**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 5 Number of top significant motifs: 10 Number of best matches: 10 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Motif tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # DREME_DM230.txt 1 1 MEME_DM230.txt 20 2 PScanChIP_DM230.txt 14 3 RSAT_peak-motifs_DM230.txt 10 4 W-ChIPMotifs_DM230.txt 11 5 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ********************************************************************** Best Matches in Database for Each Motif (Highest to Lowest) ***************************************************************** Dataset #: 1 Motif ID: 1 Motif name: Motif 1 Consensus sequence (original motif): GGCGGGGC Consensus sequence (reverse complement motif): GCCCCGCC ************************************************************************ Best Matches for Motif ID 1 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Reverse Complement Original Motif Backward 6 8 0 Species: Mus musculus Consensus sequence (original motif): HBDRCCMCGCCCHHHD Consensus sequence (reverse complement motif): DHHDGGGCGRGGKHBH Alignment: HBDRCCMCGCCCHHHD ---GCCCCGCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Original Motif Reverse Complement Forward 7 8 0.00617043 Species: Mus musculus Consensus sequence (original motif): DHHBCCCCGCCAHHBHB Consensus sequence (reverse complement motif): BHBHDTGGCGGGGBDHD Alignment: BHBHDTGGCGGGGBDHD ------GGCGGGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_secondary Original Motif Original Motif Forward 5 8 0.0145996 Species: Mus musculus Consensus sequence (original motif): BDWAGGCGTGBCHHD Consensus sequence (reverse complement motif): HHDGBCACGCCTWDB Alignment: BDWAGGCGTGBCHHD ----GGCGGGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Reverse Complement Original Motif Forward 2 8 0.0233506 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BDHHMCGCCCCCTHVBB -GCCCCGCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00024 Glis2_primary Reverse Complement Original Motif Forward 5 8 0.0291232 Species: Mus musculus Consensus sequence (original motif): HHHVGACCCCCCVBRD Consensus sequence (reverse complement motif): HKBBGGGGGGTCVHHH Alignment: HHHVGACCCCCCVBRD ----GCCCCGCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Original Motif Reverse Complement Forward 6 8 0.0338469 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: BHHDYGGGGGGGGBVD -----GGCGGGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Original Motif Reverse Complement Backward 4 8 0.0361147 Species: Mus musculus Consensus sequence (original motif): HCCGCCCCCGCAHB Consensus sequence (reverse complement motif): VHTGCGGGGGCGGH Alignment: VHTGCGGGGGCGGH ---GGCGGGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_primary Reverse Complement Original Motif Forward 8 8 0.0374146 Species: Mus musculus Consensus sequence (original motif): DTVBDDRGACCACCCAGDWDGBH Consensus sequence (reverse complement motif): DBCDWHCTGGGTGGTCMDHBBAH Alignment: DTVBDDRGACCACCCAGDWDGBH -------GCCCCGCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primary Reverse Complement Original Motif Forward 9 8 0.0376381 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: ABBBBVVRGACCACCCACRDBBM --------GCCCCGCC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Original Motif Reverse Complement Forward 4 8 0.0392043 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: GKRGGGGGGGGGGBD ---GGCGGGGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 2 Motif name: Motif 2 Consensus sequence (original motif): RGRAGARRGARRAR Consensus sequence (reverse complement motif): MTMMTCMMTCTKCK ************************************************************************ Best Matches for Motif ID 2 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00013 Gabpa_secondary Original Motif Reverse Complement Backward 3 14 0.0378622 Species: Mus musculus Consensus sequence (original motif): CYDBYWTCCSMHBVVH Consensus sequence (reverse complement motif): DBVVDRSGGAWKVHKG Alignment: DBVVDRSGGAWKVHKG RGRAGARRGARRAR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00101 Sox12_secondary Original Motif Original Motif Forward 2 14 0.038148 Species: Mus musculus Consensus sequence (original motif): VVDBASACAAAGRADH Consensus sequence (reverse complement motif): HDTMCTTTGTSTVDBB Alignment: VVDBASACAAAGRADH -RGRAGARRGARRAR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00058 Tcf3_secondary Original Motif Original Motif Backward 2 14 0.039618 Species: Mus musculus Consensus sequence (original motif): DVBSBDAHAHAHAHH Consensus sequence (reverse complement motif): HHTHTHTHTDBSBVD Alignment: DVBSBDAHAHAHAHH RGRAGARRGARRAR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Reverse Complement Original Motif Backward 9 14 0.0407385 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: MWSMBAARRATGCDCABHATGD MTMMTCMMTCTKCK-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Original Motif Reverse Complement Backward 3 14 0.0409403 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BVVHAGGGGGCGRDHHB -RGRAGARRGARRAR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_secondary Original Motif Reverse Complement Forward 1 14 0.0411988 Species: Mus musculus Consensus sequence (original motif): BHVDCCCCDCCCBDBH Consensus sequence (reverse complement motif): HVDVGGGHGGGGDBHB Alignment: HVDVGGGHGGGGDBHB RGRAGARRGARRAR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00059 Arid5a_secondary Original Motif Original Motif Backward 1 14 0.0412606 Species: Mus musculus Consensus sequence (original motif): BDYDVAATACGADDBVV Consensus sequence (reverse complement motif): BBVDDTCGTATTVDMHB Alignment: BDYDVAATACGADDBVV ---RGRAGARRGARRAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondary Original Motif Reverse Complement Forward 3 14 0.0419643 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK --RGRAGARRGARRAR------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_secondary Original Motif Original Motif Backward 1 14 0.0420085 Species: Mus musculus Consensus sequence (original motif): VBDDAAAAAAAAMVBHH Consensus sequence (reverse complement motif): HHVBYTTTTTTTTDDVV Alignment: VBDDAAAAAAAAMVBHH ---RGRAGARRGARRAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Original Motif Reverse Complement Forward 1 14 0.0430662 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: DBCCCCCCCCCCMYC RGRAGARRGARRAR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 3 Motif name: Motif 3 Consensus sequence (original motif): AWAAAWTWAAASWA Consensus sequence (reverse complement motif): TWSTTTWAWTTTWT ************************************************************************ Best Matches for Motif ID 3 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00121 Hoxd10 Reverse Complement Reverse Complement Backward 2 14 0.0232094 Species: Mus musculus Consensus sequence (original motif): VDKVYAATAAAATDDDH Consensus sequence (reverse complement motif): HDDDATTTTATTKVRDB Alignment: HDDDATTTTATTKVRDB --TWSTTTWAWTTTWT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_secondary Original Motif Original Motif Forward 3 14 0.024404 Species: Mus musculus Consensus sequence (original motif): VBDDAAAAAAAAMVBHH Consensus sequence (reverse complement motif): HHVBYTTTTTTTTDDVV Alignment: VBDDAAAAAAAAMVBHH --AWAAAWTWAAASWA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00255 Dbx1 Original Motif Original Motif Forward 3 14 0.0273798 Species: Mus musculus Consensus sequence (original motif): HARTHAATTAWTAVDHD Consensus sequence (reverse complement motif): DHDBTAWTAATTHAKTH Alignment: HARTHAATTAWTAVDHD --AWAAAWTWAAASWA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00090 Elf3_secondary Original Motif Original Motif Backward 2 14 0.0293574 Species: Mus musculus Consensus sequence (original motif): DBTHHAAAAAAAAVHDH Consensus sequence (reverse complement motif): DDHBTTTTTTTTHDAVH Alignment: DBTHHAAAAAAAAVHDH --AWAAAWTWAAASWA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00037 Zfp105_primary Original Motif Original Motif Backward 2 14 0.0316804 Species: Mus musculus Consensus sequence (original motif): HDYAAAHAAMAADHD Consensus sequence (reverse complement motif): HHHTTRTTDTTTKDH Alignment: HDYAAAHAAMAADHD AWAAAWTWAAASWA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00134 Hoxb13 Reverse Complement Reverse Complement Forward 2 14 0.031986 Species: Mus musculus Consensus sequence (original motif): VRHCCAATAAAAWHHV Consensus sequence (reverse complement motif): VDHWTTTTATTGGDKB Alignment: VDHWTTTTATTGGDKB -TWSTTTWAWTTTWT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00078 Arid3a_primary Original Motif Original Motif Backward 1 14 0.0323368 Species: Mus musculus Consensus sequence (original motif): VBBHTTAATTAAAMHHH Consensus sequence (reverse complement motif): DHHYTTTAATTAAHBBV Alignment: VBBHTTAATTAAAMHHH ---AWAAAWTWAAASWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00004 Sox14_primary Reverse Complement Reverse Complement Forward 3 14 0.0327495 Species: Mus musculus Consensus sequence (original motif): DHHAATTATAATWDDH Consensus sequence (reverse complement motif): DDDWATTATAATTHDH Alignment: DDDWATTATAATTHDH --TWSTTTWAWTTTWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00180 Hoxd13 Reverse Complement Reverse Complement Backward 2 14 0.0332268 Species: Mus musculus Consensus sequence (original motif): HDHYYAATAAAAHHHH Consensus sequence (reverse complement motif): HDHHTTTTATTKKHDD Alignment: HDHHTTTTATTKKHDD -TWSTTTWAWTTTWT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00097 Mtf1_secondary Original Motif Original Motif Forward 1 14 0.034592 Species: Mus musculus Consensus sequence (original motif): HDATAHDAAAHADV Consensus sequence (reverse complement motif): VDTHTTTHHTATDH Alignment: HDATAHDAAAHADV AWAAAWTWAAASWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 4 Motif name: Motif 4 Consensus sequence (original motif): AAAAWTTRCWT Consensus sequence (reverse complement motif): AWGKAAWTTTT ************************************************************************ Best Matches for Motif ID 4 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00044 Mafk_secondary Original Motif Original Motif Backward 3 11 0.022187 Species: Mus musculus Consensus sequence (original motif): VHAAAAADTGCAHBR Consensus sequence (reverse complement motif): MBHTGCADTTTTTHV Alignment: VHAAAAADTGCAHBR --AAAAWTTRCWT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00075 Sox15_primary Reverse Complement Reverse Complement Backward 7 11 0.0318877 Species: Mus musculus Consensus sequence (original motif): HDDDDAACAATWRRBHD Consensus sequence (reverse complement motif): DHVKMWATTGTTHDHDH Alignment: DHVKMWATTGTTHDHDH AWGKAAWTTTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00091 Sox5_primary Reverse Complement Reverse Complement Backward 6 11 0.0333897 Species: Mus musculus Consensus sequence (original motif): DHDDGAACAATWDDHD Consensus sequence (reverse complement motif): DHDDWATTGTTCDDHD Alignment: DHDDWATTGTTCDDHD AWGKAAWTTTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00014 Sox17_primary Reverse Complement Reverse Complement Backward 4 11 0.0352391 Species: Mus musculus Consensus sequence (original motif): VDDAACAATTVAWHD Consensus sequence (reverse complement motif): DDWTBAATTGTTDDB Alignment: DDWTBAATTGTTDDB -AWGKAAWTTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00069 Sox1_secondary Reverse Complement Original Motif Forward 1 11 0.0357052 Species: Mus musculus Consensus sequence (original motif): HBDTAATTGTTABBV Consensus sequence (reverse complement motif): VBVTAACAATTADVD Alignment: HBDTAATTGTTABBV AWGKAAWTTTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00096 Sox13_primary Reverse Complement Reverse Complement Forward 1 11 0.0361647 Species: Mus musculus Consensus sequence (original motif): DHDRGAACAATWWDHW Consensus sequence (reverse complement motif): WHDWWATTGTTCKDHD Alignment: WHDWWATTGTTCKDHD AWGKAAWTTTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00126 Dlx2 Original Motif Original Motif Backward 4 11 0.0370352 Species: Mus musculus Consensus sequence (original motif): VVDRTAATTABHHHAB Consensus sequence (reverse complement motif): BTDHHBTAATTAKDVV Alignment: VVDRTAATTABHHHAB --AAAAWTTRCWT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00074 Isgf3g_secondary Original Motif Original Motif Forward 4 11 0.0371842 Species: Mus musculus Consensus sequence (original motif): BVAAAACABDACHD Consensus sequence (reverse complement motif): DHGTDVTGTTTTVB Alignment: BVAAAACABDACHD ---AAAAWTTRCWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00170 Isl2 Reverse Complement Reverse Complement Backward 5 11 0.0377846 Species: Mus musculus Consensus sequence (original motif): MHHAAYYMATTAADWH Consensus sequence (reverse complement motif): HWDTTAATYKMTTHHR Alignment: HWDTTAATYKMTTHHR -AWGKAAWTTTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Reverse Complement Reverse Complement Forward 1 11 0.0386497 Species: Mus musculus Consensus sequence (original motif): HBDDDAACAAAGRVBHH Consensus sequence (reverse complement motif): HHBBMCTTTGTTHDDBH Alignment: HHBBMCTTTGTTHDDBH AWGKAAWTTTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 5 Motif name: Motif 5 Consensus sequence (original motif): AWTAAATAYAATTT Consensus sequence (reverse complement motif): AAATTKTATTTAWT ************************************************************************ Best Matches for Motif ID 5 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00121 Hoxd10 Reverse Complement Reverse Complement Backward 2 14 0.0258732 Species: Mus musculus Consensus sequence (original motif): VDKVYAATAAAATDDDH Consensus sequence (reverse complement motif): HDDDATTTTATTKVRDB Alignment: HDDDATTTTATTKVRDB --AAATTKTATTTAWT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00169 Lmx1b Reverse Complement Original Motif Backward 4 14 0.0275967 Species: Mus musculus Consensus sequence (original motif): VDWWWTTAATTAATDHB Consensus sequence (reverse complement motif): BHDATTAATTAAWWWHB Alignment: VDWWWTTAATTAATDHB AAATTKTATTTAWT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00212 Lhx5 Reverse Complement Reverse Complement Backward 4 14 0.0276125 Species: Mus musculus Consensus sequence (original motif): VDHATTAATTAAAWHHB Consensus sequence (reverse complement motif): VDHWTTTAATTAATHHV Alignment: VDHWTTTAATTAATHHV AAATTKTATTTAWT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00016 Sry_primary Original Motif Original Motif Forward 1 14 0.027741 Species: Mus musculus Consensus sequence (original motif): BHDHATTATAATDDDV Consensus sequence (reverse complement motif): VDDDATTATAATHDHV Alignment: BHDHATTATAATDDDV AWTAAATAYAATTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00180 Hoxd13 Reverse Complement Reverse Complement Forward 2 14 0.0290926 Species: Mus musculus Consensus sequence (original motif): HDHYYAATAAAAHHHH Consensus sequence (reverse complement motif): HDHHTTTTATTKKHDD Alignment: HDHHTTTTATTKKHDD -AAATTKTATTTAWT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00004 Sox14_primary Original Motif Original Motif Forward 1 14 0.029483 Species: Mus musculus Consensus sequence (original motif): DHHAATTATAATWDDH Consensus sequence (reverse complement motif): DDDWATTATAATTHDH Alignment: DHHAATTATAATWDDH AWTAAATAYAATTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00130 Lhx3 Reverse Complement Reverse Complement Backward 4 14 0.029893 Species: Mus musculus Consensus sequence (original motif): VDAATTAATTAAWWHHB Consensus sequence (reverse complement motif): VHHWWTTAATTAATTDV Alignment: VHHWWTTAATTAATTDV AAATTKTATTTAWT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00134 Hoxb13 Reverse Complement Reverse Complement Forward 2 14 0.030701 Species: Mus musculus Consensus sequence (original motif): VRHCCAATAAAAWHHV Consensus sequence (reverse complement motif): VDHWTTTTATTGGDKB Alignment: VDHWTTTTATTGGDKB -AAATTKTATTTAWT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00266 Prrx1 Reverse Complement Reverse Complement Backward 4 14 0.0314917 Species: Mus musculus Consensus sequence (original motif): VBAACTAATTARYTDVT Consensus sequence (reverse complement motif): AVDAKKTAATTAGTTVV Alignment: AVDAKKTAATTAGTTVV AAATTKTATTTAWT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00262 Lhx1 Reverse Complement Reverse Complement Backward 4 14 0.0319088 Species: Mus musculus Consensus sequence (original motif): VVDATTAATTAAWWAHB Consensus sequence (reverse complement motif): BHTWWTTAATTAATDVV Alignment: BHTWWTTAATTAATDVV AAATTKTATTTAWT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 6 Motif name: Motif 6 Consensus sequence (original motif): AATTYDGAARTAWW Consensus sequence (reverse complement motif): WWTAKTTCDKAATT ************************************************************************ Best Matches for Motif ID 6 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00015 Ehf_secondary Original Motif Reverse Complement Forward 2 14 0.0435331 Species: Mus musculus Consensus sequence (original motif): WDVDABTTCCKAHSDW Consensus sequence (reverse complement motif): WDSHTYGGAAVTDVDW Alignment: WDSHTYGGAAVTDVDW -AATTYDGAARTAWW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00044 Mafk_primary Original Motif Reverse Complement Backward 2 14 0.0443465 Species: Mus musculus Consensus sequence (original motif): DWAAAWTGCTGACTH Consensus sequence (reverse complement motif): HAGTCAGCAWTTTWD Alignment: HAGTCAGCAWTTTWD AATTYDGAARTAWW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_secondary Reverse Complement Reverse Complement Backward 1 14 0.0477209 Species: Mus musculus Consensus sequence (original motif): ADDDYAWAACAAMAHH Consensus sequence (reverse complement motif): HDTYTTGTTWTKDDDT Alignment: HDTYTTGTTWTKDDDT --WWTAKTTCDKAATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00255 Dbx1 Reverse Complement Reverse Complement Forward 3 14 0.0481558 Species: Mus musculus Consensus sequence (original motif): HARTHAATTAWTAVDHD Consensus sequence (reverse complement motif): DHDBTAWTAATTHAKTH Alignment: DHDBTAWTAATTHAKTH --WWTAKTTCDKAATT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00097 Mtf1_secondary Reverse Complement Reverse Complement Backward 1 14 0.0495241 Species: Mus musculus Consensus sequence (original motif): HDATAHDAAAHADV Consensus sequence (reverse complement motif): VDTHTTTHHTATDH Alignment: VDTHTTTHHTATDH WWTAKTTCDKAATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00262 Lhx1 Reverse Complement Reverse Complement Forward 2 14 0.0497972 Species: Mus musculus Consensus sequence (original motif): VVDATTAATTAAWWAHB Consensus sequence (reverse complement motif): BHTWWTTAATTAATDVV Alignment: BHTWWTTAATTAATDVV -WWTAKTTCDKAATT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Reverse Complement Reverse Complement Forward 9 14 0.0511395 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: WBHHHHHMDATTGTTHDHDVHH --------WWTAKTTCDKAATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00045 Mafb_primary Original Motif Reverse Complement Forward 4 14 0.0517233 Species: Mus musculus Consensus sequence (original motif): HAAWDTGCTGACDWARH Consensus sequence (reverse complement motif): DMTWDGTCAGCADWTTH Alignment: DMTWDGTCAGCADWTTH ---AATTYDGAARTAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00130 Lhx3 Reverse Complement Reverse Complement Forward 2 14 0.0519872 Species: Mus musculus Consensus sequence (original motif): VDAATTAATTAAWWHHB Consensus sequence (reverse complement motif): VHHWWTTAATTAATTDV Alignment: VHHWWTTAATTAATTDV -WWTAKTTCDKAATT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_primary Original Motif Original Motif Forward 1 14 0.0521736 Species: Mus musculus Consensus sequence (original motif): DWAATRTAAACAAWVVB Consensus sequence (reverse complement motif): VVVWTTGTTTAMATTWD Alignment: DWAATRTAAACAAWVVB AATTYDGAARTAWW--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 7 Motif name: Motif 7 Consensus sequence (original motif): CSKCCCCGCCCCSY Consensus sequence (reverse complement motif): MSGGGGCGGGGYSG ************************************************************************ Best Matches for Motif ID 7 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Reverse Complement Reverse Complement Backward 2 14 0.000548354 Species: Mus musculus Consensus sequence (original motif): HBDRCCMCGCCCHHHD Consensus sequence (reverse complement motif): DHHDGGGCGRGGKHBH Alignment: DHHDGGGCGRGGKHBH -MSGGGGCGGGGYSG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Original Motif Original Motif Forward 2 14 0.00741351 Species: Mus musculus Consensus sequence (original motif): DHHBCCCCGCCAHHBHB Consensus sequence (reverse complement motif): BHBHDTGGCGGGGBDHD Alignment: DHHBCCCCGCCAHHBHB -CSKCCCCGCCCCSY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Original Motif Original Motif Forward 1 14 0.0114155 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: HVBCCCCCCCCMHHHB CSKCCCCGCCCCSY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Original Motif Original Motif Forward 2 14 0.0133301 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: DBCCCCCCCCCCMYC -CSKCCCCGCCCCSY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondary Reverse Complement Reverse Complement Forward 4 14 0.0158143 Species: Mus musculus Consensus sequence (original motif): BHHBHCCGCCCCDHHHH Consensus sequence (reverse complement motif): HHHHDGGGGCGGDBHDV Alignment: HHHHDGGGGCGGDBHDV ---MSGGGGCGGGGYSG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_secondary Original Motif Reverse Complement Forward 2 14 0.0242521 Species: Mus