HHVBABCACGTGSTHD Alignment: HHVBABCACGTGSTHD ---RASCACGTGGT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Reverse Complement Reverse Complement Forward 8 11 0.025477 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM -------ACCACGTGSTM----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Original Motif Original Motif Forward 6 11 0.033078 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: RDHDBVDTCACGTGASBHVHDH -----RASCACGTGGT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Reverse Complement Original Motif Backward 4 11 0.0375583 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: VBHHVCAGGTGCDVDHD ---ACCACGTGSTM--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_secondary Original Motif Original Motif Forward 3 11 0.0452419 Species: Mus musculus Consensus sequence (original motif): HVDDVCAGATGKYHBBV Consensus sequence (reverse complement motif): VBBDMYCATCTGVHHBH Alignment: HVDDVCAGATGKYHBBV --RASCACGTGGT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00036 Myf6_primary Original Motif Original Motif Forward 4 11 0.0471968 Species: Mus musculus Consensus sequence (original motif): VVDBAACAGBTGBYHB Consensus sequence (reverse complement motif): BDKVCABCTGTTBDBV Alignment: VVDBAACAGBTGBYHB ---RASCACGTGGT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_primary Reverse Complement Original Motif Backward 4 11 0.0504418 Species: Mus musculus Consensus sequence (original motif): BBYVVCAGCTGCBVHHD Consensus sequence (reverse complement motif): HHDVVGCAGCTGVBKVB Alignment: BBYVVCAGCTGCBVHHD ---ACCACGTGSTM--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00084 Gmeb1_secondary Reverse Complement Reverse Complement Backward 3 11 0.0522039 Species: Mus musculus Consensus sequence (original motif): DGVBCRACGTYGTYHH Consensus sequence (reverse complement motif): HHMACKACGTMGBVCD Alignment: HHMACKACGTMGBVCD ---ACCACGTGSTM-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00165 Titf1 Reverse Complement Original Motif Forward 4 11 0.0554094 Species: Mus musculus Consensus sequence (original motif): BVABCCACTTGAMHTT Consensus sequence (reverse complement motif): AAHYTCAAGTGGBTBV Alignment: BVABCCACTTGAMHTT ---ACCACGTGSTM-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Original Motif Reverse Complement Forward 2 11 0.0557594 Species: Mus musculus Consensus sequence (original motif): BBGHCACGCGACDD Consensus sequence (reverse complement motif): HDGTCGCGTGDCVB Alignment: HDGTCGCGTGDCVB -RASCACGTGGT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 40 Motif name: Mycn Consensus sequence (original motif): HSCACGTGGC Consensus sequence (reverse complement motif): GCCACGTGSD ************************************************************************ Best Matches for Motif ID 40 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_primary Original Motif Original Motif Forward 3 10 0 Species: Mus musculus Consensus sequence (original motif): DDASCACGTGBTBVDD Consensus sequence (reverse complement motif): HHVBABCACGTGSTHD Alignment: DDASCACGTGBTBVDD --HSCACGTGGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Reverse Complement Reverse Complement Backward 7 10 0.00783793 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM -------GCCACGTGSD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Reverse Complement Reverse Complement Backward 7 10 0.0132858 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM ------GCCACGTGSD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Reverse Complement Original Motif Backward 5 10 0.0227933 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: VBHHVCAGGTGCDVDHD ---GCCACGTGSD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Original Motif Original Motif Forward 3 10 0.0257011 Species: Mus musculus Consensus sequence (original motif): BBGHCACGCGACDD Consensus sequence (reverse complement motif): HDGTCGCGTGDCVB Alignment: BBGHCACGCGACDD --HSCACGTGGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00165 Titf1 Reverse Complement Original Motif Backward 4 10 0.0344833 Species: Mus musculus Consensus sequence (original motif): BVABCCACTTGAMHTT Consensus sequence (reverse complement motif): AAHYTCAAGTGGBTBV Alignment: