**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 4 Number of top significant motifs: 10 Number of best matches: 10 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Motif tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # DREME_DM721.txt 16 1 MEME-ChIP_DM721.txt 11 2 PScanChIP_DM721.txt 37 3 RSAT_peak-motifs_DM721.txt 40 4 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ********************************************************************** Best Matches in Database for Each Motif (Highest to Lowest) ***************************************************************** Dataset #: 1 Motif ID: 1 Motif name: Motif 1 Original motif 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.628361 0.000000 0.000000 0.371639 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.717712 0.000000 0.000000 0.282288 Consensus sequence: AAAAWAAA Reserve complement motif 0.282288 0.000000 0.000000 0.717712 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.371639 0.000000 0.000000 0.628361 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: TTTWTTTT ************************************************************************ Best Matches for Motif ID 1 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_primary Reverse Complement Reverse Complement Forward 4 8 0.000000 Species: Mus musculus Original motif 0.323208 0.152915 0.185111 0.338766 0.428132 0.056109 0.099487 0.416272 0.659386 0.039965 0.035805 0.264843 0.647143 0.049206 0.078984 0.224667 0.208834 0.076592 0.071631 0.642943 0.341077 0.003865 0.649511 0.005547 0.016627 0.001866 0.001715 0.979792 0.952319 0.045294 0.000870 0.001516 0.988834 0.004620 0.000720 0.005826 0.989346 0.001005 0.006467 0.003182 0.001093 0.784230 0.001235 0.213442 0.991209 0.002017 0.001737 0.005037 0.801581 0.037084 0.023060 0.138274 0.528554 0.089350 0.107501 0.274595 0.208802 0.268646 0.368022 0.154530 0.280218 0.221367 0.340497 0.157918 0.146611 0.250725 0.293524 0.309140 Consensus sequence: DWAATRTAAACAAWVVB Reverse complement motif 0.309140 0.250725 0.293524 0.146611 0.280218 0.340497 0.221367 0.157918 0.208802 0.368022 0.268646 0.154530 0.274595 0.089350 0.107501 0.528554 0.138274 0.037084 0.023060 0.801581 0.005037 0.002017 0.001737 0.991209 0.001093 0.001235 0.784230 0.213442 0.003182 0.001005 0.006467 0.989346 0.005826 0.004620 0.000720 0.988834 0.001516 0.045294 0.000870 0.952319 0.979792 0.001866 0.001715 0.016627 0.341077 0.649511 0.003865 0.005547 0.642943 0.076592 0.071631 0.208834 0.224667 0.049206 0.078984 0.647143 0.264843 0.039965 0.035805 0.659386 0.416272 0.056109 0.099487 0.428132 0.338766 0.152915 0.185111 0.323208 Consensus sequence: VVVWTTGTTTAMATTWD Alignment: VVVWTTGTTTAMATTWD ---TTTWTTTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_primary Original Motif Original Motif Backward 4 8 0.002345 Species: Mus musculus Original motif 0.335487 0.205062 0.128957 0.330494 0.411635 0.179625 0.175701 0.233038 0.412976 0.128602 0.091890 0.366532 0.608396 0.079002 0.107142 0.205460 0.433474 0.035203 0.153143 0.378180 0.087552 0.005003 0.894586 0.012858 0.004459 0.038951 0.001109 0.955481 0.924470 0.068560 0.001165 0.005805 0.920483 0.070039 0.001674 0.007805 0.988335 0.001902 0.003155 0.006608 0.001527 0.656726 0.002699 0.339047 0.987505 0.001810 0.004336 0.006349 0.719584 0.065184 0.050384 0.164848 0.535389 0.099997 0.102849 0.261764 0.245215 0.272017 0.301499 0.181269 0.306107 0.209040 0.248687 0.236166 0.223744 0.278668 0.251931 0.245657 Consensus sequence: HHWAWGTAAAYAAAVDB Reverse complement motif 0.223744 0.251931 0.278668 0.245657 0.236166 0.209040 0.248687 0.306107 0.245215 0.301499 0.272017 0.181269 0.261764 0.099997 0.102849 0.535389 0.164848 0.065184 0.050384 0.719584 0.006349 0.001810 0.004336 0.987505 0.001527 0.002699 0.656726 0.339047 0.006608 0.001902 0.003155 0.988335 0.007805 0.070039 0.001674 0.920483 0.005805 0.068560 0.001165 0.924470 0.955481 0.038951 0.001109 0.004459 0.087552 0.894586 0.005003 0.012858 0.378180 0.035203 0.153143 0.433474 0.205460 0.079002 0.107142 0.608396 0.366532 0.128602 0.091890 0.412976 0.233038 0.179625 0.175701 0.411635 0.330494 0.205062 0.128957 0.335487 Consensus sequence: BDVTTTKTTTACWTWHH Alignment: HHWAWGTAAAYAAAVDB ------AAAAWAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_primary Reverse Complement Reverse Complement Forward 4 8 0.002631 Species: Mus musculus Original motif 0.273456 0.257473 0.208488 0.260583 0.338566 0.133379 0.306363 0.221693 0.475488 0.192852 0.156858 0.174803 0.506619 0.132646 0.170373 0.190362 0.349042 0.127275 0.325924 0.197759 0.303850 0.013619 0.678034 0.004497 0.014136 0.015691 0.003073 0.967100 0.913373 0.082928 0.001910 0.001789 0.956294 0.017745 0.000584 0.025378 0.987796 0.001685 0.004159 0.006360 0.002288 0.814764 0.001427 0.181521 0.986707 0.002688 0.003346 0.007259 0.787378 0.065481 0.057961 0.089180 0.572982 0.089910 0.066184 0.270924 0.224167 0.339979 0.258886 0.176968 0.268414 0.272007 0.239541 0.220038 0.241771 0.394748 0.174273 0.189208 Consensus sequence: HDHADGTAAACAAAVVH Reverse complement motif 0.241771 0.174273 0.394748 0.189208 0.268414 0.239541 0.272007 0.220038 0.224167 0.258886 0.339979 0.176968 0.270924 0.089910 0.066184 0.572982 0.089180 0.065481 0.057961 0.787378 0.007259 0.002688 0.003346 0.986707 0.002288 0.001427 0.814764 0.181521 0.006360 0.001685 0.004159 0.987796 0.025378 0.017745 0.000584 0.956294 0.001789 0.082928 0.001910 0.913373 0.967100 0.015691 0.003073 0.014136 0.303850 0.678034 0.013619 0.004497 0.197759 0.127275 0.325924 0.349042 0.190362 0.132646 0.170373 0.506619 0.174803 0.192852 0.156858 0.475488 0.221693 0.133379 0.306363 0.338566 0.260583 0.257473 0.208488 0.273456 Consensus sequence: DVVTTTGTTTACDTHDH Alignment: DVVTTTGTTTACDTHDH ---TTTWTTTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00134 Hoxb13 Reverse Complement Reverse Complement Forward 4 8 0.002848 Species: Mus musculus Original motif 0.376100 0.272625 0.202253 0.149021 0.479072 0.116315 0.274952 0.129661 0.297412 0.328646 0.182054 0.191889 0.052067 0.771717 0.088083 0.088133 0.018222 0.666056 0.006952 0.308770 0.755568 0.122362 0.001339 0.120731 0.915413 0.001023 0.052340 0.031225 0.002612 0.028396 0.000695 0.968297 0.831092 0.001851 0.005615 0.161442 0.927869 0.001839 0.001169 0.069123 0.967747 0.009603 0.002871 0.019778 0.843186 0.073812 0.055868 0.027134 0.371084 0.143031 0.086222 0.399662 0.264976 0.212885 0.118960 0.403179 0.215633 0.345186 0.105518 0.333663 0.221910 0.297212 0.329310 0.151568 Consensus sequence: VRHCCAATAAAAWHHV Reverse complement motif 0.221910 0.329310 0.297212 0.151568 0.215633 0.105518 0.345186 0.333663 0.403179 0.212885 0.118960 0.264976 0.399662 0.143031 0.086222 0.371084 0.027134 0.073812 0.055868 0.843186 0.019778 0.009603 0.002871 0.967747 0.069123 0.001839 0.001169 0.927869 0.161442 0.001851 0.005615 0.831092 0.968297 0.028396 0.000695 0.002612 0.031225 0.001023 0.052340 0.915413 0.120731 0.122362 0.001339 0.755568 0.018222 0.006952 0.666056 0.308770 0.052067 0.088083 0.771717 0.088133 0.297412 0.182054 0.328646 0.191889 0.129661 0.116315 0.274952 0.479072 0.149021 0.272625 0.202253 0.376100 Consensus sequence: VDHWTTTTATTGGDKB Alignment: VDHWTTTTATTGGDKB ---TTTWTTTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_secondary Reverse Complement Reverse Complement Forward 5 8 0.002904 Species: Mus musculus Original motif 0.162968 0.284828 0.440984 0.111220 0.151392 0.200635 0.205316 0.442657 0.267215 0.083669 0.192498 0.456618 0.332771 0.180711 0.200027 0.286491 0.509370 0.102954 0.242569 0.145107 0.666262 0.077309 0.154466 0.101962 0.737968 0.113335 0.100401 0.048296 0.658878 0.141580 0.134033 0.065510 0.766115 0.094051 0.069763 0.070072 0.755621 0.088491 0.044802 0.111086 0.749083 0.135917 0.047510 0.067490 0.663231 0.176795 0.028134 0.131839 0.553358 0.277659 0.038655 0.130328 0.392578 0.314083 0.209844 0.083495 0.198462 0.237132 0.239466 0.324940 0.275121 0.210087 0.194779 0.320013 0.287748 0.277395 0.142704 0.292154 Consensus sequence: VBDDAAAAAAAAMVBHH Reverse complement motif 0.292154 0.277395 0.142704 0.287748 0.320013 0.210087 0.194779 0.275121 0.324940 0.237132 0.239466 0.198462 0.083495 0.314083 0.209844 0.392578 0.130328 0.277659 0.038655 0.553358 0.131839 0.176795 0.028134 0.663231 0.067490 0.135917 0.047510 0.749083 0.111086 0.088491 0.044802 0.755621 0.070072 0.094051 0.069763 0.766115 0.065510 0.141580 0.134033 0.658878 0.048296 0.113335 0.100401 0.737968 0.101962 0.077309 0.154466 0.666262 0.145107 0.102954 0.242569 0.509370 0.286491 0.180711 0.200027 0.332771 0.456618 0.083669 0.192498 0.267215 0.442657 0.200635 0.205316 0.151392 0.162968 0.440984 0.284828 0.111220 Consensus sequence: HHVBYTTTTTTTTDDVV Alignment: HHVBYTTTTTTTTDDVV ----TTTWTTTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_primary Reverse Complement Reverse Complement Backward 7 8 0.004134 Species: Mus musculus Original motif 0.338172 0.192194 0.207817 0.261817 0.407924 0.117261 0.278236 0.196580 0.595570 0.070480 0.119221 0.214729 0.710845 0.038748 0.052600 0.197807 0.124647 0.116138 0.178053 0.581162 0.201602 0.005514 0.792110 0.000774 0.024590 0.004193 0.001331 0.969886 0.919465 0.077871 0.000760 0.001904 0.972342 0.010395 0.000580 0.016683 0.991045 0.001495 0.003585 0.003875 0.001358 0.885197 0.000980 0.112465 0.990318 0.001846 0.002968 0.004867 0.804563 0.063147 0.023496 0.108795 0.564824 0.087976 0.102865 0.244336 0.269947 0.300278 0.285008 0.144767 0.337905 0.220102 0.253694 0.188299 0.153781 0.274135 0.318343 0.253741 Consensus sequence: DDAATGTAAACAAAVVB Reverse complement motif 0.153781 0.318343 0.274135 0.253741 0.188299 0.220102 0.253694 0.337905 0.269947 0.285008 0.300278 0.144767 0.244336 0.087976 0.102865 0.564824 0.108795 0.063147 0.023496 0.804563 0.004867 0.001846 0.002968 0.990318 0.001358 0.000980 0.885197 0.112465 0.003875 0.001495 0.003585 0.991045 0.016683 0.010395 0.000580 0.972342 0.001904 0.077871 0.000760 0.919465 0.969886 0.004193 0.001331 0.024590 0.201602 0.792110 0.005514 0.000774 0.581162 0.116138 0.178053 0.124647 0.197807 0.038748 0.052600 0.710845 0.214729 0.070480 0.119221 0.595570 0.196580 0.117261 0.278236 0.407924 0.261817 0.192194 0.207817 0.338172 Consensus sequence: BBVTTTGTTTACATTDD Alignment: BBVTTTGTTTACATTDD ---TTTWTTTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00180 Hoxd13 Original Motif Original Motif Forward 6 8 0.005213 Species: Mus musculus Original motif 0.279189 0.316791 0.190404 0.213616 0.297705 0.175638 0.191020 0.335637 0.333485 0.203858 0.174034 0.288623 0.046444 0.540349 0.083237 0.329969 0.016780 0.648667 0.003870 0.330682 0.679959 0.116873 0.002745 0.200422 0.936496 0.002013 0.026876 0.034615 0.004741 0.008734 0.003861 0.982665 0.904624 0.000869 0.005345 0.089162 0.967883 0.002295 0.001003 0.028819 0.980087 0.004768 0.002887 0.012258 0.898523 0.041633 0.022776 0.037069 0.246903 0.292446 0.069240 0.391411 0.192528 0.300908 0.105655 0.400908 0.247610 0.343317 0.190760 0.218313 0.246702 0.253595 0.176298 0.323404 Consensus sequence: HDHYYAATAAAAHHHH Reverse complement motif 0.323404 0.253595 0.176298 0.246702 0.247610 0.190760 0.343317 0.218313 0.400908 0.300908 0.105655 0.192528 0.391411 0.292446 0.069240 0.246903 0.037069 0.041633 0.022776 0.898523 0.012258 0.004768 0.002887 0.980087 0.028819 0.002295 0.001003 0.967883 0.089162 0.000869 0.005345 0.904624 0.982665 0.008734 0.003861 0.004741 0.034615 0.002013 0.026876 0.936496 0.200422 0.116873 0.002745 0.679959 0.016780 0.003870 0.648667 0.330682 0.046444 0.083237 0.540349 0.329969 0.288623 0.203858 0.174034 0.333485 0.335637 0.175638 0.191020 0.297705 0.279189 0.190404 0.316791 0.213616 Consensus sequence: HDHHTTTTATTKKHDD Alignment: HDHYYAATAAAAHHHH -----AAAAWAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00090 Elf3_secondary Original Motif Original Motif Backward 5 8 0.005698 Species: Mus musculus Original motif 0.155083 0.152982 0.490906 0.201030 0.123195 0.312681 0.220770 0.343354 0.110252 0.131358 0.153983 0.604406 0.216489 0.490160 0.101348 0.192003 0.396130 0.292429 0.103252 0.208189 0.634770 0.070898 0.070668 0.223664 0.667102 0.099915 0.067576 0.165407 0.625495 0.095579 0.039353 0.239573 0.717478 0.093228 0.024737 0.164558 0.729965 0.048628 0.024557 0.196850 0.670909 0.118718 0.043692 0.166681 0.689441 0.050145 0.038829 0.221584 0.506735 0.159498 0.095635 0.238132 0.406093 0.298915 0.149902 0.145090 0.193913 0.282078 0.096706 0.427303 0.272324 0.154790 0.262469 0.310417 0.224484 0.458724 0.060144 0.256647 Consensus sequence: DBTHHAAAAAAAAVHDH Reverse complement motif 0.224484 0.060144 0.458724 0.256647 0.310417 0.154790 0.262469 0.272324 0.427303 0.282078 0.096706 0.193913 0.145090 0.298915 0.149902 0.406093 0.238132 0.159498 0.095635 0.506735 0.221584 0.050145 0.038829 0.689441 0.166681 0.118718 0.043692 0.670909 0.196850 0.048628 0.024557 0.729965 0.164558 0.093228 0.024737 0.717478 0.239573 0.095579 0.039353 0.625495 0.165407 0.099915 0.067576 0.667102 0.223664 0.070898 0.070668 0.634770 0.208189 0.292429 0.103252 0.396130 0.216489 0.101348 0.490160 0.192003 0.604406 0.131358 0.153983 0.110252 0.343354 0.312681 0.220770 0.123195 0.155083 0.490906 0.152982 0.201030 Consensus sequence: DDHBTTTTTTTTHDAVH Alignment: DBTHHAAAAAAAAVHDH -----AAAAWAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Original Motif Original Motif Backward 7 8 0.006162 Species: Mus musculus Original motif 0.351812 0.238467 0.143954 0.265768 0.195246 0.235838 0.281473 0.287443 0.349478 0.172616 0.210739 0.267167 0.484061 0.110438 0.173131 0.232370 0.276692 0.070713 0.479604 0.172991 0.859124 0.044167 0.083951 0.012758 0.975608 0.002029 0.002285 0.020079 0.006422 0.978485 0.007124 0.007969 0.987489 0.003025 0.002868 0.006617 0.987739 0.005463 0.002730 0.004067 0.693013 0.004067 0.002445 0.300475 0.189100 0.003677 0.801408 0.005814 0.352090 0.072517 0.567737 0.007656 0.542316 0.176545 0.192768 0.088371 0.196382 0.304176 0.205985 0.293457 0.289415 0.201358 0.182937 0.326290 0.385801 0.216362 0.152363 0.245475 Consensus sequence: HBDDRAACAAAGRABHH Reverse complement motif 0.245475 0.216362 0.152363 0.385801 0.326290 0.201358 0.182937 0.289415 0.196382 0.205985 0.304176 0.293457 0.088371 0.176545 0.192768 0.542316 0.352090 0.567737 0.072517 0.007656 0.189100 0.801408 0.003677 0.005814 0.300475 0.004067 0.002445 0.693013 0.004067 0.005463 0.002730 0.987739 0.006617 0.003025 0.002868 0.987489 0.006422 0.007124 0.978485 0.007969 0.020079 0.002029 0.002285 0.975608 0.012758 0.044167 0.083951 0.859124 0.276692 0.479604 0.070713 0.172991 0.232370 0.110438 0.173131 0.484061 0.267167 0.172616 0.210739 0.349478 0.287443 0.235838 0.281473 0.195246 0.265768 0.238467 0.143954 0.351812 Consensus sequence: HHBTMCTTTGTTMDDVH Alignment: HBDDRAACAAAGRABHH ---AAAAWAAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_secondary Original Motif Original Motif Backward 4 8 0.008449 Species: Mus musculus Original motif 0.560226 0.121586 0.083231 0.234957 0.318077 0.149137 0.179955 0.352831 0.482497 0.118420 0.173594 0.225488 0.200166 0.160901 0.191493 0.447440 0.033691 0.569719 0.018901 0.377690 0.638020 0.166545 0.021254 0.174181 0.573953 0.105729 0.009308 0.311010 0.890518 0.053364 0.013424 0.042694 0.910758 0.028166 0.032648 0.028428 0.013358 0.738707 0.023981 0.223953 0.911783 0.018754 0.031898 0.037564 0.702891 0.068940 0.076823 0.151346 0.445507 0.320769 0.057216 0.176507 0.587798 0.129586 0.140592 0.142024 0.258981 0.330939 0.167334 0.242747 0.362022 0.333796 0.145861 0.158320 Consensus sequence: ADDDYAWAACAAMAHH Reverse complement motif 0.158320 0.333796 0.145861 0.362022 0.258981 0.167334 0.330939 0.242747 0.142024 0.129586 0.140592 0.587798 0.176507 0.320769 0.057216 0.445507 0.151346 0.068940 0.076823 0.702891 0.037564 0.018754 0.031898 0.911783 0.013358 0.023981 0.738707 0.223953 0.028428 0.028166 0.032648 0.910758 0.042694 0.053364 0.013424 0.890518 0.311010 0.105729 0.009308 0.573953 0.174181 0.166545 0.021254 0.638020 0.033691 0.018901 0.569719 0.377690 0.447440 0.160901 0.191493 0.200166 0.225488 0.118420 0.173594 0.482497 0.352831 0.149137 0.179955 0.318077 0.234957 0.121586 0.083231 0.560226 Consensus sequence: HDTYTTGTTWTKDDDT Alignment: ADDDYAWAACAAMAHH -----AAAAWAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 2 Motif name: Motif 2 Original motif 0.273819 0.583022 0.000000 0.143159 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.294595 0.705405 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: CACACACA Reserve complement motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.294595 0.000000 0.705405 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.273819 0.000000 0.583022 0.143159 Consensus sequence: TGTGTGTG ************************************************************************ Best Matches for Motif ID 2 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_second Reverse Complement Reverse Complement Backward 6 8 0.000000 Species: Mus musculus Original motif 0.360404 0.193218 0.248888 0.197490 0.286498 0.224597 0.426555 0.062349 0.347032 0.440548 0.033161 0.179259 0.337062 0.193658 0.385751 0.083529 0.108793 0.005723 0.878300 0.007184 0.015151 0.973406 0.009324 0.002118 0.972117 0.003915 0.019783 0.004185 0.010144 0.980912 0.003106 0.005839 0.974864 0.007532 0.015914 0.001691 0.012441 0.939195 0.029256 0.019108 0.759620 0.106164 0.073819 0.060397 0.157234 0.818234 0.007449 0.017083 0.050076 0.063608 0.505171 0.381144 0.131903 0.538163 0.124608 0.205325 0.367623 0.286526 0.240931 0.104919 0.357798 0.317606 0.097711 0.226885 Consensus sequence: DVMVGCACACACKCVH Reverse complement motif 0.226885 0.317606 0.097711 0.357798 