musculus Consensus sequence (original motif): BBHBGAGTGGGAHHDB Consensus sequence (reverse complement motif): BHHDTCCCACTCBDBV Alignment: BHHDTCCCACTCBDBV -CSKCCCCGCCCCSY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_secondary Original Motif Original Motif Backward 2 14 0.0244083 Species: Mus musculus Consensus sequence (original motif): BHVDCCCCDCCCBDBH Consensus sequence (reverse complement motif): HVDVGGGHGGGGDBHB Alignment: BHVDCCCCDCCCBDBH -CSKCCCCGCCCCSY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primary Reverse Complement Reverse Complement Forward 5 14 0.0264047 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: YBVDMGTGGGTGGTCKVVBVBBT ----MSGGGGCGGGGYSG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Reverse Complement Reverse Complement Forward 7 14 0.0276053 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: HHBSHTCGTGRGTGGKGDBVWMV ------MSGGGGCGGGGYSG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primary Reverse Complement Reverse Complement Backward 5 14 0.0290826 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BTBVTCVTGGGTGGTCMVVDVBB -----MSGGGGCGGGGYSG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 8 Motif name: Motif 8 Consensus sequence (original motif): AAATRWTAAAATCA Consensus sequence (reverse complement motif): TGATTTTAWKATTT ************************************************************************ Best Matches for Motif ID 8 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00173 Hoxc13 Reverse Complement Reverse Complement Backward 3 14 0.0325737 Species: Mus musculus Consensus sequence (original motif): HHDBCTCRTAAAAWHD Consensus sequence (reverse complement motif): DHWTTTTAMGAGBDHH Alignment: DHWTTTTAMGAGBDHH TGATTTTAWKATTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00235 Hoxc11 Reverse Complement Reverse Complement Backward 3 14 0.036026 Species: Mus musculus Consensus sequence (original motif): HAADGTCGTAAAAHDD Consensus sequence (reverse complement motif): HDHTTTTACGACDTTH Alignment: HDHTTTTACGACDTTH TGATTTTAWKATTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00183 Hoxa13 Reverse Complement Reverse Complement Forward 1 14 0.0380573 Species: Mus musculus Consensus sequence (original motif): HDHBCTCGTAAAAWBD Consensus sequence (reverse complement motif): DVWTTTTACGAGBHDH Alignment: DVWTTTTACGAGBHDH TGATTTTAWKATTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00246 Hoxa11 Reverse Complement Reverse Complement Forward 1 14 0.039136 Species: Mus musculus Consensus sequence (original motif): HDADGTCGTAAAAHDD Consensus sequence (reverse complement motif): DDDTTTTACGACDTDH Alignment: DDDTTTTACGACDTDH TGATTTTAWKATTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00180 Hoxd13 Original Motif Original Motif Forward 2 14 0.0391372 Species: Mus musculus Consensus sequence (original motif): HDHYYAATAAAAHHHH Consensus sequence (reverse complement motif): HDHHTTTTATTKKHDD Alignment: HDHYYAATAAAAHHHH -AAATRWTAAAATCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00117 Hoxd11 Reverse Complement Reverse Complement Forward 2 14 0.039319 Species: Mus musculus Consensus sequence (original motif): HHDVGTCGTAAAAHHHD Consensus sequence (reverse complement motif): DDDHTTTTACGACVDHH Alignment: DDDHTTTTACGACVDHH -TGATTTTAWKATTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00207 Hoxb9 Original Motif Original Motif Backward 2 14 0.0397774 Species: Mus musculus Consensus sequence (original motif): VRRGCMATAAAAHHHD Consensus sequence (reverse complement motif): HDHHTTTTATRGCKMV Alignment: VRRGCMATAAAAHHHD -AAATRWTAAAATCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00121 Hoxd10 Original Motif Original Motif Forward 2 14 0.0397808 Species: Mus musculus Consensus sequence (original motif): VDKVYAATAAAATDDDH Consensus sequence (reverse complement motif): HDDDATTTTATTKVRDB Alignment: VDKVYAATAAAATDDDH -AAATRWTAAAATCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00177 Hoxd12 Reverse Complement Reverse Complement Backward 3 14 0.0400538 Species: Mus musculus Consensus sequence (original motif): HHDVGTCGTAAAAHHHD Consensus sequence (reverse complement motif): DHDHTTTTACGACVDHD Alignment: DHDHTTTTACGACVDHD -TGATTTTAWKATTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00016 Sry_primary Original Motif Reverse Complement Forward 1 14 0.0409601 Species: Mus musculus Consensus sequence (original motif): BHDHATTATAATDDDV Consensus sequence (reverse complement motif): VDDDATTATAATHDHV Alignment: BHDHATTATAATDDDV AAATRWTAAAATCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 9 Motif name: Motif 9 Consensus sequence (original motif): AATHATATWTHAAA Consensus sequence (reverse complement motif): TTTDAWATATHATT ************************************************************************ Best Matches for Motif ID 9 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00090 Elf3_secondary Reverse Complement Original Motif Backward 2 14 0.0521335 Species: Mus musculus Consensus sequence (original motif): DBTHHAAAAAAAAVHDH Consensus sequence (reverse complement motif): DDHBTTTTTTTTHDAVH Alignment: DBTHHAAAAAAAAVHDH --TTTDAWATATHATT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00255 Dbx1 Reverse Complement Reverse Complement Forward 3 14 0.0522843 Species: Mus musculus Consensus sequence (original motif): HARTHAATTAWTAVDHD Consensus sequence (reverse complement motif): DHDBTAWTAATTHAKTH Alignment: DHDBTAWTAATTHAKTH --TTTDAWATATHATT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00091 Sox5_secondary Original Motif Original Motif Backward 2 14 0.0548459 Species: Mus musculus Consensus sequence (original motif): DHDCATMATTDASDD Consensus sequence (reverse complement motif): DHSTDAATYATGDHD Alignment: DHDCATMATTDASDD AATHATATWTHAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00121 Hoxd10 Original Motif Reverse Complement Backward 1 14 0.0549685 Species: Mus musculus Consensus sequence (original motif): VDKVYAATAAAATDDDH Consensus sequence (reverse complement motif): HDDDATTTTATTKVRDB Alignment: HDDDATTTTATTKVRDB ---AATHATATWTHAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00078 Arid3a_primary Original Motif Original Motif Backward 4 14 0.0553164 Species: Mus musculus Consensus sequence (original motif): VBBHTTAATTAAAMHHH Consensus sequence (reverse complement motif): DHHYTTTAATTAAHBBV Alignment: VBBHTTAATTAAAMHHH AATHATATWTHAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00169 Lmx1b Reverse Complement Original Motif Backward 1 14 0.0554285 Species: Mus musculus Consensus sequence (original motif): VDWWWTTAATTAATDHB Consensus sequence (reverse complement motif): BHDATTAATTAAWWWHB Alignment: VDWWWTTAATTAATDHB ---TTTDAWATATHATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00141 Vsx1 Original Motif Reverse Complement Backward 4 14 0.0554615 Species: Mus musculus Consensus sequence (original motif): CVHRTTAATTAAHDAHB Consensus sequence (reverse complement motif): VHTDHTTAATTAAMHVG Alignment: VHTDHTTAATTAAMHVG AATHATATWTHAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00024 Glis2_secondary Reverse Complement Reverse Complement Forward 1 14 0.0558193 Species: Mus musculus Consensus sequence (original motif): HDTATTAHTAAAVV Consensus sequence (reverse complement motif): BVTTTAHTAATADH Alignment: BVTTTAHTAATADH TTTDAWATATHATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Reverse Complement Reverse Complement Backward 2 14 0.0563339 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: HBHDVHDTCTTATCTHTDDHDV -------TTTDAWATATHATT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00194 Irx4 Reverse Complement Reverse Complement Forward 3 14 0.0570128 Species: Mus musculus Consensus sequence (original motif): WDHDWACATGTWAWABD Consensus sequence (reverse complement motif): DBTWTWACATGTWDHDW Alignment: DBTWTWACATGTWDHDW --TTTDAWATATHATT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 10 Motif name: Motif 10 Consensus sequence (original motif): TTTCATAAWT Consensus sequence (reverse complement motif): AWTTATGAAA ************************************************************************ Best Matches for Motif ID 10 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00118 Pou4f3 Original Motif Reverse Complement Backward 5 10 0.017789 Species: Mus musculus Consensus sequence (original motif): HVTTATTAATKADKHC Consensus sequence (reverse complement motif): GHYHTYATTAATAAVH Alignment: GHYHTYATTAATAAVH --TTTCATAAWT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00211 Pou3f3 Original Motif Original Motif Backward 3 10 0.0192304 Species: Mus musculus Consensus sequence (original motif): HADDTATGCATAATDDA Consensus sequence (reverse complement motif): TDDATTATGCATADDTH Alignment: HADDTATGCATAATDDA -----TTTCATAAWT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00179 Pou2f3 Reverse Complement Original Motif Forward 1 10 0.0193076 Species: Mus musculus Consensus sequence (original motif): BHDTATGCAAATBHDV Consensus sequence (reverse complement motif): BHHVATTTGCATAHHV Alignment: BHDTATGCAAATBHDV AWTTATGAAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00191 Pou2f2 Original Motif Reverse Complement Backward 1 10 0.0200501 Species: Mus musculus Consensus sequence (original motif): BHDTATGCAAATDHDV Consensus sequence (reverse complement motif): BHHDATTTGCATAHHV Alignment: BHDTATGCAAATDHDV ------TTTCATAAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00130 Lhx3 Original Motif Reverse Complement Backward 4 10 0.020314 Species: Mus musculus Consensus sequence (original motif): VDAATTAATTAAWWHHB Consensus sequence (reverse complement motif): VHHWWTTAATTAATTDV Alignment: VHHWWTTAATTAATTDV ----TTTCATAAWT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00212 Lhx5 Original Motif Reverse Complement Backward 4 10 0.0203295 Species: Mus musculus Consensus sequence (original motif): VDHATTAATTAAAWHHB Consensus sequence (reverse complement motif): VDHWTTTAATTAATHHV Alignment: VDHWTTTAATTAATHHV ----TTTCATAAWT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00169 Lmx1b Original Motif Original Motif Forward 5 10 0.0232405 Species: Mus musculus Consensus sequence (original motif): VDWWWTTAATTAATDHB Consensus sequence (reverse complement motif): BHDATTAATTAAWWWHB Alignment: VDWWWTTAATTAATDHB ----TTTCATAAWT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00045 Mafb_secondary Original Motif Original Motif Forward 4 10 0.0250697 Species: Mus musculus Consensus sequence (original motif): HVDTTGCAAAAWWDH Consensus sequence (reverse complement motif): HDWWTTTTGCAADBD Alignment: HVDTTGCAAAAWWDH ---TTTCATAAWT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00199 Six4 Original Motif Reverse Complement Backward 1 10 0.0256033 Species: Mus musculus Consensus sequence (original motif): ADDHATGACACCBHBBV Consensus sequence (reverse complement motif): BBVHVGGTGTCATHDDT Alignment: ADDHATGACACCBHBBV -------TTTCATAAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00173 Hoxc13 Original Motif Original Motif Backward 4 10 0.0262559 Species: Mus musculus Consensus sequence (original motif): HHDBCTCRTAAAAWHD Consensus sequence (reverse complement motif): DHWTTTTAMGAGBDHH Alignment: HHDBCTCRTAAAAWHD ---TTTCATAAWT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 11 Motif name: Motif 11 Consensus sequence (original motif): ATTTWATGAAA Consensus sequence (reverse complement motif): TTTCATWAAAT ************************************************************************ Best Matches for Motif ID 11 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00130 Lhx3 Reverse Complement Reverse Complement Forward 5 11 0.0235917 Species: Mus musculus Consensus sequence (original motif): VDAATTAATTAAWWHHB Consensus sequence (reverse complement motif): VHHWWTTAATTAATTDV Alignment: VHHWWTTAATTAATTDV ----TTTCATWAAAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00212 Lhx5 Original Motif Reverse Complement Backward 4 11 0.0238582 Species: Mus musculus Consensus sequence (original motif): VDHATTAATTAAAWHHB Consensus sequence (reverse complement motif): VDHWTTTAATTAATHHV Alignment: VDHWTTTAATTAATHHV ---ATTTWATGAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00173 Hoxc13 Reverse Complement Original Motif Forward 4 11 0.024458 Species: Mus musculus Consensus sequence (original motif): HHDBCTCRTAAAAWHD Consensus sequence (reverse complement motif): DHWTTTTAMGAGBDHH Alignment: HHDBCTCRTAAAAWHD ---TTTCATWAAAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00169 Lmx1b Reverse Complement Original Motif Forward 5 11 0.0247146 Species: Mus musculus Consensus sequence (original motif): VDWWWTTAATTAATDHB Consensus sequence (reverse complement motif): BHDATTAATTAAWWWHB Alignment: VDWWWTTAATTAATDHB ----TTTCATWAAAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00188 Lmx1a Original Motif Original Motif Forward 3 11 0.0250542 Species: Mus musculus Consensus sequence (original motif): CVHHTTAATTAAWWWHB Consensus sequence (reverse complement motif): BDWWWTTAATTAAHHVG Alignment: CVHHTTAATTAAWWWHB --ATTTWATGAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00197 Hoxc9 Original Motif Reverse Complement Forward 3 11 0.0275369 Species: Mus musculus Consensus sequence (original motif): VDVGGTCATTAAHHDB Consensus sequence (reverse complement motif): VDHHTTAATGACCBHV Alignment: VDHHTTAATGACCBHV --ATTTWATGAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00117 Hoxd11 Original Motif Reverse Complement Backward 4 11 0.028378 Species: Mus musculus Consensus sequence (original motif): HHDVGTCGTAAAAHHHD Consensus sequence (reverse complement motif): DDDHTTTTACGACVDHH Alignment: DDDHTTTTACGACVDHH ---ATTTWATGAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00213 Hoxa9 Reverse Complement Original Motif Forward 3 11 0.0286621 Species: Mus musculus Consensus sequence (original motif): DCGGYCATWAAAWTADW Consensus sequence (reverse complement motif): WDTAWTTTWATGKCCGD Alignment: DCGGYCATWAAAWTADW --TTTCATWAAAT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00121 Hoxd10 Reverse Complement Original Motif Backward 5 11 0.0288394 Species: Mus musculus Consensus sequence (original motif): VDKVYAATAAAATDDDH Consensus sequence (reverse complement motif): HDDDATTTTATTKVRDB Alignment: VDKVYAATAAAATDDDH --TTTCATWAAAT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00183 Hoxa13 Reverse Complement Original Motif Backward 3 11 0.028941 Species: Mus musculus Consensus sequence (original motif): HDHBCTCGTAAAAWBD Consensus sequence (reverse complement motif): DVWTTTTACGAGBHDH Alignment: HDHBCTCGTAAAAWBD ---TTTCATWAAAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 12 Motif name: Motif 12 Consensus sequence (original motif): AAAACAAA Consensus sequence (reverse complement motif): TTTGTTTT ************************************************************************ Best Matches for Motif ID 12 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Original Motif Original Motif Backward 7 8 0 Species: Mus musculus Consensus sequence (original motif): HBDDDAACAAAGRVBHH Consensus sequence (reverse complement motif): HHBBMCTTTGTTHDDBH Alignment: HBDDDAACAAAGRVBHH ---AAAACAAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Original Motif Original Motif Backward 7 8 0.000282957 Species: Mus musculus Consensus sequence (original motif): HBDDRAACAAAGRABHH Consensus sequence (reverse complement motif): HHBTMCTTTGTTMDDVH Alignment: HBDDRAACAAAGRABHH ---AAAACAAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_primary Reverse Complement Reverse Complement Forward 4 8 0.00309128 Species: Mus musculus Consensus sequence (original motif): DDAATGTAAACAAAVVB Consensus sequence (reverse complement motif): BBVTTTGTTTACATTDD Alignment: BBVTTTGTTTACATTDD ---TTTGTTTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_primary Reverse Complement Reverse Complement Forward 4 8 0.00620509 Species: Mus musculus Consensus sequence (original motif): DWAATRTAAACAAWVVB Consensus sequence (reverse complement motif): VVVWTTGTTTAMATTWD Alignment: VVVWTTGTTTAMATTWD ---TTTGTTTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_primary Reverse Complement Reverse Complement Forward 4 8 0.00680733 Species: Mus musculus Consensus sequence (original motif): HDHADGTAAACAAAVVH Consensus sequence (reverse complement motif): DVVTTTGTTTACDTHDH Alignment: DVVTTTGTTTACDTHDH ---TTTGTTTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00041 Foxj1_primary Original Motif Original Motif Forward 5 8 0.0130585 Species: Mus musculus Consensus sequence (original motif): HDHRTAAACAAAHDDD Consensus sequence (reverse complement motif): DDDHTTTGTTTAMHDH Alignment: HDHRTAAACAAAHDDD ----AAAACAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_secondary Reverse Complement Reverse Complement Forward 4 8 0.0137227 Species: Mus musculus Consensus sequence (original motif): ADDDYAWAACAAMAHH Consensus sequence (reverse complement motif): HDTYTTGTTWTKDDDT Alignment: HDTYTTGTTWTKDDDT ---TTTGTTTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_primary Reverse Complement Reverse Complement Forward 4 8 0.0160723 Species: Mus musculus Consensus sequence (original motif): HHWAWGTAAAYAAAVDB Consensus sequence (reverse complement motif): BDVTTTKTTTACWTWHH Alignment: BDVTTTKTTTACWTWHH ---TTTGTTTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00101 Sox12_primary Original Motif Reverse Complement Forward 5 8 0.0161675 Species: Mus musculus Consensus sequence (original motif): THATTGTTVTHAWH Consensus sequence (reverse complement motif): DWTHAVAACAATHA Alignment: DWTHAVAACAATHA ----AAAACAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_secondary Reverse Complement Reverse Complement Backward 7 8 0.0164735 Species: Mus musculus Consensus sequence (original motif): HDBAHCAWAACADWDVD Consensus sequence (reverse complement motif): DVHWDTGTTWTGDTBDH Alignment: DVHWDTGTTWTGDTBDH ---TTTGTTTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 13 Motif name: Motif 13 Consensus sequence (original motif): AAAGATTT Consensus sequence (reverse complement motif): AAATCTTT ************************************************************************ Best Matches for Motif ID 13 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00114 Homez Reverse Complement Original Motif Forward 4 8 0.00327586 Species: Mus musculus Consensus sequence (original motif): AHWWMATCGTTTTBADD Consensus sequence (reverse complement motif): HDTVAAAACGATRWWHT Alignment: AHWWMATCGTTTTBADD ---AAATCTTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00148 Hdx Reverse Complement Original Motif Forward 7 8 0.0107572 Species: Mus musculus Consensus sequence (original motif): DDKDHGAAATCAHHBHV Consensus sequence (reverse complement motif): BDBDHTGATTTCDHYDD Alignment: DDKDHGAAATCAHHBHV ------AAATCTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00080 Gata5_secondary Original Motif Original Motif Backward 7 8 0.0119733 Species: Mus musculus Consensus sequence (original motif): VVBHRAGATATCWDHBB Consensus sequence (reverse complement motif): VVHHWGATATCTMHBBV Alignment: VVBHRAGATATCWDHBB ---AAAGATTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00059 Arid5a_primary Original Motif Reverse Complement Backward 2 8 0.0140725 Species: Mus musculus Consensus sequence (original motif): VYAATATTGVDADH Consensus sequence (reverse complement motif): HDTDVCAATATTMV Alignment: HDTDVCAATATTMV -----AAAGATTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Original Motif Reverse Complement Forward 9 8 0.0151544 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD --------AAAGATTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00208 Obox5_3963.2 Original Motif Original Motif Backward 7 8 0.015824 Species: Mus musculus Consensus sequence (original motif): VRVAGGGATTAAHTVWV Consensus sequence (reverse complement motif): VWBAHTTAATCCCTVKB Alignment: VRVAGGGATTAAHTVWV ---AAAGATTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00167 En1 Reverse Complement Reverse Complement Forward 6 8 0.0159173 Species: Mus musculus Consensus sequence (original motif): VVVAACTAATTARKDV Consensus sequence (reverse complement motif): VHRKTAATTAGTTVVV Alignment: VHRKTAATTAGTTVVV -----AAATCTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00145 Barhl2 Reverse Complement Reverse Complement Backward 4 8 0.0164085 Species: Mus musculus Consensus sequence (original motif): HAMAAHCAATTAABHH Consensus sequence (reverse complement motif): HHBTTAATTGDTTYTH Alignment: HHBTTAATTGDTTYTH -----AAATCTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00125 Pitx2 Original Motif Original Motif Forward 4 8 0.0166506 Species: Mus musculus Consensus sequence (original motif): DDDVRGGATTAATHDDH Consensus sequence (reverse complement motif): DDDDATTAATCCMBDHD Alignment: DDDVRGGATTAATHDDH ---AAAGATTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Reverse Complement Reverse Complement Backward 6 8 0.0204535 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: HBHDVHDTCTTATCTHTDDHDV ---------AAATCTTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 14 Motif name: Motif 14 Consensus sequence (original motif): AWAAATAA Consensus sequence (reverse complement motif): TTATTTWT ************************************************************************ Best Matches for Motif ID 14 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Reverse Complement Reverse Complement Backward 6 8 0.00506466 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: HBHDVHDTCTTATCTHTDDHDV ---------TTATTTWT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_primary Original Motif Original Motif Backward 5 8 0.00546278 Species: Mus musculus Consensus sequence (original