BVABCCACTTGAMHTT ---GCCACGTGSD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00231 Nkx2-2 Reverse Complement Original Motif Backward 5 10 0.035228 Species: Mus musculus Consensus sequence (original motif): HDVRCCACTTGARADBD Consensus sequence (reverse complement motif): DVDTKTCAAGTGGKBDH Alignment: HDVRCCACTTGARADBD ---GCCACGTGSD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00084 Gmeb1_primary Reverse Complement Reverse Complement Backward 4 10 0.0358581 Species: Mus musculus Consensus sequence (original motif): BHBBKKACGTMMVDBVB Consensus sequence (reverse complement motif): BVVDVRYACGTRYVBHB Alignment: BVVDVRYACGTRYVBHB ----GCCACGTGSD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00084 Gmeb1_secondary Original Motif Reverse Complement Backward 4 10 0.03725 Species: Mus musculus Consensus sequence (original motif): DGVBCRACGTYGTYHH Consensus sequence (reverse complement motif): HHMACKACGTMGBVCD Alignment: HHMACKACGTMGBVCD ---HSCACGTGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Original Motif Original Motif Forward 7 10 0.0383187 Species: Mus musculus Consensus sequence (original motif): WHVBVVMACGCGCGTCDYHWDH Consensus sequence (reverse complement motif): HDWHMHGACGCGCGTRBVVBHW Alignment: WHVBVVMACGCGCGTCDYHWDH ------HSCACGTGGC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 41 Motif name: MZF1_5-13 Consensus sequence (original motif): BKAGGGGDAD Consensus sequence (reverse complement motif): BTHCCCCTYB ************************************************************************ Best Matches for Motif ID 41 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_secondary Reverse Complement Original Motif Forward 4 10 0.0090535 Species: Mus musculus Consensus sequence (original motif): DDDTWCCCCCCGGDRVH Consensus sequence (reverse complement motif): HVKDCCGGGGGGWADDD Alignment: DDDTWCCCCCCGGDRVH ---BTHCCCCTYB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_secondary Original Motif Original Motif Backward 4 10 0.00910178 Species: Mus musculus Consensus sequence (original motif): BBHBGAGTGGGAHHDB Consensus sequence (reverse complement motif): BHHDTCCCACTCBDBV Alignment: BBHBGAGTGGGAHHDB ---BKAGGGGDAD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00070 Gcm1_secondary Original Motif Original Motif Backward 3 10 0.0101177 Species: Mus musculus Consensus sequence (original motif): DDBVHATAGGGGRBRMB Consensus sequence (reverse complement motif): BYMBKCCCCTATDVBHD Alignment: DDBVHATAGGGGRBRMB -----BKAGGGGDAD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Original Motif Reverse Complement Backward 6 10 0.0103225 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: GKRGGGGGGGGGGBD BKAGGGGDAD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_secondary Original Motif Reverse Complement Backward 2 10 0.0126235 Species: Mus musculus Consensus sequence (original motif): BHVDCCCCDCCCBDBH Consensus sequence (reverse complement motif): HVDVGGGHGGGGDBHB Alignment: HVDVGGGHGGGGDBHB -----BKAGGGGDAD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00013 Gabpa_secondary Original Motif Reverse Complement Forward 2 10 0.013531 Species: Mus musculus Consensus sequence (original motif): CYDBYWTCCSMHBVVH Consensus sequence (reverse complement motif): DBVVDRSGGAWKVHKG Alignment: DBVVDRSGGAWKVHKG -BKAGGGGDAD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Original Motif Reverse Complement Backward 4 10 0.0152996 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: BHHDYGGGGGGGGBVD ---BKAGGGGDAD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00055 Hbp1_secondary Reverse Complement Original Motif Forward 2 10 0.0176527 Species: Mus musculus Consensus sequence (original motif): DDDYCCCATTGTVHABH Consensus sequence (reverse complement motif): HBTHVACAATGGGMDHD Alignment: DDDYCCCATTGTVHABH -BTHCCCCTYB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Reverse Complement Original Motif Forward 6 10 0.0183345 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BDHHMCGCCCCCTHVBB -----BTHCCCCTYB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00239 Obox2 Original Motif Original Motif Forward 1 10 0.019782 Species: Mus musculus Consensus sequence (original motif): DBRGGGGGATTAAMTAH