0.104919 0.286526 0.240931 0.367623 0.131903 0.124608 0.538163 0.205325 0.050076 0.505171 0.063608 0.381144 0.157234 0.007449 0.818234 0.017083 0.060397 0.106164 0.073819 0.759620 0.012441 0.029256 0.939195 0.019108 0.001691 0.007532 0.015914 0.974864 0.010144 0.003106 0.980912 0.005839 0.004185 0.003915 0.019783 0.972117 0.015151 0.009324 0.973406 0.002118 0.108793 0.878300 0.005723 0.007184 0.337062 0.385751 0.193658 0.083529 0.347032 0.033161 0.440548 0.179259 0.286498 0.426555 0.224597 0.062349 0.197490 0.193218 0.248888 0.360404 Consensus sequence: HBGYGTGTGTGCVRVD Alignment: HBGYGTGTGTGCVRVD ---TGTGTGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00026 Zscan4_secondary Reverse Complement Reverse Complement Forward 6 8 0.017864 Species: Mus musculus Original motif 0.275231 0.387763 0.112851 0.224155 0.269193 0.327669 0.360934 0.042204 0.439403 0.233641 0.022359 0.304596 0.409796 0.139856 0.390450 0.059899 0.038409 0.011231 0.936209 0.014150 0.067382 0.909014 0.021244 0.002359 0.962897 0.009563 0.009687 0.017854 0.043757 0.937596 0.007648 0.010999 0.970698 0.005379 0.016825 0.007098 0.066033 0.636556 0.043955 0.253456 0.797406 0.066726 0.011988 0.123879 0.774632 0.121694 0.017773 0.085901 0.324017 0.235408 0.213365 0.227210 0.365796 0.192247 0.134547 0.307410 0.299601 0.246867 0.098395 0.355137 0.328229 0.242048 0.251143 0.178579 Consensus sequence: HVHRGCACACAAHHHV Reverse complement motif 0.178579 0.242048 0.251143 0.328229 0.355137 0.246867 0.098395 0.299601 0.307410 0.192247 0.134547 0.365796 0.227210 0.235408 0.213365 0.324017 0.085901 0.121694 0.017773 0.774632 0.123879 0.066726 0.011988 0.797406 0.066033 0.043955 0.636556 0.253456 0.007098 0.005379 0.016825 0.970698 0.043757 0.007648 0.937596 0.010999 0.017854 0.009563 0.009687 0.962897 0.067382 0.021244 0.909014 0.002359 0.038409 0.936209 0.011231 0.014150 0.059899 0.139856 0.390450 0.409796 0.304596 0.233641 0.022359 0.439403 0.269193 0.360934 0.327669 0.042204 0.275231 0.112851 0.387763 0.224155 Consensus sequence: BHHHTTGTGTGCKHVD Alignment: BHHHTTGTGTGCKHVD -----TGTGTGTG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00004 Sox14_secondary Reverse Complement Reverse Complement Forward 8 8 0.029159 Species: Mus musculus Original motif 0.191264 0.345487 0.212142 0.251106 0.105033 0.130838 0.338939 0.425191 0.126539 0.333031 0.233364 0.307066 0.641901 0.114039 0.195933 0.048127 0.153349 0.532437 0.272427 0.041786 0.934680 0.009395 0.019668 0.036257 0.013611 0.927298 0.037729 0.021361 0.964293 0.018416 0.006724 0.010568 0.962181 0.018004 0.014592 0.005223 0.229593 0.016301 0.007632 0.746474 0.268456 0.030092 0.519349 0.182102 0.201484 0.107350 0.588833 0.102334 0.253726 0.259057 0.242924 0.244293 0.168663 0.203061 0.347898 0.280378 0.175853 0.339716 0.301724 0.182707 Consensus sequence: BKBASACAATRGHBB Reverse complement motif 0.175853 0.301724 0.339716 0.182707 0.168663 0.347898 0.203061 0.280378 0.253726 0.242924 0.259057 0.244293 0.201484 0.588833 0.107350 0.102334 0.268456 0.519349 0.030092 0.182102 0.746474 0.016301 0.007632 0.229593 0.005223 0.018004 0.014592 0.962181 0.010568 0.018416 0.006724 0.964293 0.013611 0.037729 0.927298 0.021361 0.036257 0.009395 0.019668 0.934680 0.153349 0.272427 0.532437 0.041786 0.048127 0.114039 0.195933 0.641901 0.126539 0.233364 0.333031 0.307066 0.425191 0.130838 0.338939 0.105033 0.191264 0.212142 0.345487 0.251106 Consensus sequence: BBDCMATTGTSTBRB Alignment: BBDCMATTGTSTBRB -------TGTGTGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_primary Reverse Complement Reverse Complement Backward 9 8 0.031667 Species: Mus musculus Original motif 0.248614 0.321010 0.201723 0.228654 0.332381 0.190810 0.184854 0.291955 0.253802 0.119338 0.331394 0.295466 0.577827 0.100884 0.130066 0.191223 0.180374 0.011174 0.042942 0.765510 0.009131 0.024996 0.962422 0.003450 0.003308 0.034731 0.002930 0.959032 0.063907 0.001099 0.933714 0.001280 0.001280 0.933714 0.001099 0.063907 0.959032 0.002930 0.034731 0.003308 0.003450 0.962422 0.024996 0.009131 0.765510 0.042942 0.011174 0.180374 0.026456 0.256356 0.130672 0.586516 0.589555 0.285548 0.036864 0.088034 0.265828 0.529813 0.031915 0.172445 0.209015 0.104817 0.374275 0.311892 0.224283 0.292805 0.144270 0.338642 Consensus sequence: HHDATGTGCACATAMDH Reverse complement motif 0.338642 0.292805 0.144270 0.224283 0.209015 0.374275 0.104817 0.311892 0.265828 0.031915 0.529813 0.172445 0.088034 0.285548 0.036864 0.589555 0.586516 0.256356 0.130672 0.026456 0.180374 0.042942 0.011174 0.765510 0.003450 0.024996 0.962422 0.009131 0.003308 0.002930 0.034731 0.959032 0.001280 0.001099 0.933714 0.063907 0.063907 0.933714 0.001099 0.001280 0.959032 0.034731 0.002930 0.003308 0.009131 0.962422 0.024996 0.003450 0.765510 0.011174 0.042942 0.180374 0.191223 0.100884 0.130066 0.577827 0.253802 0.331394 0.119338 0.295466 0.291955 0.190810 0.184854 0.332381 0.248614 0.201723 0.321010 0.228654 Consensus sequence: HHRTATGTGCACATHHD Alignment: HHRTATGTGCACATHHD -TGTGTGTG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00026 Zscan4_primary Original Motif Original Motif Backward 2 8 0.032766 Species: Mus musculus Original motif 0.203927 0.157260 0.307071 0.331743 0.360341 0.265216 0.147327 0.227115 0.251195 0.298806 0.241051 0.208949 0.487186 0.122472 0.214362 0.175980 0.122838 0.051062 0.055773 0.770327 0.020467 0.009992 0.965816 0.003725 0.005887 0.026663 0.006808 0.960643 0.030656 0.002167 0.965099 0.002078 0.002078 0.965099 0.002167 0.030656 0.960643 0.006808 0.026663 0.005887 0.003725 0.965816 0.009992 0.020467 0.770327 0.055773 0.051062 0.122838 0.044808 0.382307 0.042920 0.529965 0.751320 0.047417 0.044482 0.156781 0.362742 0.228898 0.085373 0.322987 0.436635 0.111479 0.217284 0.234601 0.303930 0.285374 0.195872 0.214824 Consensus sequence: DHVDTGTGCACAYAHDH Reverse complement motif 0.214824 0.285374 0.195872 0.303930 0.234601 0.111479 0.217284 0.436635 0.322987 0.228898 0.085373 0.362742 0.156781 0.047417 0.044482 0.751320 0.529965 0.382307 0.042920 0.044808 0.122838 0.055773 0.051062 0.770327 0.003725 0.009992 0.965816 0.020467 0.005887 0.006808 0.026663 0.960643 0.002078 0.002167 0.965099 0.030656 0.030656 0.965099 0.002167 0.002078 0.960643 0.026663 0.006808 0.005887 0.020467 0.965816 0.009992 0.003725 0.770327 0.051062 0.055773 0.122838 0.175980 0.122472 0.214362 0.487186 0.251195 0.241051 0.298806 0.208949 0.227115 0.265216 0.147327 0.360341 0.331743 0.157260 0.307071 0.203927 Consensus sequence: HDHTMTGTGCACADVHD Alignment: DHVDTGTGCACAYAHDH --------CACACACA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_primary Reverse Complement Reverse Complement Backward 5 8 0.032990 Species: Mus musculus Original motif 0.282316 0.413385 0.114930 0.189369 0.341654 0.135011 0.267943 0.255392 0.399523 0.173081 0.168845 0.258551 0.365086 0.196360 0.211856 0.226699 0.243321 0.177839 0.224206 0.354635 0.029873 0.808479 0.036309 0.125339 0.004945 0.815465 0.040635 0.138955 0.934557 0.058944 0.005027 0.001471 0.005099 0.003998 0.986148 0.004755 0.969304 0.020594 0.001929 0.008173 0.008189 0.984816 0.004199 0.002795 0.669579 0.012182 0.282153 0.036085 0.130511 0.171241 0.334041 0.364207 0.198982 0.289660 0.252392 0.258966 0.423172 0.190978 0.164411 0.221440 0.213519 0.287388 0.294414 0.204679 0.371956 0.285061 0.150191 0.192792 Consensus sequence: HDHDDCCAGACABBHVH Reverse complement motif 0.192792 0.285061 0.150191 0.371956 0.213519 0.294414 0.287388 0.204679 0.221440 0.190978 0.164411 0.423172 0.198982 0.252392 0.289660 0.258966 0.364207 0.171241 0.334041 0.130511 0.036085 0.012182 0.282153 0.669579 0.008189 0.004199 0.984816 0.002795 0.008173 0.020594 0.001929 0.969304 0.005099 0.986148 0.003998 0.004755 0.001471 0.058944 0.005027 0.934557 0.004945 0.040635 0.815465 0.138955 0.029873 0.036309 0.808479 0.125339 0.354635 0.177839 0.224206 0.243321 0.226699 0.196360 0.211856 0.365086 0.258551 0.173081 0.168845 0.399523 0.255392 0.135011 0.267943 0.341654 0.282316 0.114930 0.413385 0.189369 Consensus sequence: HVHBVTGTCTGGDDHDD Alignment: HVHBVTGTCTGGDDHDD -----TGTGTGTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00041 Foxj1_primary Original Motif Original Motif Backward 7 8 0.036109 Species: Mus musculus Original motif 0.446042 0.209997 0.124191 0.219770 0.271534 0.218131 0.245258 0.265077 0.368646 0.184693 0.168482 0.278180 0.348384 0.034204 0.583335 0.034077 0.040365 0.085618 0.013162 0.860855 0.824790 0.156631 0.004063 0.014515 0.835134 0.069381 0.003505 0.091980 0.967572 0.009280 0.006259 0.016890 0.009507 0.909577 0.004492 0.076424 0.947956 0.006994 0.008177 0.036873 0.599204 0.170666 0.065622 0.164508 0.708795 0.035865 0.070557 0.184782 0.303191 0.287145 0.184748 0.224917 0.285550 0.184167 0.248662 0.281621 0.235315 0.210836 0.254428 0.299421 0.220038 0.158539 0.286552 0.334871 Consensus sequence: HDHRTAAACAAAHDDD Reverse complement motif 0.334871 0.158539 0.286552 0.220038 0.299421 0.210836 0.254428 0.235315 0.281621 0.184167 0.248662 0.285550 0.224917 0.287145 0.184748 0.303191 0.184782 0.035865 0.070557 0.708795 0.164508 0.170666 0.065622 0.599204 0.036873 0.006994 0.008177 0.947956 0.009507 0.004492 0.909577 0.076424 0.016890 0.009280 0.006259 0.967572 0.091980 0.069381 0.003505 0.835134 0.014515 0.156631 0.004063 0.824790 0.860855 0.085618 0.013162 0.040365 0.348384 0.583335 0.034204 0.034077 0.278180 0.184693 0.168482 0.368646 0.265077 0.218131 0.245258 0.271534 0.219770 0.209997 0.124191 0.446042 Consensus sequence: DDDHTTTGTTTAMHDH Alignment: HDHRTAAACAAAHDDD --CACACACA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00101 Sox12_secondary Reverse Complement Reverse Complement Forward 6 8 0.039766 Species: Mus musculus Original motif 0.378898 0.318901 0.205859 0.096341 0.352524 0.321236 0.224504 0.101736 0.323551 0.182056 0.210897 0.283496 0.135539 0.325230 0.208031 0.331200 0.663106 0.055471 0.154459 0.126963 0.051748 0.292567 0.537307 0.118378 0.886489 0.042361 0.035742 0.035408 0.043647 0.688744 0.094358 0.173252 0.882052 0.039818 0.018899 0.059231 0.864171 0.036011 0.068363 0.031455 0.790158 0.046868 0.041594 0.121379 0.087447 0.143905 0.707798 0.060849 0.295919 0.132479 0.485703 0.085899 0.653156 0.133004 0.110012 0.103828 0.351764 0.131771 0.217730 0.298736 0.203977 0.196773 0.099958 0.499292 Consensus sequence: VVDBASACAAAGRADH Reverse complement motif 0.499292 0.196773 0.099958 0.203977 0.298736 0.131771 0.217730 0.351764 0.103828 0.133004 0.110012 0.653156 0.295919 0.485703 0.132479 0.085899 0.087447 0.707798 0.143905 0.060849 0.121379 0.046868 0.041594 0.790158 0.031455 0.036011 0.068363 0.864171 0.059231 0.039818 0.018899 0.882052 0.043647 0.094358 0.688744 0.173252 0.035408 0.042361 0.035742 0.886489 0.051748 0.537307 0.292567 0.118378 0.126963 0.055471 0.154459 0.663106 0.331200 0.325230 0.208031 0.135539 0.283496 0.182056 0.210897 0.323551 0.101736 0.321236 0.224504 0.352524 0.096341 0.318901 0.205859 0.378898 Consensus sequence: HDTMCTTTGTSTVDBB Alignment: HDTMCTTTGTSTVDBB -----TGTGTGTG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_primary Original Motif Original Motif Forward 5 8 0.041445 Species: Mus musculus Original motif 0.273456 0.257473 0.208488 0.260583 0.338566 0.133379 0.306363 0.221693 0.475488 0.192852 0.156858 0.174803 0.506619 0.132646 0.170373 0.190362 0.349042 0.127275 0.325924 0.197759 0.303850 0.013619 0.678034 0.004497 0.014136 0.015691 0.003073 0.967100 0.913373 0.082928 0.001910 0.001789 0.956294 0.017745 0.000584 0.025378 0.987796 0.001685 0.004159 0.006360 0.002288 0.814764 0.001427 0.181521 0.986707 0.002688 0.003346 0.007259 0.787378 0.065481 0.057961 0.089180 0.572982 0.089910 0.066184 0.270924 0.224167 0.339979 0.258886 0.176968 0.268414 0.272007 0.239541 0.220038 0.241771 0.394748 0.174273 0.189208 Consensus sequence: HDHADGTAAACAAAVVH Reverse complement motif 0.241771 0.174273 0.394748 0.189208 0.268414 0.239541 0.272007 0.220038 0.224167 0.258886 0.339979 0.176968 0.270924 0.089910 0.066184 0.572982 0.089180 0.065481 0.057961 0.787378 0.007259 0.002688 0.003346 0.986707 0.002288 0.001427 0.814764 0.181521 0.006360 0.001685 0.004159 0.987796 0.025378 0.017745 0.000584 0.956294 0.001789 0.082928 0.001910 0.913373 0.967100 0.015691 0.003073 0.014136 0.303850 0.678034 0.013619 0.004497 0.197759 0.127275 0.325924 0.349042 0.190362 0.132646 0.170373 0.506619 0.174803 0.192852 0.156858 0.475488 0.221693 0.133379 0.306363 0.338566 0.260583 0.257473 0.208488 0.273456 Consensus sequence: DVVTTTGTTTACDTHDH Alignment: HDHADGTAAACAAAVVH ----CACACACA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00070 Gcm1_primary Original Motif Original Motif Forward 4 8 0.042077 Species: Mus musculus Original motif 0.251681 0.208273 0.178525 0.361520 0.323865 0.334303 0.205542 0.136289 0.308084 0.277004 0.326203 0.088709 0.280609 0.171416 0.168918 0.379057 0.734441 0.031257 0.211473 0.022829 0.006187 0.990281 0.001052 0.002480 0.005819 0.990856 0.001498 0.001826 0.043838 0.936502 0.001550 0.018110 0.022607 0.058037 0.901005 0.018350 0.000424 0.787011 0.026547 0.186017 0.980774 0.002884 0.011288 0.005054 0.009100 0.110310 0.067399 0.813192 0.247510 0.310539 0.250093 0.191858 0.279511 0.211998 0.250717 0.257774 0.264451 0.270002 0.142606 0.322941 0.227607 0.212076 0.267214 0.293102 Consensus sequence: HVVHACCCGCATVDHD Reverse complement motif 0.293102 0.212076 0.267214 0.227607 0.322941 0.270002 0.142606 0.264451 0.257774 0.211998 0.250717 0.279511 0.247510 0.250093 0.310539 0.191858 0.813192 0.110310 0.067399 0.009100 0.005054 0.002884 0.011288 0.980774 0.000424 0.026547 0.787011 0.186017 0.022607 0.901005 0.058037 0.018350 0.043838 0.001550 0.936502 0.018110 0.005819 0.001498 0.990856 0.001826 0.006187 0.001052 0.990281 0.002480 0.022829 0.031257 0.211473 0.734441 0.379057 0.171416 0.168918 0.280609 0.308084 0.326203 0.277004 0.088709 0.323865 0.205542 0.334303 0.136289 0.361520 0.208273 0.178525 0.251681 Consensus sequence: DHDVATGCGGGTHVVH Alignment: HVVHACCCGCATVDHD ---CACACACA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 3 Motif name: Motif 3 Original motif 1.000000 0.000000 0.000000 0.000000 0.664359 0.000000 0.000000 0.335641 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.445065 0.344573 0.000000 0.210362 1.000000 0.000000 0.000000 0.000000 Consensus sequence: AWATAMA Reserve complement motif 0.000000 0.000000 0.000000 1.000000 0.210362 0.344573 0.000000 0.445065 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.335641 0.000000 0.000000 0.664359 0.000000 0.000000 0.000000 1.000000 Consensus sequence: TYTATWT ************************************************************************ Best Matches for Motif ID 3 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00180 Hoxd13 Reverse Complement Reverse Complement Backward 5 7 0.000000 Species: Mus musculus Original motif 0.279189 0.316791 0.190404 0.213616 0.297705 0.175638 0.191020 0.335637 0.333485 0.203858 0.174034 0.288623 0.046444 0.540349 0.083237 0.329969 0.016780 0.648667 0.003870 0.330682 0.679959 0.116873 0.002745 0.200422 0.936496 0.002013 0.026876 0.034615 0.004741 0.008734 0.003861 0.982665 0.904624 0.000869 0.005345 0.089162 0.967883 0.002295 0.001003 0.028819 0.980087 0.004768 0.002887 0.012258 0.898523 0.041633 0.022776 0.037069 0.246903 0.292446 0.069240 0.391411 0.192528 0.300908 0.105655 0.400908 0.247610 0.343317 0.190760 0.218313 0.246702 0.253595 0.176298 0.323404 Consensus sequence: HDHYYAATAAAAHHHH Reverse complement motif 0.323404 0.253595 0.176298 0.246702 0.247610 0.190760 0.343317 0.218313 0.400908 0.300908 0.105655 0.192528 0.391411 0.292446 0.069240 0.246903 0.037069 0.041633 0.022776 0.898523 0.012258 0.004768 0.002887 0.980087 0.028819 0.002295 0.001003 0.967883 0.089162 0.000869 0.005345 0.904624 0.982665 0.008734 0.003861 0.004741 0.034615 0.002013 0.026876 0.936496 0.200422 0.116873 0.002745 0.679959 0.016780 0.003870 0.648667 0.330682 0.046444 0.083237 0.540349 0.329969 0.288623 0.203858 0.174034 0.333485 0.335637 0.175638 0.191020 0.297705 0.279189 0.190404 0.316791 0.213616 Consensus sequence: HDHHTTTTATTKKHDD Alignment: HDHHTTTTATTKKHDD -----TYTATWT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00134 Hoxb13 Reverse Complement Reverse Complement Forward 6 7 0.006539 Species: Mus musculus Original motif 0.376100 0.272625 0.202253 0.149021 0.479072 0.116315 0.274952 0.129661 0.297412 0.328646 0.182054 0.191889 0.052067 0.771717 0.088083 0.088133 0.018222 0.666056 0.006952 0.308770 0.755568 0.122362 0.001339 0.120731 0.915413 0.001023 0.052340 0.031225 0.002612 0.028396 0.000695 0.968297 0.831092 0.001851 0.005615 0.161442 0.927869 0.001839 0.001169 0.069123 0.967747 0.009603 0.002871 0.019778 0.843186 0.073812 0.055868 0.027134 0.371084 0.143031 0.086222 0.399662 0.264976 0.212885 0.118960 0.403179 0.215633 0.345186 0.105518 0.333663 0.221910 0.297212 0.329310 0.151568 Consensus sequence: VRHCCAATAAAAWHHV Reverse complement motif 0.221910 0.329310 0.297212 0.151568 0.215633 0.105518 0.345186 0.333663 0.403179 0.212885 0.118960 0.264976 0.399662 0.143031 0.086222 0.371084 0.027134 0.073812 0.055868 0.843186 0.019778 0.009603 0.002871 0.967747 0.069123 0.001839 0.001169 0.927869 0.161442 0.001851 0.005615 0.831092 0.968297 0.028396 0.000695 0.002612 0.031225 0.001023 0.052340 0.915413 0.120731 0.122362 0.001339 0.755568 0.018222 0.006952 0.666056 0.308770 0.052067 0.088083 0.771717 0.088133 0.297412 0.182054 0.328646 0.191889 0.129661 0.116315 0.274952 0.479072 0.149021 0.272625 0.202253 0.376100 Consensus sequence: VDHWTTTTATTGGDKB Alignment: VDHWTTTTATTGGDKB -----TYTATWT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00121 Hoxd10 