motif): DWAATRTAAACAAWVVB Consensus sequence (reverse complement motif): VVVWTTGTTTAMATTWD Alignment: DWAATRTAAACAAWVVB -----AWAAATAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00118 Pou4f3 Reverse Complement Reverse Complement Backward 5 8 0.00832205 Species: Mus musculus Consensus sequence (original motif): HVTTATTAATKADKHC Consensus sequence (reverse complement motif): GHYHTYATTAATAAVH Alignment: GHYHTYATTAATAAVH ----TTATTTWT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00037 Zfp105_primary Reverse Complement Reverse Complement Backward 5 8 0.00912866 Species: Mus musculus Consensus sequence (original motif): HDYAAAHAAMAADHD Consensus sequence (reverse complement motif): HHHTTRTTDTTTKDH Alignment: HHHTTRTTDTTTKDH ---TTATTTWT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_primary Original Motif Original Motif Backward 5 8 0.0105685 Species: Mus musculus Consensus sequence (original motif): HDHADGTAAACAAAVVH Consensus sequence (reverse complement motif): DVVTTTGTTTACDTHDH Alignment: HDHADGTAAACAAAVVH -----AWAAATAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_primary Original Motif Original Motif Forward 6 8 0.0141517 Species: Mus musculus Consensus sequence (original motif): DDAATGTAAACAAAVVB Consensus sequence (reverse complement motif): BBVTTTGTTTACATTDD Alignment: DDAATGTAAACAAAVVB -----AWAAATAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00180 Hoxd13 Reverse Complement Reverse Complement Forward 7 8 0.0142824 Species: Mus musculus Consensus sequence (original motif): HDHYYAATAAAAHHHH Consensus sequence (reverse complement motif): HDHHTTTTATTKKHDD Alignment: HDHHTTTTATTKKHDD ------TTATTTWT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_primary Original Motif Original Motif Backward 5 8 0.0155566 Species: Mus musculus Consensus sequence (original motif): HHWAWGTAAAYAAAVDB Consensus sequence (reverse complement motif): BDVTTTKTTTACWTWHH Alignment: HHWAWGTAAAYAAAVDB -----AWAAATAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00200 Nkx6-1_2825.1 Original Motif Original Motif Forward 2 8 0.0158439 Species: Mus musculus Consensus sequence (original motif): DVHAATTAATTAMYBBG Consensus sequence (reverse complement motif): CBVMRTAATTAATTHBH Alignment: DVHAATTAATTAMYBBG -AWAAATAA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00105 Pou3f4 Original Motif Original Motif Forward 3 8 0.0159057 Species: Mus musculus Consensus sequence (original motif): DVHTAATTAATTADDDB Consensus sequence (reverse complement motif): BDDDTAATTAATTAHBD Alignment: DVHTAATTAATTADDDB --AWAAATAA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 15 Motif name: Motif 15 Consensus sequence (original motif): ATMACAATAAAA Consensus sequence (reverse complement motif): TTTTATTGTYAT ************************************************************************ Best Matches for Motif ID 15 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00180 Hoxd13 Reverse Complement Reverse Complement Backward 1 12 0.00878905 Species: Mus musculus Consensus sequence (original motif): HDHYYAATAAAAHHHH Consensus sequence (reverse complement motif): HDHHTTTTATTKKHDD Alignment: HDHHTTTTATTKKHDD ----TTTTATTGTYAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00134 Hoxb13 Original Motif Original Motif Forward 1 12 0.0162131 Species: Mus musculus Consensus sequence (original motif): VRHCCAATAAAAWHHV Consensus sequence (reverse complement motif): VDHWTTTTATTGGDKB Alignment: VRHCCAATAAAAWHHV ATMACAATAAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00121 Hoxd10 Original Motif Original Motif Forward 1 12 0.0246749 Species: Mus musculus Consensus sequence (original motif): VDKVYAATAAAATDDDH Consensus sequence (reverse complement motif): HDDDATTTTATTKVRDB Alignment: VDKVYAATAAAATDDDH ATMACAATAAAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00091 Sox5_primary Reverse Complement Reverse Complement Backward 4 12 0.0247927 Species: Mus musculus Consensus sequence (original motif): DHDDGAACAATWDDHD Consensus sequence (reverse complement motif): DHDDWATTGTTCDDHD Alignment: DHDDWATTGTTCDDHD -TTTTATTGTYAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00207 Hoxb9 Original Motif Original Motif Backward 5 12 0.0248315 Species: Mus musculus Consensus sequence (original motif): VRRGCMATAAAAHHHD Consensus sequence (reverse complement motif): HDHHTTTTATRGCKMV Alignment: VRRGCMATAAAAHHHD ATMACAATAAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Original Motif Original Motif Backward 6 12 0.0268436 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: HHBDHDDAACAATDRHHHHHBW -----ATMACAATAAAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00051 Sox8_primary Reverse Complement Original Motif Forward 3 12 0.02954 Species: Mus musculus Consensus sequence (original motif): DDATBWATTGTTHHDDD Consensus sequence (reverse complement motif): DDDHDAACAATWBATDD Alignment: DDATBWATTGTTHHDDD --TTTTATTGTYAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00064 Sox18_primary Reverse Complement Original Motif Forward 1 12 0.0314917 Species: Mus musculus Consensus sequence (original motif): BWBHATTGTTBTHDHH Consensus sequence (reverse complement motif): HHDHABAACAATHBWV Alignment: BWBHATTGTTBTHDHH TTTTATTGTYAT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00096 Sox13_primary Original Motif Original Motif Forward 4 12 0.0318712 Species: Mus musculus Consensus sequence (original motif): DHDRGAACAATWWDHW Consensus sequence (reverse complement motif): WHDWWATTGTTCKDHD Alignment: DHDRGAACAATWWDHW ---ATMACAATAAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00014 Sox17_primary Reverse Complement Reverse Complement Forward 3 12 0.0332895 Species: Mus musculus Consensus sequence (original motif): VDDAACAATTVAWHD Consensus sequence (reverse complement motif): DDWTBAATTGTTDDB Alignment: DDWTBAATTGTTDDB --TTTTATTGTYAT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 16 Motif name: Motif 16 Consensus sequence (original motif): ACAAWTRATTTTGA Consensus sequence (reverse complement motif): TCAAAATKAWTTGT ************************************************************************ Best Matches for Motif ID 16 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Original Motif Original Motif Backward 1 14 0.0530035 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: HHBDHDDAACAATDRHHHHHBW --------ACAAWTRATTTTGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00158 Pou1f1 Reverse Complement Reverse Complement Backward 3 14 0.059328 Species: Mus musculus Consensus sequence (original motif): DVDTAATTAATTADDDB Consensus sequence (reverse complement motif): BDHDTAATTAATTADBH Alignment: BDHDTAATTAATTADBH -TCAAAATKAWTTGT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00128 Pou3f2 Reverse Complement Reverse Complement Forward 3 14 0.0618019 Species: Mus musculus Consensus sequence (original motif): VDDAATTAATTARBDHD Consensus sequence (reverse complement motif): HHDVMTAATTAATTDDV Alignment: HHDVMTAATTAATTDDV --TCAAAATKAWTTGT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00105 Pou3f4 Reverse Complement Reverse Complement Forward 2 14 0.0620147 Species: Mus musculus Consensus sequence (original motif): DVHTAATTAATTADDDB Consensus sequence (reverse complement motif): BDDDTAATTAATTAHBD Alignment: BDDDTAATTAATTAHBD -TCAAAATKAWTTGT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00200 Nkx6-1_2825.1 Reverse Complement Reverse Complement Backward 2 14 0.0623004 Species: Mus musculus Consensus sequence (original motif): DVHAATTAATTAMYBBG Consensus sequence (reverse complement motif): CBVMRTAATTAATTHBH Alignment: CBVMRTAATTAATTHBH --TCAAAATKAWTTGT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00167 En1 Original Motif Original Motif Forward 2 14 0.0634894 Species: Mus musculus Consensus sequence (original motif): VVVAACTAATTARKDV Consensus sequence (reverse complement motif): VHRKTAATTAGTTVVV Alignment: VVVAACTAATTARKDV -ACAAWTRATTTTGA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00146 Pou6f1_3733.1 Reverse Complement Original Motif Forward 3 14 0.0650456 Species: Mus musculus Consensus sequence (original motif): VHHVATAATGAGSTDDH Consensus sequence (reverse complement motif): DHDASCTCATTATVHHB Alignment: VHHVATAATGAGSTDDH --TCAAAATKAWTTGT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00145 Barhl2 Original Motif Original Motif Backward 2 14 0.0651148 Species: Mus musculus Consensus sequence (original motif): HAMAAHCAATTAABHH Consensus sequence (reverse complement motif): HHBTTAATTGDTTYTH Alignment: HAMAAHCAATTAABHH -ACAAWTRATTTTGA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00168 Hoxd8 Original Motif Reverse Complement Forward 3 14 0.0654698 Species: Mus musculus Consensus sequence (original motif): TAADTAATTAATRGHTH Consensus sequence (reverse complement motif): HADCMATTAATTADTTA Alignment: HADCMATTAATTADTTA --ACAAWTRATTTTGA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00129 Pou3f1 Original Motif Original Motif Backward 2 14 0.0654983 Species: Mus musculus Consensus sequence (original motif): DVBTAATTAATTAABTH Consensus sequence (reverse complement motif): DAVTTAATTAATTAVBD Alignment: DVBTAATTAATTAABTH --ACAAWTRATTTTGA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 17 Motif name: Motif 17 Consensus sequence (original motif): AAAAATGAAT Consensus sequence (reverse complement motif): ATTCATTTTT ************************************************************************ Best Matches for Motif ID 17 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00055 Hbp1_primary Original Motif Original Motif Forward 4 10 0.00216896 Species: Mus musculus Consensus sequence (original motif): HHDWTSAATGAATDDB Consensus sequence (reverse complement motif): VDHATTCATTSAWDDH Alignment: HHDWTSAATGAATDDB ---AAAAATGAAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00145 Barhl2 Original Motif Original Motif Forward 1 10 0.010273 Species: Mus musculus Consensus sequence (original motif): HAMAAHCAATTAABHH Consensus sequence (reverse complement motif): HHBTTAATTGDTTYTH Alignment: HAMAAHCAATTAABHH AAAAATGAAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00171 Msx3 Reverse Complement Reverse Complement Forward 3 10 0.0106868 Species: Mus musculus Consensus sequence (original motif): VAHAACYAATTAABHH Consensus sequence (reverse complement motif): HHVTTAATTKGTTHTV Alignment: HHVTTAATTKGTTHTV --ATTCATTTTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00044 Mafk_secondary Reverse Complement Reverse Complement Forward 3 10 0.0131738 Species: Mus musculus Consensus sequence (original motif): VHAAAAADTGCAHBR Consensus sequence (reverse complement motif): MBHTGCADTTTTTHV Alignment: MBHTGCADTTTTTHV --ATTCATTTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00105 Pou3f4 Original Motif Original Motif Forward 2 10 0.0157045 Species: Mus musculus Consensus sequence (original motif): DVHTAATTAATTADDDB Consensus sequence (reverse complement motif): BDDDTAATTAATTAHBD Alignment: DVHTAATTAATTADDDB -AAAAATGAAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00168 Hoxd8 Reverse Complement Reverse Complement Backward 3 10 0.0158473 Species: Mus musculus Consensus sequence (original motif): TAADTAATTAATRGHTH Consensus sequence (reverse complement motif): HADCMATTAATTADTTA Alignment: HADCMATTAATTADTTA -----ATTCATTTTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00158 Pou1f1 Original Motif Original Motif Backward 7 10 0.0161731 Species: Mus musculus Consensus sequence (original motif): DVDTAATTAATTADDDB Consensus sequence (reverse complement motif): BDHDTAATTAATTADBH Alignment: DVDTAATTAATTADDDB -AAAAATGAAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Original Motif Original Motif Backward 3 10 0.0163433 Species: Mus musculus Consensus sequence (original motif): HBDDRAACAAAGRABHH Consensus sequence (reverse complement motif): HHBTMCTTTGTTMDDVH Alignment: HBDDRAACAAAGRABHH -----AAAAATGAAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00129 Pou3f1 Original Motif Original Motif Backward 7 10 0.0163434 Species: Mus musculus Consensus sequence (original motif): DVBTAATTAATTAABTH Consensus sequence (reverse complement motif): DAVTTAATTAATTAVBD Alignment: DVBTAATTAATTAABTH -AAAAATGAAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00200 Nkx6-1_2825.1 Original Motif Reverse Complement Forward 4 10 0.0167348 Species: Mus musculus Consensus sequence (original motif): DVHAATTAATTAMYBBG Consensus sequence (reverse complement motif): CBVMRTAATTAATTHBH Alignment: CBVMRTAATTAATTHBH ---AAAAATGAAT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 18 Motif name: Motif 18 Consensus sequence (original motif): TTAGWTWATAA Consensus sequence (reverse complement motif): TTATWAWCTAA ************************************************************************ Best Matches for Motif ID 18 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00262 Lhx1 Original Motif Original Motif Forward 5 11 0.0358953 Species: Mus musculus Consensus sequence (original motif): VVDATTAATTAAWWAHB Consensus sequence (reverse complement motif): BHTWWTTAATTAATDVV Alignment: VVDATTAATTAAWWAHB ----TTAGWTWATAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00129 Pou3f1 Original Motif Reverse Complement Backward 4 11 0.038042 Species: Mus musculus Consensus sequence (original motif): DVBTAATTAATTAABTH Consensus sequence (reverse complement motif): DAVTTAATTAATTAVBD Alignment: DAVTTAATTAATTAVBD ---TTAGWTWATAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00082 Zfp187_primary Original Motif Reverse Complement Backward 1 11 0.0384021 Species: Mus musculus Consensus sequence (original motif): BTATGTACTAATWH Consensus sequence (reverse complement motif): HWATTAGTACATAV Alignment: BTATGTACTAATWH ---TTAGWTWATAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00146 Pou6f1_1731.2 Reverse Complement Reverse Complement Forward 7 11 0.0387939 Species: Mus musculus Consensus sequence (original motif): VHVVWTAATGAGSTDDH Consensus sequence (reverse complement motif): DHDASCTCATTAWVVHV Alignment: DHDASCTCATTAWVVHV ------TTATWAWCTAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00169 Lmx1b Reverse Complement Original Motif Backward 5 11 0.0395035 Species: Mus musculus Consensus sequence (original motif): VDWWWTTAATTAATDHB Consensus sequence (reverse complement motif): BHDATTAATTAAWWWHB Alignment: VDWWWTTAATTAATDHB --TTATWAWCTAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00196 Hoxa4 Reverse Complement Original Motif Forward 3 11 0.0396152 Species: Mus musculus Consensus sequence (original motif): DDTHATTAATTAACKBG Consensus sequence (reverse complement motif): CVRGTTAATTAATHADH Alignment: DDTHATTAATTAACKBG --TTATWAWCTAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00142 Uncx4.1 Reverse Complement Original Motif Forward 3 11 0.03971 Species: Mus musculus Consensus sequence (original motif): VDHDATTAATTAABVVG Consensus sequence (reverse complement motif): CVVBTTAATTAATDHDV Alignment: VDHDATTAATTAABVVG --TTATWAWCTAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00264 Hoxa1 Reverse Complement Reverse Complement Forward 5 11 0.0401139 Species: Mus musculus Consensus sequence (original motif): HTDAGCTAATTAMHBY Consensus sequence (reverse complement motif): MBDRTAATTAGCTHAD Alignment: MBDRTAATTAGCTHAD ----TTATWAWCTAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00023 Sox30_secondary Reverse Complement Reverse Complement Backward 1 11 0.0405076 Species: Mus musculus Consensus sequence (original motif): THDBATTATAATMVVV Consensus sequence (reverse complement motif): VVVYATTATAATBDHA Alignment: VVVYATTATAATBDHA -----TTATWAWCTAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00130 Lhx3 Original Motif Original Motif Backward 3 11 0.0405397 Species: Mus musculus Consensus sequence (original motif): VDAATTAATTAAWWHHB Consensus sequence (reverse complement motif): VHHWWTTAATTAATTDV Alignment: VDAATTAATTAAWWHHB ----TTAGWTWATAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 19 Motif name: Motif 19 Consensus sequence (original motif): TTCWTAGATTAWA Consensus sequence (reverse complement motif): TWTAATCTAWGAA ************************************************************************ Best Matches for Motif ID 19 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00208 Obox5_2284.1 Reverse Complement Reverse Complement Backward 1 13 0.0233931 Species: Mus musculus Consensus sequence (original motif): HDVRGGGATTAAHTHHH Consensus sequence (reverse complement motif): DHHAHTTAATCCCKVDH Alignment: DHHAHTTAATCCCKVDH ----TWTAATCTAWGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Reverse Complement Reverse Complement Backward 3 13 0.0251817 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: HBHDVHDTCTTATCTHTDDHDV -------TWTAATCTAWGAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00208 Obox5_3963.2 Reverse Complement Reverse Complement Backward 1 13 0.026815 Species: Mus musculus Consensus sequence (original motif): VRVAGGGATTAAHTVWV Consensus sequence (reverse complement motif): VWBAHTTAATCCCTVKB Alignment: VWBAHTTAATCCCTVKB ----TWTAATCTAWGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00188 Lmx1a Original Motif Reverse Complement Forward 2 13 0.02879 Species: Mus musculus Consensus sequence (original motif): CVHHTTAATTAAWWWHB Consensus sequence (reverse complement motif): BDWWWTTAATTAAHHVG Alignment: BDWWWTTAATTAAHHVG -TTCWTAGATTAWA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00109 Obox6 Original Motif Original Motif Forward 2 13 0.028848 Species: Mus musculus Consensus sequence (original motif): AHAADCGGATTAWHB Consensus sequence (reverse complement motif): BHWTAATCCGDTTHT Alignment: AHAADCGGATTAWHB -TTCWTAGATTAWA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00262 Lhx1 Original Motif Reverse Complement Backward 4 13 0.0301327 Species: Mus musculus Consensus sequence (original motif): VVDATTAATTAAWWAHB Consensus sequence (reverse complement motif): BHTWWTTAATTAATDVV Alignment: BHTWWTTAATTAATDVV -TTCWTAGATTAWA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00112 Gsc Original Motif Reverse Complement Backward 5 13 0.0301882 Species: Mus musculus Consensus sequence (original motif): HVWHRYTAATCCSYDHV Consensus sequence (reverse complement motif): BHDMSGGATTAMMDWBH Alignment: BHDMSGGATTAMMDWBH TTCWTAGATTAWA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00169 Lmx1b Reverse Complement Reverse Complement Forward 4 13 0.0307426 Species: Mus musculus Consensus sequence (original motif): VDWWWTTAATTAATDHB Consensus sequence (reverse complement motif): BHDATTAATTAAWWWHB Alignment: BHDATTAATTAAWWWHB ---TWTAATCTAWGAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00129 Pou3f1 Reverse Complement Original Motif Forward 2 13 0.0308362 Species: Mus musculus Consensus sequence (original motif): DVBTAATTAATTAABTH Consensus sequence (reverse complement motif): DAVTTAATTAATTAVBD Alignment: DVBTAATTAATTAABTH -TWTAATCTAWGAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00267 Otx2 Reverse Complement Reverse Complement Forward 5 13 0.031113 Species: Mus musculus Consensus sequence (original motif): DDDRGGGATTAATHDDH Consensus sequence (reverse complement motif): DDHHATTAATCCCKDHD Alignment: DDHHATTAATCCCKDHD ----TWTAATCTAWGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 20 Motif name: Motif 20 Consensus sequence (original motif): TTMAAAGATTT Consensus sequence (reverse complement motif): AAATCTTTYAA ************************************************************************ Best Matches for Motif ID 20 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00145 Barhl2 Reverse Complement Original Motif Backward 4 11 0.0251004 Species: Mus musculus Consensus sequence (original motif): HAMAAHCAATTAABHH Consensus sequence (reverse complement motif): HHBTTAATTGDTTYTH Alignment: HAMAAHCAATTAABHH --AAATCTTTYAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00258 Tgif2 Reverse Complement Original Motif Forward 3 11 0.0274736 Species: Mus musculus Consensus sequence (original motif): AABBAGCTGTCAAWVV Consensus sequence (reverse complement motif): VBWTTGACAGCTVBTT Alignment: AABBAGCTGTCAAWVV --AAATCTTTYAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Original Motif Reverse Complement Forward 6 11 0.0280825 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD -----TTMAAAGATTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00203 Pknox1 Reverse Complement Original Motif Backward 4 11 0.0285392 Species: Mus musculus Consensus sequence (original motif): DRVSASCTGTCAAWVV Consensus sequence (reverse complement motif): VVWTTGACAGSTSBKD Alignment: DRVSASCTGTCAAWVV --AAATCTTTYAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00186 Meis1 Reverse Complement Original Motif Forward 3 11 0.0294621 Species: Mus musculus Consensus sequence (original motif): WAVBASCTGTCAAWVH Consensus sequence (reverse complement motif): DBWTTGACAGSTBVTW Alignment: WAVBASCTGTCAAWVH --AAATCTTTYAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00226 Mrg1 Reverse Complement Original Motif Backward 4 11 0.0296127 Species: Mus musculus Consensus sequence (original motif): WAVBASCTGTCAAWHB Consensus sequence (reverse complement motif): BHWTTGACAGSTBBTW Alignment: WAVBASCTGTCAAWHB --AAATCTTTYAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00055 Hbp1_primary Reverse Complement Reverse Complement Backward 4 11 0.030034 Species: Mus musculus Consensus sequence (original motif): HHDWTSAATGAATDDB Consensus sequence (reverse complement motif): VDHATTCATTSAWDDH Alignment: VDHATTCATTSAWDDH --AAATCTTTYAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00148 Hdx Reverse Complement Original Motif Backward 1 