Consensus sequence (reverse complement motif): HTARTTAATCCCCCKBD Alignment: DBRGGGGGATTAAMTAH BKAGGGGDAD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 42 Motif name: NFKB1 Consensus sequence (original motif): GGGGRTTCCCC Consensus sequence (reverse complement motif): GGGGAAKCCCC ************************************************************************ Best Matches for Motif ID 42 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_secondary Original Motif Reverse Complement Backward 1 11 0.0371794 Species: Mus musculus Consensus sequence (original motif): DKKWDACCCCCAHTDDV Consensus sequence (reverse complement motif): VDDAHTGGGGGTHWYYD Alignment: DKKWDACCCCCAHTDDV ------GGGGRTTCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00088 Plagl1_secondary Original Motif Original Motif Backward 3 11 0.0407901 Species: Mus musculus Consensus sequence (original motif): DBHGGGGGGTACCHHHD Consensus sequence (reverse complement motif): DHDDGGTACCCCCCHBH Alignment: DBHGGGGGGTACCHHHD ----GGGGRTTCCCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00088 Plagl1_primary Original Motif Original Motif Forward 3 11 0.0459696 Species: Mus musculus Consensus sequence (original motif): BHDGGGGSSCCCCBVV Consensus sequence (reverse complement motif): VBVGGGGSSCCCCHHV Alignment: BHDGGGGSSCCCCBVV --GGGGRTTCCCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00176 Crx Reverse Complement Reverse Complement Forward 2 11 0.0464973 Species: Mus musculus Consensus sequence (original motif): YBWDGGGGATTARCCD Consensus sequence (reverse complement motif): DGGMTAATCCCCDWBK Alignment: DGGMTAATCCCCDWBK -GGGGAAKCCCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00265 Pitx3 Reverse Complement Reverse Complement Backward 3 11 0.048533 Species: Mus musculus Consensus sequence (original motif): VGGGGGATTAGCDDBC Consensus sequence (reverse complement motif): GBHDGCTAATCCCCCB Alignment: GBHDGCTAATCCCCCB ---GGGGAAKCCCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00216 Obox1 Reverse Complement Reverse Complement Backward 5 11 0.0502644 Species: Mus musculus Consensus sequence (original motif): DDARGGGGATTAACDHH Consensus sequence (reverse complement motif): DHDGTTAATCCCCKTDD Alignment: DHDGTTAATCCCCKTDD --GGGGAAKCCCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00239 Obox2 Reverse Complement Reverse Complement Backward 5 11 0.0515498 Species: Mus musculus Consensus sequence (original motif): DBRGGGGGATTAAMTAH Consensus sequence (reverse complement motif): HTARTTAATCCCCCKBD Alignment: HTARTTAATCCCCCKBD --GGGGAAKCCCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00160 Obox3 Reverse Complement Reverse Complement Forward 3 11 0.0520605 Species: Mus musculus Consensus sequence (original motif): HBVGGGGGATTAACWHH Consensus sequence (reverse complement motif): HHWGTTAATCCCCCBBH Alignment: HHWGTTAATCCCCCBBH --GGGGAAKCCCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00024 Glis2_primary Original Motif Reverse Complement Backward 1 11 0.052761 Species: Mus musculus Consensus sequence (original motif): HHHVGACCCCCCVBRD Consensus sequence (reverse complement motif): HKBBGGGGGGTCVHHH Alignment: HKBBGGGGGGTCVHHH -----GGGGRTTCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primaryReverse Complement Reverse Complement Forward 7 11 0.0555704 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: CBDMCMGGGTGGTCCHVBVBAH ------GGGGAAKCCCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 43 Motif name: NR1H2RXRA Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT ************************************************************************ Best Matches for Motif ID 43 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondaryReverse Complement Reverse Complement Backward 1 17 0.0538452 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: DVMHHDHKGACCCTCCTSVCBH -----GTTGACCTTTGACCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Original Motif Original Motif Backward 1 17 0.0545098 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: BDHDDADAGATAAGADHBDHVD -----AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Original Motif Reverse Complement Forward 2 16 0.521114 