Reverse Complement Reverse Complement Backward 5 7 0.012406 Species: Mus musculus Original motif 0.405345 0.293266 0.220907 0.080482 0.398063 0.099034 0.333525 0.169378 0.049753 0.190411 0.336789 0.423048 0.243698 0.226261 0.324346 0.205696 0.030873 0.549741 0.008321 0.411065 0.714225 0.228092 0.020960 0.036723 0.833992 0.010944 0.021918 0.133146 0.008898 0.026169 0.008341 0.956591 0.811684 0.004889 0.004751 0.178676 0.952107 0.004322 0.004587 0.038984 0.925365 0.008360 0.006811 0.059464 0.850659 0.058250 0.065237 0.025855 0.193369 0.242985 0.049515 0.514131 0.266774 0.080601 0.239781 0.412844 0.335522 0.125500 0.188170 0.350809 0.407171 0.120540 0.187300 0.284989 0.281181 0.242348 0.160247 0.316224 Consensus sequence: VDKVYAATAAAATDDDH Reverse complement motif 0.316224 0.242348 0.160247 0.281181 0.284989 0.120540 0.187300 0.407171 0.350809 0.125500 0.188170 0.335522 0.412844 0.080601 0.239781 0.266774 0.514131 0.242985 0.049515 0.193369 0.025855 0.058250 0.065237 0.850659 0.059464 0.008360 0.006811 0.925365 0.038984 0.004322 0.004587 0.952107 0.178676 0.004889 0.004751 0.811684 0.956591 0.026169 0.008341 0.008898 0.133146 0.010944 0.021918 0.833992 0.036723 0.228092 0.020960 0.714225 0.030873 0.008321 0.549741 0.411065 0.243698 0.324346 0.226261 0.205696 0.423048 0.190411 0.336789 0.049753 0.169378 0.099034 0.333525 0.398063 0.080482 0.293266 0.220907 0.405345 Consensus sequence: HDDDATTTTATTKVRDB Alignment: HDDDATTTTATTKVRDB ------TYTATWT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_primary Original Motif Original Motif Backward 4 7 0.012625 Species: Mus musculus Original motif 0.335487 0.205062 0.128957 0.330494 0.411635 0.179625 0.175701 0.233038 0.412976 0.128602 0.091890 0.366532 0.608396 0.079002 0.107142 0.205460 0.433474 0.035203 0.153143 0.378180 0.087552 0.005003 0.894586 0.012858 0.004459 0.038951 0.001109 0.955481 0.924470 0.068560 0.001165 0.005805 0.920483 0.070039 0.001674 0.007805 0.988335 0.001902 0.003155 0.006608 0.001527 0.656726 0.002699 0.339047 0.987505 0.001810 0.004336 0.006349 0.719584 0.065184 0.050384 0.164848 0.535389 0.099997 0.102849 0.261764 0.245215 0.272017 0.301499 0.181269 0.306107 0.209040 0.248687 0.236166 0.223744 0.278668 0.251931 0.245657 Consensus sequence: HHWAWGTAAAYAAAVDB Reverse complement motif 0.223744 0.251931 0.278668 0.245657 0.236166 0.209040 0.248687 0.306107 0.245215 0.301499 0.272017 0.181269 0.261764 0.099997 0.102849 0.535389 0.164848 0.065184 0.050384 0.719584 0.006349 0.001810 0.004336 0.987505 0.001527 0.002699 0.656726 0.339047 0.006608 0.001902 0.003155 0.988335 0.007805 0.070039 0.001674 0.920483 0.005805 0.068560 0.001165 0.924470 0.955481 0.038951 0.001109 0.004459 0.087552 0.894586 0.005003 0.012858 0.378180 0.035203 0.153143 0.433474 0.205460 0.079002 0.107142 0.608396 0.366532 0.128602 0.091890 0.412976 0.233038 0.179625 0.175701 0.411635 0.330494 0.205062 0.128957 0.335487 Consensus sequence: BDVTTTKTTTACWTWHH Alignment: HHWAWGTAAAYAAAVDB -------AWATAMA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00041 Foxj1_primary Original Motif Original Motif Backward 5 7 0.014764 Species: Mus musculus Original motif 0.446042 0.209997 0.124191 0.219770 0.271534 0.218131 0.245258 0.265077 0.368646 0.184693 0.168482 0.278180 0.348384 0.034204 0.583335 0.034077 0.040365 0.085618 0.013162 0.860855 0.824790 0.156631 0.004063 0.014515 0.835134 0.069381 0.003505 0.091980 0.967572 0.009280 0.006259 0.016890 0.009507 0.909577 0.004492 0.076424 0.947956 0.006994 0.008177 0.036873 0.599204 0.170666 0.065622 0.164508 0.708795 0.035865 0.070557 0.184782 0.303191 0.287145 0.184748 0.224917 0.285550 0.184167 0.248662 0.281621 0.235315 0.210836 0.254428 0.299421 0.220038 0.158539 0.286552 0.334871 Consensus sequence: HDHRTAAACAAAHDDD Reverse complement motif 0.334871 0.158539 0.286552 0.220038 0.299421 0.210836 0.254428 0.235315 0.281621 0.184167 0.248662 0.285550 0.224917 0.287145 0.184748 0.303191 0.184782 0.035865 0.070557 0.708795 0.164508 0.170666 0.065622 0.599204 0.036873 0.006994 0.008177 0.947956 0.009507 0.004492 0.909577 0.076424 0.016890 0.009280 0.006259 0.967572 0.091980 0.069381 0.003505 0.835134 0.014515 0.156631 0.004063 0.824790 0.860855 0.085618 0.013162 0.040365 0.348384 0.583335 0.034204 0.034077 0.278180 0.184693 0.168482 0.368646 0.265077 0.218131 0.245258 0.271534 0.219770 0.209997 0.124191 0.446042 Consensus sequence: DDDHTTTGTTTAMHDH Alignment: HDHRTAAACAAAHDDD -----AWATAMA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_primary Original Motif Original Motif Backward 4 7 0.018215 Species: Mus musculus Original motif 0.323208 0.152915 0.185111 0.338766 0.428132 0.056109 0.099487 0.416272 0.659386 0.039965 0.035805 0.264843 0.647143 0.049206 0.078984 0.224667 0.208834 0.076592 0.071631 0.642943 0.341077 0.003865 0.649511 0.005547 0.016627 0.001866 0.001715 0.979792 0.952319 0.045294 0.000870 0.001516 0.988834 0.004620 0.000720 0.005826 0.989346 0.001005 0.006467 0.003182 0.001093 0.784230 0.001235 0.213442 0.991209 0.002017 0.001737 0.005037 0.801581 0.037084 0.023060 0.138274 0.528554 0.089350 0.107501 0.274595 0.208802 0.268646 0.368022 0.154530 0.280218 0.221367 0.340497 0.157918 0.146611 0.250725 0.293524 0.309140 Consensus sequence: DWAATRTAAACAAWVVB Reverse complement motif 0.309140 0.250725 0.293524 0.146611 0.280218 0.340497 0.221367 0.157918 0.208802 0.368022 0.268646 0.154530 0.274595 0.089350 0.107501 0.528554 0.138274 0.037084 0.023060 0.801581 0.005037 0.002017 0.001737 0.991209 0.001093 0.001235 0.784230 0.213442 0.003182 0.001005 0.006467 0.989346 0.005826 0.004620 0.000720 0.988834 0.001516 0.045294 0.000870 0.952319 0.979792 0.001866 0.001715 0.016627 0.341077 0.649511 0.003865 0.005547 0.642943 0.076592 0.071631 0.208834 0.224667 0.049206 0.078984 0.647143 0.264843 0.039965 0.035805 0.659386 0.416272 0.056109 0.099487 0.428132 0.338766 0.152915 0.185111 0.323208 Consensus sequence: VVVWTTGTTTAMATTWD Alignment: DWAATRTAAACAAWVVB -------AWATAMA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_primary Original Motif Original Motif Forward 8 7 0.019417 Species: Mus musculus Original motif 0.273456 0.257473 0.208488 0.260583 0.338566 0.133379 0.306363 0.221693 0.475488 0.192852 0.156858 0.174803 0.506619 0.132646 0.170373 0.190362 0.349042 0.127275 0.325924 0.197759 0.303850 0.013619 0.678034 0.004497 0.014136 0.015691 0.003073 0.967100 0.913373 0.082928 0.001910 0.001789 0.956294 0.017745 0.000584 0.025378 0.987796 0.001685 0.004159 0.006360 0.002288 0.814764 0.001427 0.181521 0.986707 0.002688 0.003346 0.007259 0.787378 0.065481 0.057961 0.089180 0.572982 0.089910 0.066184 0.270924 0.224167 0.339979 0.258886 0.176968 0.268414 0.272007 0.239541 0.220038 0.241771 0.394748 0.174273 0.189208 Consensus sequence: HDHADGTAAACAAAVVH Reverse complement motif 0.241771 0.174273 0.394748 0.189208 0.268414 0.239541 0.272007 0.220038 0.224167 0.258886 0.339979 0.176968 0.270924 0.089910 0.066184 0.572982 0.089180 0.065481 0.057961 0.787378 0.007259 0.002688 0.003346 0.986707 0.002288 0.001427 0.814764 0.181521 0.006360 0.001685 0.004159 0.987796 0.025378 0.017745 0.000584 0.956294 0.001789 0.082928 0.001910 0.913373 0.967100 0.015691 0.003073 0.014136 0.303850 0.678034 0.013619 0.004497 0.197759 0.127275 0.325924 0.349042 0.190362 0.132646 0.170373 0.506619 0.174803 0.192852 0.156858 0.475488 0.221693 0.133379 0.306363 0.338566 0.260583 0.257473 0.208488 0.273456 Consensus sequence: DVVTTTGTTTACDTHDH Alignment: HDHADGTAAACAAAVVH -------AWATAMA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_primary Original Motif Original Motif Forward 8 7 0.021405 Species: Mus musculus Original motif 0.338172 0.192194 0.207817 0.261817 0.407924 0.117261 0.278236 0.196580 0.595570 0.070480 0.119221 0.214729 0.710845 0.038748 0.052600 0.197807 0.124647 0.116138 0.178053 0.581162 0.201602 0.005514 0.792110 0.000774 0.024590 0.004193 0.001331 0.969886 0.919465 0.077871 0.000760 0.001904 0.972342 0.010395 0.000580 0.016683 0.991045 0.001495 0.003585 0.003875 0.001358 0.885197 0.000980 0.112465 0.990318 0.001846 0.002968 0.004867 0.804563 0.063147 0.023496 0.108795 0.564824 0.087976 0.102865 0.244336 0.269947 0.300278 0.285008 0.144767 0.337905 0.220102 0.253694 0.188299 0.153781 0.274135 0.318343 0.253741 Consensus sequence: DDAATGTAAACAAAVVB Reverse complement motif 0.153781 0.318343 0.274135 0.253741 0.188299 0.220102 0.253694 0.337905 0.269947 0.285008 0.300278 0.144767 0.244336 0.087976 0.102865 0.564824 0.108795 0.063147 0.023496 0.804563 0.004867 0.001846 0.002968 0.990318 0.001358 0.000980 0.885197 0.112465 0.003875 0.001495 0.003585 0.991045 0.016683 0.010395 0.000580 0.972342 0.001904 0.077871 0.000760 0.919465 0.969886 0.004193 0.001331 0.024590 0.201602 0.792110 0.005514 0.000774 0.581162 0.116138 0.178053 0.124647 0.197807 0.038748 0.052600 0.710845 0.214729 0.070480 0.119221 0.595570 0.196580 0.117261 0.278236 0.407924 0.261817 0.192194 0.207817 0.338172 Consensus sequence: BBVTTTGTTTACATTDD Alignment: DDAATGTAAACAAAVVB -------AWATAMA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00133 Cdx2 Original Motif Original Motif Backward 5 7 0.021630 Species: Mus musculus Original motif 0.314704 0.147028 0.248638 0.289630 0.358628 0.179740 0.325491 0.136141 0.298646 0.303363 0.300590 0.097401 0.188478 0.055557 0.664045 0.091921 0.171259 0.033449 0.790542 0.004751 0.002849 0.464940 0.000596 0.531615 0.576948 0.399193 0.001565 0.022295 0.968872 0.001511 0.028582 0.001035 0.006970 0.003535 0.000486 0.989010 0.878078 0.003399 0.000389 0.118134 0.951183 0.000842 0.001555 0.046419 0.939504 0.006021 0.000818 0.053657 0.567732 0.151536 0.050535 0.230197 0.172713 0.264434 0.122553 0.440299 0.142175 0.107265 0.258247 0.492313 0.215178 0.302818 0.133613 0.348391 Consensus sequence: DVVGGYMATAAAAHKH Reverse complement motif 0.348391 0.302818 0.133613 0.215178 0.492313 0.107265 0.258247 0.142175 0.440299 0.264434 0.122553 0.172713 0.230197 0.151536 0.050535 0.567732 0.053657 0.006021 0.000818 0.939504 0.046419 0.000842 0.001555 0.951183 0.118134 0.003399 0.000389 0.878078 0.989010 0.003535 0.000486 0.006970 0.001035 0.001511 0.028582 0.968872 0.022295 0.399193 0.001565 0.576948 0.531615 0.464940 0.000596 0.002849 0.171259 0.790542 0.033449 0.004751 0.188478 0.664045 0.055557 0.091921 0.298646 0.300590 0.303363 0.097401 0.136141 0.179740 0.325491 0.358628 0.289630 0.147028 0.248638 0.314704 Consensus sequence: HRHTTTTATYMCCVBD Alignment: DVVGGYMATAAAAHKH -----AWATAMA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00191 Pou2f2 Original Motif Original Motif Forward 9 7 0.023783 Species: Mus musculus Original motif 0.143441 0.268530 0.212213 0.375817 0.267386 0.204043 0.174256 0.354316 0.230583 0.148604 0.348518 0.272295 0.127633 0.095216 0.030997 0.746154 0.987721 0.002410 0.003474 0.006395 0.003588 0.019280 0.002951 0.974182 0.005844 0.003199 0.919428 0.071529 0.004446 0.890754 0.005987 0.098813 0.743311 0.001562 0.003671 0.251456 0.893912 0.003008 0.014228 0.088852 0.982166 0.003049 0.002708 0.012076 0.027054 0.005668 0.023977 0.943301 0.197736 0.122428 0.271727 0.408108 0.496910 0.196661 0.105572 0.200857 0.347287 0.129915 0.369062 0.153737 0.409641 0.236160 0.215425 0.138774 Consensus sequence: BHDTATGCAAATDHDV Reverse complement motif 0.138774 0.236160 0.215425 0.409641 0.347287 0.369062 0.129915 0.153737 0.200857 0.196661 0.105572 0.496910 0.408108 0.122428 0.271727 0.197736 0.943301 0.005668 0.023977 0.027054 0.012076 0.003049 0.002708 0.982166 0.088852 0.003008 0.014228 0.893912 0.251456 0.001562 0.003671 0.743311 0.004446 0.005987 0.890754 0.098813 0.005844 0.919428 0.003199 0.071529 0.974182 0.019280 0.002951 0.003588 0.006395 0.002410 0.003474 0.987721 0.746154 0.095216 0.030997 0.127633 0.230583 0.348518 0.148604 0.272295 0.354316 0.204043 0.174256 0.267386 0.375817 0.268530 0.212213 0.143441 Consensus sequence: BHHDATTTGCATAHHV Alignment: BHDTATGCAAATDHDV --------AWATAMA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 4 Motif name: Motif 4 Original motif 0.000000 1.000000 0.000000 0.000000 0.000000 0.487556 0.000000 0.512444 0.156506 0.277601 0.263070 0.302823 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 Consensus sequence: CYBCCTCC Reserve complement motif 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.302823 0.277601 0.263070 0.156506 0.512444 0.487556 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: GGAGGVMG ************************************************************************ Best Matches for Motif ID 4 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Original Motif Original Motif Backward 4 8 0.004759 Species: Mus musculus Original motif 0.201535 0.165213 0.201324 0.431929 0.136153 0.443451 0.179132 0.241264 0.263149 0.555137 0.067983 0.113731 0.142183 0.737634 0.045722 0.074461 0.044982 0.884112 0.045356 0.025549 0.246434 0.590578 0.022655 0.140333 0.123049 0.591257 0.033072 0.252622 0.018153 0.944742 0.010254 0.026851 0.035459 0.953844 0.003988 0.006709 0.020000 0.954344 0.005966 0.019690 0.015299 0.964390 0.006755 0.013557 0.028565 0.936152 0.011660 0.023623 0.300127 0.517309 0.029700 0.152863 0.159063 0.513443 0.051834 0.275660 0.158172 0.647055 0.133256 0.061516 Consensus sequence: DBCCCCCCCCCCMYC Reverse complement motif 0.158172 0.133256 0.647055 0.061516 0.159063 0.051834 0.513443 0.275660 0.300127 0.029700 0.517309 0.152863 0.028565 0.011660 0.936152 0.023623 0.015299 0.006755 0.964390 0.013557 0.020000 0.005966 0.954344 0.019690 0.035459 0.003988 0.953844 0.006709 0.018153 0.010254 0.944742 0.026851 0.123049 0.033072 0.591257 0.252622 0.246434 0.022655 0.590578 0.140333 0.044982 0.045356 0.884112 0.025549 0.142183 0.045722 0.737634 0.074461 0.263149 0.067983 0.555137 0.113731 0.136153 0.179132 0.443451 0.241264 0.431929 0.165213 0.201324 0.201535 Consensus sequence: GKRGGGGGGGGGGBD Alignment: DBCCCCCCCCCCMYC ----CYBCCTCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Original Motif Original Motif Forward 7 8 0.021123 Species: Mus musculus Original motif 0.404007 0.395873 0.173319 0.026801 0.305977 0.215534 0.215359 0.263130 0.370148 0.250957 0.113088 0.265808 0.324336 0.229498 0.174679 0.271487 0.263563 0.137896 0.079217 0.519324 0.265762 0.222582 0.082555 0.429102 0.206721 0.288405 0.017851 0.487023 0.164361 0.236500 0.061051 0.538088 0.593344 0.348446 0.050304 0.007906 0.031328 0.947050 0.007032 0.014590 0.010428 0.956605 0.029142 0.003825 0.459636 0.207616 0.155368 0.177380 0.014573 0.964608 0.012209 0.008610 0.066291 0.918196 0.008729 0.006784 0.019488 0.866774 0.018897 0.094841 0.767405 0.104198 0.029234 0.099164 0.052494 0.772531 0.039832 0.135142 0.296085 0.243498 0.350935 0.109482 0.518843 0.226659 0.124784 0.129714 0.647901 0.019721 0.159901 0.172477 0.113912 0.231511 0.214864 0.439713 0.223117 0.310596 0.293328 0.172959 0.185557 0.487662 0.136321 0.190459 Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Reverse complement motif 0.185557 0.136321 0.487662 0.190459 0.223117 0.293328 0.310596 0.172959 0.439713 0.231511 0.214864 0.113912 0.172477 0.019721 0.159901 0.647901 0.129714 0.226659 0.124784 0.518843 0.296085 0.350935 0.243498 0.109482 0.052494 0.039832 0.772531 0.135142 0.099164 0.104198 0.029234 0.767405 0.019488 0.018897 0.866774 0.094841 0.066291 0.008729 0.918196 0.006784 0.014573 0.012209 0.964608 0.008610 0.177380 0.207616 0.155368 0.459636 0.010428 0.029142 0.956605 0.003825 0.031328 0.007032 0.947050 0.014590 0.007906 0.348446 0.050304 0.593344 0.538088 0.236500 0.061051 0.164361 0.487023 0.288405 0.017851 0.206721 0.429102 0.222582 0.082555 0.265762 0.519324 0.137896 0.079217 0.263563 0.271487 0.229498 0.174679 0.324336 0.265808 0.250957 0.113088 0.370148 0.263130 0.215534 0.215359 0.305977 0.026801 0.395873 0.173319 0.404007 Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH ------CYBCCTCC--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Reverse Complement Original Motif Backward 6 8 0.021430 Species: Mus musculus Original motif 0.214165 0.143436 0.372522 0.269876 0.314445 0.406003 0.160351 0.119201 0.137147 0.092924 0.042921 0.727007 0.044121 0.072843 0.051741 0.831295 0.261292 0.324124 0.298498 0.116086 0.258125 0.323243 0.263362 0.155271 0.204557 0.589399 0.107153 0.098891 0.371021 0.244027 0.291102 0.093849 0.096327 0.572718 0.011797 0.319159 0.027282 0.046183 0.844519 0.082016 0.018921 0.012887 0.915917 0.052275 0.364793 0.166722 0.084229 0.384256 0.028216 0.011233 0.951056 0.009495 0.054974 0.004738 0.890377 0.049911 0.006802 0.312915 0.134247 0.546036 0.241289 0.628210 0.104788 0.025713 0.237863 0.302807 0.213018 0.246311 0.349399 0.203220 0.086635 0.360746 0.386634 0.144693 0.246895 0.221779 0.425101 0.354676 0.093374 0.126849 0.060272 0.391320 0.104905 0.443503 0.162090 0.190233 0.227433 0.420244 Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Reverse complement motif 0.420244 0.190233 0.227433 0.162090 0.443503 0.391320 0.104905 0.060272 0.126849 0.354676 0.093374 0.425101 0.221779 0.144693 0.246895 0.386634 0.360746 0.203220 0.086635 0.349399 0.237863 0.213018 0.302807 0.246311 0.241289 0.104788 0.628210 0.025713 0.546036 0.312915 0.134247 0.006802 0.054974 0.890377 0.004738 0.049911 0.028216 0.951056 0.011233 0.009495 0.384256 0.166722 0.084229 0.364793 0.018921 0.915917 0.012887 0.052275 0.027282 0.844519 0.046183 0.082016 0.096327 0.011797 0.572718 0.319159 0.093849 0.244027 0.291102 0.371021 0.204557 0.107153 0.589399 0.098891 0.258125 0.263362 0.323243 0.155271 0.261292 0.298498 0.324124 0.116086 0.831295 0.072843 0.051741 0.044121 0.727007 0.092924 0.042921 0.137147 0.314445 0.160351 0.406003 0.119201 0.214165 0.372522 0.143436 