11 0.0308277 Species: Mus musculus Consensus sequence (original motif): DDKDHGAAATCAHHBHV Consensus sequence (reverse complement motif): BDBDHTGATTTCDHYDD Alignment: DDKDHGAAATCAHHBHV ------AAATCTTTYAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00059 Arid5a_primary Original Motif Reverse Complement Backward 2 11 0.0312649 Species: Mus musculus Consensus sequence (original motif): VYAATATTGVDADH Consensus sequence (reverse complement motif): HDTDVCAATATTMV Alignment: HDTDVCAATATTMV --TTMAAAGATTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00012 Bbx_primary Original Motif Reverse Complement Forward 4 11 0.0314419 Species: Mus musculus Consensus sequence (original motif): HADTTCAWTGAABWD Consensus sequence (reverse complement motif): HWBTTCAWTGAADTH Alignment: HWBTTCAWTGAADTH ---TTMAAAGATTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 21 Motif name: Motif 21 Consensus sequence (original motif): ATAAAA Consensus sequence (reverse complement motif): TTTTAT ************************************************************************ Best Matches for Motif ID 21 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00180 Hoxd13 Original Motif Original Motif Forward 7 6 0 Species: Mus musculus Consensus sequence (original motif): HDHYYAATAAAAHHHH Consensus sequence (reverse complement motif): HDHHTTTTATTKKHDD Alignment: HDHYYAATAAAAHHHH ------ATAAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00134 Hoxb13 Original Motif Original Motif Backward 5 6 0.00902808 Species: Mus musculus Consensus sequence (original motif): VRHCCAATAAAAWHHV Consensus sequence (reverse complement motif): VDHWTTTTATTGGDKB Alignment: VRHCCAATAAAAWHHV ------ATAAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00207 Hoxb9 Original Motif Original Motif Backward 5 6 0.00908997 Species: Mus musculus Consensus sequence (original motif): VRRGCMATAAAAHHHD Consensus sequence (reverse complement motif): HDHHTTTTATRGCKMV Alignment: VRRGCMATAAAAHHHD ------ATAAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00121 Hoxd10 Original Motif Original Motif Forward 7 6 0.0141617 Species: Mus musculus Consensus sequence (original motif): VDKVYAATAAAATDDDH Consensus sequence (reverse complement motif): HDDDATTTTATTKVRDB Alignment: VDKVYAATAAAATDDDH ------ATAAAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00133 Cdx2 Reverse Complement Reverse Complement Backward 8 6 0.0156625 Species: Mus musculus Consensus sequence (original motif): DVVGGYMATAAAAHKH Consensus sequence (reverse complement motif): HRHTTTTATYMCCVBD Alignment: HRHTTTTATYMCCVBD ---TTTTAT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00213 Hoxa9 Reverse Complement Reverse Complement Backward 7 6 0.0225404 Species: Mus musculus Consensus sequence (original motif): DCGGYCATWAAAWTADW Consensus sequence (reverse complement motif): WDTAWTTTWATGKCCGD Alignment: WDTAWTTTWATGKCCGD -----TTTTAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00217 Hoxa10 Reverse Complement Reverse Complement Backward 7 6 0.0259142 Species: Mus musculus Consensus sequence (original motif): DHBGYAATAAAATDHW Consensus sequence (reverse complement motif): WDDATTTTATTMCBHD Alignment: WDDATTTTATTMCBHD ----TTTTAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00240 Cdx1 Original Motif Original Motif Backward 4 6 0.026022 Species: Mus musculus Consensus sequence (original motif): DDVGGTMATAAAABKH Consensus sequence (reverse complement motif): HRVTTTTATYACCBDD Alignment: DDVGGTMATAAAABKH -------ATAAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00173 Hoxc13 Original Motif Original Motif Backward 4 6 0.033825 Species: Mus musculus Consensus sequence (original motif): HHDBCTCRTAAAAWHD Consensus sequence (reverse complement motif): DHWTTTTAMGAGBDHH Alignment: HHDBCTCRTAAAAWHD -------ATAAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Reverse Complement Original Motif Backward 6 6 0.0353549 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: DDDYCCTTTGATCTDDV ------TTTTAT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 22 Motif name: Zfx Consensus sequence (original motif): BBVGCCBVGGCCTV Consensus sequence (reverse complement motif): VAGGCCBBGGCVBB ************************************************************************ Best Matches for Motif ID 22 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_secondary Original Motif Original Motif Forward 1 14 0.0596136 Species: Mus musculus Consensus sequence (original motif): HHRCCBBWGGDCDB Consensus sequence (reverse complement motif): BDGHCCWBVGGKDH Alignment: HHRCCBBWGGDCDB BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primary Original Motif Original Motif Forward 1 14 0.0603516 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: ABBBBVVRGACCACCCACRDBBM BBVGCCBVGGCCTV--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Reverse Complement Original Motif Forward 4 14 0.0604694 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BDHHMCGCCCCCTHVBB ---VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Original Motif Backward 3 14 0.0606067 Species: Mus musculus Consensus sequence (original motif): HBDRCCMCGCCCHHHD Consensus sequence (reverse complement motif): DHHDGGGCGRGGKHBH Alignment: HBDRCCMCGCCCHHHD BBVGCCBVGGCCTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Reverse Complement Original Motif Forward 9 14 0.0606878 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: HVGVSAGGAGGGTCYHHHHYVH --------VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00087 Tcfap2c_secondary Reverse Complement Reverse Complement Forward 1 14 0.0608063 Species: Mus musculus Consensus sequence (original motif): BHGCCCDAGGGCWD Consensus sequence (reverse complement motif): HWGCCCTDGGGCDB Alignment: HWGCCCTDGGGCDB VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Original Motif Original Motif Forward 5 14 0.0615001 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: DVTTVVCVYGGHGGYCHHDMYB ----BBVGCCBVGGCCTV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00010 Tcfap2b_secondary Original Motif Reverse Complement Forward 2 14 0.0624288 Species: Mus musculus Consensus sequence (original motif): DTWGCCKSMGGCRHH Consensus sequence (reverse complement motif): HHKGCCYSRGGCWAD Alignment: HHKGCCYSRGGCWAD -BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00082 Zfp187_secondary Reverse Complement Original Motif Forward 1 14 0.0627664 Species: Mus musculus Consensus sequence (original motif): DDGMCCTBGTCCHYHV Consensus sequence (reverse complement motif): VHMDGGACVAGGRCDH Alignment: DDGMCCTBGTCCHYHV VAGGCCBBGGCVBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_secondary Reverse Complement Reverse Complement Forward 3 14 0.0636529 Species: Mus musculus Consensus sequence (original motif): VBVBCSGGGTCAVBBH Consensus sequence (reverse complement motif): HVBVTGACCCSGBVBV Alignment: HVBVTGACCCSGBVBV --VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 23 Motif name: Egr1 Consensus sequence (original motif): HGCGTGGGCGK Consensus sequence (reverse complement motif): YCGCCCACGCH ************************************************************************ Best Matches for Motif ID 23 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Reverse Complement Backward 7 11 0 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB ------HGCGTGGGCGK------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Reverse Complement Original Motif Forward 2 11 0.00727533 Species: Mus musculus Consensus sequence (original motif): HCCGCCCCCGCAHB Consensus sequence (reverse complement motif): VHTGCGGGGGCGGH Alignment: HCCGCCCCCGCAHB -YCGCCCACGCH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Reverse Complement Original Motif Backward 4 11 0.0262579 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH ---------YCGCCCACGCH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primary Original Motif Reverse Complement Forward 3 11 0.0297053 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: YBVDMGTGGGTGGTCKVVBVBBT --HGCGTGGGCGK---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Original Motif Original Motif Forward 5 11 0.0318144 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB ----HGCGTGGGCGK-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Original Motif Reverse Complement Forward 3 11 0.0345009 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BVVHAGGGGGCGRDHHB --HGCGTGGGCGK---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primary Original Motif Reverse Complement Forward 4 11 0.0353502 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BTBVTCVTGGGTGGTCMVVDVBB ---HGCGTGGGCGK--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_secondary Reverse Complement Reverse Complement Forward 3 11 0.0360229 Species: Mus musculus Consensus sequence (original motif): BBHBGAGTGGGAHHDB Consensus sequence (reverse complement motif): BHHDTCCCACTCBDBV Alignment: BHHDTCCCACTCBDBV --YCGCCCACGCH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Reverse Complement Original Motif Backward 5 11 0.0362743 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH --------YCGCCCACGCH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00097 Mtf1_primary Reverse Complement Reverse Complement Backward 3 11 0.0386944 Species: Mus musculus Consensus sequence (original motif): DBDHCGTGTGCAAMDH Consensus sequence (reverse complement motif): HDYTTGCACACGDHBH Alignment: HDYTTGCACACGDHBH ---YCGCCCACGCH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 24 Motif name: SP1 Consensus sequence (original motif): CCCCKCCCCC Consensus sequence (reverse complement motif): GGGGGYGGGG ************************************************************************ Best Matches for Motif ID 24 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Original Motif Original Motif Backward 4 10 0.0231018 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: DBCCCCCCCCCCMYC --CCCCKCCCCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Original Motif Backward 3 10 0.0303207 Species: Mus musculus Consensus sequence (original motif): HBDRCCMCGCCCHHHD Consensus sequence (reverse complement motif): DHHDGGGCGRGGKHBH Alignment: HBDRCCMCGCCCHHHD ----CCCCKCCCCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondary Reverse Complement Reverse Complement Forward 5 10 0.0323007 Species: Mus musculus Consensus sequence (original motif): BHHBHCCGCCCCDHHHH Consensus sequence (reverse complement motif): HHHHDGGGGCGGDBHDV Alignment: HHHHDGGGGCGGDBHDV ----GGGGGYGGGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_secondary Reverse Complement Reverse Complement Forward 3 10 0.0340973 Species: Mus musculus Consensus sequence (original motif): BHVDCCCCDCCCBDBH Consensus sequence (reverse complement motif): HVDVGGGHGGGGDBHB Alignment: HVDVGGGHGGGGDBHB --GGGGGYGGGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_secondary Reverse Complement Reverse Complement Forward 5 10 0.0351051 Species: Mus musculus Consensus sequence (original motif): HBBBCCGCCCCWHHHV Consensus sequence (reverse complement motif): BHHHWGGGGCGGBBVH Alignment: BHHHWGGGGCGGBBVH ----GGGGGYGGGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondary Reverse Complement Reverse Complement Forward 7 10 0.0390437 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK ------GGGGGYGGGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Reverse Complement Reverse Complement Backward 7 10 0.0393358 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: HHBSHTCGTGRGTGGKGDBVWMV -------GGGGGYGGGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Original Motif Original Motif Backward 4 10 0.0413863 Species: Mus musculus Consensus sequence (original motif): DHHBCCCCGCCAHHBHB Consensus sequence (reverse complement motif): BHBHDTGGCGGGGBDHD Alignment: DHHBCCCCGCCAHHBHB ----CCCCKCCCCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Original Motif Original Motif Forward 4 10 0.0418947 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: HVBCCCCCCCCMHHHB ---CCCCKCCCCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Original Motif Original Motif Forward 3 10 0.0420708 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BDHHMCGCCCCCTHVBB --CCCCKCCCCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 25 Motif name: TFAP2A Consensus sequence (original motif): GCCBBVRGS Consensus sequence (reverse complement motif): SCMVBBGGC ************************************************************************ Best Matches for Motif ID 25 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00010 Tcfap2b_secondary Original Motif Reverse Complement Forward 4 9 0.0115546 Species: Mus musculus Consensus sequence (original motif): DTWGCCKSMGGCRHH Consensus sequence (reverse complement motif): HHKGCCYSRGGCWAD Alignment: HHKGCCYSRGGCWAD ---GCCBBVRGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00010 Tcfap2b_primary Original Motif Original Motif Forward 3 9 0.0150447 Species: Mus musculus Consensus sequence (original motif): DYGCCYBARGGCAH Consensus sequence (reverse complement motif): HTGCCMTVKGGCMD Alignment: DYGCCYBARGGCAH --GCCBBVRGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_primary Original Motif Original Motif Forward 4 9 0.0151527 Species: Mus musculus Consensus sequence (original motif): WDHSCCYSRGGSRAD Consensus sequence (reverse complement motif): DTMSCCKSMGGSHDW Alignment: WDHSCCYSRGGSRAD ---GCCBBVRGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00087 Tcfap2c_primary Original Motif Original Motif Backward 4 9 0.016909 Species: Mus musculus Consensus sequence (original motif): WHHSCCYSRGGSDAD Consensus sequence (reverse complement motif): DTHSCCKSMGGSHHW Alignment: WHHSCCYSRGGSDAD ---GCCBBVRGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00087 Tcfap2c_secondary Original Motif Original Motif Forward 3 9 0.0170259 Species: Mus musculus Consensus sequence (original motif): BHGCCCDAGGGCWD Consensus sequence (reverse complement motif): HWGCCCTDGGGCDB Alignment: BHGCCCDAGGGCWD --GCCBBVRGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00028 Tcfap2e_primary Original Motif Original Motif Backward 4 9 0.0198854 Species: Mus musculus Consensus sequence (original motif): HHHGCCTSAGGCDAD Consensus sequence (reverse complement motif): DTHGCCTSAGGCHHH Alignment: HHHGCCTSAGGCDAD ---GCCBBVRGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Reverse Complement Reverse Complement Backward 9 9 0.0203681 Species: Mus musculus Consensus sequence (original motif): DHHBCCCCGCCAHHBHB Consensus sequence (reverse complement motif): BHBHDTGGCGGGGBDHD Alignment: BHBHDTGGCGGGGBDHD SCMVBBGGC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_secondary Reverse Complement Reverse Complement Forward 1 9 0.0217064 Species: Mus musculus Consensus sequence (original motif): HBHWYGGCGCCAMDVBB Consensus sequence (reverse complement motif): BBBDYTGGCGCCKWDBD Alignment: BBBDYTGGCGCCKWDBD SCMVBBGGC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_secondary Original Motif Original Motif Forward 3 9 0.0234775 Species: Mus musculus Consensus sequence (original motif): HHRCCBBWGGDCDB Consensus sequence (reverse complement motif): BDGHCCWBVGGKDH Alignment: HHRCCBBWGGDCDB --GCCBBVRGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_secondary Original Motif Original Motif Backward 1 9 0.026642 Species: Mus musculus Consensus sequence (original motif): VVDBATACGCCCHAHHD Consensus sequence (reverse complement motif): DHDTHGGGCGTATBHBB Alignment: VVDBATACGCCCHAHHD --------GCCBBVRGS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 26 Motif name: MIZF Consensus sequence (original motif): BAACGTCCGC Consensus sequence (reverse complement motif): GCGGACGTTV ************************************************************************ Best Matches for Motif ID 26 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00419 Spic Original Motif Reverse Complement Forward 1 10 0 Species: Mus musculus Consensus sequence (original motif): VAAAGMGGAAGTWD Consensus sequence (reverse complement motif): DWACTTCCRCTTTB Alignment: DWACTTCCRCTTTB BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00409 Elf5 Original Motif Reverse Complement Forward 1 10 0.00379999 Species: Mus musculus Consensus sequence (original motif): BWAHSMGGAAGTWD Consensus sequence (reverse complement motif): DWACTTCCRSDTWV Alignment: BWAHSMGGAAGTWD BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00413 Elf4 Original Motif Original Motif Backward 5 10 0.0124101 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGKWTH Consensus sequence (reverse complement motif): HAWYCCGGAAGTHBBD Alignment: DBBHACTTCCGGKWTH --BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00404 Elf2 Original Motif Original Motif Forward 3 10 0.0128348 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGDWDB Consensus sequence (reverse complement motif): BDWDCCGGAAGTHBBD Alignment: DBBHACTTCCGGDWDB --BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00085 Sfpi1_primary Original Motif Reverse Complement Forward 1 10 0.0141516 Species: Mus musculus Consensus sequence (original motif): BDAWGVGGAAGTDH Consensus sequence (reverse complement motif): HDACTTCCBCWTDV Alignment: BDAWGVGGAAGTDH BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00423 Gm5454 Reverse Complement Reverse Complement Backward 3 10 0.0144665 Species: Mus musculus Consensus sequence (original motif): VDHHACTTCCGGTHVH Consensus sequence (reverse complement motif): DVHACCGGAAGTHDDV Alignment: DVHACCGGAAGTHDDV ----GCGGACGTTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00412 Etv5 Reverse Complement Reverse Complement Backward 3 10 0.0155825 Species: Mus musculus Consensus sequence (original motif): VDHAACWTCCGGTHHH Consensus sequence (reverse complement motif): DHHACCGGAWGTTDDV Alignment: DHHACCGGAWGTTDDV ----GCGGACGTTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00015 Ehf_primary Reverse Complement Original Motif Forward 6 10 0.0162018 Species: Mus musculus Consensus sequence (original motif): VBDABCCGGAAGTDD Consensus sequence (reverse complement motif): DDACTTCCGGBTHBB Alignment: VBDABCCGGAAGTDD -----GCGGACGTTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00418 Etv6 Original Motif Original Motif Forward 4 10 0.0171234 Species: Mus musculus Consensus sequence (original motif): DVHBTACTTCCGGHTHB Consensus sequence (reverse complement motif): BHAHCCGGAAGTABDVD Alignment: DVHBTACTTCCGGHTHB ---BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00421 Etv1 Reverse Complement Original Motif Backward 3 10 0.0184147 Species: Mus musculus Consensus sequence (original motif): MVHBACCGGAAGTVDVH Consensus sequence (reverse complement motif): HBDBACTTCCGGTBHVY Alignment: MVHBACCGGAAGTVDVH -----GCGGACGTTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 27 Motif name: Klf4 Consensus sequence (original motif): DGGGYGKGGC Consensus sequence (reverse complement motif): GCCYCMCCCD ************************************************************************ Best Matches for Motif ID 27 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Reverse Complement Forward 4 10 0 Species: Mus musculus Consensus sequence (original motif): HBDRCCMCGCCCHHHD Consensus sequence (reverse complement motif): DHHDGGGCGRGGKHBH Alignment: DHHDGGGCGRGGKHBH ---DGGGYGKGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Reverse Complement Original Motif Forward 4 10 0.0153308 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: DBCCCCCCCCCCMYC ---GCCYCMCCCD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_secondary Original Motif Original Motif Forward 3 10 0.0186791 Species: Mus musculus Consensus sequence (original motif): BDWAGGCGTGBCHHD Consensus sequence (reverse complement motif): HHDGBCACGCCTWDB Alignment: BDWAGGCGTGBCHHD --DGGGYGKGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Reverse Complement Original Motif Forward 3 10 0.0218399 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: HVBCCCCCCCCMHHHB --GCCYCMCCCD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Reverse Complement Original Motif Forward 1 10 0.0249586 Species: Mus musculus Consensus sequence (original motif): HCCGCCCCCGCAHB Consensus sequence (reverse complement motif): VHTGCGGGGGCGGH Alignment: HCCGCCCCCGCAHB GCCYCMCCCD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Original Motif Reverse Complement Forward 7 10 0.0299159 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BVVHAGGGGGCGRDHHB ------DGGGYGKGGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Original Motif Reverse Complement Forward 5 10 0.0308595 Species: Mus musculus Consensus sequence (original motif): DHHBCCCCGCCAHHBHB Consensus sequence (reverse complement motif): BHBHDTGGCGGGGBDHD Alignment: BHBHDTGGCGGGGBDHD ----DGGGYGKGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00047 Zbtb7b_primary Reverse Complement Original Motif Forward 1 10 0.0345891 Species: Mus musculus Consensus sequence (original motif): DDVCCCCCCHAAWHB Consensus sequence (reverse complement motif): VHWTTHGGGGGGVDD Alignment: VHWTTHGGGGGGVDD GCCYCMCCCD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_secondary Reverse Complement Original Motif Forward 3 10 0.0346735 Species: Mus musculus Consensus sequence (original motif): HBBBCCGCCCCWHHHV Consensus sequence (reverse complement motif): BHHHWGGGGCGGBBVH Alignment: HBBBCCGCCCCWHHHV --GCCYCMCCCD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Reverse Complement Original Motif Backward 8 10 0.0351496 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH ------GCCYCMCCCD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 28 Motif name: E2F1 Consensus sequence (original motif): TTTSGCGC Consensus sequence (reverse