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD- -AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00083 Tcf7l2_primary Reverse Complement Original Motif Backward 2 16 0.527825 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATSTDDV Consensus sequence (reverse complement motif): BDDASATCAAAGGMDDD Alignment: -DDDYCCTTTGATSTDDV GTTGACCTTTGACCTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00054 Tcf7_primary Original Motif Original Motif Forward 2 16 0.531154 Species: Mus musculus Consensus sequence (original motif): BHHASATCAAAGGAHHH Consensus sequence (reverse complement motif): HHHTCCTTTGATSTHHV Alignment: BHHASATCAAAGGAHHH- -AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00058 Tcf3_primary Original Motif Original Motif Backward 2 16 0.531876 Species: Mus musculus Consensus sequence (original motif): HHHASATCAAAGVRHHH Consensus sequence (reverse complement motif): HHHKVCTTTGATSTHHH Alignment: -HHHASATCAAAGVRHHH AAAGGTCAAAGGTCAAC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Original Motif Original Motif Forward 2 16 0.544403 Species: Mus musculus Consensus sequence (original motif): HBDDRAACAAAGRABHH Consensus sequence (reverse complement motif): HHBTMCTTTGTTMDDVH Alignment: HBDDRAACAAAGRABHH- -AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Reverse Complement Reverse Complement Backward 2 16 0.544565 Species: Mus musculus Consensus sequence (original motif): HBDDDAACAAAGRVBHH Consensus sequence (reverse complement motif): HHBBMCTTTGTTHDDBH Alignment: -HHBBMCTTTGTTHDDBH GTTGACCTTTGACCTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00019 Zbtb12_primary Reverse Complement Reverse Complement Backward 2 16 0.550511 Species: Mus musculus Consensus sequence (original motif): BDHRBGTTCTAGATCVB Consensus sequence (reverse complement motif): BBGATCTAGAACBKHDB Alignment: -BBGATCTAGAACBKHDB GTTGACCTTTGACCTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_secondary Original Motif Original Motif Backward 2 16 0.552064 Species: Mus musculus Consensus sequence (original motif): HVDDVCAGATGKYHBBV Consensus sequence (reverse complement motif): VBBDMYCATCTGVHHBH Alignment: -HVDDVCAGATGKYHBBV AAAGGTCAAAGGTCAAC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 44 Motif name: NR4A2 Consensus sequence (original motif): AAGGTCAC Consensus sequence (reverse complement motif): GTGACCTT ************************************************************************ Best Matches for Motif ID 44 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00048 Rara Reverse Complement Reverse Complement Forward 4 8 0 Species: Mus musculus Consensus sequence (original motif): DHBHAAAGGTCACVHD Consensus sequence (reverse complement motif): HHVGTGACCTTTDVDD Alignment: HHVGTGACCTTTDVDD ---GTGACCTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_primary Original Motif Original Motif Backward 4 8 0.0074527 Species: Mus musculus Consensus sequence (original motif): DHBHAAAGGTCAHVHB Consensus sequence (reverse complement motif): BHVDTGACCTTTDVDD Alignment: DHBHAAAGGTCAHVHB -----AAGGTCAC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_primary Original Motif Original Motif Forward 6 8 0.01542 Species: Mus musculus Consensus sequence (original motif): DHDBCAAGGTCAHVBDH Consensus sequence (reverse complement motif): HHBVHTGACCTTGVDHD Alignment: DHDBCAAGGTCAHVBDH -----AAGGTCAC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_secondary Original Motif Original Motif Forward 6 8 0.0395644 Species: Mus musculus Consensus sequence (original motif): VBVBCSGGGTCAVBBH Consensus sequence (reverse complement motif): HVBVTGACCCSGBVBV Alignment: VBVBCSGGGTCAVBBH -----AAGGTCAC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00082 Zfp187_secondary Reverse Complement Original Motif Forward 1 8 0.0407874 Species: Mus musculus Consensus sequence (original motif): DDGMCCTBGTCCHYHV Consensus sequence (reverse complement motif): VHMDGGACVAGGRCDH Alignment: DDGMCCTBGTCCHYHV GTGACCTT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00053 Rxra_primary Reverse Complement Original Motif Forward 5 8 0.0422933 Species: Mus musculus Consensus sequence (original motif): DBHBDTGACCCCDHVHB Consensus sequence (reverse complement