0.269876 Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH Alignment: DVTTVVCVYGGHGGYCHHDMYB ---------GGAGGVMG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Original Motif Original Motif Forward 2 8 0.021535 Species: Mus musculus Original motif 0.211547 0.282708 0.203472 0.302273 0.141988 0.722437 0.054854 0.080721 0.032605 0.877172 0.012432 0.077792 0.115126 0.070606 0.781290 0.032979 0.003516 0.990021 0.002265 0.004198 0.004715 0.982482 0.009897 0.002906 0.001627 0.975937 0.001662 0.020774 0.262352 0.731732 0.002730 0.003187 0.005890 0.985756 0.002081 0.006273 0.022893 0.090460 0.649322 0.237324 0.023038 0.859949 0.037913 0.079101 0.567633 0.057394 0.166792 0.208181 0.176597 0.331265 0.125308 0.366830 0.183049 0.183774 0.226793 0.406384 Consensus sequence: HCCGCCCCCGCAHB Reverse complement motif 0.406384 0.183774 0.226793 0.183049 0.366830 0.331265 0.125308 0.176597 0.208181 0.057394 0.166792 0.567633 0.023038 0.037913 0.859949 0.079101 0.022893 0.649322 0.090460 0.237324 0.005890 0.002081 0.985756 0.006273 0.262352 0.002730 0.731732 0.003187 0.001627 0.001662 0.975937 0.020774 0.004715 0.009897 0.982482 0.002906 0.003516 0.002265 0.990021 0.004198 0.115126 0.781290 0.070606 0.032979 0.032605 0.012432 0.877172 0.077792 0.141988 0.054854 0.722437 0.080721 0.302273 0.282708 0.203472 0.211547 Consensus sequence: VHTGCGGGGGCGGH Alignment: HCCGCCCCCGCAHB -CYBCCTCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_primary Original Motif Reverse Complement Forward 3 8 0.026286 Species: Mus musculus Original motif 0.302837 0.133017 0.249940 0.314205 0.378542 0.186425 0.250700 0.184332 0.184780 0.144329 0.262766 0.408125 0.308569 0.039689 0.235695 0.416047 0.817738 0.108938 0.033419 0.039905 0.018996 0.007718 0.013175 0.960112 0.009278 0.002422 0.973921 0.014379 0.005587 0.002693 0.985088 0.006633 0.005874 0.004232 0.976927 0.012967 0.951309 0.011835 0.023187 0.013669 0.005927 0.004521 0.005701 0.983851 0.146443 0.003009 0.840720 0.009829 0.002553 0.044504 0.542059 0.410884 0.406299 0.375782 0.133922 0.083997 0.256884 0.160184 0.271190 0.311742 0.388381 0.141811 0.214600 0.255208 0.340877 0.274387 0.205585 0.179151 Consensus sequence: DVDDATGGGATGKMDDV Reverse complement motif 0.179151 0.274387 0.205585 0.340877 0.255208 0.141811 0.214600 0.388381 0.311742 0.160184 0.271190 0.256884 0.083997 0.375782 0.133922 0.406299 0.002553 0.542059 0.044504 0.410884 0.146443 0.840720 0.003009 0.009829 0.983851 0.004521 0.005701 0.005927 0.013669 0.011835 0.023187 0.951309 0.005874 0.976927 0.004232 0.012967 0.005587 0.985088 0.002693 0.006633 0.009278 0.973921 0.002422 0.014379 0.960112 0.007718 0.013175 0.018996 0.039905 0.108938 0.033419 0.817738 0.416047 0.039689 0.235695 0.308569 0.408125 0.144329 0.262766 0.184780 0.184332 0.186425 0.250700 0.378542 0.314205 0.133017 0.249940 0.302837 Consensus sequence: BDDYYCATCCCATDDBD Alignment: BDDYYCATCCCATDDBD --CYBCCTCC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Original Motif Original Motif Forward 4 8 0.027355 Species: Mus musculus Original motif 0.136946 0.396508 0.135309 0.331236 0.185528 0.417538 0.215409 0.181525 0.171276 0.341901 0.172832 0.313991 0.145641 0.590572 0.146376 0.117412 0.138035 0.660416 0.114016 0.087533 0.222728 0.750532 0.007528 0.019212 0.024633 0.963314 0.001894 0.010159 0.009557 0.979956 0.000642 0.009844 0.010416 0.977424 0.000541 0.011619 0.026401 0.956740 0.001544 0.015314 0.195502 0.755959 0.011060 0.037480 0.491291 0.364785 0.025613 0.118311 0.305153 0.398160 0.071680 0.225008 0.253497 0.232647 0.213246 0.300610 0.156964 0.297876 0.144683 0.400477 0.179549 0.292514 0.319462 0.208475 Consensus sequence: HVBCCCCCCCCMHHHB Reverse complement motif 0.179549 0.319462 0.292514 0.208475 0.400477 0.297876 0.144683 0.156964 0.300610 0.232647 0.213246 0.253497 0.305153 0.071680 0.398160 0.225008 0.118311 0.364785 0.025613 0.491291 0.195502 0.011060 0.755959 0.037480 0.026401 0.001544 0.956740 0.015314 0.010416 0.000541 0.977424 0.011619 0.009557 0.000642 0.979956 0.009844 0.024633 0.001894 0.963314 0.010159 0.222728 0.007528 0.750532 0.019212 0.138035 0.114016 0.660416 0.087533 0.145641 0.146376 0.590572 0.117412 0.171276 0.172832 0.341901 0.313991 0.185528 0.215409 0.417538 0.181525 0.136946 0.135309 0.396508 0.331236 Consensus sequence: BHHDYGGGGGGGGBVD Alignment: HVBCCCCCCCCMHHHB ---CYBCCTCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00047 Zbtb7b_primary Reverse Complement Reverse Complement Forward 7 8 0.029472 Species: Mus musculus Original motif 0.346946 0.168959 0.284689 0.199406 0.368623 0.144282 0.255122 0.231973 0.231438 0.167540 0.443911 0.157110 0.048139 0.713513 0.224736 0.013612 0.005943 0.982494 0.009265 0.002298 0.005729 0.990328 0.002017 0.001925 0.012634 0.982154 0.001044 0.004167 0.003906 0.974044 0.002213 0.019837 0.092161 0.786818 0.026401 0.094621 0.372382 0.157921 0.109317 0.360380 0.615307 0.152879 0.040223 0.191591 0.669723 0.112856 0.072817 0.144604 0.433088 0.064050 0.180057 0.322805 0.487027 0.216787 0.092562 0.203624 0.140487 0.242560 0.157093 0.459860 Consensus sequence: DDVCCCCCCHAAWHB Reverse complement motif 0.459860 0.242560 0.157093 0.140487 0.203624 0.216787 0.092562 0.487027 0.322805 0.064050 0.180057 0.433088 0.144604 0.112856 0.072817 0.669723 0.191591 0.152879 0.040223 0.615307 0.360380 0.157921 0.109317 0.372382 0.092161 0.026401 0.786818 0.094621 0.003906 0.002213 0.974044 0.019837 0.012634 0.001044 0.982154 0.004167 0.005729 0.002017 0.990328 0.001925 0.005943 0.009265 0.982494 0.002298 0.048139 0.224736 0.713513 0.013612 0.231438 0.443911 0.167540 0.157110 0.231973 0.144282 0.255122 0.368623 0.199406 0.168959 0.284689 0.346946 Consensus sequence: VHWTTHGGGGGGVDD Alignment: VHWTTHGGGGGGVDD ------GGAGGVMG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Reverse Complement Original Motif Backward 3 8 0.029693 Species: Mus musculus Original motif 0.120938 0.344851 0.124072 0.410138 0.220931 0.169844 0.422396 0.186829 0.127752 0.260812 0.103811 0.507625 0.140641 0.405473 0.287668 0.166218 0.296957 0.155579 0.301094 0.246370 0.219647 0.287193 0.154072 0.339087 0.049294 0.026059 0.121789 0.802859 0.520042 0.289284 0.173423 0.017251 0.049190 0.943472 0.004308 0.003030 0.902609 0.006767 0.074770 0.015854 0.003221 0.971329 0.005512 0.019937 0.019937 0.005512 0.971329 0.003221 0.015854 0.074770 0.006767 0.902609 0.003030 0.004308 0.943472 0.049190 0.003497 0.088920 0.685942 0.221641 0.802859 0.121789 0.026059 0.049294 0.334544 0.155170 0.275193 0.235092 0.275957 0.132104 0.454982 0.136957 0.134097 0.254352 0.422940 0.188611 0.396163 0.432784 0.051281 0.119772 0.276474 0.115627 0.419844 0.188056 0.160759 0.088061 0.649863 0.101318 0.203314 0.166595 0.106821 0.523270 Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Reverse complement motif 0.523270 0.166595 0.106821 0.203314 0.160759 0.649863 0.088061 0.101318 0.276474 0.419844 0.115627 0.188056 0.396163 0.051281 0.432784 0.119772 0.134097 0.422940 0.254352 0.188611 0.275957 0.454982 0.132104 0.136957 0.235092 0.155170 0.275193 0.334544 0.049294 0.121789 0.026059 0.802859 0.003497 0.685942 0.088920 0.221641 0.003030 0.943472 0.004308 0.049190 0.902609 0.074770 0.006767 0.015854 0.019937 0.971329 0.005512 0.003221 0.003221 0.005512 0.971329 0.019937 0.015854 0.006767 0.074770 0.902609 0.049190 0.004308 0.943472 0.003030 0.017251 0.289284 0.173423 0.520042 0.802859 0.026059 0.121789 0.049294 0.339087 0.287193 0.154072 0.219647 0.296957 0.301094 0.155579 0.246370 0.140641 0.287668 0.405473 0.166218 0.507625 0.260812 0.103811 0.127752 0.220931 0.422396 0.169844 0.186829 0.410138 0.344851 0.124072 0.120938 Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM Alignment: YDYBDHTMCACGTGGADDBMDGT -------------GGAGGVMG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_secondary Reverse Complement Reverse Complement Forward 8 8 0.031423 Species: Mus musculus Original motif 0.398967 0.071604 0.323957 0.205472 0.457709 0.058192 0.267218 0.216881 0.393346 0.032365 0.329533 0.244756 0.119528 0.091191 0.190078 0.599202 0.273933 0.123548 0.073075 0.529444 0.068935 0.812883 0.015245 0.102937 0.029664 0.907790 0.024804 0.037742 0.020725 0.933422 0.016796 0.029057 0.015086 0.948448 0.018030 0.018436 0.015628 0.884941 0.061172 0.038259 0.067508 0.744063 0.107305 0.081125 0.108097 0.140614 0.650174 0.101115 0.065696 0.247239 0.506149 0.180916 0.395005 0.077185 0.345914 0.181895 0.527081 0.093650 0.281853 0.097416 0.289378 0.245159 0.348803 0.116660 0.147136 0.260117 0.145993 0.446754 Consensus sequence: DDDTWCCCCCCGGDRVH Reverse complement motif 0.446754 0.260117 0.145993 0.147136 0.289378 0.348803 0.245159 0.116660 0.097416 0.093650 0.281853 0.527081 0.181895 0.077185 0.345914 0.395005 0.065696 0.506149 0.247239 0.180916 0.108097 0.650174 0.140614 0.101115 0.067508 0.107305 0.744063 0.081125 0.015628 0.061172 0.884941 0.038259 0.015086 0.018030 0.948448 0.018436 0.020725 0.016796 0.933422 0.029057 0.029664 0.024804 0.907790 0.037742 0.068935 0.015245 0.812883 0.102937 0.529444 0.123548 0.073075 0.273933 0.599202 0.091191 0.190078 0.119528 0.244756 0.032365 0.329533 0.393346 0.216881 0.058192 0.267218 0.457709 0.205472 0.071604 0.323957 0.398967 Consensus sequence: HVKDCCGGGGGGWADDD Alignment: HVKDCCGGGGGGWADDD -------GGAGGVMG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Original Motif Original Motif Forward 5 8 0.032435 Species: Mus musculus Original motif 0.155386 0.223380 0.374454 0.246780 0.247106 0.159582 0.345111 0.248201 0.238889 0.258354 0.165304 0.337454 0.255612 0.489586 0.051621 0.203182 0.450100 0.545383 0.001071 0.003447 0.003704 0.991007 0.002456 0.002833 0.035504 0.001814 0.928129 0.034553 0.001494 0.991406 0.003414 0.003686 0.003045 0.990628 0.005182 0.001145 0.000990 0.963237 0.001215 0.034557 0.148016 0.838396 0.000666 0.012922 0.014261 0.905847 0.007200 0.072692 0.083394 0.270068 0.058368 0.588170 0.149141 0.286783 0.142802 0.421274 0.204851 0.347195 0.253356 0.194597 0.184442 0.299908 0.194408 0.321242 0.125793 0.380109 0.245318 0.248780 Consensus sequence: BDHHMCGCCCCCTHVBB Reverse complement motif 0.125793 0.245318 0.380109 0.248780 0.321242 0.299908 0.194408 0.184442 0.204851 0.253356 0.347195 0.194597 0.421274 0.286783 0.142802 0.149141 0.588170 0.270068 0.058368 0.083394 0.014261 0.007200 0.905847 0.072692 0.148016 0.000666 0.838396 0.012922 0.000990 0.001215 0.963237 0.034557 0.003045 0.005182 0.990628 0.001145 0.001494 0.003414 0.991406 0.003686 0.035504 0.928129 0.001814 0.034553 0.003704 0.002456 0.991007 0.002833 0.450100 0.001071 0.545383 0.003447 0.255612 0.051621 0.489586 0.203182 0.337454 0.258354 0.165304 0.238889 0.247106 0.345111 0.159582 0.248201 0.155386 0.374454 0.223380 0.246780 Consensus sequence: BVVHAGGGGGCGRDHHB Alignment: BDHHMCGCCCCCTHVBB ----CYBCCTCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 5 Motif name: Motif 5 Original motif 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.571601 0.428399 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: AAAASAAA Reserve complement motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.428399 0.571601 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: TTTSTTTT ************************************************************************ Best Matches for Motif ID 5 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Original Motif Original Motif Backward 7 8 0.000000 Species: Mus musculus Original motif 0.427843 0.231210 0.119424 0.221523 0.196506 0.239531 0.304906 0.259057 0.302488 0.156922 0.290190 0.250401 0.433872 0.149126 0.196496 0.220506 0.258426 0.076511 0.475100 0.189963 0.841714 0.046453 0.099915 0.011918 0.983853 0.001612 0.001362 0.013174 0.003460 0.982032 0.005728 0.008780 0.989743 0.002253 0.002020 0.005984 0.990761 0.003397 0.002843 0.003000 0.770864 0.003540 0.001549 0.224048 0.235342 0.002598 0.757383 0.004677 0.371426 0.089574 0.529959 0.009040 0.480804 0.196949 0.240413 0.081833 0.187158 0.355102 0.216599 0.241142 0.248006 0.232182 0.157452 0.362360 0.403367 0.177684 0.164649 0.254300 Consensus sequence: HBDDDAACAAAGRVBHH Reverse complement motif 0.254300 0.177684 0.164649 0.403367 0.362360 0.232182 0.157452 0.248006 0.187158 0.216599 0.355102 0.241142 0.081833 0.196949 0.240413 0.480804 0.371426 0.529959 0.089574 0.009040 0.235342 0.757383 0.002598 0.004677 0.224048 0.003540 0.001549 0.770864 0.003000 0.003397 0.002843 0.990761 0.005984 0.002253 0.002020 0.989743 0.003460 0.005728 0.982032 0.008780 0.013174 0.001612 0.001362 0.983853 0.011918 0.046453 0.099915 0.841714 0.258426 0.475100 0.076511 0.189963 0.220506 0.149126 0.196496 0.433872 0.250401 0.156922 0.290190 0.302488 0.196506 0.304906 0.239531 0.259057 0.221523 0.231210 0.119424 0.427843 Consensus sequence: HHBBMCTTTGTTHDDBH Alignment: HBDDDAACAAAGRVBHH ---AAAASAAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Original Motif Original Motif Forward 4 8 0.000128 Species: Mus musculus Original motif 0.351812 0.238467 0.143954 0.265768 0.195246 0.235838 0.281473 0.287443 0.349478 0.172616 0.210739 0.267167 0.484061 0.110438 0.173131 0.232370 0.276692 0.070713 0.479604 0.172991 0.859124 0.044167 0.083951 0.012758 0.975608 0.002029 0.002285 0.020079 0.006422 0.978485 0.007124 0.007969 0.987489 0.003025 0.002868 0.006617 0.987739 0.005463 0.002730 0.004067 0.693013 0.004067 0.002445 0.300475 0.189100 0.003677 0.801408 0.005814 0.352090 0.072517 0.567737 0.007656 0.542316 0.176545 0.192768 0.088371 0.196382 0.304176 0.205985 0.293457 0.289415 0.201358 0.182937 0.326290 0.385801 0.216362 0.152363 0.245475 Consensus sequence: HBDDRAACAAAGRABHH Reverse complement motif 0.245475 0.216362 0.152363 0.385801 0.326290 0.201358 0.182937 0.289415 0.196382 0.205985 0.304176 0.293457 0.088371 0.176545 0.192768 0.542316 0.352090 0.567737 0.072517 0.007656 0.189100 0.801408 0.003677 0.005814 0.300475 0.004067 0.002445 0.693013 0.004067 0.005463 0.002730 0.987739 0.006617 0.003025 0.002868 0.987489 0.006422 0.007124 0.978485 0.007969 0.020079 0.002029 0.002285 0.975608 0.012758 0.044167 0.083951 0.859124 0.276692 0.479604 0.070713 0.172991 0.232370 0.110438 0.173131 0.484061 0.267167 0.172616 0.210739 0.349478 0.287443 0.235838 0.281473 0.195246 0.265768 0.238467 0.143954 0.351812 Consensus sequence: HHBTMCTTTGTTMDDVH Alignment: HBDDRAACAAAGRABHH ---AAAASAAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_primary Original Motif Original Motif Backward 4 8 0.000164 Species: Mus musculus Original motif 0.323208 0.152915 0.185111 0.338766 0.428132 0.056109 0.099487 0.416272 0.659386 0.039965 0.035805 0.264843 0.647143 0.049206 0.078984 0.224667 0.208834 0.076592 0.071631 0.642943 0.341077 0.003865 0.649511 0.005547 0.016627 0.001866 0.001715 0.979792 0.952319 0.045294 0.000870 0.001516 0.988834 0.004620 0.000720 0.005826 0.989346 0.001005 0.006467 0.003182 0.001093 0.784230 0.001235 0.213442 0.991209 0.002017 0.001737 0.005037 0.801581 0.037084 0.023060 0.138274 0.528554 0.089350 0.107501 0.274595 0.208802 0.268646 0.368022 0.154530 0.280218 0.221367 0.340497 0.157918 0.146611 0.250725 0.293524 0.309140 Consensus sequence: DWAATRTAAACAAWVVB Reverse complement motif 0.309140 0.250725 0.293524 0.146611 0.280218 0.340497 0.221367 0.157918 0.208802 0.368022 0.268646 0.154530 0.274595 0.089350 0.107501 0.528554 0.138274 0.037084 0.023060 0.801581 0.005037 0.002017 0.001737 0.991209 0.001093 0.001235 0.784230 0.213442 0.003182 0.001005 0.006467 0.989346 0.005826 0.004620 0.000720 0.988834 0.001516 0.045294 0.000870 0.952319 0.979792 0.001866 0.001715 0.016627 0.341077 0.649511 0.003865 0.005547 0.642943 0.076592 0.071631 0.208834 0.224667 0.049206 0.078984 0.647143 0.264843 0.039965 0.035805 0.659386 0.416272 0.056109 0.099487 0.428132 0.338766 0.152915 0.185111 0.323208 Consensus sequence: VVVWTTGTTTAMATTWD Alignment: DWAATRTAAACAAWVVB ------AAAASAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_primary Original Motif Original Motif Backward 4 8 0.000214 Species: Mus musculus Original motif 0.338172 0.192194 0.207817 0.261817 0.407924 0.117261 0.278236 0.196580 0.595570 0.070480 0.119221 0.214729 0.710845 0.038748 0.052600 0.197807 0.124647 0.116138 0.178053 0.581162 0.201602 0.005514 0.792110 0.000774 0.024590 0.004193 0.001331 0.969886 0.919465 0.077871 0.000760 0.001904 0.972342 0.010395 0.000580 0.016683 0.991045 0.001495 0.003585 0.003875 0.001358 0.885197 0.000980 0.112465 0.990318 0.001846 0.002968 0.004867 0.804563 0.063147 0.023496 0.108795 0.564824 0.087976 0.102865 0.244336 0.269947 0.300278 0.285008 0.144767 0.337905 0.220102 0.253694 0.188299 0.153781 0.274135 0.318343 0.253741 Consensus sequence: DDAATGTAAACAAAVVB Reverse complement motif 0.153781 0.318343 0.274135 0.253741 0.188299 0.220102 0.253694 0.337905 0.269947 0.285008 0.300278 0.144767 0.244336 0.087976 0.102865 0.564824 0.108795 0.063147 0.023496 0.804563 0.004867 0.001846 0.002968 0.990318 0.001358 0.000980 0.885197 0.112465 0.003875 0.001495 0.003585 0.991045 0.016683 0.010395 0.000580 0.972342 0.001904 0.077871 0.000760 0.919465 0.969886 0.004193 0.001331 0.024590 0.201602 0.792110 0.005514 0.000774 0.581162 0.116138 0.178053 0.124647 0.197807 0.038748 0.052600 0.710845 0.214729 0.070480 0.119221 0.595570 0.196580 0.117261 0.278236 0.407924 0.261817 0.192194 0.207817 0.338172 Consensus sequence: BBVTTTGTTTACATTDD Alignment: DDAATGTAAACAAAVVB ------AAAASAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_primary Reverse Complement Reverse Complement Forward 4 8 0.001715 Species: Mus musculus Original motif 0.273456 0.257473 0.208488 0.260583 0.338566 0.133379 0.306363 0.221693 0.475488 0.192852 0.156858 0.174803 0.506619 0.132646 