complement motif): GCGCSAAA ************************************************************************ Best Matches for Motif ID 28 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00001 E2F2_secondary Original Motif Reverse Complement Backward 7 8 0 Species: Mus musculus Consensus sequence (original motif): HVBWYGGCGCCAADVBB Consensus sequence (reverse complement motif): BBBDTTGGCGCCKWVVD Alignment: BBBDTTGGCGCCKWVVD ---TTTSGCGC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_secondary Reverse Complement Original Motif Backward 4 8 0.00182028 Species: Mus musculus Consensus sequence (original motif): HBHWYGGCGCCAMDVBB Consensus sequence (reverse complement motif): BBBDYTGGCGCCKWDBD Alignment: HBHWYGGCGCCAMDVBB ------GCGCSAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00072 IRC900814_primary Reverse Complement Original Motif Forward 5 8 0.0237639 Species: Mus musculus Consensus sequence (original motif): DDHTACGACAAAWDDB Consensus sequence (reverse complement motif): BHDWTTTGTCGTAHDD Alignment: DDHTACGACAAAWDDB ----GCGCSAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_primary Reverse Complement Reverse Complement Backward 3 8 0.0275636 Species: Mus musculus Consensus sequence (original motif): VHDADGGCGCGCSHW Consensus sequence (reverse complement motif): WHSGCGCGCCHTDHB Alignment: WHSGCGCGCCHTDHB -----GCGCSAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_primary Reverse Complement Reverse Complement Forward 9 8 0.028109 Species: Mus musculus Consensus sequence (original motif): DDGCGCGCGCRCHYRD Consensus sequence (reverse complement motif): DMMDGMGCGCGCGCHD Alignment: DMMDGMGCGCGCGCHD --------GCGCSAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00001 E2F2_primary Original Motif Original Motif Backward 6 8 0.0296302 Species: Mus musculus Consensus sequence (original motif): VHDARGGCGCGCVHH Consensus sequence (reverse complement motif): HHVGCGCGCCKTDHB Alignment: VHDARGGCGCGCVHH --TTTSGCGC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00068 Eomes_primary Reverse Complement Original Motif Forward 7 8 0.0348969 Species: Mus musculus Consensus sequence (original motif): BVHDAGGTGTGAAAHHH Consensus sequence (reverse complement motif): HHHTTTCACACCTDHBV Alignment: BVHDAGGTGTGAAAHHH ------GCGCSAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00011 Irf6_primary Original Motif Reverse Complement Forward 8 8 0.0368278 Species: Mus musculus Consensus sequence (original motif): HDDAHCGAAACYAVDDD Consensus sequence (reverse complement motif): DHDBTKGTTTCGHTHDD Alignment: DHDBTKGTTTCGHTHDD -------TTTSGCGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00049 Sp100_primary Reverse Complement Reverse Complement Forward 6 8 0.0383813 Species: Mus musculus Consensus sequence (original motif): DWTWHHCGGAAAWD Consensus sequence (reverse complement motif): DWTTTCCGHHWAWD Alignment: DWTTTCCGHHWAWD -----GCGCSAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_primary Reverse Complement Reverse Complement Forward 9 8 0.0406002 Species: Mus musculus Consensus sequence (original motif): DBBVDDDRTRGCGTCBBYTHGA Consensus sequence (reverse complement motif): TCDAMVBGACGCMAKDDDVBBD Alignment: TCDAMVBGACGCMAKDDDVBBD --------GCGCSAAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 29 Motif name: HIF1AARNT Consensus sequence (original motif): VBACGTGV Consensus sequence (reverse complement motif): VCACGTBV ************************************************************************ Best Matches for Motif ID 29 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00097 Mtf1_primary Reverse Complement Reverse Complement Backward 2 8 0 Species: Mus musculus Consensus sequence (original motif): DBDHCGTGTGCAAMDH Consensus sequence (reverse complement motif): HDYTTGCACACGDHBH Alignment: HDYTTGCACACGDHBH -------VCACGTBV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_primary Reverse Complement Reverse Complement Backward 4 8 0.000574345 Species: Mus musculus Consensus sequence (original motif): DDASCACGTGBTBVDD Consensus sequence (reverse complement motif): HHVBABCACGTGSTHD Alignment: HHVBABCACGTGSTHD -----VCACGTBV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Original Motif Original Motif Backward 9 8 0.00642455 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: YDYBDHTMCACGTGGADDBMDGT -------VBACGTGV-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00084 Gmeb1_primary Original Motif Reverse Complement Backward 5 8 0.0131171 Species: Mus musculus Consensus sequence (original motif): BHBBKKACGTMMVDBVB Consensus sequence (reverse complement motif): BVVDVRYACGTRYVBHB Alignment: BVVDVRYACGTRYVBHB -----VBACGTGV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Reverse Complement Original Motif Backward 8 8 0.014006 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: RDHDBVDTCACGTGASBHVHDH -------VCACGTBV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Original Motif Original Motif Forward 5 8 0.0184296 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: VBHHVCAGGTGCDVDHD ----VBACGTGV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00068 Eomes_secondary Reverse Complement Reverse Complement Backward 3 8 0.0188154 Species: Mus musculus Consensus sequence (original motif): VBVDAGGTGTYGVBBV Consensus sequence (reverse complement motif): VVBVCKACACCTHVBV Alignment: VVBVCKACACCTHVBV ------VCACGTBV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00026 Zscan4_primary Original Motif Original Motif Backward 9 8 0.0189568 Species: Mus musculus Consensus sequence (original motif): DHVDTGTGCACAYAHDH Consensus sequence (reverse complement motif): HDHTMTGTGCACADVHD Alignment: DHVDTGTGCACAYAHDH -VBACGTGV-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_primary Original Motif Reverse Complement Backward 8 8 0.0198987 Species: Mus musculus Consensus sequence (original motif): HHDATGTGCACATAMDH Consensus sequence (reverse complement motif): HHRTATGTGCACATHHD Alignment: HHRTATGTGCACATHHD --VBACGTGV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Reverse Complement Original Motif Backward 4 8 0.021967 Species: Mus musculus Consensus sequence (original motif): BBGHCACGCGACDD Consensus sequence (reverse complement motif): HDGTCGCGTGDCVB Alignment: BBGHCACGCGACDD ---VCACGTBV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 30 Motif name: PLAG1 Consensus sequence (original motif): GGGGCCCAAGGGGG Consensus sequence (reverse complement motif): CCCCCTTGGGCCCC ************************************************************************ Best Matches for Motif ID 30 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00102 Zic1_primary Reverse Complement Reverse Complement Forward 1 14 0.0499525 Species: Mus musculus Consensus sequence (original motif): BHCCCCCGGGGGGG Consensus sequence (reverse complement motif): CCCCCCCGGGGGHB Alignment: CCCCCCCGGGGGHB CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primary Reverse Complement Original Motif Backward 1 14 0.0540613 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BTBVTCVTGGGTGGTCMVVDVBB ---------CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_primary Reverse Complement Original Motif Backward 1 14 0.0548411 Species: Mus musculus Consensus sequence (original motif): BMCCCCCGGGGGGGB Consensus sequence (reverse complement motif): VCCCCCCCGGGGGRB Alignment: VCCCCCCCGGGGGRB -CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_secondary Original Motif Reverse Complement Backward 1 14 0.0556785 Species: Mus musculus Consensus sequence (original motif): HHRCCBBWGGDCDB Consensus sequence (reverse complement motif): BDGHCCWBVGGKDH Alignment: HHRCCBBWGGDCDB GGGGCCCAAGGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00006 Zic3_primary Reverse Complement Original Motif Forward 2 14 0.056976 Species: Mus musculus Consensus sequence (original motif): BMCCCCCGGGGGGGB Consensus sequence (reverse complement motif): VCCCCCCCGGGGGRB Alignment: BMCCCCCGGGGGGGB -CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primary Reverse Complement Original Motif Backward 9 14 0.0573495 Species: Mus musculus Consensus sequence (original motif): HDGHHBHRGACCACCCGSVDVG Consensus sequence (reverse complement motif): CVHBSCGGGTGGTCMHVHHCDH Alignment: HDGHHBHRGACCACCCGSVDVG CCCCCTTGGGCCCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Reverse Complement Reverse Complement Forward 9 14 0.0579022 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: VMYDHDGMCCHCCKBGVVAAVH --------CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Reverse Complement Reverse Complement Backward 9 14 0.0580662 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: DVMHHDHKGACCCTCCTSVCBH CCCCCTTGGGCCCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Reverse Complement Reverse Complement Backward 1 14 0.0597453 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB ---------CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Reverse Complement Original Motif Backward 1 14 0.0598088 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: DBCCCCCCCCCCMYC -CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 31 Motif name: Pax5 Consensus sequence (original motif): DGVBCABTGDWGCGKRRCSR Consensus sequence (reverse complement motif): MSGKKRCGCWDCABTGBBCD ************************************************************************ Best Matches for Motif ID 31 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondary Original Motif Original Motif Backward 2 20 0.0499537 Species: Mus musculus Consensus sequence (original motif): DDRMHBACGCGYGCGTDGBBDB Consensus sequence (reverse complement motif): BDVBCDACGCKCGCGTBHRKHD Alignment: DDRMHBACGCGYGCGTDGBBDB -DGVBCABTGDWGCGKRRCSR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Original Motif Reverse Complement Forward 1 20 0.0520196 Species: Mus musculus Consensus sequence (original motif): WHVBVVMACGCGCGTCDYHWDH Consensus sequence (reverse complement motif): HDWHMHGACGCGCGTRBVVBHW Alignment: HDWHMHGACGCGCGTRBVVBHW DGVBCABTGDWGCGKRRCSR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondary Original Motif Reverse Complement Backward 2 20 0.0542764 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK -DGVBCABTGDWGCGKRRCSR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Reverse Complement Reverse Complement Forward 3 20 0.0560636 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: DCATDBTGHGCATKMTTBRSWR --MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Original Motif Reverse Complement Forward 1 20 0.0595671 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: HHBSHTCGTGRGTGGKGDBVWMV DGVBCABTGDWGCGKRRCSR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_primary Original Motif Original Motif Backward 4 20 0.0602559 Species: Mus musculus Consensus sequence (original motif): HADTBVADGATGCATCMTGMVHB Consensus sequence (reverse complement motif): VHVRCAYGATGCATCDTVVADTH Alignment: HADTBVADGATGCATCMTGMVHB DGVBCABTGDWGCGKRRCSR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Original Motif Original Motif Backward 4 20 0.0607506 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB DGVBCABTGDWGCGKRRCSR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondary Reverse Complement Reverse Complement Backward 4 20 0.0611227 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: BDBBVBVGTAWCCAAGVBHBAGB MSGKKRCGCWDCABTGBBCD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Reverse Complement Original Motif Forward 3 20 0.0611361 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: RDHDBVDTCACGTGASBHVHDH --MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Original Motif Original Motif Forward 1 20 0.061403 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: GTVBDAATTGTVTGHGDDHKVB DGVBCABTGDWGCGKRRCSR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 32 Motif name: ArntAhr Consensus sequence (original motif): YGCGTG Consensus sequence (reverse complement motif): CACGCM ************************************************************************ Best Matches for Motif ID 32 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Reverse Complement Forward 7 6 0 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB ------YGCGTG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_secondary Reverse Complement Reverse Complement Forward 6 6 0.00183587 Species: Mus musculus Consensus sequence (original motif): BDWAGGCGTGBCHHD Consensus sequence (reverse complement motif): HHDGBCACGCCTWDB Alignment: HHDGBCACGCCTWDB -----CACGCM---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Original Motif Reverse Complement Backward 5 6 0.00348048 Species: Mus musculus Consensus sequence (original motif): BBGHCACGCGACDD Consensus sequence (reverse complement motif): HDGTCGCGTGDCVB Alignment: HDGTCGCGTGDCVB ----YGCGTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_primary Reverse Complement Reverse Complement Forward 8 6 0.00526158 Species: Mus musculus Consensus sequence (original motif): DBBVDDDRTRGCGTCBBYTHGA Consensus sequence (reverse complement motif): TCDAMVBGACGCMAKDDDVBBD Alignment: TCDAMVBGACGCMAKDDDVBBD -------CACGCM--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_second Original Motif Reverse Complement Backward 8 6 0.00558171 Species: Mus musculus Consensus sequence (original motif): DVMVGCACACACKCVH Consensus sequence (reverse complement motif): HBGYGTGTGTGCVRVD Alignment: HBGYGTGTGTGCVRVD ---YGCGTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00097 Mtf1_primary Reverse Complement Reverse Complement Forward 9 6 0.00702416 Species: Mus musculus Consensus sequence (original motif): DBDHCGTGTGCAAMDH Consensus sequence (reverse complement motif): HDYTTGCACACGDHBH Alignment: HDYTTGCACACGDHBH --------CACGCM-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondary Original Motif Original Motif Forward 8 6 0.0123233 Species: Mus musculus Consensus sequence (original motif): DDRMHBACGCGYGCGTDGBBDB Consensus sequence (reverse complement motif): BDVBCDACGCKCGCGTBHRKHD Alignment: DDRMHBACGCGYGCGTDGBBDB -------YGCGTG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Reverse Complement Original Motif Backward 3 6 0.0141579 Species: Mus musculus Consensus sequence (original motif): HCCGCCCCCGCAHB Consensus sequence (reverse complement motif): VHTGCGGGGGCGGH Alignment: HCCGCCCCCGCAHB ------CACGCM-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Original Motif Original Motif Backward 11 6 0.0144485 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH -------YGCGTG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Original Motif Reverse Complement Backward 8 6 0.0172109 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VHYTCCDWCCGCGTCMMTHWHV ---------YGCGTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 33 Motif name: Mycn Consensus sequence (original motif): HSCACGTGGC Consensus sequence (reverse complement motif): GCCACGTGSD ************************************************************************ Best Matches for Motif ID 33 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_primary Original Motif Original Motif Forward 3 10 0 Species: Mus musculus Consensus sequence (original motif): DDASCACGTGBTBVDD Consensus sequence (reverse complement motif): HHVBABCACGTGSTHD Alignment: DDASCACGTGBTBVDD --HSCACGTGGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Reverse Complement Reverse Complement Backward 7 10 0.00783793 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM -------GCCACGTGSD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Reverse Complement Reverse Complement Backward 7 10 0.0132858 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM ------GCCACGTGSD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Reverse Complement Original Motif Backward 5 10 0.0227933 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: VBHHVCAGGTGCDVDHD ---GCCACGTGSD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Original Motif Original Motif Forward 3 10 0.0257011 Species: Mus musculus Consensus sequence (original motif): BBGHCACGCGACDD Consensus sequence (reverse complement motif): HDGTCGCGTGDCVB Alignment: BBGHCACGCGACDD --HSCACGTGGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00165 Titf1 Reverse Complement Original Motif Backward 4 10 0.0344833 Species: Mus musculus Consensus sequence (original motif): BVABCCACTTGAMHTT Consensus sequence (reverse complement motif): AAHYTCAAGTGGBTBV Alignment: BVABCCACTTGAMHTT ---GCCACGTGSD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00231 Nkx2-2 Reverse Complement Original Motif Backward 5 10 0.035228 Species: Mus musculus Consensus sequence (original motif): HDVRCCACTTGARADBD Consensus sequence (reverse complement motif): DVDTKTCAAGTGGKBDH Alignment: HDVRCCACTTGARADBD ---GCCACGTGSD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00084 Gmeb1_primary Reverse Complement Reverse Complement Backward 4 10 0.0358581 Species: Mus musculus Consensus sequence (original motif): BHBBKKACGTMMVDBVB Consensus sequence (reverse complement motif): BVVDVRYACGTRYVBHB Alignment: BVVDVRYACGTRYVBHB ----GCCACGTGSD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00084 Gmeb1_secondary Original Motif Reverse Complement Backward 4 10 0.03725 Species: Mus musculus Consensus sequence (original motif): DGVBCRACGTYGTYHH Consensus sequence (reverse complement motif): HHMACKACGTMGBVCD Alignment: HHMACKACGTMGBVCD ---HSCACGTGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Original Motif Original Motif Forward 7 10 0.0383187 Species: Mus musculus Consensus sequence (original motif): WHVBVVMACGCGCGTCDYHWDH Consensus sequence (reverse complement motif): HDWHMHGACGCGCGTRBVVBHW Alignment: WHVBVVMACGCGCGTCDYHWDH ------HSCACGTGGC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 34 Motif name: Myc Consensus sequence (original motif): VGCACGTGGH Consensus sequence (reverse complement motif): DCCACGTGCV ************************************************************************ Best Matches for Motif ID 34 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_primary Original Motif Original Motif Forward 3 10 0 Species: Mus musculus Consensus sequence (original motif): DDASCACGTGBTBVDD Consensus sequence (reverse complement motif): HHVBABCACGTGSTHD Alignment: DDASCACGTGBTBVDD --VGCACGTGGH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Reverse Complement Reverse Complement Forward 8 10 0.00631885 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM -------DCCACGTGCV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Reverse Complement Reverse Complement Backward 7 10 0.00821668 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM ------DCCACGTGCV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Original Motif Reverse Complement Backward 4 10 0.0140005 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: DHDBHGCACCTGBDDVB ----VGCACGTGGH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Original Motif Original Motif Backward 3 10 0.0308912 Species: Mus musculus Consensus sequence (original motif): BBGHCACGCGACDD Consensus sequence (reverse complement motif): HDGTCGCGTGDCVB Alignment: BBGHCACGCGACDD --VGCACGTGGH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00165 Titf1 Reverse Complement Original Motif Forward 4 10 0.0311723 Species: Mus musculus Consensus sequence (original motif): BVABCCACTTGAMHTT Consensus sequence (reverse complement motif): AAHYTCAAGTGGBTBV Alignment: BVABCCACTTGAMHTT ---DCCACGTGCV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00249 Nkx2-5 Reverse Complement Original Motif Backward 4 10 0.031308 Species: Mus musculus Consensus sequence (original motif): HDADCCACTTRAAWTT Consensus sequence (reverse complement motif): AAWTTMAAGTGGHTDH Alignment: HDADCCACTTRAAWTT ---DCCACGTGCV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00231 Nkx2-2 Reverse Complement Original Motif Forward 4 10 0.0334845 Species: Mus musculus Consensus sequence (original motif): HDVRCCACTTGARADBD Consensus sequence (reverse complement motif): DVDTKTCAAGTGGKBDH Alignment: HDVRCCACTTGARADBD ---DCCACGTGCV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00147 Nkx2-6 Reverse Complement Original Motif Backward 4 10 0.0345548 Species: Mus musculus Consensus sequence (original motif): DDADCCACTTAAVHTT Consensus sequence (reverse complement motif): AAHVTTAAGTGGHTDD Alignment: DDADCCACTTAAVHTT ---DCCACGTGCV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Original Motif Original Motif Forward 6 10 0.0363818 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VDWDARRGACGCGGWHGGAKHV -----VGCACGTGGH------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 35 Motif name: GABPA Consensus sequence (original motif): CCGGAAGTGVV Consensus sequence (reverse complement motif): VVCACTTCCGG ************************************************************************ Best Matches for Motif ID 35 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00013 Gabpa_primary Reverse Complement Reverse Complement Backward 6 11 0 Species: Mus musculus Consensus sequence (original motif): HVHHACCGGAAGTDHHV Consensus sequence (reverse complement motif): BHHHACTTCCGGTHHBD Alignment: BHHHACTTCCGGTHHBD -VVCACTTCCGG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00410 Elk1 Original Motif Original Motif Forward 6 11 0.000136484 Species: Mus musculus Consensus sequence (original motif): VVHBACCGGAAGTDBHD Consensus sequence (reverse complement motif): DHBDACTTCCGGTVHVB Alignment: VVHBACCGGAAGTDBHD -----CCGGAAGTGVV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00420 Elk3 Original Motif Original Motif Forward 6 11 0.000219706 Species: Mus musculus Consensus sequence (original motif): DVBBACCGGAAGYDVVV Consensus sequence (reverse complement motif): VBVDMCTTCCGGTVBVD Alignment: DVBBACCGGAAGYDVVV -----CCGGAAGTGVV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00421 Etv1 Original Motif Original Motif Backward 2 11 0.000932023 Species: Mus musculus Consensus sequence (original motif): MVHBACCGGAAGTVDVH Consensus sequence (reverse complement motif): HBDBACTTCCGGTBHVY Alignment: MVHBACCGGAAGTVDVH -----CCGGAAGTGVV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00404 Elf2 Reverse Complement Original Motif Forward 2 11 0.00527483 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGDWDB Consensus sequence (reverse complement motif): BDWDCCGGAAGTHBBD Alignment: DBBHACTTCCGGDWDB -VVCACTTCCGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00414 Ets1 Original Motif Original Motif Forward 7 11 0.00805613 Species: Mus musculus Consensus sequence (original motif): BDDDHACCGGAARTVDD Consensus sequence (reverse complement motif): DDBAMTTCCGGTDHDHB Alignment: BDDDHACCGGAARTVDD ------CCGGAAGTGVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00423 Gm5454 Reverse Complement Original Motif Forward 2 11 0.00933976 Species: Mus musculus Consensus sequence (original motif): VDHHACTTCCGGTHVH Consensus sequence (reverse complement motif): DVHACCGGAAGTHDDV Alignment: VDHHACTTCCGGTHVH -VVCACTTCCGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00413 Elf4 Reverse Complement Original Motif Backward 5 11 0.00992792 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGKWTH Consensus sequence (reverse complement motif): HAWYCCGGAAGTHBBD Alignment: DBBHACTTCCGGKWTH -VVCACTTCCGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00418 Etv6 Reverse Complement Original Motif Backward 5 11 0.0114183 Species: Mus musculus Consensus sequence (original motif): DVHBTACTTCCGGHTHB Consensus sequence (reverse complement motif): BHAHCCGGAAGTABDVD Alignment: DVHBTACTTCCGGHTHB --VVCACTTCCGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00411 Erg Original Motif Reverse Complement Backward 2 11 0.0122484 Species: Mus musculus Consensus sequence (original motif): VBBVAYTTCCGGTDDB Consensus sequence (reverse complement motif): BDDACCGGAAKTVBVB Alignment: BDDACCGGAAKTVBVB ----CCGGAAGTGVV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 36 Motif name: csGCCCCGCCCCsc Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD ************************************************************************ Best Matches for Motif ID 36 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Original Motif Forward 2 14 0 Species: Mus musculus Consensus sequence (original motif): HBDRCCMCGCCCHHHD Consensus sequence (reverse complement motif): DHHDGGGCGRGGKHBH Alignment: HBDRCCMCGCCCHHHD -HVGCCCCGCCCCBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Original Motif Original Motif Backward 3 14 0.0106621 Species: Mus musculus Consensus sequence (original motif): DHHBCCCCGCCAHHBHB Consensus sequence (reverse complement motif): BHBHDTGGCGGGGBDHD Alignment: DHHBCCCCGCCAHHBHB -HVGCCCCGCCCCBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Reverse Complement Reverse Complement Forward 1 14 0.017761 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: GKRGGGGGGGGGGBD BBGGGGCGGGGCVD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Original Motif Original Motif Forward 1 14 0.0181905 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: HVBCCCCCCCCMHHHB HVGCCCCGCCCCBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondary Original Motif Original Motif Forward 1 14 0.0225788 Species: Mus musculus Consensus sequence (original motif): BHHBHCCGCCCCDHHHH Consensus sequence (reverse complement motif): HHHHDGGGGCGGDBHDV Alignment: BHHBHCCGCCCCDHHHH HVGCCCCGCCCCBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_secondary Reverse Complement Original Motif Backward 2 14 0.0277585 Species: Mus musculus Consensus sequence (original motif): BDWAGGCGTGBCHHD Consensus sequence (reverse complement motif): HHDGBCACGCCTWDB Alignment: BDWAGGCGTGBCHHD BBGGGGCGGGGCVD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_secondary Original Motif Reverse Complement Backward 2 14 0.0318885 Species: Mus musculus Consensus sequence (original motif): BBHBGAGTGGGAHHDB Consensus sequence (reverse complement motif): BHHDTCCCACTCBDBV Alignment: BHHDTCCCACTCBDBV -HVGCCCCGCCCCBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00024 Glis2_primary Reverse Complement Reverse Complement Forward 1 14 0.0330753 Species: Mus musculus Consensus sequence (original motif): HHHVGACCCCCCVBRD Consensus sequence (reverse complement motif): HKBBGGGGGGTCVHHH Alignment: HKBBGGGGGGTCVHHH BBGGGGCGGGGCVD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primary Reverse Complement Reverse Complement Backward 6 14 0.0334003 Species: Mus musculus Consensus sequence (original motif): HDGHHBHRGACCACCCGSVDVG Consensus sequence (reverse complement motif): CVHBSCGGGTGGTCMHVHHCDH Alignment: CVHBSCGGGTGGTCMHVHHCDH ---BBGGGGCGGGGCVD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primary Reverse Complement Reverse Complement Forward 4 14 0.0351614 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: CBDMCMGGGTGGTCCHVBVBAH ---BBGGGGCGGGGCVD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 37 Motif name: tkAAATAATAtw Consensus sequence (original motif): HDAAATAATAHW Consensus sequence (reverse complement motif): WHTATTATTTDH ************************************************************************ Best Matches for Motif ID 37 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00121 Hoxd10 Reverse Complement Reverse Complement Backward 3 12 0.00353196 Species: Mus musculus Consensus sequence (original motif): VDKVYAATAAAATDDDH Consensus sequence (reverse complement motif): HDDDATTTTATTKVRDB Alignment: HDDDATTTTATTKVRDB ---WHTATTATTTDH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00244 Tlx2 Reverse Complement Reverse Complement Forward 3 12 0.00646023 Species: Mus musculus Consensus sequence (original motif): BAATHAATTAATAAHWW Consensus sequence (reverse complement motif): WWDTTATTAATTHATTV Alignment: WWDTTATTAATTHATTV --WHTATTATTTDH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00051 Sox8_primary Original Motif Reverse Complement Backward 4 12 0.0120674 Species: Mus musculus Consensus sequence (original motif): DDATBWATTGTTHHDDD Consensus sequence (reverse complement motif): DDDHDAACAATWBATDD Alignment: DDDHDAACAATWBATDD --HDAAATAATAHW--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00180 Hoxd13 Reverse Complement Reverse Complement Forward 3 12 0.0123772 Species: Mus musculus Consensus sequence (original motif): HDHYYAATAAAAHHHH Consensus sequence (reverse complement motif): HDHHTTTTATTKKHDD Alignment: HDHHTTTTATTKKHDD --WHTATTATTTDH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00037 Zfp105_primary Reverse Complement Reverse Complement Forward 3 12 0.0129559 Species: Mus musculus Consensus sequence (original motif): HDYAAAHAAMAADHD Consensus sequence (reverse complement motif): HHHTTRTTDTTTKDH Alignment: HHHTTRTTDTTTKDH --WHTATTATTTDH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00064 Sox18_primary Original Motif Reverse Complement Forward 4 12 0.0130138 Species: Mus musculus Consensus sequence (original motif): BWBHATTGTTBTHDHH Consensus sequence (reverse complement motif): HHDHABAACAATHBWV Alignment: HHDHABAACAATHBWV ---HDAAATAATAHW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00255 Dbx1 Original Motif Original Motif Forward 4 12 0.0131034 Species: Mus musculus Consensus sequence (original motif): HARTHAATTAWTAVDHD Consensus sequence (reverse complement motif): DHDBTAWTAATTHAKTH Alignment: HARTHAATTAWTAVDHD ---HDAAATAATAHW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00024 Glis2_secondary Reverse Complement Original Motif Forward 1 12 0.0140433 Species: Mus musculus Consensus sequence (original motif): HDTATTAHTAAAVV Consensus sequence (reverse complement motif): BVTTTAHTAATADH Alignment: HDTATTAHTAAAVV WHTATTATTTDH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00075 Sox15_primary Reverse Complement Reverse Complement Backward 3 12 0.0143532 Species: Mus musculus Consensus sequence (original motif): HDDDDAACAATWRRBHD Consensus sequence (reverse complement motif): DHVKMWATTGTTHDHDH Alignment: DHVKMWATTGTTHDHDH ---WHTATTATTTDH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00096 Sox13_primary Reverse Complement Reverse Complement Backward 3 12 0.014607 Species: Mus musculus Consensus sequence (original motif): DHDRGAACAATWWDHW Consensus sequence (reverse complement motif): WHDWWATTGTTCKDHD Alignment: WHDWWATTGTTCKDHD --WHTATTATTTDH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 38 Motif name: cccGCCCCGCCCCsb Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB ************************************************************************ Best Matches for Motif ID 38 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Original Motif Backward 2 15 0.00481788 Species: Mus musculus Consensus sequence (original motif): HBDRCCMCGCCCHHHD Consensus sequence (reverse complement motif): DHHDGGGCGRGGKHBH Alignment: HBDRCCMCGCCCHHHD BCCGCCCCGCCCCBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Original Motif Original Motif Backward 3 15 0.0108117 Species: Mus musculus Consensus sequence (original motif): DHHBCCCCGCCAHHBHB Consensus sequence (reverse complement motif): BHBHDTGGCGGGGBDHD Alignment: DHHBCCCCGCCAHHBHB BCCGCCCCGCCCCBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Reverse Complement Reverse Complement Backward 1 15 0.0154152 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: GKRGGGGGGGGGGBD BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Original Motif Original Motif Forward 1 15 0.018287 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: HVBCCCCCCCCMHHHB BCCGCCCCGCCCCBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_secondary Reverse Complement Original Motif Forward 1 15 0.0247447 Species: Mus musculus Consensus sequence (original motif): BDWAGGCGTGBCHHD Consensus sequence (reverse complement motif): HHDGBCACGCCTWDB Alignment: HHDGBCACGCCTWDB BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_secondary Original Motif Reverse Complement Forward 1 15 0.0279869 Species: Mus musculus Consensus sequence (original motif): BBHBGAGTGGGAHHDB Consensus sequence (reverse complement motif): BHHDTCCCACTCBDBV Alignment: BHHDTCCCACTCBDBV BCCGCCCCGCCCCBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primary Reverse Complement Reverse Complement Backward 5 15 0.0312526 Species: Mus musculus Consensus sequence (original motif): HDGHHBHRGACCACCCGSVDVG Consensus sequence (reverse complement motif): CVHBSCGGGTGGTCMHVHHCDH Alignment: CVHBSCGGGTGGTCMHVHHCDH ---BBGGGGCGGGGCGGB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_secondary Original Motif Original Motif Forward 1 15 0.0318321 Species: Mus musculus Consensus sequence (original motif): BHVDCCCCDCCCBDBH Consensus sequence (reverse complement motif): HVDVGGGHGGGGDBHB Alignment: BHVDCCCCDCCCBDBH BCCGCCCCGCCCCBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Original Motif Reverse Complement Backward 4 15 0.0340857 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VHYTCCDWCCGCGTCMMTHWHV ----BCCGCCCCGCCCCBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primary Reverse Complement Reverse Complement Forward 4 15 0.0345185 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: CBDMCMGGGTGGTCCHVBVBAH ---BBGGGGCGGGGCGGB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 39 Motif name: kCAGCCAATmr Consensus sequence (original motif): DCAGCCAATVR Consensus sequence (reverse complement motif): MBATTGGCTGH ************************************************************************ Best Matches for Motif ID 39 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_primary Original Motif Reverse Complement Backward 3 11 0.000708728 Species: Mus musculus Consensus sequence (original motif): DVDDATGGGATGKMDDV Consensus sequence (reverse complement motif): BDDYYCATCCCATDDBD Alignment: BDDYYCATCCCATDDBD ----DCAGCCAATVR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00004 Sox14_secondary Original Motif Original Motif Backward 4 11 0.00658734 Species: Mus musculus Consensus sequence (original motif): BKBASACAATRGHBB Consensus sequence (reverse complement motif): BBDCMATTGTSTBRB Alignment: BKBASACAATRGHBB -DCAGCCAATVR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00249 Nkx2-5 Reverse Complement Reverse Complement Backward 1 11 0.00805715 Species: Mus musculus Consensus sequence (original motif): HDADCCACTTRAAWTT Consensus sequence (reverse complement motif): AAWTTMAAGTGGHTDH Alignment: AAWTTMAAGTGGHTDH -----MBATTGGCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00147 Nkx2-6 Original Motif Original Motif Backward 6 11 0.0128272 Species: Mus musculus Consensus sequence (original motif): DDADCCACTTAAVHTT Consensus sequence (reverse complement motif): AAHVTTAAGTGGHTDD Alignment: DDADCCACTTAAVHTT DCAGCCAATVR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00165 Titf1 Reverse Complement Reverse Complement Backward 1 11 0.0131729 Species: Mus musculus Consensus sequence (original motif): BVABCCACTTGAMHTT Consensus sequence (reverse complement motif): AAHYTCAAGTGGBTBV Alignment: AAHYTCAAGTGGBTBV -----MBATTGGCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Original Motif Original Motif Backward 8 11 0.0131873 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: HHBDHDDAACAATDRHHHHHBW ----DCAGCCAATVR------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00258 Tgif2 Original Motif Original Motif Backward 1 11 0.0132199 Species: Mus musculus Consensus sequence (original motif): AABBAGCTGTCAAWVV Consensus sequence (reverse complement motif): VBWTTGACAGCTVBTT Alignment: AABBAGCTGTCAAWVV -----DCAGCCAATVR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00205 Pknox2 Reverse Complement Reverse Complement Forward 1 11 0.0138143 Species: Mus musculus Consensus sequence (original motif): HAVSRSCTGTCAATHB Consensus sequence (reverse complement motif): VHATTGACAGSKSVTH Alignment: VHATTGACAGSKSVTH MBATTGGCTGH----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00023 Sox30_primary Reverse Complement Reverse Complement Forward 5 11 0.0141895 Species: Mus musculus Consensus sequence (original motif): DHDBAACAATDRHHHH Consensus sequence (reverse complement motif): HHHHMHATTGTTBDHD Alignment: HHHHMHATTGTTBDHD ----MBATTGGCTGH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00227 Duxl Original Motif Original Motif Forward 1 11 0.0154208 Species: Mus musculus Consensus sequence (original motif): YRACCCAATCAACVVHV Consensus sequence (reverse complement motif): VHVVGTTGATTGGGTMK Alignment: YRACCCAATCAACVVHV DCAGCCAATVR------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 40 Motif name: kcACCTGCAgc Consensus sequence (original motif): BCACCTGCABC Consensus sequence (reverse complement motif): GBTGCAGGTGB ************************************************************************ Best Matches for Motif ID 40 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00070 Gcm1_primary Reverse Complement Reverse Complement Forward 4 11 0 Species: Mus musculus Consensus sequence (original motif): HVVHACCCGCATVDHD Consensus sequence (reverse complement motif): DHDVATGCGGGTHVVH Alignment: DHDVATGCGGGTHVVH ---GBTGCAGGTGB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_primary Reverse Complement Reverse Complement Backward 4 11 0.000503863 Species: Mus musculus Consensus sequence (original motif): DDBBBCACTGCABTBBB Consensus sequence (reverse complement motif): BBBAVTGCAGTGBBVDD Alignment: BBBAVTGCAGTGBBVDD ---GBTGCAGGTGB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Original Motif Reverse Complement Forward 6 11 0.000557448 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: DHDBHGCACCTGBDDVB -----BCACCTGCABC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_primary Original Motif Original Motif Backward 3 11 0.00842747 Species: Mus musculus Consensus sequence (original motif): BBYVVCAGCTGCBVHHD Consensus sequence (reverse complement motif): HHDVVGCAGCTGVBKVB Alignment: BBYVVCAGCTGCBVHHD ----BCACCTGCABC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00420 Elk3 Original Motif Original Motif Backward 5 11 0.0111732 Species: Mus musculus Consensus sequence (original motif): DVBBACCGGAAGYDVVV Consensus sequence (reverse complement motif): VBVDMCTTCCGGTVBVD Alignment: DVBBACCGGAAGYDVVV --BCACCTGCABC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Original Motif Reverse Complement Forward 9 11 0.0122671 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM --------BCACCTGCABC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00092 Myb_secondary Original Motif Original Motif Forward 4 11 0.015733 Species: Mus musculus Consensus sequence (original motif): BDACCAACTGCCRBBH Consensus sequence (reverse complement motif): DBVKGGCAGTTGGTHB Alignment: BDACCAACTGCCRBBH ---BCACCTGCABC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00236 Irx2 Reverse Complement Reverse Complement Backward 4 11 0.0163141 Species: Mus musculus Consensus sequence (original motif): WDDDTACATGTADDWBW Consensus sequence (reverse complement motif): WVWDDTACATGTADDDW Alignment: WVWDDTACATGTADDDW ---GBTGCAGGTGB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00223 Irx3_0920.1 Original Motif Reverse Complement Forward 5 11 0.0165255 Species: Mus musculus Consensus sequence (original motif): DDDDTACATGTAVWWHD Consensus sequence (reverse complement motif): DDWWBTACATGTADDDD Alignment: DDWWBTACATGTADDDD ----BCACCTGCABC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_secondary Original Motif Reverse Complement Backward 5 11 0.0169178 Species: Mus musculus Consensus sequence (original motif): HHDCVCAGCAKGVVD Consensus sequence (reverse complement motif): DVBCYTGCTGBGDDD Alignment: DVBCYTGCTGBGDDD BCACCTGCABC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 41 Motif name: wwAAATAATAtw Consensus sequence (original motif): HDAAATAATADD Consensus sequence (reverse complement motif): DDTATTATTTDH ************************************************************************ Best Matches for Motif ID 41 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00244 Tlx2 Reverse Complement Reverse Complement Backward 4 12 0.00576686 Species: Mus musculus Consensus sequence (original motif): BAATHAATTAATAAHWW Consensus sequence (reverse complement motif): WWDTTATTAATTHATTV Alignment: WWDTTATTAATTHATTV --DDTATTATTTDH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00121 Hoxd10 Reverse Complement Reverse Complement Forward 4 12 0.00673636 Species: Mus musculus Consensus sequence (original motif): VDKVYAATAAAATDDDH Consensus sequence (reverse complement motif): HDDDATTTTATTKVRDB Alignment: HDDDATTTTATTKVRDB ---DDTATTATTTDH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00180 Hoxd13 Reverse Complement Reverse Complement Backward 3 12 0.00685179 Species: Mus musculus Consensus sequence (original motif): HDHYYAATAAAAHHHH Consensus sequence (reverse complement motif): HDHHTTTTATTKKHDD Alignment: HDHHTTTTATTKKHDD --DDTATTATTTDH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_secondary Original Motif Original Motif Forward 1 12 0.0108327 Species: Mus musculus Consensus sequence (original motif): VVDAATAACAAAVVB Consensus sequence (reverse complement motif): BVVTTTGTTATTDBB Alignment: VVDAATAACAAAVVB HDAAATAATADD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00134 Hoxb13 Reverse Complement Reverse Complement Forward 3 12 0.0121723 Species: Mus musculus Consensus sequence (original motif): VRHCCAATAAAAWHHV Consensus sequence (reverse complement motif): VDHWTTTTATTGGDKB Alignment: VDHWTTTTATTGGDKB --DDTATTATTTDH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00255 Dbx1 Original Motif Original Motif Forward 4 12 0.0133808 Species: Mus musculus Consensus sequence (original motif): HARTHAATTAWTAVDHD Consensus sequence (reverse complement motif): DHDBTAWTAATTHAKTH Alignment: HARTHAATTAWTAVDHD ---HDAAATAATADD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Original Motif Original Motif Backward 7 12 0.0144702 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: HHBDHDDAACAATDRHHHHHBW ----HDAAATAATADD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00051 Sox8_primary Reverse Complement Original Motif Forward 4 12 0.0145614 Species: Mus musculus Consensus sequence (original motif): DDATBWATTGTTHHDDD Consensus sequence (reverse complement motif): DDDHDAACAATWBATDD Alignment: DDATBWATTGTTHHDDD ---DDTATTATTTDH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00024 Glis2_secondary Original Motif Reverse Complement Backward 1 12 0.0148858 Species: Mus musculus Consensus sequence (original motif): HDTATTAHTAAAVV Consensus sequence (reverse complement motif): BVTTTAHTAATADH Alignment: BVTTTAHTAATADH --HDAAATAATADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00096 Sox13_primary Original Motif Original Motif Forward 3 12 0.014968 Species: Mus musculus Consensus sequence (original motif): DHDRGAACAATWWDHW Consensus sequence (reverse complement motif): WHDWWATTGTTCKDHD Alignment: DHDRGAACAATWWDHW --HDAAATAATADD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 42 Motif name: sSGTCACGTGACSs Consensus sequence (original motif): SGGTCACGTGACCS Consensus sequence (reverse complement motif): SGGTCACGTGACCS ************************************************************************ Best Matches for Motif ID 42 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Original Motif Original Motif Backward 5 14 0 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: RDHDBVDTCACGTGASBHVHDH ----SGGTCACGTGACCS---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_primary Original Motif Reverse Complement Backward 1 14 0.0226905 Species: Mus musculus Consensus sequence (original motif): DDASCACGTGBTBVDD Consensus sequence (reverse complement motif): HHVBABCACGTGSTHD Alignment: DDASCACGTGBTBVDD --SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Reverse Complement Original Motif Backward 1 14 0.0240371 Species: Mus musculus Consensus sequence (original motif): BBGHCACGCGACDD Consensus sequence (reverse complement motif): HDGTCGCGTGDCVB Alignment: BBGHCACGCGACDD SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00103 Jundm2_primary Original Motif Original Motif Backward 2 14 0.0253986 Species: Mus musculus Consensus sequence (original motif): BBGATGACGTCAYCVH Consensus sequence (reverse complement motif): HVGMTGACGTCATCBB Alignment: BBGATGACGTCAYCVH -SGGTCACGTGACCS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00020 Atf1_primary Original Motif Original Motif Forward 2 14 0.0259163 Species: Mus musculus Consensus sequence (original motif): DBDRTGACGTCAYHRD Consensus sequence (reverse complement motif): DMDMTGACGTCAKHBD Alignment: DBDRTGACGTCAYHRD -SGGTCACGTGACCS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Reverse Complement Reverse Complement Forward 6 14 0.0403911 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM -----SGGTCACGTGACCS---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00036 Myf6_primary Original Motif Original Motif Backward 1 14 0.0440464 Species: Mus musculus Consensus sequence (original motif): VVDBAACAGBTGBYHB Consensus sequence (reverse complement motif): BDKVCABCTGTTBDBV Alignment: VVDBAACAGBTGBYHB --SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_secondary Reverse Complement Reverse Complement Forward 3 14 0.0471124 Species: Mus musculus Consensus sequence (original motif): HVDDVCAGATGKYHBBV Consensus sequence (reverse complement motif): VBBDMYCATCTGVHHBH Alignment: VBBDMYCATCTGVHHBH --SGGTCACGTGACCS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00165 Titf1 Reverse Complement Original Motif Forward 2 14 0.0471926 Species: Mus musculus Consensus sequence (original motif): BVABCCACTTGAMHTT Consensus sequence (reverse complement motif): AAHYTCAAGTGGBTBV Alignment: BVABCCACTTGAMHTT -SGGTCACGTGACCS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Original Motif Reverse Complement Backward 2 14 0.0506329 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: DHDBHGCACCTGBDDVB --SGGTCACGTGACCS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 43 Motif name: wsTACwGTAsw Consensus sequence (original motif): HVTACWGTABD Consensus sequence (reverse complement motif): DBTACWGTAVH ************************************************************************ Best Matches for Motif ID 43 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00052 Osr2_primary Reverse Complement Reverse Complement Forward 5 11 0 Species: Mus musculus Consensus sequence (original motif): HHVHACRGTAGCHHHD Consensus sequence (reverse complement motif): HHHHGCTACKGTHVHH Alignment: HHHHGCTACKGTHVHH ----DBTACWGTAVH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00027 Osr1_primary Reverse Complement Reverse Complement Backward 2 11 0.00480574 Species: Mus musculus Consensus sequence (original motif): HHDHACRGTAGCHVHD Consensus sequence (reverse complement motif): DHBHGCTACKGTHDHH Alignment: DHBHGCTACKGTHDHH ----DBTACWGTAVH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_primary Original Motif Reverse Complement Forward 4 11 0.0165381 Species: Mus musculus Consensus sequence (original motif): DDBBBCACTGCABTBBB Consensus sequence (reverse complement motif): BBBAVTGCAGTGBBVDD Alignment: BBBAVTGCAGTGBBVDD ---HVTACWGTABD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Reverse Complement Original Motif Backward 7 11 0.0248017 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: HHBDHDDAACAATDRHHHHHBW -----DBTACWGTAVH------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00023 Sox30_primary Original Motif Reverse Complement Backward 3 11 0.0294174 Species: Mus musculus Consensus sequence (original motif): DHDBAACAATDRHHHH Consensus sequence (reverse complement motif): HHHHMHATTGTTBDHD Alignment: HHHHMHATTGTTBDHD ---HVTACWGTABD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00075 Sox15_primary Original Motif Reverse Complement Forward 4 11 0.0301544 Species: Mus musculus Consensus sequence (original motif): HDDDDAACAATWRRBHD Consensus sequence (reverse complement motif): DHVKMWATTGTTHDHDH Alignment: DHVKMWATTGTTHDHDH ---HVTACWGTABD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00016 Sry_secondary Reverse Complement Reverse Complement Backward 5 11 0.0310991 Species: Mus musculus Consensus sequence (original motif): HHDHDRAACAATDDVHV Consensus sequence (reverse complement motif): VHVHDATTGTTMHDDDH Alignment: VHVHDATTGTTMHDDDH --DBTACWGTAVH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00064 Sox18_primary Reverse Complement Original Motif Forward 2 11 0.031364 Species: Mus musculus Consensus sequence (original motif): BWBHATTGTTBTHDHH Consensus sequence (reverse complement motif): HHDHABAACAATHBWV Alignment: BWBHATTGTTBTHDHH -DBTACWGTAVH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00092 Myb_primary Reverse Complement Original Motif Backward 4 11 0.0314236 Species: Mus musculus Consensus sequence (original motif): HDDDHAACCGTTAHHHD Consensus sequence (reverse complement motif): DHHHTAACGGTTHHHDH Alignment: HDDDHAACCGTTAHHHD ---DBTACWGTAVH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00071 Sox21_secondary Original Motif Original Motif Backward 5 11 0.0319794 Species: Mus musculus Consensus sequence (original motif): VVYBWATTGTTCVBHDV Consensus sequence (reverse complement motif): BDDBVGAACAATWBMBV Alignment: VVYBWATTGTTCVBHDV --HVTACWGTABD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 44 Motif name: dhACATTCTkh Consensus sequence (original motif): DHACATTCTGH Consensus sequence (reverse complement motif): HCAGAATGTHD ************************************************************************ Best Matches for Motif ID 44 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00038 Spdef_secondary Reverse Complement Reverse Complement Forward 4 11 0.00581553 Species: Mus musculus Consensus sequence (original motif): DDBHACATCCTAKWDV Consensus sequence (reverse complement motif): VDWYTAGGATGTHVDH Alignment: VDWYTAGGATGTHVDH ---HCAGAATGTHD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Original Motif Reverse Complement Forward 8 11 0.00582895 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: DCATDBTGHGCATKMTTBRSWR -------DHACATTCTGH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00023 Sox30_primary Original Motif Reverse Complement Backward 4 11 0.00613057 Species: Mus musculus Consensus sequence (original motif): DHDBAACAATDRHHHH Consensus sequence (reverse complement motif): HHHHMHATTGTTBDHD Alignment: HHHHMHATTGTTBDHD --DHACATTCTGH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Original Motif Reverse Complement Forward 6 11 0.0119275 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: WBHHHHHMDATTGTTHDHDVHH -----DHACATTCTGH------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Original Motif Reverse Complement Forward 3 11 0.0122803 Species: Mus musculus Consensus sequence (original motif): HBDDRAACAAAGRABHH Consensus sequence (reverse complement motif): HHBTMCTTTGTTMDDVH Alignment: HHBTMCTTTGTTMDDVH --DHACATTCTGH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00250 Irx5 Original Motif Reverse Complement Backward 3 11 0.0132772 Species: Mus musculus Consensus sequence (original motif): DDDHWACATGTWHDABW Consensus sequence (reverse complement motif): WVTDHWACATGTWHDDD Alignment: WVTDHWACATGTWHDDD ----DHACATTCTGH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_secondary Reverse Complement Original Motif Forward 5 11 0.0141401 Species: Mus musculus Consensus sequence (original motif): HHDCVCAGCAKGVVD Consensus sequence (reverse complement motif): DVBCYTGCTGBGDDD Alignment: HHDCVCAGCAKGVVD ----HCAGAATGTHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Original Motif Reverse Complement Forward 3 11 0.0143902 Species: Mus musculus Consensus sequence (original motif): HBDDDAACAAAGRVBHH Consensus sequence (reverse complement motif): HHBBMCTTTGTTHDDBH Alignment: HHBBMCTTTGTTHDDBH --DHACATTCTGH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00004 Sox14_secondary Reverse Complement Original Motif Backward 2 11 0.0151959 Species: Mus musculus Consensus sequence (original motif): BKBASACAATRGHBB Consensus sequence (reverse complement motif): BBDCMATTGTSTBRB Alignment: BKBASACAATRGHBB ---HCAGAATGTHD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00064 Sox18_primary Original Motif Original Motif Backward 6 11 0.015273 Species: Mus musculus Consensus sequence (original motif): BWBHATTGTTBTHDHH Consensus sequence (reverse complement motif): HHDHABAACAATHBWV Alignment: BWBHATTGTTBTHDHH DHACATTCTGH----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 45 Motif name: wbgTAAATAww Consensus sequence (original motif): DBGTAAATAHD Consensus sequence (reverse complement motif): DHTATTTACBD ************************************************************************ Best Matches for Motif ID 45 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00242 Hoxc8 Reverse Complement Reverse Complement Backward 4 11 0 Species: Mus musculus Consensus sequence (original motif): BHDDDGTAATTAHHDT Consensus sequence (reverse complement motif): AHDHTAATTACHHHHV Alignment: AHDHTAATTACHHHHV --DHTATTTACBD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_primary Original Motif Original Motif Backward 4 11 0.00453517 Species: Mus musculus Consensus sequence (original motif): HHWAWGTAAAYAAAVDB Consensus sequence (reverse complement motif): BDVTTTKTTTACWTWHH Alignment: HHWAWGTAAAYAAAVDB ---DBGTAAATAHD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_primary Original Motif Original Motif Forward 4 11 0.00490457 Species: Mus musculus Consensus sequence (original motif): HDHADGTAAACAAAVVH Consensus sequence (reverse complement motif): DVVTTTGTTTACDTHDH Alignment: HDHADGTAAACAAAVVH ---DBGTAAATAHD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00041 Foxj1_primary Original Motif Original Motif Backward 5 11 0.00656547 Species: Mus musculus Consensus sequence (original motif): HDHRTAAACAAAHDDD Consensus sequence (reverse complement motif): DDDHTTTGTTTAMHDH Alignment: HDHRTAAACAAAHDDD -DBGTAAATAHD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00182 Hoxa6 Original Motif Reverse Complement Forward 4 11 0.0086354 Species: Mus musculus Consensus sequence (original motif): AMGKTAATTACCHHAD Consensus sequence (reverse complement motif): DTHHGGTAATTAYCYT Alignment: DTHHGGTAATTAYCYT ---DBGTAAATAHD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00260 Hoxc6 Reverse Complement Original Motif Forward 4 11 0.0092156 Species: Mus musculus Consensus sequence (original motif): BRHVKTAATTAMBDVVD Consensus sequence (reverse complement motif): DBBDVYTAATTARBHKB Alignment: BRHVKTAATTAMBDVVD ---DHTATTTACBD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00164 Hoxa7_2668.2 Reverse Complement Original Motif Forward 4 11 0.00942246 Species: Mus musculus Consensus sequence (original motif): VVHDDTAATTAHTDDBC Consensus sequence (reverse complement motif): GBDDAHTAATTADHHVV Alignment: VVHDDTAATTAHTDDBC ---DHTATTTACBD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00259 Hoxb6 Original Motif Reverse Complement Forward 2 11 0.00949005 Species: Mus musculus Consensus sequence (original motif): WWTDBGTAATTACVDB Consensus sequence (reverse complement motif): VDVGTAATTACBDAWW Alignment: VDVGTAATTACBDAWW -DBGTAAATAHD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00254 Pou2f1 Original Motif Reverse Complement Forward 2 11 0.00998499 Species: Mus musculus Consensus sequence (original motif): DHDHRHTAATTARBTW Consensus sequence (reverse complement motif): WABKTAATTAHKHHHD Alignment: WABKTAATTAHKHHHD -DBGTAAATAHD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00110 Dlx4 Original Motif Reverse Complement Forward 3 11 0.0107458 Species: Mus musculus Consensus sequence (original motif): BCVVDATAATTACMVHC Consensus sequence (reverse complement motif): GHVRGTAATTATDVVGV Alignment: GHVRGTAATTATDVVGV --DBGTAAATAHD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 46 Motif name: TFW1 Consensus sequence (original motif): GTCGCG Consensus sequence (reverse complement motif): CGCGAC ************************************************************************ Best Matches for Motif ID 46 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_secondary Original Motif Original Motif Backward 9 6 0 Species: Mus musculus Consensus sequence (original motif): GYCGCGCARBGCVB Consensus sequence (reverse complement motif): VVGCVMTGCGCGKC Alignment: GYCGCGCARBGCVB GTCGCG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Reverse Complement Original Motif Backward 3 6 0.00875457 Species: Mus musculus Consensus sequence (original motif): BBGHCACGCGACDD Consensus sequence (reverse complement motif): HDGTCGCGTGDCVB Alignment: BBGHCACGCGACDD ------CGCGAC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_primary Reverse Complement Reverse Complement Backward 6 6 0.0102952 Species: Mus musculus Consensus sequence (original motif): VHDADGGCGCGCSHW Consensus sequence (reverse complement motif): WHSGCGCGCCHTDHB Alignment: WHSGCGCGCCHTDHB ----CGCGAC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Reverse Complement Original Motif Backward 7 6 0.0119605 Species: Mus musculus Consensus sequence (original motif): WHVBVVMACGCGCGTCDYHWDH Consensus sequence (reverse complement motif): HDWHMHGACGCGCGTRBVVBHW Alignment: WHVBVVMACGCGCGTCDYHWDH ----------CGCGAC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Original Motif Original Motif Backward 10 6 0.014366 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VDWDARRGACGCGGWHGGAKHV -------GTCGCG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_primary Reverse Complement Reverse Complement Forward 10 6 0.0143989 Species: Mus musculus Consensus sequence (original motif): DDGCGCGCGCRCHYRD Consensus sequence (reverse complement motif): DMMDGMGCGCGCGCHD Alignment: DMMDGMGCGCGCGCHD ---------CGCGAC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00001 E2F2_primary Reverse Complement Reverse Complement Forward 5 6 0.0147239 Species: Mus musculus Consensus sequence (original motif): VHDARGGCGCGCVHH Consensus sequence (reverse complement motif): HHVGCGCGCCKTDHB Alignment: HHVGCGCGCCKTDHB ----CGCGAC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_secondary Original Motif Reverse Complement Backward 7 6 0.0222574 Species: Mus musculus Consensus sequence (original motif): BDWAGGCGTGBCHHD Consensus sequence (reverse complement motif): HHDGBCACGCCTWDB Alignment: HHDGBCACGCCTWDB ---GTCGCG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00049 Sp100_secondary Original Motif Original Motif Backward 7 6 0.0300795 Species: Mus musculus Consensus sequence (original motif): BBCGTCGHBTAAWDB Consensus sequence (reverse complement motif): BDWTTAVDCGACGBV Alignment: BBCGTCGHBTAAWDB ---GTCGCG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Original Motif Reverse Complement Forward 5 6 0.0317992 Species: Mus musculus Consensus sequence (original motif): DHHBCCCCGCCAHHBHB Consensus sequence (reverse complement motif): BHBHDTGGCGGGGBDHD Alignment: BHBHDTGGCGGGGBDHD ----GTCGCG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 47 Motif name: TFW2 Consensus sequence (original motif): SCGCGCGG Consensus sequence (reverse complement motif): CCGCGCGS ************************************************************************ Best Matches for Motif ID 47 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Reverse Complement Reverse Complement Backward 8 8 0 Species: Mus musculus Consensus sequence (original motif): WHVBVVMACGCGCGTCDYHWDH Consensus sequence (reverse complement motif): HDWHMHGACGCGCGTRBVVBHW Alignment: HDWHMHGACGCGCGTRBVVBHW -------CCGCGCGS------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_secondary Reverse Complement Reverse Complement Backward 2 8 0.00228411 Species: Mus musculus Consensus sequence (original motif): GYCGCGCARBGCVB Consensus sequence (reverse complement motif): VVGCVMTGCGCGKC Alignment: VVGCVMTGCGCGKC -----CCGCGCGS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_primary Reverse Complement Reverse Complement Backward 7 8 0.00337853 Species: Mus musculus Consensus sequence (original motif): VHDADGGCGCGCSHW Consensus sequence (reverse complement motif): WHSGCGCGCCHTDHB Alignment: WHSGCGCGCCHTDHB -CCGCGCGS------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00001 E2F2_primary Reverse Complement Reverse Complement Forward 2 8 0.00399923 Species: Mus musculus Consensus sequence (original motif): VHDARGGCGCGCVHH Consensus sequence (reverse complement motif): HHVGCGCGCCKTDHB Alignment: HHVGCGCGCCKTDHB -CCGCGCGS------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_primary Reverse Complement Original Motif Backward 5 8 0.00484534 Species: Mus musculus Consensus sequence (original motif): DDGCGCGCGCRCHYRD Consensus sequence (reverse complement motif): DMMDGMGCGCGCGCHD Alignment: DDGCGCGCGCRCHYRD ----CCGCGCGS---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondary Reverse Complement Reverse Complement Forward 7 8 0.0149577 Species: Mus musculus Consensus sequence (original motif): DDRMHBACGCGYGCGTDGBBDB Consensus sequence (reverse complement motif): BDVBCDACGCKCGCGTBHRKHD Alignment: BDVBCDACGCKCGCGTBHRKHD ------CCGCGCGS-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Reverse Complement Forward 6 8 0.0194485 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB -----SCGCGCGG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_secondary Reverse Complement Original Motif Forward 6 8 0.0230299 Species: Mus musculus Consensus sequence (original motif): DDDTWCCCCCCGGDRVH Consensus sequence (reverse complement motif): HVKDCCGGGGGGWADDD Alignment: DDDTWCCCCCCGGDRVH -----CCGCGCGS---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Reverse Complement Original Motif Forward 6 8 0.0247841 Species: Mus musculus Consensus sequence (original motif): HCCGCCCCCGCAHB Consensus sequence (reverse complement motif): VHTGCGGGGGCGGH Alignment: HCCGCCCCCGCAHB -----CCGCGCGS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_secondary Reverse Complement Reverse Complement Forward 7 8 0.0249557 Species: Mus musculus Consensus sequence (original motif): BBHBGAGTGGGAHHDB Consensus sequence (reverse complement motif): BHHDTCCCACTCBDBV Alignment: BHHDTCCCACTCBDBV ------CCGCGCGS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 48 Motif name: TFW3 Consensus sequence (original motif): CGGCYBCGCG Consensus sequence (reverse complement motif): CGCGBMGCCG ************************************************************************ Best Matches for Motif ID 48 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Reverse Complement Backward 8 10 0.0331859 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB ------CGCGBMGCCG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Original Motif Original Motif Backward 3 10 0.0342114 Species: Mus musculus Consensus sequence (original motif): HCCGCCCCCGCAHB Consensus sequence (reverse complement motif): VHTGCGGGGGCGGH Alignment: HCCGCCCCCGCAHB --CGGCYBCGCG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_primary Original Motif Original Motif Forward 12 10 0.0356548 Species: Mus musculus Consensus sequence (original motif): DBBVDDDRTRGCGTCBBYTHGA Consensus sequence (reverse complement motif): TCDAMVBGACGCMAKDDDVBBD Alignment: DBBVDDDRTRGCGTCBBYTHGA -----------CGGCYBCGCG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Reverse Complement Reverse Complement Forward 11 10 0.041792 Species: Mus musculus Consensus sequence (original motif): WHVBVVMACGCGCGTCDYHWDH Consensus sequence (reverse complement motif): HDWHMHGACGCGCGTRBVVBHW Alignment: HDWHMHGACGCGCGTRBVVBHW ----------CGCGBMGCCG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_primary Reverse Complement Original Motif Backward 2 10 0.041904 Species: Mus musculus Consensus sequence (original motif): DDGCGCGCGCRCHYRD Consensus sequence (reverse complement motif): DMMDGMGCGCGCGCHD Alignment: DDGCGCGCGCRCHYRD -----CGCGBMGCCG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_secondary Original Motif Reverse Complement Backward 5 10 0.0419429 Species: Mus musculus Consensus sequence (original motif): GYCGCGCARBGCVB Consensus sequence (reverse complement motif): VVGCVMTGCGCGKC Alignment: VVGCVMTGCGCGKC CGGCYBCGCG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_secondary Reverse Complement Original Motif Backward 2 10 0.0475178 Species: Mus musculus Consensus sequence (original motif): BDWAGGCGTGBCHHD Consensus sequence (reverse complement motif): HHDGBCACGCCTWDB Alignment: BDWAGGCGTGBCHHD ----CGCGBMGCCG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Original Motif Original Motif Backward 1 10 0.0490044 Species: Mus musculus Consensus sequence (original motif): DHHBCCCCGCCAHHBHB Consensus sequence (reverse complement motif): BHBHDTGGCGGGGBDHD Alignment: DHHBCCCCGCCAHHBHB -------CGGCYBCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00087 Tcfap2c_primary Original Motif Reverse Complement Forward 3 10 0.0499902 Species: Mus musculus Consensus sequence (original motif): WHHSCCYSRGGSDAD Consensus sequence (reverse complement