motif): VHBHDGGGGTCAHBHBD Alignment: DBHBDTGACCCCDHVHB ----GTGACCTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_secondary Original Motif Original Motif Backward 5 8 0.0447444 Species: Mus musculus Consensus sequence (original motif): VKBBAGGGGTCAHDBBH Consensus sequence (reverse complement motif): DBBHHTGACCCCTBBYV Alignment: VKBBAGGGGTCAHDBBH -----AAGGTCAC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00066 Hnf4a_secondary Original Motif Original Motif Forward 6 8 0.0481418 Species: Mus musculus Consensus sequence (original motif): BBHHAAAGTCCAMTHH Consensus sequence (reverse complement motif): HHAYTGGACTTTHDBV Alignment: BBHHAAAGTCCAMTHH -----AAGGTCAC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00197 Hoxc9 Reverse Complement Reverse Complement Forward 8 8 0.0497679 Species: Mus musculus Consensus sequence (original motif): VDVGGTCATTAAHHDB Consensus sequence (reverse complement motif): VDHHTTAATGACCBHV Alignment: VDHHTTAATGACCBHV -------GTGACCTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00035 Hic1_secondary Reverse Complement Original Motif Forward 5 8 0.0500062 Species: Mus musculus Consensus sequence (original motif): DBDDRTGCCCAWDHDV Consensus sequence (reverse complement motif): VHHDWTGGGCAMDHBH Alignment: DBDDRTGCCCAWDHDV ----GTGACCTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 45 Motif name: Pax5 Consensus sequence (original motif): DGVBCABTGDWGCGKRRCSR Consensus sequence (reverse complement motif): MSGKKRCGCWDCABTGBBCD ************************************************************************ Best Matches for Motif ID 45 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondary Original Motif Original Motif Backward 2 20 0.0499537 Species: Mus musculus Consensus sequence (original motif): DDRMHBACGCGYGCGTDGBBDB Consensus sequence (reverse complement motif): BDVBCDACGCKCGCGTBHRKHD Alignment: DDRMHBACGCGYGCGTDGBBDB -DGVBCABTGDWGCGKRRCSR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Original Motif Reverse Complement Forward 1 20 0.0520196 Species: Mus musculus Consensus sequence (original motif): WHVBVVMACGCGCGTCDYHWDH Consensus sequence (reverse complement motif): HDWHMHGACGCGCGTRBVVBHW Alignment: HDWHMHGACGCGCGTRBVVBHW DGVBCABTGDWGCGKRRCSR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Reverse Complement Backward 2 20 0.0542764 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK -DGVBCABTGDWGCGKRRCSR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Reverse Complement Reverse Complement Forward 3 20 0.0560636 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: DCATDBTGHGCATKMTTBRSWR --MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryOriginal Motif Reverse Complement Forward 1 20 0.0595671 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: HHBSHTCGTGRGTGGKGDBVWMV DGVBCABTGDWGCGKRRCSR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_primary Original Motif Original Motif Backward 4 20 0.0602559 Species: Mus musculus Consensus sequence (original motif): HADTBVADGATGCATCMTGMVHB Consensus sequence (reverse complement motif): VHVRCAYGATGCATCDTVVADTH Alignment: HADTBVADGATGCATCMTGMVHB DGVBCABTGDWGCGKRRCSR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Original Motif Backward 4 20 0.0607506 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB DGVBCABTGDWGCGKRRCSR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondary Reverse Complement Reverse Complement Backward 4 20 0.0611227 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: BDBBVBVGTAWCCAAGVBHBAGB MSGKKRCGCWDCABTGBBCD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Reverse Complement Original Motif Forward 3 20 0.0611361 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: RDHDBVDTCACGTGASBHVHDH --MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Original Motif Original Motif Forward 1 20 0.061403 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: GTVBDAATTGTVTGHGDDHKVB DGVBCABTGDWGCGKRRCSR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 46 Motif name: RORA_1 Consensus sequence (original motif): AWVDAGGTCA Consensus sequence (reverse complement motif): TGACCTDVWT ************************************************************************ Best