0.170373 0.190362 0.349042 0.127275 0.325924 0.197759 0.303850 0.013619 0.678034 0.004497 0.014136 0.015691 0.003073 0.967100 0.913373 0.082928 0.001910 0.001789 0.956294 0.017745 0.000584 0.025378 0.987796 0.001685 0.004159 0.006360 0.002288 0.814764 0.001427 0.181521 0.986707 0.002688 0.003346 0.007259 0.787378 0.065481 0.057961 0.089180 0.572982 0.089910 0.066184 0.270924 0.224167 0.339979 0.258886 0.176968 0.268414 0.272007 0.239541 0.220038 0.241771 0.394748 0.174273 0.189208 Consensus sequence: HDHADGTAAACAAAVVH Reverse complement motif 0.241771 0.174273 0.394748 0.189208 0.268414 0.239541 0.272007 0.220038 0.224167 0.258886 0.339979 0.176968 0.270924 0.089910 0.066184 0.572982 0.089180 0.065481 0.057961 0.787378 0.007259 0.002688 0.003346 0.986707 0.002288 0.001427 0.814764 0.181521 0.006360 0.001685 0.004159 0.987796 0.025378 0.017745 0.000584 0.956294 0.001789 0.082928 0.001910 0.913373 0.967100 0.015691 0.003073 0.014136 0.303850 0.678034 0.013619 0.004497 0.197759 0.127275 0.325924 0.349042 0.190362 0.132646 0.170373 0.506619 0.174803 0.192852 0.156858 0.475488 0.221693 0.133379 0.306363 0.338566 0.260583 0.257473 0.208488 0.273456 Consensus sequence: DVVTTTGTTTACDTHDH Alignment: DVVTTTGTTTACDTHDH ---TTTSTTTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00171 Msx3 Reverse Complement Reverse Complement Backward 2 8 0.003446 Species: Mus musculus Original motif 0.317812 0.352438 0.231628 0.098123 0.601471 0.133830 0.164947 0.099752 0.399508 0.293187 0.098524 0.208781 0.754569 0.054130 0.133622 0.057678 0.770469 0.088090 0.086904 0.054537 0.038689 0.673100 0.189096 0.099115 0.004935 0.522968 0.000482 0.471615 0.986316 0.001484 0.009222 0.002978 0.991636 0.005079 0.001457 0.001828 0.009156 0.001857 0.001081 0.987906 0.013688 0.006588 0.000191 0.979532 0.987635 0.000354 0.005166 0.006845 0.701095 0.027828 0.154852 0.116224 0.181731 0.184800 0.303458 0.330011 0.224816 0.221032 0.182405 0.371747 0.310539 0.208307 0.099081 0.382073 Consensus sequence: VAHAACYAATTAABHH Reverse complement motif 0.382073 0.208307 0.099081 0.310539 0.371747 0.221032 0.182405 0.224816 0.330011 0.184800 0.303458 0.181731 0.116224 0.027828 0.154852 0.701095 0.006845 0.000354 0.005166 0.987635 0.979532 0.006588 0.000191 0.013688 0.987906 0.001857 0.001081 0.009156 0.001828 0.005079 0.001457 0.991636 0.002978 0.001484 0.009222 0.986316 0.004935 0.000482 0.522968 0.471615 0.038689 0.189096 0.673100 0.099115 0.054537 0.088090 0.086904 0.770469 0.057678 0.054130 0.133622 0.754569 0.208781 0.293187 0.098524 0.399508 0.099752 0.133830 0.164947 0.601471 0.317812 0.231628 0.352438 0.098123 Consensus sequence: HHVTTAATTKGTTHTV Alignment: HHVTTAATTKGTTHTV -------TTTSTTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_secondary Original Motif Original Motif Backward 4 8 0.005548 Species: Mus musculus Original motif 0.560226 0.121586 0.083231 0.234957 0.318077 0.149137 0.179955 0.352831 0.482497 0.118420 0.173594 0.225488 0.200166 0.160901 0.191493 0.447440 0.033691 0.569719 0.018901 0.377690 0.638020 0.166545 0.021254 0.174181 0.573953 0.105729 0.009308 0.311010 0.890518 0.053364 0.013424 0.042694 0.910758 0.028166 0.032648 0.028428 0.013358 0.738707 0.023981 0.223953 0.911783 0.018754 0.031898 0.037564 0.702891 0.068940 0.076823 0.151346 0.445507 0.320769 0.057216 0.176507 0.587798 0.129586 0.140592 0.142024 0.258981 0.330939 0.167334 0.242747 0.362022 0.333796 0.145861 0.158320 Consensus sequence: ADDDYAWAACAAMAHH Reverse complement motif 0.158320 0.333796 0.145861 0.362022 0.258981 0.167334 0.330939 0.242747 0.142024 0.129586 0.140592 0.587798 0.176507 0.320769 0.057216 0.445507 0.151346 0.068940 0.076823 0.702891 0.037564 0.018754 0.031898 0.911783 0.013358 0.023981 0.738707 0.223953 0.028428 0.028166 0.032648 0.910758 0.042694 0.053364 0.013424 0.890518 0.311010 0.105729 0.009308 0.573953 0.174181 0.166545 0.021254 0.638020 0.033691 0.018901 0.569719 0.377690 0.447440 0.160901 0.191493 0.200166 0.225488 0.118420 0.173594 0.482497 0.352831 0.149137 0.179955 0.318077 0.234957 0.121586 0.083231 0.560226 Consensus sequence: HDTYTTGTTWTKDDDT Alignment: ADDDYAWAACAAMAHH -----AAAASAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_primary Reverse Complement Reverse Complement Forward 4 8 0.006001 Species: Mus musculus Original motif 0.335487 0.205062 0.128957 0.330494 0.411635 0.179625 0.175701 0.233038 0.412976 0.128602 0.091890 0.366532 0.608396 0.079002 0.107142 0.205460 0.433474 0.035203 0.153143 0.378180 0.087552 0.005003 0.894586 0.012858 0.004459 0.038951 0.001109 0.955481 0.924470 0.068560 0.001165 0.005805 0.920483 0.070039 0.001674 0.007805 0.988335 0.001902 0.003155 0.006608 0.001527 0.656726 0.002699 0.339047 0.987505 0.001810 0.004336 0.006349 0.719584 0.065184 0.050384 0.164848 0.535389 0.099997 0.102849 0.261764 0.245215 0.272017 0.301499 0.181269 0.306107 0.209040 0.248687 0.236166 0.223744 0.278668 0.251931 0.245657 Consensus sequence: HHWAWGTAAAYAAAVDB Reverse complement motif 0.223744 0.251931 0.278668 0.245657 0.236166 0.209040 0.248687 0.306107 0.245215 0.301499 0.272017 0.181269 0.261764 0.099997 0.102849 0.535389 0.164848 0.065184 0.050384 0.719584 0.006349 0.001810 0.004336 0.987505 0.001527 0.002699 0.656726 0.339047 0.006608 0.001902 0.003155 0.988335 0.007805 0.070039 0.001674 0.920483 0.005805 0.068560 0.001165 0.924470 0.955481 0.038951 0.001109 0.004459 0.087552 0.894586 0.005003 0.012858 0.378180 0.035203 0.153143 0.433474 0.205460 0.079002 0.107142 0.608396 0.366532 0.128602 0.091890 0.412976 0.233038 0.179625 0.175701 0.411635 0.330494 0.205062 0.128957 0.335487 Consensus sequence: BDVTTTKTTTACWTWHH Alignment: BDVTTTKTTTACWTWHH ---TTTSTTTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00041 Foxj1_primary Reverse Complement Reverse Complement Backward 5 8 0.010833 Species: Mus musculus Original motif 0.446042 0.209997 0.124191 0.219770 0.271534 0.218131 0.245258 0.265077 0.368646 0.184693 0.168482 0.278180 0.348384 0.034204 0.583335 0.034077 0.040365 0.085618 0.013162 0.860855 0.824790 0.156631 0.004063 0.014515 0.835134 0.069381 0.003505 0.091980 0.967572 0.009280 0.006259 0.016890 0.009507 0.909577 0.004492 0.076424 0.947956 0.006994 0.008177 0.036873 0.599204 0.170666 0.065622 0.164508 0.708795 0.035865 0.070557 0.184782 0.303191 0.287145 0.184748 0.224917 0.285550 0.184167 0.248662 0.281621 0.235315 0.210836 0.254428 0.299421 0.220038 0.158539 0.286552 0.334871 Consensus sequence: HDHRTAAACAAAHDDD Reverse complement motif 0.334871 0.158539 0.286552 0.220038 0.299421 0.210836 0.254428 0.235315 0.281621 0.184167 0.248662 0.285550 0.224917 0.287145 0.184748 0.303191 0.184782 0.035865 0.070557 0.708795 0.164508 0.170666 0.065622 0.599204 0.036873 0.006994 0.008177 0.947956 0.009507 0.004492 0.909577 0.076424 0.016890 0.009280 0.006259 0.967572 0.091980 0.069381 0.003505 0.835134 0.014515 0.156631 0.004063 0.824790 0.860855 0.085618 0.013162 0.040365 0.348384 0.583335 0.034204 0.034077 0.278180 0.184693 0.168482 0.368646 0.265077 0.218131 0.245258 0.271534 0.219770 0.209997 0.124191 0.446042 Consensus sequence: DDDHTTTGTTTAMHDH Alignment: DDDHTTTGTTTAMHDH ----TTTSTTTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_secondary Reverse Complement Reverse Complement Backward 7 8 0.012608 Species: Mus musculus Original motif 0.317700 0.247432 0.215783 0.219085 0.352303 0.162638 0.230006 0.255053 0.168554 0.301758 0.264712 0.264975 0.529943 0.098389 0.260344 0.111324 0.205868 0.388676 0.197345 0.208111 0.033261 0.853848 0.009029 0.103862 0.673657 0.279649 0.037915 0.008779 0.496326 0.243318 0.006446 0.253910 0.913038 0.037006 0.017077 0.032879 0.948910 0.014865 0.012562 0.023664 0.010919 0.862142 0.009524 0.117414 0.955604 0.012514 0.012289 0.019594 0.409400 0.131244 0.138666 0.320691 0.465036 0.133548 0.065727 0.335688 0.212413 0.103583 0.412294 0.271710 0.182538 0.310768 0.349143 0.157550 0.294233 0.219194 0.238798 0.247776 Consensus sequence: HDBAHCAWAACADWDVD Reverse complement motif 0.247776 0.219194 0.238798 0.294233 0.182538 0.349143 0.310768 0.157550 0.212413 0.412294 0.103583 0.271710 0.335688 0.133548 0.065727 0.465036 0.320691 0.131244 0.138666 0.409400 0.019594 0.012514 0.012289 0.955604 0.010919 0.009524 0.862142 0.117414 0.023664 0.014865 0.012562 0.948910 0.032879 0.037006 0.017077 0.913038 0.253910 0.243318 0.006446 0.496326 0.008779 0.279649 0.037915 0.673657 0.033261 0.009029 0.853848 0.103862 0.205868 0.197345 0.388676 0.208111 0.111324 0.098389 0.260344 0.529943 0.168554 0.264712 0.301758 0.264975 0.255053 0.162638 0.230006 0.352303 0.219085 0.247432 0.215783 0.317700 Consensus sequence: DVHWDTGTTWTGDTBDH Alignment: DVHWDTGTTWTGDTBDH ---TTTSTTTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 6 Motif name: Motif 6 Original motif 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.524835 0.000000 0.475165 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 Consensus sequence: CCCCRCCC Reserve complement motif 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.475165 0.524835 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: GGGKGGGG ************************************************************************ Best Matches for Motif ID 6 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Original Motif Backward 5 8 0.000000 Species: Mus musculus Original motif 0.204514 0.198353 0.171218 0.425915 0.167188 0.296785 0.246082 0.289946 0.267330 0.148001 0.398674 0.185994 0.549386 0.060167 0.337100 0.053347 0.050746 0.900013 0.022169 0.027073 0.037905 0.920332 0.008360 0.033403 0.410356 0.566702 0.016267 0.006675 0.009526 0.982354 0.001060 0.007060 0.204292 0.001084 0.748567 0.046056 0.003955 0.988490 0.002821 0.004735 0.004264 0.988826 0.004311 0.002598 0.002758 0.929549 0.001244 0.066448 0.260332 0.421683 0.024720 0.293265 0.184798 0.247697 0.085237 0.482268 0.347537 0.197344 0.139961 0.315159 0.255281 0.166620 0.242297 0.335802 Consensus sequence: HBDRCCMCGCCCHHHD Reverse complement motif 0.335802 0.166620 0.242297 0.255281 0.315159 0.197344 0.139961 0.347537 0.482268 0.247697 0.085237 0.184798 0.260332 0.024720 0.421683 0.293265 0.002758 0.001244 0.929549 0.066448 0.004264 0.004311 0.988826 0.002598 0.003955 0.002821 0.988490 0.004735 0.204292 0.748567 0.001084 0.046056 0.009526 0.001060 0.982354 0.007060 0.410356 0.016267 0.566702 0.006675 0.037905 0.008360 0.920332 0.033403 0.050746 0.022169 0.900013 0.027073 0.053347 0.060167 0.337100 0.549386 0.267330 0.398674 0.148001 0.185994 0.167188 0.246082 0.296785 0.289946 0.425915 0.198353 0.171218 0.204514 Consensus sequence: DHHDGGGCGRGGKHBH Alignment: HBDRCCMCGCCCHHHD ----CCCCRCCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Reverse Complement Reverse Complement Backward 3 8 0.018986 Species: Mus musculus Original motif 0.201535 0.165213 0.201324 0.431929 0.136153 0.443451 0.179132 0.241264 0.263149 0.555137 0.067983 0.113731 0.142183 0.737634 0.045722 0.074461 0.044982 0.884112 0.045356 0.025549 0.246434 0.590578 0.022655 0.140333 0.123049 0.591257 0.033072 0.252622 0.018153 0.944742 0.010254 0.026851 0.035459 0.953844 0.003988 0.006709 0.020000 0.954344 0.005966 0.019690 0.015299 0.964390 0.006755 0.013557 0.028565 0.936152 0.011660 0.023623 0.300127 0.517309 0.029700 0.152863 0.159063 0.513443 0.051834 0.275660 0.158172 0.647055 0.133256 0.061516 Consensus sequence: DBCCCCCCCCCCMYC Reverse complement motif 0.158172 0.133256 0.647055 0.061516 0.159063 0.051834 0.513443 0.275660 0.300127 0.029700 0.517309 0.152863 0.028565 0.011660 0.936152 0.023623 0.015299 0.006755 0.964390 0.013557 0.020000 0.005966 0.954344 0.019690 0.035459 0.003988 0.953844 0.006709 0.018153 0.010254 0.944742 0.026851 0.123049 0.033072 0.591257 0.252622 0.246434 0.022655 0.590578 0.140333 0.044982 0.045356 0.884112 0.025549 0.142183 0.045722 0.737634 0.074461 0.263149 0.067983 0.555137 0.113731 0.136153 0.179132 0.443451 0.241264 0.431929 0.165213 0.201324 0.201535 Consensus sequence: GKRGGGGGGGGGGBD Alignment: GKRGGGGGGGGGGBD -----GGGKGGGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Reverse Complement Reverse Complement Forward 6 8 0.025492 Species: Mus musculus Original motif 0.136946 0.396508 0.135309 0.331236 0.185528 0.417538 0.215409 0.181525 0.171276 0.341901 0.172832 0.313991 0.145641 0.590572 0.146376 0.117412 0.138035 0.660416 0.114016 0.087533 0.222728 0.750532 0.007528 0.019212 0.024633 0.963314 0.001894 0.010159 0.009557 0.979956 0.000642 0.009844 0.010416 0.977424 0.000541 0.011619 0.026401 0.956740 0.001544 0.015314 0.195502 0.755959 0.011060 0.037480 0.491291 0.364785 0.025613 0.118311 0.305153 0.398160 0.071680 0.225008 0.253497 0.232647 0.213246 0.300610 0.156964 0.297876 0.144683 0.400477 0.179549 0.292514 0.319462 0.208475 Consensus sequence: HVBCCCCCCCCMHHHB Reverse complement motif 0.179549 0.319462 0.292514 0.208475 0.400477 0.297876 0.144683 0.156964 0.300610 0.232647 0.213246 0.253497 0.305153 0.071680 0.398160 0.225008 0.118311 0.364785 0.025613 0.491291 0.195502 0.011060 0.755959 0.037480 0.026401 0.001544 0.956740 0.015314 0.010416 0.000541 0.977424 0.011619 0.009557 0.000642 0.979956 0.009844 0.024633 0.001894 0.963314 0.010159 0.222728 0.007528 0.750532 0.019212 0.138035 0.114016 0.660416 0.087533 0.145641 0.146376 0.590572 0.117412 0.171276 0.172832 0.341901 0.313991 0.185528 0.215409 0.417538 0.181525 0.136946 0.135309 0.396508 0.331236 Consensus sequence: BHHDYGGGGGGGGBVD Alignment: BHHDYGGGGGGGGBVD -----GGGKGGGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Original Motif Original Motif Forward 8 8 0.034454 Species: Mus musculus Original motif 0.404007 0.395873 0.173319 0.026801 0.305977 0.215534 0.215359 0.263130 0.370148 0.250957 0.113088 0.265808 0.324336 0.229498 0.174679 0.271487 0.263563 0.137896 0.079217 0.519324 0.265762 0.222582 0.082555 0.429102 0.206721 0.288405 0.017851 0.487023 0.164361 0.236500 0.061051 0.538088 0.593344 0.348446 0.050304 0.007906 0.031328 0.947050 0.007032 0.014590 0.010428 0.956605 0.029142 0.003825 0.459636 0.207616 0.155368 0.177380 0.014573 0.964608 0.012209 0.008610 0.066291 0.918196 0.008729 0.006784 0.019488 0.866774 0.018897 0.094841 0.767405 0.104198 0.029234 0.099164 0.052494 0.772531 0.039832 0.135142 0.296085 0.243498 0.350935 0.109482 0.518843 0.226659 0.124784 0.129714 0.647901 0.019721 0.159901 0.172477 0.113912 0.231511 0.214864 0.439713 0.223117 0.310596 0.293328 0.172959 0.185557 0.487662 0.136321 0.190459 Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Reverse complement motif 0.185557 0.136321 0.487662 0.190459 0.223117 0.293328 0.310596 0.172959 0.439713 0.231511 0.214864 0.113912 0.172477 0.019721 0.159901 0.647901 0.129714 0.226659 0.124784 0.518843 0.296085 0.350935 0.243498 0.109482 0.052494 0.039832 0.772531 0.135142 0.099164 0.104198 0.029234 0.767405 0.019488 0.018897 0.866774 0.094841 0.066291 0.008729 0.918196 0.006784 0.014573 0.012209 0.964608 0.008610 0.177380 0.207616 0.155368 0.459636 0.010428 0.029142 0.956605 0.003825 0.031328 0.007032 0.947050 0.014590 0.007906 0.348446 0.050304 0.593344 0.538088 0.236500 0.061051 0.164361 0.487023 0.288405 0.017851 0.206721 0.429102 0.222582 0.082555 0.265762 0.519324 0.137896 0.079217 0.263563 0.271487 0.229498 0.174679 0.324336 0.265808 0.250957 0.113088 0.370148 0.263130 0.215534 0.215359 0.305977 0.026801 0.395873 0.173319 0.404007 Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH -------CCCCRCCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Reverse Complement Reverse Complement Forward 6 8 0.035125 Species: Mus musculus Original motif 0.211547 0.282708 0.203472 0.302273 0.141988 0.722437 0.054854 0.080721 0.032605 0.877172 0.012432 0.077792 0.115126 0.070606 0.781290 0.032979 0.003516 0.990021 0.002265 0.004198 0.004715 0.982482 0.009897 0.002906 0.001627 0.975937 0.001662 0.020774 0.262352 0.731732 0.002730 0.003187 0.005890 0.985756 0.002081 0.006273 0.022893 0.090460 0.649322 0.237324 0.023038 0.859949 0.037913 0.079101 0.567633 0.057394 0.166792 0.208181 0.176597 0.331265 0.125308 0.366830 0.183049 0.183774 0.226793 0.406384 Consensus sequence: HCCGCCCCCGCAHB Reverse complement motif 0.406384 0.183774 0.226793 0.183049 0.366830 0.331265 0.125308 0.176597 0.208181 0.057394 0.166792 0.567633 0.023038 0.037913 0.859949 0.079101 0.022893 0.649322 0.090460 0.237324 0.005890 0.002081 0.985756 0.006273 0.262352 0.002730 0.731732 0.003187 0.001627 0.001662 0.975937 0.020774 0.004715 0.009897 0.982482 0.002906 0.003516 0.002265 0.990021 0.004198 0.115126 0.781290 0.070606 0.032979 0.032605 0.012432 0.877172 0.077792 0.141988 0.054854 0.722437 0.080721 0.302273 0.282708 0.203472 0.211547 Consensus sequence: VHTGCGGGGGCGGH Alignment: VHTGCGGGGGCGGH -----GGGKGGGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Original Motif Original Motif Backward 8 8 0.037983 Species: Mus musculus Original motif 0.155386 0.223380 0.374454 0.246780 0.247106 0.159582 0.345111 0.248201 0.238889 0.258354 0.165304 0.337454 0.255612 0.489586 0.051621 0.203182 0.450100 0.545383 0.001071 0.003447 0.003704 0.991007 0.002456 0.002833 0.035504 0.001814 0.928129 0.034553 0.001494 0.991406 0.003414 0.003686 0.003045 0.990628 0.005182 0.001145 0.000990 0.963237 0.001215 0.034557 0.148016 0.838396 0.000666 0.012922 0.014261 0.905847 0.007200 0.072692 0.083394 0.270068 0.058368 0.588170 0.149141 0.286783 0.142802 0.421274 0.204851 0.347195 0.253356 0.194597 0.184442 0.299908 0.194408 0.321242 0.125793 0.380109 0.245318 0.248780 Consensus sequence: BDHHMCGCCCCCTHVBB Reverse complement motif 0.125793 0.245318 0.380109 0.248780 0.321242 0.299908 0.194408 0.184442 0.204851 0.253356 0.347195 0.194597 0.421274 0.286783 0.142802 