motif): DTHSCCKSMGGSHHW Alignment: DTHSCCKSMGGSHHW --CGGCYBCGCG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_primary Original Motif Reverse Complement Backward 4 10 0.0500462 Species: Mus musculus Consensus sequence (original motif): WDHSCCYSRGGSRAD Consensus sequence (reverse complement motif): DTMSCCKSMGGSHDW Alignment: DTMSCCKSMGGSHDW --CGGCYBCGCG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 49 Motif name: TFF1 Consensus sequence (original motif): CGGVGCCGCVGC Consensus sequence (reverse complement motif): GCVGCGGCBCCG ************************************************************************ Best Matches for Motif ID 49 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_secondary Original Motif Original Motif Forward 5 12 0.0423593 Species: Mus musculus Consensus sequence (original motif): HBHWYGGCGCCAMDVBB Consensus sequence (reverse complement motif): BBBDYTGGCGCCKWDBD Alignment: HBHWYGGCGCCAMDVBB ----CGGVGCCGCVGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00001 E2F2_secondary Original Motif Original Motif Forward 5 12 0.046515 Species: Mus musculus Consensus sequence (original motif): HVBWYGGCGCCAADVBB Consensus sequence (reverse complement motif): BBBDTTGGCGCCKWVVD Alignment: HVBWYGGCGCCAADVBB ----CGGVGCCGCVGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00088 Plagl1_primary Reverse Complement Original Motif Forward 1 12 0.0472704 Species: Mus musculus Consensus sequence (original motif): BHDGGGGSSCCCCBVV Consensus sequence (reverse complement motif): VBVGGGGSSCCCCHHV Alignment: VBVGGGGSSCCCCHHV GCVGCGGCBCCG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_primary Reverse Complement Original Motif Forward 5 12 0.0476914 Species: Mus musculus Consensus sequence (original motif): BBYVVCAGCTGCBVHHD Consensus sequence (reverse complement motif): HHDVVGCAGCTGVBKVB Alignment: BBYVVCAGCTGCBVHHD ----GCVGCGGCBCCG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_secondary Reverse Complement Original Motif Backward 5 12 0.0508178 Species: Mus musculus Consensus sequence (original motif): HBBBCCGCCCCWHHHV Consensus sequence (reverse complement motif): BHHHWGGGGCGGBBVH Alignment: HBBBCCGCCCCWHHHV GCVGCGGCBCCG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondary Reverse Complement Original Motif Backward 5 12 0.0533422 Species: Mus musculus Consensus sequence (original motif): BHHBHCCGCCCCDHHHH Consensus sequence (reverse complement motif): HHHHDGGGGCGGDBHDV Alignment: BHHBHCCGCCCCDHHHH -GCVGCGGCBCCG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondary Original Motif Reverse Complement Forward 9 12 0.0561199 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK --------CGGVGCCGCVGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Reverse Complement Original Motif Forward 2 12 0.0577556 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BDHHMCGCCCCCTHVBB -GCVGCGGCBCCG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Reverse Complement Original Motif Backward 6 12 0.0577695 Species: Mus musculus Consensus sequence (original motif): DHHBCCCCGCCAHHBHB Consensus sequence (reverse complement motif): BHBHDTGGCGGGGBDHD Alignment: DHHBCCCCGCCAHHBHB GCVGCGGCBCCG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Original Motif Original Motif Backward 3 12 0.0581164 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: DVTTVVCVYGGHGGYCHHDMYB --------CGGVGCCGCVGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 50 Motif name: TFF11 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC ************************************************************************ Best Matches for Motif ID 50 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Reverse Complement Original Motif Backward 1 14 0.0294317 Species: Mus musculus Consensus sequence (original motif): DHHBCCCCGCCAHHBHB Consensus sequence (reverse complement motif): BHBHDTGGCGGGGBDHD Alignment: BHBHDTGGCGGGGBDHD ---GCVCCGCCMCCYCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Reverse Complement Original Motif Forward 2 14 0.0308559 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BDHHMCGCCCCCTHVBB -GCVCCGCCMCCYCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondary Reverse Complement Original Motif Forward 3 14 0.0379479 Species: Mus musculus Consensus sequence (original motif): BHHBHCCGCCCCDHHHH Consensus sequence (reverse complement motif): HHHHDGGGGCGGDBHDV Alignment: BHHBHCCGCCCCDHHHH --GCVCCGCCMCCYCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_secondary Reverse Complement Original Motif Forward 2 14 0.0383359 Species: Mus musculus Consensus sequence (original motif): HBBBCCGCCCCWHHHV Consensus sequence (reverse complement motif): BHHHWGGGGCGGBBVH Alignment: HBBBCCGCCCCWHHHV -GCVCCGCCMCCYCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Original Motif Reverse Complement Backward 2 14 0.0388307 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: GKRGGGGGGGGGGBD GGMGGRGGCGGVGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondary Reverse Complement Original Motif Forward 3 14 0.039083 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH --GCVCCGCCMCCYCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Reverse Complement Original Motif Backward 1 14 0.0439675 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: BHHDYGGGGGGGGBVD --GCVCCGCCMCCYCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Reverse Complement Original Motif Backward 5 14 0.0542214 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH -----GCVCCGCCMCCYCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Reverse Complement Reverse Complement Forward 3 14 0.0549119 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH --GCVCCGCCMCCYCC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Original Motif Backward 7 14 0.0551379 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: BADHBDHCGCCCMCGCAHHDBBV ---GCVCCGCCMCCYCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 51 Motif name: TFM2 Consensus sequence (original motif): RGRGGAGRRGGHGGDG Consensus sequence (reverse complement motif): CHCCBCCKMCTCCKCM ************************************************************************ Best Matches for Motif ID 51 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondary Reverse Complement Original Motif Backward 2 16 0.0508679 Species: Mus musculus Consensus sequence (original motif): BHHBHCCGCCCCDHHHH Consensus sequence (reverse complement motif): HHHHDGGGGCGGDBHDV Alignment: BHHBHCCGCCCCDHHHH CHCCBCCKMCTCCKCM- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_secondary Original Motif Original Motif Backward 1 16 0.0564739 Species: Mus musculus Consensus sequence (original motif): BBHBGAGTGGGAHHDB Consensus sequence (reverse complement motif): BHHDTCCCACTCBDBV Alignment: BBHBGAGTGGGAHHDB RGRGGAGRRGGHGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Original Motif Backward 4 16 0.0588056 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: BADHBDHCGCCCMCGCAHHDBBV ----CHCCBCCKMCTCCKCM--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondary Reverse Complement Original Motif Forward 4 16 0.0589361 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH ---CHCCBCCKMCTCCKCM--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Original Motif Reverse Complement Forward 1 16 0.0599837 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: BHHDYGGGGGGGGBVD RGRGGAGRRGGHGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Reverse Complement Original Motif Forward 2 16 0.06023 Species: Mus musculus Consensus sequence (original motif): DHHBCCCCGCCAHHBHB Consensus sequence (reverse complement motif): BHBHDTGGCGGGGBDHD Alignment: DHHBCCCCGCCAHHBHB -CHCCBCCKMCTCCKCM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Reverse Complement Reverse Complement Backward 7 16 0.060636 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: DVMHHDHKGACCCTCCTSVCBH CHCCBCCKMCTCCKCM------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Reverse Complement Original Motif Backward 1 16 0.0621813 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: DVVTTVGTGGGHGGYAMHWHHHY -------CHCCBCCKMCTCCKCM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_secondary Original Motif Reverse Complement Backward 1 16 0.0624626 Species: Mus musculus Consensus sequence (original motif): BHVDCCCCDCCCBDBH Consensus sequence (reverse complement motif): HVDVGGGHGGGGDBHB Alignment: HVDVGGGHGGGGDBHB RGRGGAGRRGGHGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Original Motif Reverse Complement Forward 5 16 0.0627639 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: HHBSHTCGTGRGTGGKGDBVWMV ----RGRGGAGRRGGHGGDG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 52 Motif name: TFM1 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW ************************************************************************ Best Matches for Motif ID 52 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Reverse Complement Original Motif Forward 5 18 0.0406097 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: HHBDHDDAACAATDRHHHHHBW ----ABAAAAAAWHAAAAARAW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Original Motif Reverse Complement Backward 2 18 0.0549239 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: HBHDVHDTCTTATCTHTDDHDV ---WTKTTTTTHWTTTTTTBT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Reverse Complement Reverse Complement Forward 4 18 0.0554316 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC ---ABAAAAAAWHAAAAARAW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Reverse Complement Original Motif Forward 2 18 0.0582891 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: MWSMBAARRATGCDCABHATGD -ABAAAAAAWHAAAAARAW--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondary Reverse Complement Original Motif Backward 3 18 0.0594078 Species: Mus musculus Consensus sequence (original motif): HBHDVBWGATHBTATCRVBHHH Consensus sequence (reverse complement motif): HHHBBMGATAVHATCWVVDHVH Alignment: HBHDVBWGATHBTATCRVBHHH --ABAAAAAAWHAAAAARAW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Original Motif Reverse Complement Backward 5 18 0.0717094 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: HHBSHTCGTGRGTGGKGDBVWMV -WTKTTTTTHWTTTTTTBT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_primary Reverse Complement Reverse Complement Forward 2 18 0.0722891 Species: Mus musculus Consensus sequence (original motif): DBBVDDDRTRGCGTCBBYTHGA Consensus sequence (reverse complement motif): TCDAMVBGACGCMAKDDDVBBD Alignment: TCDAMVBGACGCMAKDDDVBBD -ABAAAAAAWHAAAAARAW--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Original Motif Reverse Complement Backward 4 18 0.0734635 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM -WTKTTTTTHWTTTTTTBT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_secondary Original Motif Reverse Complement Backward 2 17 0.531811 Species: Mus musculus Consensus sequence (original motif): VBDDAAAAAAAAMVBHH Consensus sequence (reverse complement motif): HHVBYTTTTTTTTDDVV Alignment: -VBDDAAAAAAAAMVBHH WTKTTTTTHWTTTTTTBT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00090 Elf3_secondary Reverse Complement Original Motif Forward 1 17 0.538813 Species: Mus musculus Consensus sequence (original motif): DBTHHAAAAAAAAVHDH Consensus sequence (reverse complement motif): DDHBTTTTTTTTHDAVH Alignment: DDHBTTTTTTTTHDAVH- ABAAAAAAWHAAAAARAW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 53 Motif name: TFM3 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW ************************************************************************ Best Matches for Motif ID 53 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Original Motif Reverse Complement Forward 1 18 0.0560226 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC WWHTTTTTCABAAWTTWA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Original Motif Original Motif Backward 2 18 0.065044 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: BDHDDADAGATAAGADHBDHVD ---WWHTTTTTCABAAWTTWA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondary Original Motif Original Motif Backward 1 18 0.0697095 Species: Mus musculus Consensus sequence (original motif): HBHDVBWGATHBTATCRVBHHH Consensus sequence (reverse complement motif): HHHBBMGATAVHATCWVVDHVH Alignment: HBHDVBWGATHBTATCRVBHHH ----WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Reverse Complement Reverse Complement Forward 1 18 0.071426 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: WBHHHHHMDATTGTTHDHDVHH TWAAWTTVTGAAAAAHWW---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Original Motif Reverse Complement Backward 3 18 0.0731314 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: DCATDBTGHGCATKMTTBRSWR --WWHTTTTTCABAAWTTWA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Original Motif Original Motif Backward 4 18 0.0755032 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH --WWHTTTTTCABAAWTTWA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Original Motif Original Motif Backward 5 18 0.078731 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH -WWHTTTTTCABAAWTTWA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondary Reverse Complement Original Motif Backward 2 18 0.0794414 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: VCTBHBVCTTGGWTACVVVVVDB ----TWAAWTTVTGAAAAAHWW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Original Motif Reverse Complement Backward 5 18 0.0796126 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH -WWHTTTTTCABAAWTTWA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Reverse Complement Original Motif Backward 2 18 0.0797884 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: DVTTVVCVYGGHGGYCHHDMYB ---TWAAWTTVTGAAAAAHWW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 54 Motif name: TFM12 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG ************************************************************************ Best Matches for Motif ID 54 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondary Reverse Complement Reverse Complement Backward 1 20 0.0528574 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK --KKKAGGDGGAKKMGBBGKMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Original Motif Original Motif Forward 1 20 0.0585594 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH CYYCBBCYYYTCCHCCTYYY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Reverse Complement Original Motif Backward 3 20 0.0625384 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB -KKKAGGDGGAKKMGBBGKMG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Reverse Complement Reverse Complement Backward 1 20 0.0639685 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: DCATDBTGHGCATKMTTBRSWR --KKKAGGDGGAKKMGBBGKMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Original Motif Reverse Complement Backward 3 20 0.0648037 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: DVMHHDHKGACCCTCCTSVCBH CYYCBBCYYYTCCHCCTYYY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Original Motif Reverse Complement Forward 1 20 0.0649332 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VHYTCCDWCCGCGTCMMTHWHV CYYCBBCYYYTCCHCCTYYY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Reverse Complement Original Motif Backward 1 20 0.0652647 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: GTVBDAATTGTVTGHGDDHKVB --KKKAGGDGGAKKMGBBGKMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Reverse Complement Forward 3 20 0.0703354 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB --KKKAGGDGGAKKMGBBGKMG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primary Reverse Complement Original Motif Forward 1 20 0.0706876 Species: Mus musculus Consensus sequence (original motif): HDGHHBHRGACCACCCGSVDVG Consensus sequence (reverse complement motif): CVHBSCGGGTGGTCMHVHHCDH Alignment: CVHBSCGGGTGGTCMHVHHCDH KKKAGGDGGAKKMGBBGKMG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondary Reverse Complement Reverse Complement Backward 2 20 0.0710664 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: BDBBVBVGTAWCCAAGVBHBAGB --KKKAGGDGGAKKMGBBGKMG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 55 Motif name: TFM13 Consensus sequence (original motif): ATKAAWTTTTRMAABAHHTW Consensus sequence (reverse complement motif): WAHHTVTTYKAAAAWTTRAT ************************************************************************ Best Matches for Motif ID 55 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Reverse Complement Reverse Complement Backward 2 20 0.0556257 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC -WAHHTVTTYKAAAAWTTRAT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondary Original Motif Reverse Complement Backward 2 20 0.0642682 Species: Mus musculus Consensus sequence (original motif): HBHDVBWGATHBTATCRVBHHH Consensus sequence (reverse complement motif): HHHBBMGATAVHATCWVVDHVH Alignment: HHHBBMGATAVHATCWVVDHVH -ATKAAWTTTTRMAABAHHTW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Reverse Complement Reverse Complement Forward 3 20 0.064945 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: WBHHHHHMDATTGTTHDHDVHH --WAHHTVTTYKAAAAWTTRAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Original Motif Reverse Complement Backward 3 20 0.0651681 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: HBHDVHDTCTTATCTHTDDHDV ATKAAWTTTTRMAABAHHTW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondary Original Motif Reverse Complement Backward 3 20 0.0670788 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: BDBBVBVGTAWCCAAGVBHBAGB -ATKAAWTTTTRMAABAHHTW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_primary Original Motif Original Motif Backward 3 20 0.070823 Species: Mus musculus Consensus sequence (original motif): HDTBHHCCHTAGCAACVVDHHHH Consensus sequence (reverse complement motif): HHHHDVVGTTGCTAHGGDHBAHH Alignment: HDTBHHCCHTAGCAACVVDHHHH -ATKAAWTTTTRMAABAHHTW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_primary Reverse Complement Reverse Complement Forward 1 20 0.0734735 Species: Mus musculus Consensus sequence (original motif): HADTBVADGATGCATCMTGMVHB Consensus sequence (reverse complement motif): VHVRCAYGATGCATCDTVVADTH Alignment: VHVRCAYGATGCATCDTVVADTH WAHHTVTTYKAAAAWTTRAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Original Motif Original Motif Backward 4 20 0.0743251 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH ATKAAWTTTTRMAABAHHTW--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Original Motif Original Motif Forward 4 19 0.567157 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: MWSMBAARRATGCDCABHATGD- ---ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00121 Hoxd10 Reverse Complement Original Motif Backward 2 17 1.54045 Species: Mus musculus Consensus sequence (original motif): VDKVYAATAAAATDDDH Consensus sequence (reverse complement motif): HDDDATTTTATTKVRDB Alignment: ---HDDDATTTTATTKVRDB WAHHTVTTYKAAAAWTTRAT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 56 Motif name: TFM11 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH ************************************************************************ Best Matches for Motif ID 56 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_primary Original Motif Original Motif Backward 2 23 0.0760601 Species: Mus musculus Consensus sequence (original motif): HDTBHHCCHTAGCAACVVDHHHH Consensus sequence (reverse complement motif): HHHHDVVGTTGCTAHGGDHBAHH Alignment: --HDTBHHCCHTAGCAACVVDHHHH HDWVAAAHAAAAAMAAAMWWWHBWA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Original Motif Original Motif Backward 3 23 0.0803516 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: --VYWVVHCRCCACMCACGAHSBHH HDWVAAAHAAAAAMAAAMWWWHBWA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_primary Original Motif Original Motif Forward 2 23 0.0808735 Species: Mus musculus Consensus sequence (original motif): HADTBVADGATGCATCMTGMVHB Consensus sequence (reverse complement motif): VHVRCAYGATGCATCDTVVADTH Alignment: HADTBVADGATGCATCMTGMVHB-- -HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Original Motif Original Motif Backward 3 23 0.0812213 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: --MHHHWHYTMCCHCCCACVAABVH HDWVAAAHAAAAAMAAAMWWWHBWA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondary Original Motif Reverse Complement Forward 1 23 0.0813067 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: BDBBVBVGTAWCCAAGVBHBAGB-- HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Reverse Complement Original Motif Forward 2 23 0.0869107 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH-- -TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_primary Reverse Complement Reverse Complement Forward 2 23 0.0877809 Species: Mus musculus Consensus sequence (original motif): DTVBDDRGACCACCCAGDWDGBH Consensus sequence (reverse complement motif): DBCDWHCTGGGTGGTCMDHBBAH Alignment: DBCDWHCTGGGTGGTCMDHBBAH-- -TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Reverse Complement Reverse Complement Backward 1 23 0.0879037 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: --ACHRBHDTCCACGTGYAHHBMHM TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Original Motif Forward 2 23 0.0891795 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: BADHBDHCGCCCMCGCAHHDBBV-- -HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primary Original Motif Original Motif Forward 1 23 0.0895093 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BBBDVVRGACCACCCAVGABBAB-- HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 06-19-2018 08:41:08 Runtime: 819.17 seconds MOTIFSIM is written by Ngoc Tam L. 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