Matches for Motif ID 46 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_primary Original Motif Original Motif Backward 5 10 0.0154749 Species: Mus musculus Consensus sequence (original motif): DHBHAAAGGTCAHVHB Consensus sequence (reverse complement motif): BHVDTGACCTTTDVDD Alignment: DHBHAAAGGTCAHVHB --AWVDAGGTCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_primary Reverse Complement Reverse Complement Forward 6 10 0.0176661 Species: Mus musculus Consensus sequence (original motif): DHDBCAAGGTCAHVBDH Consensus sequence (reverse complement motif): HHBVHTGACCTTGVDHD Alignment: HHBVHTGACCTTGVDHD -----TGACCTDVWT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00048 Rara Original Motif Original Motif Forward 3 10 0.0189599 Species: Mus musculus Consensus sequence (original motif): DHBHAAAGGTCACVHD Consensus sequence (reverse complement motif): HHVGTGACCTTTDVDD Alignment: DHBHAAAGGTCACVHD --AWVDAGGTCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_secondary Original Motif Original Motif Backward 5 10 0.0331999 Species: Mus musculus Consensus sequence (original motif): VBVBCSGGGTCAVBBH Consensus sequence (reverse complement motif): HVBVTGACCCSGBVBV Alignment: VBVBCSGGGTCAVBBH --AWVDAGGTCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00066 Hnf4a_primary Original Motif Original Motif Forward 3 10 0.0341771 Species: Mus musculus Consensus sequence (original motif): BDBVMGGGGTCAABHDV Consensus sequence (reverse complement motif): BHHVTTGACCCCYVVDB Alignment: BDBVMGGGGTCAABHDV --AWVDAGGTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00053 Rxra_primary Reverse Complement Original Motif Forward 6 10 0.0363566 Species: Mus musculus Consensus sequence (original motif): DBHBDTGACCCCDHVHB Consensus sequence (reverse complement motif): VHBHDGGGGTCAHBHBD Alignment: DBHBDTGACCCCDHVHB -----TGACCTDVWT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_secondary Original Motif Original Motif Forward 3 10 0.0391284 Species: Mus musculus Consensus sequence (original motif): VKBBAGGGGTCAHDBBH Consensus sequence (reverse complement motif): DBBHHTGACCCCTBBYV Alignment: VKBBAGGGGTCAHDBBH --AWVDAGGTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00035 Hic1_secondary Reverse Complement Original Motif Backward 2 10 0.0444205 Species: Mus musculus Consensus sequence (original motif): DBDDRTGCCCAWDHDV Consensus sequence (reverse complement motif): VHHDWTGGGCAMDHBH Alignment: DBDDRTGCCCAWDHDV -----TGACCTDVWT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Original Motif Reverse Complement Forward 1 10 0.0461434 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: RDHDBVDTCACGTGASBHVHDH AWVDAGGTCA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primaryReverse Complement Original Motif Backward 3 10 0.0489571 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH -----------TGACCTDVWT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 47 Motif name: RXRRAR_DR5 Consensus sequence (original motif): RGKTCABVVRGAGGTCA Consensus sequence (reverse complement motif): TGACCTCKVVBTGAYCK ************************************************************************ Best Matches for Motif ID 47 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondaryOriginal Motif Original Motif Forward 1 17 0.0585087 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: DVTTVVCVYGGHGGYCHHDMYB RGKTCABVVRGAGGTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Original Motif Original Motif Backward 1 17 0.0709955 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: GTVBDAATTGTVTGHGDDHKVB -----RGKTCABVVRGAGGTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondaryOriginal Motif Reverse Complement Forward 1 17 0.075055 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: DVVTTVGTGGGHGGYAMHWHHHY RGKTCABVVRGAGGTCA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primaryOriginal Motif Original Motif Forward 7 17 0.0758824 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BBBDVVRGACCACCCAVGABBAB ------RGKTCABVVRGAGGTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondary Reverse Complement Original Motif Backward 6 17 0.0759953 Species: Mus musculus Consensus sequence (original motif): HBHDVBWGATHBTATCRVBHHH