0.149141 0.588170 0.270068 0.058368 0.083394 0.014261 0.007200 0.905847 0.072692 0.148016 0.000666 0.838396 0.012922 0.000990 0.001215 0.963237 0.034557 0.003045 0.005182 0.990628 0.001145 0.001494 0.003414 0.991406 0.003686 0.035504 0.928129 0.001814 0.034553 0.003704 0.002456 0.991007 0.002833 0.450100 0.001071 0.545383 0.003447 0.255612 0.051621 0.489586 0.203182 0.337454 0.258354 0.165304 0.238889 0.247106 0.345111 0.159582 0.248201 0.155386 0.374454 0.223380 0.246780 Consensus sequence: BVVHAGGGGGCGRDHHB Alignment: BDHHMCGCCCCCTHVBB --CCCCRCCC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00024 Glis2_primary Reverse Complement Reverse Complement Forward 3 8 0.038765 Species: Mus musculus Original motif 0.135895 0.314811 0.129804 0.419490 0.379294 0.148356 0.125349 0.347001 0.331058 0.171563 0.156431 0.340948 0.238325 0.268940 0.259195 0.233540 0.014812 0.072844 0.774496 0.137848 0.826050 0.107559 0.058965 0.007426 0.013657 0.965452 0.008273 0.012618 0.011951 0.975704 0.007210 0.005135 0.015560 0.961676 0.004028 0.018736 0.010295 0.971668 0.003618 0.014418 0.087168 0.805495 0.002118 0.105220 0.098937 0.760880 0.010017 0.130166 0.492579 0.177017 0.171719 0.158685 0.160142 0.327745 0.192170 0.319943 0.484858 0.086830 0.273852 0.154461 0.266100 0.086868 0.363661 0.283371 Consensus sequence: HHHVGACCCCCCVBRD Reverse complement motif 0.266100 0.363661 0.086868 0.283371 0.154461 0.086830 0.273852 0.484858 0.160142 0.192170 0.327745 0.319943 0.158685 0.177017 0.171719 0.492579 0.098937 0.010017 0.760880 0.130166 0.087168 0.002118 0.805495 0.105220 0.010295 0.003618 0.971668 0.014418 0.015560 0.004028 0.961676 0.018736 0.011951 0.007210 0.975704 0.005135 0.013657 0.008273 0.965452 0.012618 0.007426 0.107559 0.058965 0.826050 0.014812 0.774496 0.072844 0.137848 0.238325 0.259195 0.268940 0.233540 0.340948 0.171563 0.156431 0.331058 0.347001 0.148356 0.125349 0.379294 0.419490 0.314811 0.129804 0.135895 Consensus sequence: HKBBGGGGGGTCVHHH Alignment: HKBBGGGGGGTCVHHH --GGGKGGGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_secondary Original Motif Original Motif Forward 3 8 0.044983 Species: Mus musculus Original motif 0.316572 0.278382 0.152556 0.252490 0.167141 0.257034 0.259894 0.315931 0.175523 0.325956 0.259996 0.238525 0.165052 0.385677 0.239449 0.209822 0.069489 0.782718 0.072454 0.075339 0.049943 0.800636 0.031988 0.117433 0.223382 0.060306 0.552691 0.163621 0.072944 0.818252 0.034406 0.074398 0.070535 0.845127 0.062712 0.021626 0.031035 0.859354 0.055424 0.054187 0.063668 0.798503 0.067274 0.070554 0.348488 0.030697 0.197179 0.423636 0.307220 0.256470 0.181009 0.255301 0.460933 0.285057 0.090258 0.163752 0.315798 0.228431 0.171135 0.284637 0.374527 0.268328 0.198810 0.158335 Consensus sequence: HBBBCCGCCCCWHHHV Reverse complement motif 0.158335 0.268328 0.198810 0.374527 0.284637 0.228431 0.171135 0.315798 0.163752 0.285057 0.090258 0.460933 0.255301 0.256470 0.181009 0.307220 0.423636 0.030697 0.197179 0.348488 0.063668 0.067274 0.798503 0.070554 0.031035 0.055424 0.859354 0.054187 0.070535 0.062712 0.845127 0.021626 0.072944 0.034406 0.818252 0.074398 0.223382 0.552691 0.060306 0.163621 0.049943 0.031988 0.800636 0.117433 0.069489 0.072454 0.782718 0.075339 0.165052 0.239449 0.385677 0.209822 0.175523 0.259996 0.325956 0.238525 0.315931 0.257034 0.259894 0.167141 0.252490 0.278382 0.152556 0.316572 Consensus sequence: BHHHWGGGGCGGBBVH Alignment: HBBBCCGCCCCWHHHV --CCCCRCCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Reverse Complement Reverse Complement Backward 7 8 0.044997 Species: Mus musculus Original motif 0.168550 0.345968 0.396524 0.088958 0.038113 0.360882 0.114042 0.486963 0.349356 0.180599 0.051416 0.418629 0.258773 0.332518 0.244932 0.163778 0.371663 0.208591 0.263136 0.156609 0.225440 0.321741 0.175932 0.276887 0.100827 0.656850 0.018644 0.223679 0.494140 0.155427 0.327424 0.023009 0.105642 0.805846 0.027712 0.060800 0.065110 0.845072 0.058046 0.031772 0.649343 0.110180 0.180680 0.059797 0.064269 0.853604 0.066860 0.015268 0.437421 0.533797 0.016833 0.011948 0.121694 0.787708 0.016177 0.074421 0.625382 0.066925 0.266070 0.041623 0.117819 0.608153 0.165139 0.108889 0.145639 0.102001 0.604926 0.147434 0.521188 0.184986 0.064607 0.229219 0.180371 0.274237 0.096591 0.448801 0.071055 0.455813 0.332817 0.140315 0.084503 0.199982 0.448293 0.267222 0.389451 0.169545 0.155507 0.285497 0.424314 0.227621 0.101210 0.246855 Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Reverse complement motif 0.246855 0.227621 0.101210 0.424314 0.285497 0.169545 0.155507 0.389451 0.084503 0.448293 0.199982 0.267222 0.071055 0.332817 0.455813 0.140315 0.448801 0.274237 0.096591 0.180371 0.229219 0.184986 0.064607 0.521188 0.145639 0.604926 0.102001 0.147434 0.117819 0.165139 0.608153 0.108889 0.041623 0.066925 0.266070 0.625382 0.121694 0.016177 0.787708 0.074421 0.437421 0.016833 0.533797 0.011948 0.064269 0.066860 0.853604 0.015268 0.059797 0.110180 0.180680 0.649343 0.065110 0.058046 0.845072 0.031772 0.105642 0.027712 0.805846 0.060800 0.023009 0.155427 0.327424 0.494140 0.100827 0.018644 0.656850 0.223679 0.225440 0.175932 0.321741 0.276887 0.156609 0.208591 0.263136 0.371663 0.258773 0.244932 0.332518 0.163778 0.418629 0.180599 0.051416 0.349356 0.486963 0.360882 0.114042 0.038113 0.168550 0.396524 0.345968 0.088958 Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV Alignment: HHBSHTCGTGRGTGGKGDBVWMV ---------GGGKGGGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Original Motif Original Motif Forward 5 8 0.045206 Species: Mus musculus Original motif 0.150668 0.131779 0.245665 0.471887 0.316817 0.287314 0.150829 0.245040 0.256473 0.409066 0.109700 0.224761 0.210646 0.220222 0.345010 0.224122 0.166679 0.508939 0.081676 0.242705 0.049351 0.759380 0.088489 0.102780 0.047598 0.785546 0.121957 0.044898 0.004606 0.944933 0.034696 0.015764 0.040252 0.050652 0.890382 0.018713 0.003038 0.913699 0.022449 0.060814 0.028672 0.941477 0.012276 0.017575 0.635243 0.139731 0.110495 0.114531 0.240016 0.385948 0.182848 0.191188 0.210430 0.274127 0.085171 0.430272 0.088118 0.454598 0.208989 0.248295 0.181269 0.265028 0.149023 0.404680 0.101070 0.252682 0.368542 0.277706 Consensus sequence: DHHBCCCCGCCAHHBHB Reverse complement motif 0.101070 0.368542 0.252682 0.277706 0.404680 0.265028 0.149023 0.181269 0.088118 0.208989 0.454598 0.248295 0.430272 0.274127 0.085171 0.210430 0.240016 0.182848 0.385948 0.191188 0.114531 0.139731 0.110495 0.635243 0.028672 0.012276 0.941477 0.017575 0.003038 0.022449 0.913699 0.060814 0.040252 0.890382 0.050652 0.018713 0.004606 0.034696 0.944933 0.015764 0.047598 0.121957 0.785546 0.044898 0.049351 0.088489 0.759380 0.102780 0.166679 0.081676 0.508939 0.242705 0.210646 0.345010 0.220222 0.224122 0.256473 0.109700 0.409066 0.224761 0.245040 0.287314 0.150829 0.316817 0.471887 0.131779 0.245665 0.150668 Consensus sequence: BHBHDTGGCGGGGBDHD Alignment: DHHBCCCCGCCAHHBHB ----CCCCRCCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 7 Motif name: Motif 7 Original motif 1.000000 0.000000 0.000000 0.000000 0.000000 0.494370 0.505630 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.385035 0.614965 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: ASASAGAA Reserve complement motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.614965 0.385035 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.505630 0.494370 0.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: TTCTSTST ************************************************************************ Best Matches for Motif ID 7 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Original Motif Original Motif Forward 6 8 0.000000 Species: Mus musculus Original motif 0.151572 0.262753 0.258275 0.327401 0.221834 0.113385 0.275380 0.389400 0.297769 0.136928 0.134678 0.430625 0.270099 0.110415 0.271106 0.348380 0.265471 0.090253 0.223340 0.420936 0.616582 0.090091 0.171960 0.121367 0.197318 0.107541 0.406904 0.288237 0.798258 0.046950 0.001406 0.153385 0.003195 0.002516 0.989707 0.004582 0.991503 0.002748 0.002617 0.003132 0.005015 0.002764 0.003026 0.989195 0.948394 0.008932 0.001344 0.041330 0.973109 0.004100 0.004081 0.018710 0.040365 0.113905 0.828185 0.017545 0.736608 0.130524 0.113464 0.019404 0.415921 0.106101 0.316613 0.161365 0.376582 0.170927 0.155572 0.296919 0.137731 0.197151 0.211055 0.454064 0.324853 0.122747 0.246107 0.306293 0.462490 0.207311 0.159392 0.170807 0.380420 0.188972 0.311990 0.118618 0.222178 0.157873 0.380486 0.239463 Consensus sequence: BDHDDADAGATAAGADHBDHVD Reverse complement motif 0.222178 0.380486 0.157873 0.239463 0.118618 0.188972 0.311990 0.380420 0.170807 0.207311 0.159392 0.462490 0.306293 0.122747 0.246107 0.324853 0.454064 0.197151 0.211055 0.137731 0.296919 0.170927 0.155572 0.376582 0.161365 0.106101 0.316613 0.415921 0.019404 0.130524 0.113464 0.736608 0.040365 0.828185 0.113905 0.017545 0.018710 0.004100 0.004081 0.973109 0.041330 0.008932 0.001344 0.948394 0.989195 0.002764 0.003026 0.005015 0.003132 0.002748 0.002617 0.991503 0.003195 0.989707 0.002516 0.004582 0.153385 0.046950 0.001406 0.798258 0.197318 0.406904 0.107541 0.288237 0.121367 0.090091 0.171960 0.616582 0.420936 0.090253 0.223340 0.265471 0.348380 0.110415 0.271106 0.270099 0.430625 0.136928 0.134678 0.297769 0.389400 0.113385 0.275380 0.221834 0.327401 0.262753 0.258275 0.151572 Consensus sequence: HBHDVHDTCTTATCTHTDDHDV Alignment: BDHDDADAGATAAGADHBDHVD -----ASASAGAA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00040 Irf5_secondary Original Motif Original Motif Forward 4 8 0.005624 Species: Mus musculus Original motif 0.160739 0.237732 0.225630 0.375899 0.231003 0.186804 0.122026 0.460167 0.282260 0.197034 0.288737 0.231969 0.746029 0.055630 0.083427 0.114914 0.169536 0.340063 0.148794 0.341606 0.086576 0.827589 0.034986 0.050849 0.021280 0.012938 0.955490 0.010292 0.930476 0.013781 0.047798 0.007945 0.002126 0.038171 0.948134 0.011570 0.959483 0.009871 0.015462 0.015184 0.495380 0.028946 0.408360 0.067314 0.145964 0.186198 0.031072 0.636767 0.200379 0.206354 0.151807 0.441460 0.171996 0.390086 0.220850 0.217068 0.208281 0.322628 0.291771 0.177321 Consensus sequence: BHDAHCGAGARTHBV Reverse complement motif 0.208281 0.291771 0.322628 0.177321 0.171996 0.220850 0.390086 0.217068 0.441460 0.206354 0.151807 0.200379 0.636767 0.186198 0.031072 0.145964 0.067314 0.028946 0.408360 0.495380 0.015184 0.009871 0.015462 0.959483 0.002126 0.948134 0.038171 0.011570 0.007945 0.013781 0.047798 0.930476 0.021280 0.955490 0.012938 0.010292 0.086576 0.034986 0.827589 0.050849 0.341606 0.340063 0.148794 0.169536 0.114914 0.055630 0.083427 0.746029 0.282260 0.288737 0.197034 0.231969 0.460167 0.186804 0.122026 0.231003 0.375899 0.237732 0.225630 0.160739 Consensus sequence: VBHAKTCTCGHTHHV Alignment: BHDAHCGAGARTHBV ---ASASAGAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00101 Sox12_secondary Original Motif Original Motif Backward 7 8 0.012060 Species: Mus musculus Original motif 0.378898 0.318901 0.205859 0.096341 0.352524 0.321236 0.224504 0.101736 0.323551 0.182056 0.210897 0.283496 0.135539 0.325230 0.208031 0.331200 0.663106 0.055471 0.154459 0.126963 0.051748 0.292567 0.537307 0.118378 0.886489 0.042361 0.035742 0.035408 0.043647 0.688744 0.094358 0.173252 0.882052 0.039818 0.018899 0.059231 0.864171 0.036011 0.068363 0.031455 0.790158 0.046868 0.041594 0.121379 0.087447 0.143905 0.707798 0.060849 0.295919 0.132479 0.485703 0.085899 0.653156 0.133004 0.110012 0.103828 0.351764 0.131771 0.217730 0.298736 0.203977 0.196773 0.099958 0.499292 Consensus sequence: VVDBASACAAAGRADH Reverse complement motif 0.499292 0.196773 0.099958 0.203977 0.298736 0.131771 0.217730 0.351764 0.103828 0.133004 0.110012 0.653156 0.295919 0.485703 0.132479 0.085899 0.087447 0.707798 0.143905 0.060849 0.121379 0.046868 0.041594 0.790158 0.031455 0.036011 0.068363 0.864171 0.059231 0.039818 0.018899 0.882052 0.043647 0.094358 0.688744 0.173252 0.035408 0.042361 0.035742 0.886489 0.051748 0.537307 0.292567 0.118378 0.126963 0.055471 0.154459 0.663106 0.331200 0.325230 0.208031 0.135539 0.283496 0.182056 0.210897 0.323551 0.101736 0.321236 0.224504 0.352524 0.096341 0.318901 0.205859 0.378898 Consensus sequence: HDTMCTTTGTSTVDBB Alignment: VVDBASACAAAGRADH --ASASAGAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00018 Irf4_secondary Original Motif Reverse Complement Forward 4 8 0.017471 Species: Mus musculus Original motif 0.288101 0.247588 0.287461 0.176850 0.187625 0.276525 0.352820 0.183030 0.175230 0.300094 0.203295 0.321380 0.564519 0.107594 0.098018 0.229869 0.150412 0.310868 0.054960 0.483760 0.034907 0.015505 0.034843 0.914745 0.041776 0.885897 0.032309 0.040017 0.046210 0.168474 0.066613 0.718702 0.031764 0.913321 0.024478 0.030437 0.191755 0.029057 0.754998 0.024190 0.206291 0.097100 0.623727 0.072881 0.311511 0.037435 0.173101 0.477953 0.205101 0.316738 0.081628 0.396533 0.243888 0.196473 0.292453 0.267186 0.167980 0.404608 0.259107 0.168305 Consensus sequence: VVBAYTCTCGGWHDB Reverse complement motif 0.167980 0.259107 0.404608 0.168305 0.243888 0.292453 0.196473 0.267186 0.396533 0.316738 0.081628 0.205101 0.477953 0.037435 0.173101 0.311511 0.206291 0.623727 0.097100 0.072881 0.191755 0.754998 0.029057 0.024190 0.031764 0.024478 0.913321 0.030437 0.718702 0.168474 0.066613 0.046210 0.041776 0.032309 0.885897 0.040017 0.914745 0.015505 0.034843 0.034907 0.483760 0.310868 0.054960 0.150412 0.229869 0.107594 0.098018 0.564519 0.321380 0.300094 0.203295 0.175230 0.187625 0.352820 0.276525 0.183030 0.176850 0.247588 0.287461 0.288101 Consensus sequence: BHHWCCGAGAMTVVB Alignment: BHHWCCGAGAMTVVB ---ASASAGAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00090 Elf3_primary Reverse Complement Reverse Complement Forward 5 8 0.018291 Species: Mus musculus Original motif 0.338918 0.138284 0.180304 0.342493 0.614328 0.046536 0.066645 0.272492 0.248636 0.405469 0.125813 0.220081 0.389942 0.368832 0.198252 0.042975 0.473107 0.443315 0.064884 0.018693 0.032285 0.005365 0.952727 0.009624 0.021365 0.006895 0.955827 0.015913 0.976258 0.006536 0.010998 0.006209 0.892027 0.007456 0.003678 0.096839 0.433755 0.037682 0.520487 0.008076 0.098931 0.159997 0.023691 0.717381 0.423164 0.077419 0.201004 0.298413 0.572262 0.158763 0.164963 0.104012 Consensus sequence: DAHMMGGAARTDA Reverse complement motif 0.104012 0.158763 0.164963 0.572262 0.298413 0.077419 0.201004 0.423164 0.717381 0.159997 0.023691 0.098931 0.433755 0.520487 0.037682 0.008076 0.096839 0.007456 0.003678 0.892027 0.006209 0.006536 0.010998 0.976258 0.021365 0.955827 0.006895 0.015913 0.032285 0.952727 0.005365 0.009624 0.018693 0.443315 0.064884 0.473107 0.042975 0.368832 0.198252 0.389942 0.248636 0.125813 0.405469 0.220081 0.272492 0.046536 0.066645 0.614328 0.342493 0.138284 0.180304 0.338918 Consensus sequence: TDAMTTCCYYDTD Alignment: TDAMTTCCYYDTD ----TTCTSTST- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00004 Sox14_secondary Original Motif Original Motif Forward 2 8 0.018535 Species: Mus musculus Original motif 0.191264 0.345487 0.212142 0.251106 0.105033 0.130838 0.338939 0.425191 0.126539 0.333031 0.233364 0.307066 0.641901 0.114039 0.195933 0.048127 0.153349 0.532437 0.272427 0.041786 0.934680 0.009395 0.019668 0.036257 0.013611 0.927298 0.037729 0.021361 0.964293 0.018416 0.006724 0.010568 0.962181 0.018004 0.014592 0.005223 0.229593 0.016301 0.007632 0.746474 0.268456 0.030092 0.519349 0.182102 0.201484 0.107350 0.588833 0.102334 0.253726 0.259057 0.242924 0.244293 0.168663 0.203061 0.347898 0.280378 0.175853 0.339716 0.301724 0.182707 Consensus sequence: BKBASACAATRGHBB Reverse complement motif 0.175853 0.301724 0.339716 0.182707 0.168663 0.347898 0.203061 0.280378 0.253726 0.242924 0.259057 0.244293 0.201484 0.588833 0.107350 0.102334 0.268456 0.519349 0.030092 0.182102 0.746474 0.016301 0.007632 0.229593 0.005223 0.018004 0.014592 0.962181 0.010568 0.018416 0.006724 0.964293 0.013611 0.037729 0.927298 0.021361 0.036257 0.009395 0.019668 0.934680 0.153349 0.272427 0.532437 0.041786 0.048127 0.114039 0.195933 0.641901 0.126539 0.233364 0.333031 0.307066 0.425191 0.130838 0.338939 0.105033 0.191264 0.212142 0.345487 0.251106 Consensus sequence: BBDCMATTGTSTBRB Alignment: BKBASACAATRGHBB -ASASAGAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Original Motif Original Motif Backward 4 8 0.018787 Species: Mus musculus Original motif 0.351812 0.238467 0.143954 0.265768 0.195246 0.235838 0.281473 0.287443 0.349478 0.172616 0.210739 0.267167 0.484061 0.110438 0.173131 0.232370 0.276692 0.070713 0.479604 0.172991 0.859124 0.044167 0.083951 0.012758 0.975608 0.002029 0.002285 0.020079 0.006422 0.978485 0.007124 0.007969 0.987489 0.003025 0.002868 0.006617 0.987739 0.005463 0.002730 0.004067 0.693013 0.004067 0.002445 0.300475 0.189100 0.003677 0.801408 0.005814 0.352090 0.072517 0.567737 0.007656 0.542316 0.176545 0.192768 0.088371 0.196382 0.304176 0.205985 0.293457 0.289415 0.201358 0.182937 0.326290 0.385801 0.216362 0.152363 0.245475 Consensus sequence: HBDDRAACAAAGRABHH Reverse complement motif 0.245475 0.216362 0.152363 0.385801 0.326290 0.201358 0.182937 0.289415 0.196382 0.205985 0.304176 0.293457 0.088371 0.176545 0.192768 0.542316 0.352090 0.567737 0.072517 0.007656 0.189100 0.801408 0.003677 0.005814 0.300475 0.004067 0.002445 0.693013 0.004067 0.005463 0.002730 0.987739 0.006617 0.003025 0.002868 0.987489 0.006422 0.007124 0.978485 0.007969 0.020079 0.002029 0.002285 0.975608 0.012758 0.044167 0.083951 0.859124 0.276692 0.479604 0.070713 0.172991 0.232370 0.110438 0.173131 0.484061 0.267167 0.172616 0.210739 0.349478 0.287443 0.235838 0.281473 0.195246 0.265768 0.238467 0.143954 0.351812 Consensus sequence: HHBTMCTTTGTTMDDVH Alignment: HBDDRAACAAAGRABHH ------ASASAGAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Original Motif Original Motif Forward 7 8 0.018825 Species: Mus musculus Original motif 0.427843 0.231210 0.119424 0.221523 0.196506 0.239531 0.304906 0.259057 0.302488 0.156922 0.290190 0.250401 0.433872 0.149126 0.196496 0.220506 0.258426 0.076511 0.475100 0.189963 0.841714 0.046453 0.099915 0.011918 0.983853 0.001612 0.001362 0.013174 0.003460 0.982032 0.005728 0.008780 0.989743 0.002253 0.002020 0.005984 0.990761 0.003397 0.002843 0.003000 0.770864 0.003540 0.001549 0.224048 0.235342 0.002598 0.757383 0.004677 0.371426 0.089574 0.529959 0.009040 0.480804 0.196949 0.240413 0.081833 0.187158 0.355102 0.216599 0.241142 0.248006 0.232182 0.157452 0.362360 0.403367 0.177684 0.164649 0.254300 Consensus sequence: HBDDDAACAAAGRVBHH Reverse complement motif 0.254300 0.177684 0.164649 0.403367 0.362360 0.232182 0.157452 0.248006 0.187158 0.216599 0.355102 0.241142 0.081833 0.196949 0.240413 0.480804 0.371426 0.529959 0.089574 0.009040 0.235342 0.757383 0.002598 0.004677 0.224048 0.003540 0.001549 0.770864 0.003000 0.003397 0.002843 0.990761 0.005984 0.002253 0.002020 0.989743 0.003460 0.005728 0.982032 0.008780 0.013174 0.001612 0.001362 0.983853 0.011918 0.046453 0.099915 0.841714 0.258426 0.475100 0.076511 0.189963 0.220506 0.149126 0.196496 0.433872 0.250401 0.156922 0.290190 0.302488 0.196506 0.304906 0.239531 0.259057 0.221523 0.231210 0.119424 0.427843 Consensus sequence: HHBBMCTTTGTTHDDBH Alignment: HBDDDAACAAAGRVBHH ------ASASAGAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00409 Elf5 Original Motif Original Motif Forward 3 8 0.019261 Species: Mus musculus Original motif 0.179167 0.229135 0.279326 0.312372 0.421239 0.102900 0.145609 0.330252 0.791978 0.009721 0.028951 0.169350 0.237609 0.375543 0.161526 0.225321 0.145845 0.325411 0.516045 0.012699 0.431007 0.516333 0.051679 0.000982 0.005750 0.001408 0.990928 0.001915 0.002025 0.001886 0.992021 0.004068 0.986405 0.001705 0.001039 0.010851 0.950652 0.003619 0.000482 0.045248 0.165221 0.013897 0.819076 0.001805 0.032042 0.049374 0.014632 0.903953 0.285325 0.108010 0.127373 0.479292 0.366131 0.141246 0.290661 0.201963 Consensus sequence: BWAHSMGGAAGTWD Reverse complement motif 0.201963 0.141246 0.290661 0.366131 0.479292 0.108010 0.127373 0.285325 0.903953 0.049374 0.014632 0.032042 0.165221 0.819076 0.013897 0.001805 0.045248 0.003619 0.000482 0.950652 0.010851 0.001705 0.001039 0.986405 0.002025 0.992021 0.001886 0.004068 0.005750 0.990928 0.001408 0.001915 0.431007 0.051679 0.516333 0.000982 0.145845 0.516045 0.325411 0.012699 0.237609 0.161526 0.375543 0.225321 0.169350 0.009721 0.028951 0.791978 0.330252 0.102900 0.145609 0.421239 0.312372 0.229135 0.279326 0.179167 Consensus sequence: DWACTTCCRSDTWV Alignment: BWAHSMGGAAGTWD --ASASAGAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00100 Gata6_primary Reverse Complement Reverse Complement Backward 4 8 0.019268 Species: Mus musculus Original motif 0.349779 0.104807 0.163845 0.381569 0.379507 0.241361 0.162996 0.216137 0.301570 0.171595 0.216294 0.310541 0.383341 0.282970 0.194814 0.138875 0.222790 0.153121 0.314812 0.309278 0.547714 0.112442 0.004050 0.335794 0.003590 0.001126 0.990090 0.005194 0.990511 0.001699 0.001957 0.005833 0.002023 0.005588 0.002297 0.990092 0.890935 0.001908 0.001081 0.106076 0.944095 0.006031 0.009953 0.039921 0.034723 0.215453 0.721767 0.028058 0.515733 0.239041 0.204426 0.040800 0.386668 0.116787 0.252701 0.243844 0.210568 0.133136 0.175912 0.480385 0.219610 0.214405 0.172518 0.393466 0.267885 0.223946 0.338950 0.169218 Consensus sequence: DHDVDWGATAAGADDHV Reverse complement motif 0.267885 0.338950 0.223946 0.169218 0.393466 0.214405 0.172518 0.219610 0.480385 0.133136 0.175912 0.210568 0.243844 0.116787 0.252701 0.386668 0.040800 0.239041 0.204426 0.515733 0.034723 0.721767 0.215453 0.028058 0.039921 0.006031 0.009953 0.944095 0.106076 0.001908 0.001081 0.890935 0.990092 0.005588 0.002297 0.002023 0.005833 0.001699 0.001957 0.990511 0.003590 0.990090 0.001126 0.005194 0.335794 0.112442 0.004050 0.547714 0.222790 0.314812 0.153121 0.309278 0.138875 0.282970 0.194814 0.383341 0.310541 0.171595 0.216294 0.301570 0.216137 0.241361 0.162996 0.379507 0.381569 0.104807 0.163845 0.349779 Consensus sequence: VHDDTCTTATCWHBDHD Alignment: VHDDTCTTATCWHBDHD ------TTCTSTST--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 8 Motif name: Motif 8 Original motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.391911 0.000000 0.000000 0.608089 0.497352 0.000000 0.000000 0.502648 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.429947 0.000000 0.000000 0.570053 Consensus sequence: TTTWWAAW Reserve complement motif 0.570053 0.000000 0.000000 0.429947 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.502648 0.000000 0.000000 0.497352 0.608089 0.000000 0.000000 0.391911 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: WTTWWAAA ************************************************************************ Best Matches for Motif ID 8 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_primary Original Motif Reverse Complement Forward 8 8 0.011349 Species: Mus musculus Original motif 0.323208 0.152915 0.185111 0.338766 0.428132 0.056109 0.099487 0.416272 0.659386 0.039965 0.035805 0.264843 0.647143 0.049206 0.078984 0.224667 0.208834 0.076592 0.071631 0.642943 0.341077 0.003865 0.649511 0.005547 0.016627 0.001866 0.001715 0.979792 0.952319 0.045294 0.000870 0.001516 0.988834 0.004620 0.000720 0.005826 0.989346 0.001005 0.006467 0.003182 0.001093 0.784230 0.001235 0.213442 0.991209 0.002017 0.001737 0.005037 0.801581 0.037084 0.023060 0.138274 0.528554 0.089350 0.107501 0.274595 0.208802 0.268646 0.368022 0.154530 0.280218 0.221367 0.340497 0.157918 0.146611 0.250725 0.293524 0.309140 Consensus sequence: DWAATRTAAACAAWVVB Reverse complement motif 0.309140 0.250725 0.293524 0.146611 0.280218 0.340497 0.221367 0.157918 0.208802 0.368022 0.268646 0.154530 0.274595 0.089350 0.107501 0.528554 0.138274 0.037084 0.023060 0.801581 0.005037 0.002017 0.001737 0.991209 0.001093 0.001235 0.784230 0.213442 0.003182 0.001005 0.006467 0.989346 0.005826 0.004620 0.000720 0.988834 0.001516 0.045294 0.000870 0.952319 0.979792 0.001866 0.001715 0.016627 0.341077 0.649511 0.003865 0.005547 0.642943 0.076592 0.071631 0.208834 0.224667 0.049206 0.078984 0.647143 0.264843 0.039965 0.035805 0.659386 0.416272 0.056109 0.099487 0.428132 0.338766 0.152915 0.185111 0.323208 Consensus sequence: VVVWTTGTTTAMATTWD Alignment: VVVWTTGTTTAMATTWD -------TTTWWAAW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_primary Original Motif Reverse Complement Backward 5 8 0.014295 Species: Mus musculus Original motif 0.335487 0.205062 0.128957 0.330494 0.411635 0.179625 0.175701 0.233038 0.412976 0.128602 0.091890 0.366532 0.608396 0.079002 0.107142 0.205460 0.433474 0.035203 0.153143 0.378180 0.087552 0.005003 0.894586 0.012858 0.004459 0.038951 0.001109 0.955481 0.924470 0.068560 0.001165 0.005805 0.920483 0.070039 0.001674 0.007805 0.988335 0.001902 0.003155 0.006608 0.001527 0.656726 0.002699 0.339047 0.987505 0.001810 0.004336 0.006349 0.719584 0.065184 0.050384 0.164848 0.535389 0.099997 0.102849 0.261764 0.245215 0.272017 0.301499 0.181269 0.306107 0.209040 0.248687 0.236166 0.223744 0.278668 0.251931 0.245657 Consensus sequence: HHWAWGTAAAYAAAVDB Reverse complement motif 0.223744 0.251931 0.278668 0.245657 0.236166 0.209040 0.248687 0.306107 0.245215 0.301499 0.272017 0.181269 0.261764 0.099997 0.102849 0.535389 0.164848 0.065184 0.050384 0.719584 0.006349 0.001810 0.004336 0.987505 0.001527 0.002699 0.656726 0.339047 0.006608 0.001902 0.003155 0.988335 0.007805 0.070039 0.001674 0.920483 0.005805 0.068560 0.001165 0.924470 0.955481 0.038951 0.001109 0.004459 0.087552 0.894586 0.005003 0.012858 0.378180 0.035203 0.153143 0.433474 0.205460 0.079002 0.107142 0.608396 0.366532 0.128602 0.091890 0.412976 0.233038 0.179625 0.175701 0.411635 0.330494 0.205062 0.128957 0.335487 Consensus sequence: BDVTTTKTTTACWTWHH Alignment: BDVTTTKTTTACWTWHH -----TTTWWAAW---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00114 Homez Reverse Complement Reverse Complement Forward 1 8 0.016494 Species: Mus musculus Original motif 0.585235 0.056880 0.174898 0.182987 0.344783 0.171238 0.144379 0.339600 0.496888 0.112442 0.086669 0.304001 0.457408 0.134777 0.032789 0.375026 0.342717 0.420568 0.171418 0.065297 0.872988 0.030946 0.004203 0.091862 0.006581 0.013120 0.006495 0.973804 0.036193 0.946961 0.004377 0.012469 0.014767 0.005226 0.966106 0.013901 0.208700 0.008264 0.021875 0.761161 0.037957 0.018882 0.028895 0.914266 0.157997 0.026546 0.021365 0.794092 0.139814 0.136272 0.117987 0.605927 0.125467 0.233302 0.183071 0.458161 0.523941 0.191122 0.050126 0.234811 0.374984 0.049392 0.291831 0.283793 0.268235 0.165772 0.308515 0.257477 Consensus sequence: AHWWMATCGTTTTBADD Reverse complement motif 0.268235 0.308515 0.165772 0.257477 0.283793 0.049392 0.291831 0.374984 0.234811 0.191122 0.050126 0.523941 0.458161 0.233302 0.183071 0.125467 0.605927 0.136272 0.117987 0.139814 0.794092 0.026546 0.021365 0.157997 0.914266 0.018882 0.028895 0.037957 0.761161 0.008264 0.021875 0.208700 0.014767 0.966106 0.005226 0.013901 0.036193 0.004377 0.946961 0.012469 0.973804 0.013120 0.006495 0.006581 0.091862 0.030946 0.004203 0.872988 0.342717 0.171418 0.420568 0.065297 0.375026 0.134777 0.032789 0.457408 0.304001 0.112442 0.086669 0.496888 0.339600 0.171238 0.144379 0.344783 0.182987 0.056880 0.174898 0.585235 Consensus sequence: HDTVAAAACGATRWWHT Alignment: HDTVAAAACGATRWWHT WTTWWAAA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00262 Lhx1 Original Motif Reverse Complement Backward 8 8 0.016710 Species: Mus musculus Original motif 0.315209 0.366241 0.224448 0.094102 0.226797 0.179144 0.492088 0.101972 0.381904 0.174944 0.190109 0.253043 0.579946 0.093451 0.164863 0.161740 0.033857 0.165951 0.023937 0.776255 0.010562 0.080337 0.000382 0.908720 0.983678 0.007671 0.007262 0.001389 0.976701 0.001039 0.004283 0.017977 0.017977 0.004283 0.001039 0.976701 0.001389 0.007262 0.007671 0.983678 0.908720 0.000382 0.080337 0.010562 0.776255 0.023937 0.165951 0.033857 0.372268 0.146397 0.084885 0.396450 0.497647 0.117799 0.091325 0.293229 0.643159 0.113094 0.055630 0.188117 0.275637 0.292310 0.136698 0.295355 0.149905 0.181595 0.349326 0.319174 Consensus sequence: VVDATTAATTAAWWAHB Reverse complement motif 0.149905 0.349326 0.181595 0.319174 0.295355 0.292310 0.136698 0.275637 0.188117 0.113094 0.055630 0.643159 0.293229 0.117799 0.091325 0.497647 0.396450 0.146397 0.084885 0.372268 0.033857 0.023937 0.165951 0.776255 0.010562 0.000382 0.080337 0.908720 0.983678 0.007262 0.007671 0.001389 0.976701 0.004283 0.001039 0.017977 0.017977 0.001039 0.004283 0.976701 0.001389 0.007671 0.007262 0.983678 0.908720 0.080337 0.000382 0.010562 0.776255 0.165951 0.023937 0.033857 0.161740 0.093451 0.164863 0.579946 0.253043 0.174944 0.190109 0.381904 0.226797 0.492088 0.179144 0.101972 0.315209 0.224448 0.366241 0.094102 Consensus sequence: BHTWWTTAATTAATDVV Alignment: BHTWWTTAATTAATDVV --TTTWWAAW------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00134 Hoxb13 Reverse Complement Original Motif Forward 6 8 0.016804 Species: Mus musculus Original motif 0.376100 0.272625 0.202253 0.149021 0.479072 0.116315 0.274952 0.129661 0.297412 0.328646 0.182054 0.191889 0.052067 0.771717 0.088083 0.088133 0.018222 0.666056 0.006952 0.308770 0.755568 0.122362 0.001339 0.120731 0.915413 0.001023 0.052340 0.031225 0.002612 0.028396 0.000695 0.968297 0.831092 0.001851 0.005615 0.161442 0.927869 0.001839 0.001169 0.069123 0.967747 0.009603 0.002871 0.019778 0.843186 0.073812 0.055868 0.027134 0.371084 0.143031 0.086222 0.399662 0.264976 0.212885 0.118960 0.403179 0.215633 0.345186 0.105518 0.333663 0.221910 0.297212 0.329310 0.151568 Consensus sequence: VRHCCAATAAAAWHHV Reverse complement motif 0.221910 0.329310 0.297212 0.151568 0.215633 0.105518 0.345186 0.333663 0.403179 0.212885 0.118960 0.264976 0.399662 0.143031 0.086222 0.371084 0.027134 0.073812 0.055868 0.843186 0.019778 0.009603 0.002871 0.967747 0.069123 0.001839 0.001169 0.927869 0.161442 0.001851 0.005615 0.831092 0.968297 0.028396 0.000695 0.002612 0.031225 0.001023 0.052340 0.915413 0.120731 0.122362 0.001339 0.755568 0.018222 0.006952 0.666056 0.308770 0.052067 0.088083 0.771717 0.088133 0.297412 0.182054 0.328646 0.191889 0.129661 0.116315 0.274952 0.479072 0.149021 0.272625 0.202253 0.376100 Consensus sequence: VDHWTTTTATTGGDKB Alignment: VRHCCAATAAAAWHHV -----WTTWWAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00188 Lmx1a Original Motif Reverse Complement Forward 3 8 0.016928 Species: Mus musculus Original motif 0.163027 0.506393 0.246327 0.084254 0.173471 0.211164 0.477036 0.138330 0.431859 0.182416 0.155298 0.230427 0.420560 0.127574 0.126915 0.324951 0.060842 0.128686 0.037075 0.773398 0.032236 0.035967 0.001358 0.930439 0.938541 0.008352 0.007051 0.046057 0.964464 0.001596 0.003362 0.030579 0.030579 0.003362 0.001596 0.964464 0.046057 0.007051 0.008352 0.938541 0.930439 0.001358 0.035967 0.032236 0.773398 0.037075 0.128686 0.060842 0.498149 0.057242 0.091924 0.352686 0.520755 0.121277 0.054120 0.303848 0.483290 0.175070 0.069683 0.271957 0.221557 0.366894 0.153619 0.257930 0.167920 0.342643 0.169856 0.319581 Consensus sequence: CVHHTTAATTAAWWWHB Reverse complement motif 0.167920 0.169856 0.342643 0.319581 0.221557 0.153619 0.366894 0.257930 0.271957 0.175070 0.069683 0.483290 0.303848 0.121277 0.054120 0.520755 0.352686 0.057242 0.091924 0.498149 0.060842 0.037075 0.128686 0.773398 0.032236 0.001358 0.035967 0.930439 0.938541 0.007051 0.008352 0.046057 0.964464 0.003362 0.001596 0.030579 0.030579 0.001596 0.003362 0.964464 0.046057 0.008352 0.007051 0.938541 0.930439 0.035967 0.001358 0.032236 0.773398 0.128686 0.037075 0.060842 0.324951 0.127574 0.126915 0.420560 0.230427 0.182416 0.155298 0.431859 0.173471 0.477036 0.211164 0.138330 0.163027 0.246327 0.506393 0.084254 Consensus sequence: BDWWWTTAATTAAHHVG Alignment: BDWWWTTAATTAAHHVG --TTTWWAAW------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00016 Sry_primary Original Motif Original Motif Backward 5 8 0.017254 Species: Mus musculus Original motif 0.173554 0.244647 0.248735 0.333064 0.317107 0.259459 0.118295 0.305139 0.240662 0.181192 0.247535 0.330610 0.431219 0.156611 0.141440 0.270729 0.958925 0.011290 0.006882 0.022903 0.049111 0.011065 0.012843 0.926981 0.072130 0.013140 0.006115 0.908615 0.917456 0.003886 0.069860 0.008798 0.008798 0.069860 0.003886 0.917456 0.908615 0.006115 0.013140 0.072130 0.926981 0.012843 0.011065 0.049111 0.022903 0.006882 0.011290 0.958925 0.422656 0.136248 0.266001 0.175095 0.336161 0.121946 0.177188 0.364705 0.247357 0.097153 0.248929 0.406561 0.246369 0.321670 0.222124 0.209837 Consensus sequence: BHDHATTATAATDDDV Reverse complement motif 0.246369 0.222124 0.321670 0.209837 0.406561 0.097153 0.248929 0.247357 0.364705 0.121946 0.177188 0.336161 0.175095 0.136248 0.266001 0.422656 0.958925 0.006882 0.011290 0.022903 0.049111 0.012843 0.011065 0.926981 0.072130 0.006115 0.013140 0.908615 0.917456 0.069860 0.003886 0.008798 0.008798 0.003886 0.069860 0.917456 0.908615 0.013140 0.006115 0.072130 0.926981 0.011065 0.012843 0.049111 0.022903 0.011290 0.006882 0.958925 0.270729 0.156611 0.141440 0.431219 0.330610 0.181192 0.247535 0.240662 0.305139 0.259459 0.118295 0.317107 0.333064 0.244647 0.248735 0.173554 Consensus sequence: VDDDATTATAATHDHV Alignment: BHDHATTATAATDDDV ----TTTWWAAW---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00023 Sox30_secondary Reverse Complement Original Motif Forward 5 8 0.017893 Species: Mus musculus Original motif 0.173761 0.207736 0.102555 0.515948 0.456698 0.266382 0.120798 0.156122 0.349258 0.192281 0.201358 0.257102 0.152662 0.217849 0.403406 0.226082 0.771968 0.111771 0.026653 0.089608 0.079075 0.035514 0.042471 0.842940 0.030350 0.057504 0.035690 0.876456 0.844347 0.061991 0.045594 0.048068 0.048068 0.045594 0.061991 0.844347 0.876456 0.035690 0.057504 0.030350 0.842940 0.042471 0.035514 0.079075 0.089608 0.026653 0.111771 0.771968 0.466958 0.292517 0.130394 0.110131 0.199144 0.413076 0.198324 0.189456 0.226568 0.226480 0.464079 0.082873 0.212759 0.253466 0.384995 0.148780 Consensus sequence: THDBATTATAATMVVV Reverse complement motif 0.212759 0.384995 0.253466 0.148780 0.226568 0.464079 0.226480 0.082873 0.199144 0.198324 0.413076 0.189456 0.110131 0.292517 0.130394 0.466958 0.771968 0.026653 0.111771 0.089608 0.079075 0.042471 0.035514 0.842940 0.030350 0.035690 0.057504 0.876456 0.844347 0.045594 0.061991 0.048068 0.048068 0.061991 0.045594 0.844347 0.876456 0.057504 0.035690 0.030350 0.842940 0.035514 0.042471 0.079075 0.089608 0.111771 0.026653 0.771968 0.152662 0.403406 0.217849 0.226082 0.257102 0.192281 0.201358 0.349258 0.156122 0.266382 0.120798 0.456698 0.515948 0.207736 0.102555 0.173761 Consensus sequence: VVVYATTATAATBDHA Alignment: THDBATTATAATMVVV ----WTTWWAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00173 Hoxc13 Reverse Complement Reverse Complement Forward 4 8 0.018066 Species: Mus musculus Original motif 0.329750 0.218875 0.126085 0.325290 0.359529 0.208886 0.161839 0.269746 0.422361 0.147886 0.154953 0.274800 0.109858 0.231755 0.365475 0.292912 0.026731 0.838331 0.133884 0.001054 0.001860 