Consensus sequence (reverse complement motif): HHHBBMGATAVHATCWVVDHVH Alignment: HBHDVBWGATHBTATCRVBHHH TGACCTCKVVBTGAYCK----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_primaryOriginal Motif Original Motif Backward 1 17 0.0760211 Species: Mus musculus Consensus sequence (original motif): DTVBDDRGACCACCCAGDWDGBH Consensus sequence (reverse complement motif): DBCDWHCTGGGTGGTCMDHBBAH Alignment: DTVBDDRGACCACCCAGDWDGBH ------RGKTCABVVRGAGGTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primaryReverse Complement Original Motif Backward 7 17 0.0763398 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH TGACCTCKVVBTGAYCK------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Reverse Complement Forward 1 17 0.0768658 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH RGKTCABVVRGAGGTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Original Motif Reverse Complement Forward 5 17 0.0784072 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM ----RGKTCABVVRGAGGTCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Original Motif Forward 1 17 0.0794665 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB RGKTCABVVRGAGGTCA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 48 Motif name: Tcfcp2l1 Consensus sequence (original motif): CCAGYYHVADCCRG Consensus sequence (reverse complement motif): CKGGDTBDMMCTGG ************************************************************************ Best Matches for Motif ID 48 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondary Original Motif Original Motif Backward 5 14 0.0527249 Species: Mus musculus Consensus sequence (original motif): HBHDVBWGATHBTATCRVBHHH Consensus sequence (reverse complement motif): HHHBBMGATAVHATCWVVDHVH Alignment: HBHDVBWGATHBTATCRVBHHH ----CCAGYYHVADCCRG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Original Motif Backward 1 14 0.0551691 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH --------CCAGYYHVADCCRG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_secondary Original Motif Original Motif Backward 1 14 0.0560983 Species: Mus musculus Consensus sequence (original motif): HHRCCBBWGGDCDB Consensus sequence (reverse complement motif): BDGHCCWBVGGKDH Alignment: HHRCCBBWGGDCDB CCAGYYHVADCCRG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00013 Gabpa_secondary Original Motif Original Motif Backward 3 14 0.0566467 Species: Mus musculus Consensus sequence (original motif): CYDBYWTCCSMHBVVH Consensus sequence (reverse complement motif): DBVVDRSGGAWKVHKG Alignment: CYDBYWTCCSMHBVVH CCAGYYHVADCCRG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00075 Sox15_secondary Original Motif Reverse Complement Backward 1 14 0.0577636 Species: Mus musculus Consensus sequence (original motif): BBVAATGDMATTHVA Consensus sequence (reverse complement motif): TVDAATYDCATTVVV Alignment: BBVAATGDMATTHVA -CCAGYYHVADCCRG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00096 Sox13_secondary Reverse Complement Original Motif Forward 4 14 0.0587893 Species: Mus musculus Consensus sequence (original motif): DDDHTGGGTGGGHAHHD Consensus sequence (reverse complement motif): DHHTHCCCACCCAHDDH Alignment: DDDHTGGGTGGGHAHHD ---CKGGDTBDMMCTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Original Motif Reverse Complement Forward 3 14 0.0590238 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC --CCAGYYHVADCCRG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryOriginal Motif Original Motif Forward 9 14 0.0596904 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH --------CCAGYYHVADCCRG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primaryOriginal Motif Original Motif Backward 1 14 0.0597695 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BBBDVVRGACCACCCAVGABBAB ---------CCAGYYHVADCCRG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondaryReverse Complement Original Motif Backward 2 14 0.0598357 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: HVGVSAGGAGGGTCYHHHHYVH -------CKGGDTBDMMCTGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 06-18-2018 23:13:48 Runtime: 761.535 seconds MOTIFSIM is written by Ngoc Tam L. 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