0.034063 0.001665 0.962411 0.018979 0.887508 0.000421 0.093092 0.394654 0.000419 0.598992 0.005935 0.001269 0.017200 0.000611 0.980919 0.897441 0.000397 0.003712 0.098450 0.958993 0.000593 0.000873 0.039541 0.981006 0.004963 0.001000 0.013032 0.645464 0.081310 0.051136 0.222090 0.298300 0.138406 0.094463 0.468832 0.158954 0.229153 0.156589 0.455305 0.325279 0.092193 0.241621 0.340907 Consensus sequence: HHDBCTCRTAAAAWHD Reverse complement motif 0.340907 0.092193 0.241621 0.325279 0.455305 0.229153 0.156589 0.158954 0.468832 0.138406 0.094463 0.298300 0.222090 0.081310 0.051136 0.645464 0.013032 0.004963 0.001000 0.981006 0.039541 0.000593 0.000873 0.958993 0.098450 0.000397 0.003712 0.897441 0.980919 0.017200 0.000611 0.001269 0.394654 0.598992 0.000419 0.005935 0.018979 0.000421 0.887508 0.093092 0.962411 0.034063 0.001665 0.001860 0.026731 0.133884 0.838331 0.001054 0.109858 0.365475 0.231755 0.292912 0.274800 0.147886 0.154953 0.422361 0.269746 0.208886 0.161839 0.359529 0.325290 0.218875 0.126085 0.329750 Consensus sequence: DHWTTTTAMGAGBDHH Alignment: DHWTTTTAMGAGBDHH ---WTTWWAAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00207 Hoxb9 Reverse Complement Reverse Complement Forward 4 8 0.018356 Species: Mus musculus Original motif 0.369205 0.191401 0.373182 0.066211 0.357429 0.160246 0.408701 0.073624 0.576965 0.069294 0.310696 0.043045 0.103797 0.127691 0.646641 0.121871 0.023188 0.657132 0.005598 0.314082 0.420260 0.543925 0.009350 0.026464 0.944117 0.003851 0.047375 0.004658 0.007642 0.006158 0.004106 0.982094 0.728623 0.003283 0.002505 0.265589 0.958302 0.002642 0.002614 0.036442 0.969909 0.004265 0.002650 0.023176 0.869075 0.011516 0.028466 0.090943 0.336102 0.198102 0.075230 0.390566 0.203557 0.271818 0.098338 0.426287 0.226605 0.448090 0.146026 0.179278 0.252426 0.177812 0.357334 0.212429 Consensus sequence: VRRGCMATAAAAHHHD Reverse complement motif 0.252426 0.357334 0.177812 0.212429 0.226605 0.146026 0.448090 0.179278 0.426287 0.271818 0.098338 0.203557 0.390566 0.198102 0.075230 0.336102 0.090943 0.011516 0.028466 0.869075 0.023176 0.004265 0.002650 0.969909 0.036442 0.002642 0.002614 0.958302 0.265589 0.003283 0.002505 0.728623 0.982094 0.006158 0.004106 0.007642 0.004658 0.003851 0.047375 0.944117 0.420260 0.009350 0.543925 0.026464 0.023188 0.005598 0.657132 0.314082 0.103797 0.646641 0.127691 0.121871 0.043045 0.069294 0.310696 0.576965 0.357429 0.408701 0.160246 0.073624 0.369205 0.373182 0.191401 0.066211 Consensus sequence: HDHHTTTTATRGCKMV Alignment: HDHHTTTTATRGCKMV ---WTTWWAAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 9 Motif name: Motif 9 Original motif 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.467896 0.000000 0.000000 0.532104 Consensus sequence: GCTGGGAW Reserve complement motif 0.532104 0.000000 0.000000 0.467896 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 Consensus sequence: WTCCCAGC ************************************************************************ Best Matches for Motif ID 9 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_primary Original Motif Original Motif Backward 7 8 0.000000 Species: Mus musculus Original motif 0.302837 0.133017 0.249940 0.314205 0.378542 0.186425 0.250700 0.184332 0.184780 0.144329 0.262766 0.408125 0.308569 0.039689 0.235695 0.416047 0.817738 0.108938 0.033419 0.039905 0.018996 0.007718 0.013175 0.960112 0.009278 0.002422 0.973921 0.014379 0.005587 0.002693 0.985088 0.006633 0.005874 0.004232 0.976927 0.012967 0.951309 0.011835 0.023187 0.013669 0.005927 0.004521 0.005701 0.983851 0.146443 0.003009 0.840720 0.009829 0.002553 0.044504 0.542059 0.410884 0.406299 0.375782 0.133922 0.083997 0.256884 0.160184 0.271190 0.311742 0.388381 0.141811 0.214600 0.255208 0.340877 0.274387 0.205585 0.179151 Consensus sequence: DVDDATGGGATGKMDDV Reverse complement motif 0.179151 0.274387 0.205585 0.340877 0.255208 0.141811 0.214600 0.388381 0.311742 0.160184 0.271190 0.256884 0.083997 0.375782 0.133922 0.406299 0.002553 0.542059 0.044504 0.410884 0.146443 0.840720 0.003009 0.009829 0.983851 0.004521 0.005701 0.005927 0.013669 0.011835 0.023187 0.951309 0.005874 0.976927 0.004232 0.012967 0.005587 0.985088 0.002693 0.006633 0.009278 0.973921 0.002422 0.014379 0.960112 0.007718 0.013175 0.018996 0.039905 0.108938 0.033419 0.817738 0.416047 0.039689 0.235695 0.308569 0.408125 0.144329 0.262766 0.184780 0.184332 0.186425 0.250700 0.378542 0.314205 0.133017 0.249940 0.302837 Consensus sequence: BDDYYCATCCCATDDBD Alignment: DVDDATGGGATGKMDDV ---GCTGGGAW------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00006 Zic3_secondary Original Motif Reverse Complement Backward 2 8 0.001559 Species: Mus musculus Original motif 0.225537 0.223459 0.280507 0.270498 0.332396 0.181810 0.207290 0.278505 0.309873 0.017922 0.386135 0.286070 0.101947 0.871607 0.020267 0.006179 0.541366 0.089100 0.242170 0.127364 0.003307 0.969997 0.002414 0.024283 0.903286 0.021590 0.015872 0.059253 0.039887 0.009732 0.945083 0.005298 0.001704 0.827209 0.006276 0.164810 0.723052 0.003102 0.221051 0.052795 0.011758 0.024398 0.560633 0.403211 0.003656 0.012952 0.939586 0.043807 0.477846 0.270399 0.113113 0.138642 0.225706 0.298505 0.258523 0.217266 0.365251 0.191780 0.197411 0.245557 Consensus sequence: DDDCACAGCAKGHVD Reverse complement motif 0.245557 0.191780 0.197411 0.365251 0.225706 0.258523 0.298505 0.217266 0.138642 0.270399 0.113113 0.477846 0.003656 0.939586 0.012952 0.043807 0.011758 0.560633 0.024398 0.403211 0.052795 0.003102 0.221051 0.723052 0.001704 0.006276 0.827209 0.164810 0.039887 0.945083 0.009732 0.005298 0.059253 0.021590 0.015872 0.903286 0.003307 0.002414 0.969997 0.024283 0.127364 0.089100 0.242170 0.541366 0.101947 0.020267 0.871607 0.006179 0.309873 0.386135 0.017922 0.286070 0.278505 0.181810 0.207290 0.332396 0.225537 0.280507 0.223459 0.270498 Consensus sequence: DVHCYTGCTGTGHDH Alignment: DVHCYTGCTGTGHDH ------GCTGGGAW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00102 Zic1_secondary Original Motif Reverse Complement Backward 2 8 0.003111 Species: Mus musculus Original motif 0.161683 0.405114 0.171743 0.261460 0.259478 0.357988 0.146793 0.235741 0.371334 0.026439 0.283598 0.318630 0.092229 0.883389 0.018758 0.005623 0.419591 0.169874 0.253266 0.157270 0.002985 0.976375 0.002722 0.017918 0.909381 0.021357 0.013299 0.055963 0.039418 0.007014 0.948302 0.005266 0.001711 0.845894 0.005756 0.146640 0.803792 0.003049 0.148687 0.044472 0.015314 0.017153 0.680239 0.287294 0.003793 0.011414 0.937403 0.047390 0.431916 0.266291 0.144154 0.157638 0.269331 0.239338 0.366817 0.124513 0.395873 0.103980 0.214796 0.285351 Consensus sequence: BHDCVCAGCAGGHVD Reverse complement motif 0.285351 0.103980 0.214796 0.395873 0.269331 0.366817 0.239338 0.124513 0.157638 0.266291 0.144154 0.431916 0.003793 0.937403 0.011414 0.047390 0.015314 0.680239 0.017153 0.287294 0.044472 0.003049 0.148687 0.803792 0.001711 0.005756 0.845894 0.146640 0.039418 0.948302 0.007014 0.005266 0.055963 0.021357 0.013299 0.909381 0.002985 0.002722 0.976375 0.017918 0.157270 0.169874 0.253266 0.419591 0.092229 0.018758 0.883389 0.005623 0.318630 0.026439 0.283598 0.371334 0.259478 0.146793 0.357988 0.235741 0.161683 0.171743 0.405114 0.261460 Consensus sequence: DVHCCTGCTGBGDDB Alignment: DVHCCTGCTGBGDDB ------GCTGGGAW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_secondary Original Motif Reverse Complement Forward 7 8 0.003787 Species: Mus musculus Original motif 0.201522 0.336845 0.183740 0.277892 0.238705 0.354378 0.165332 0.241585 0.350858 0.031427 0.308482 0.309233 0.104423 0.870794 0.018676 0.006107 0.313246 0.259944 0.277570 0.149241 0.003590 0.973377 0.002520 0.020513 0.899716 0.025489 0.015458 0.059336 0.049224 0.006415 0.938214 0.006147 0.002021 0.859631 0.007903 0.130445 0.772818 0.002659 0.187334 0.037190 0.008456 0.015170 0.594695 0.381679 0.004118 0.009188 0.961506 0.025188 0.367151 0.230955 0.204475 0.197419 0.267508 0.193660 0.430070 0.108762 0.444449 0.099127 0.212182 0.244241 Consensus sequence: HHDCVCAGCAKGVVD Reverse complement motif 0.244241 0.099127 0.212182 0.444449 0.267508 0.430070 0.193660 0.108762 0.197419 0.230955 0.204475 0.367151 0.004118 0.961506 0.009188 0.025188 0.008456 0.594695 0.015170 0.381679 0.037190 0.002659 0.187334 0.772818 0.002021 0.007903 0.859631 0.130445 0.049224 0.938214 0.006415 0.006147 0.059336 0.025489 0.015458 0.899716 0.003590 0.002520 0.973377 0.020513 0.149241 0.259944 0.277570 0.313246 0.104423 0.018676 0.870794 0.006107 0.309233 0.031427 0.308482 0.350858 0.238705 0.165332 0.354378 0.241585 0.201522 0.183740 0.336845 0.277892 Consensus sequence: DVBCYTGCTGBGDDD Alignment: DVBCYTGCTGBGDDD ------GCTGGGAW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00035 Hic1_primary Original Motif Reverse Complement Forward 6 8 0.004994 Species: Mus musculus Original motif 0.275207 0.211375 0.250277 0.263141 0.135064 0.327571 0.217556 0.319808 0.145659 0.242586 0.267179 0.344576 0.656519 0.009712 0.315174 0.018595 0.002265 0.004755 0.001656 0.991325 0.041873 0.001128 0.955340 0.001659 0.001306 0.974834 0.022215 0.001645 0.001978 0.992066 0.002638 0.003317 0.921032 0.072388 0.001237 0.005344 0.582027 0.211694 0.115736 0.090542 0.005990 0.927450 0.028306 0.038254 0.027374 0.799879 0.053667 0.119080 0.203510 0.191263 0.168997 0.436229 0.402253 0.154087 0.291346 0.152314 0.201201 0.414412 0.145330 0.239056 0.241094 0.332661 0.143464 0.282781 Consensus sequence: DBBATGCCAACCHVHH Reverse complement motif 0.241094 0.143464 0.332661 0.282781 0.201201 0.145330 0.414412 0.239056 0.152314 0.154087 0.291346 0.402253 0.436229 0.191263 0.168997 0.203510 0.027374 0.053667 0.799879 0.119080 0.005990 0.028306 0.927450 0.038254 0.090542 0.211694 0.115736 0.582027 0.005344 0.072388 0.001237 0.921032 0.001978 0.002638 0.992066 0.003317 0.001306 0.022215 0.974834 0.001645 0.041873 0.955340 0.001128 0.001659 0.991325 0.004755 0.001656 0.002265 0.018595 0.009712 0.315174 0.656519 0.344576 0.242586 0.267179 0.145659 0.135064 0.217556 0.327571 0.319808 0.263141 0.211375 0.250277 0.275207 Consensus sequence: DDBHGGTTGGCATVBD Alignment: DDBHGGTTGGCATVBD -----GCTGGGAW--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00122 Tgif1 Original Motif Reverse Complement Backward 5 8 0.008321 Species: Mus musculus Original motif 0.272977 0.158875 0.284742 0.283406 0.550609 0.124110 0.169608 0.155673 0.114568 0.207160 0.282464 0.395807 0.560868 0.052907 0.053508 0.332716 0.336500 0.068048 0.114050 0.481403 0.007736 0.003722 0.000495 0.988048 0.004489 0.000729 0.992211 0.002571 0.956618 0.000414 0.000890 0.042078 0.004381 0.990925 0.000538 0.004156 0.982797 0.000366 0.015539 0.001298 0.016760 0.002980 0.969991 0.010269 0.036013 0.725983 0.200022 0.037982 0.064755 0.104386 0.133891 0.696968 0.199404 0.263520 0.410228 0.126848 0.222648 0.351390 0.272575 0.153387 0.087778 0.206043 0.395671 0.310507 0.319643 0.144216 0.196041 0.340100 Consensus sequence: DABWWTGACAGCTVVBD Reverse complement motif 0.340100 0.144216 0.196041 0.319643 0.087778 0.395671 0.206043 0.310507 0.222648 0.272575 0.351390 0.153387 0.199404 0.410228 0.263520 0.126848 0.696968 0.104386 0.133891 0.064755 0.036013 0.200022 0.725983 0.037982 0.016760 0.969991 0.002980 0.010269 0.001298 0.000366 0.015539 0.982797 0.004381 0.000538 0.990925 0.004156 0.042078 0.000414 0.000890 0.956618 0.004489 0.992211 0.000729 0.002571 0.988048 0.003722 0.000495 0.007736 0.481403 0.068048 0.114050 0.336500 0.332716 0.052907 0.053508 0.560868 0.395807 0.207160 0.282464 0.114568 0.155673 0.124110 0.169608 0.550609 0.272977 0.284742 0.158875 0.283406 Consensus sequence: DBVVAGCTGTCAWWVTH Alignment: DBVVAGCTGTCAWWVTH -----GCTGGGAW---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00193 Rhox11_2205.1 Reverse Complement Reverse Complement Forward 5 8 0.014195 Species: Mus musculus Original motif 0.504898 0.140204 0.135418 0.219480 0.282348 0.244881 0.300572 0.172199 0.183939 0.100670 0.384783 0.330608 0.326709 0.269523 0.194043 0.209724 0.142989 0.557393 0.066826 0.232792 0.038356 0.014052 0.932450 0.015142 0.092102 0.778844 0.125082 0.003972 0.010254 0.001252 0.005231 0.983263 0.033486 0.000891 0.947486 0.018137 0.005360 0.007407 0.003729 0.983504 0.603485 0.007179 0.003482 0.385853 0.798026 0.029788 0.032370 0.139816 0.529622 0.100632 0.016507 0.353238 0.243581 0.126094 0.401402 0.228923 0.207484 0.285456 0.353715 0.153346 0.282413 0.188410 0.441463 0.087715 0.422774 0.152965 0.094106 0.330155 Consensus sequence: AVDHCGCTGTWAWDVVW Reverse complement motif 0.330155 0.152965 0.094106 0.422774 0.282413 0.441463 0.188410 0.087715 0.207484 0.353715 0.285456 0.153346 0.243581 0.401402 0.126094 0.228923 0.353238 0.100632 0.016507 0.529622 0.139816 0.029788 0.032370 0.798026 0.385853 0.007179 0.003482 0.603485 0.983504 0.007407 0.003729 0.005360 0.033486 0.947486 0.000891 0.018137 0.983263 0.001252 0.005231 0.010254 0.092102 0.125082 0.778844 0.003972 0.038356 0.932450 0.014052 0.015142 0.142989 0.066826 0.557393 0.232792 0.209724 0.269523 0.194043 0.326709 0.183939 0.384783 0.100670 0.330608 0.282348 0.300572 0.244881 0.172199 0.219480 0.140204 0.135418 0.504898 Consensus sequence: WVVHWTWACAGCGHHVT Alignment: WVVHWTWACAGCGHHVT ----WTCCCAGC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00193 Rhox11_1765.2 Reverse Complement Reverse Complement Forward 5 8 0.014648 Species: Mus musculus Original motif 0.538735 0.129821 0.147336 0.184107 0.331267 0.275123 0.227609 0.166001 0.174654 0.113319 0.383610 0.328417 0.296734 0.281670 0.230068 0.191527 0.128222 0.561296 0.062928 0.247554 0.027028 0.014676 0.949335 0.008962 0.087209 0.761581 0.147964 0.003246 0.006796 0.000741 0.006037 0.986427 0.039496 0.000533 0.943453 0.016517 0.005541 0.005164 0.002805 0.986489 0.561957 0.002761 0.004207 0.431075 0.780197 0.037155 0.031222 0.151425 0.518642 0.104220 0.012670 0.364468 0.314451 0.111366 0.333508 0.240676 0.236936 0.357992 0.280813 0.124259 0.314846 0.163774 0.426195 0.095185 0.408340 0.134111 0.102987 0.354562 Consensus sequence: AVDVCGCTGTWAWDVVW Reverse complement motif 0.354562 0.134111 0.102987 0.408340 0.314846 0.426195 0.163774 0.095185 0.236936 0.280813 0.357992 0.124259 0.314451 0.333508 0.111366 0.240676 0.364468 0.104220 0.012670 0.518642 0.151425 0.037155 0.031222 0.780197 0.431075 0.002761 0.004207 0.561957 0.986489 0.005164 0.002805 0.005541 0.039496 0.943453 0.000533 0.016517 0.986427 0.000741 0.006037 0.006796 0.087209 0.147964 0.761581 0.003246 0.027028 0.949335 0.014676 0.008962 0.128222 0.062928 0.561296 0.247554 0.191527 0.281670 0.230068 0.296734 0.174654 0.383610 0.113319 0.328417 0.166001 0.275123 0.227609 0.331267 0.184107 0.129821 0.147336 0.538735 Consensus sequence: WVVHWTWACAGCGBHBT Alignment: WVVHWTWACAGCGBHBT ----WTCCCAGC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00068 Eomes_primary Reverse Complement Reverse Complement Forward 5 8 0.015594 Species: Mus musculus Original motif 0.186316 0.215541 0.297644 0.300499 0.300381 0.234276 0.266283 0.199061 0.317841 0.211418 0.183235 0.287507 0.482598 0.095323 0.245062 0.177017 0.654197 0.008988 0.261951 0.074864 0.095656 0.022883 0.843364 0.038097 0.002655 0.008355 0.976390 0.012600 0.003287 0.080755 0.001057 0.914900 0.006753 0.001517 0.989917 0.001813 0.039940 0.098800 0.003305 0.857955 0.009015 0.039036 0.844029 0.107921 0.984070 0.002369 0.008852 0.004709 0.789505 0.101528 0.029294 0.079672 0.649685 0.139882 0.090466 0.119966 0.421759 0.205595 0.073074 0.299573 0.214779 0.290522 0.134050 0.360649 0.202141 0.270323 0.176798 0.350738 Consensus sequence: BVHDAGGTGTGAAAHHH Reverse complement motif 0.350738 0.270323 0.176798 0.202141 0.360649 0.290522 0.134050 0.214779 0.299573 0.205595 0.073074 0.421759 0.119966 0.139882 0.090466 0.649685 0.079672 0.101528 0.029294 0.789505 0.004709 0.002369 0.008852 0.984070 0.009015 0.844029 0.039036 0.107921 0.857955 0.098800 0.003305 0.039940 0.006753 0.989917 0.001517 0.001813 0.914900 0.080755 0.001057 0.003287 0.002655 0.976390 0.008355 0.012600 0.095656 0.843364 0.022883 0.038097 0.074864 0.008988 0.261951 0.654197 0.177017 0.095323 0.245062 0.482598 0.287507 0.211418 0.183235 0.317841 0.199061 0.234276 0.266283 0.300381 0.300499 0.215541 0.297644 0.186316 Consensus sequence: HHHTTTCACACCTDHBV Alignment: HHHTTTCACACCTDHBV ----WTCCCAGC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00258 Tgif2 Reverse Complement Reverse Complement Forward 4 8 0.015945 Species: Mus musculus Original motif 0.519684 0.141807 0.112153 0.226356 0.614097 0.079211 0.138045 0.168647 0.186975 0.327654 0.245051 0.240320 0.108289 0.303530 0.219106 0.369076 0.914812 0.012014 0.046628 0.026546 0.070482 0.163253 0.689315 0.076951 0.016354 0.972639 0.003648 0.007359 0.002043 0.018718 0.000384 0.978855 0.006109 0.001408 0.990736 0.001747 0.024783 0.002060 0.000402 0.972755 0.001485 0.991963 0.001756 0.004796 0.989335 0.001052 0.002320 0.007293 0.778804 0.056366 0.037632 0.127198 0.377980 0.094597 0.086888 0.440535 0.458125 0.289431 0.152762 0.099682 0.223103 0.435348 0.216962 0.124587 Consensus sequence: AABBAGCTGTCAAWVV Reverse complement motif 0.223103 0.216962 0.435348 0.124587 0.099682 0.289431 0.152762 0.458125 0.440535 0.094597 0.086888 0.377980 0.127198 0.056366 0.037632 0.778804 0.007293 0.001052 0.002320 0.989335 0.001485 0.001756 0.991963 0.004796 0.972755 0.002060 0.000402 0.024783 0.006109 0.990736 0.001408 0.001747 0.978855 0.018718 0.000384 0.002043 0.016354 0.003648 0.972639 0.007359 0.070482 0.689315 0.163253 0.076951 0.026546 0.012014 0.046628 0.914812 0.369076 0.303530 0.219106 0.108289 0.186975 0.245051 0.327654 0.240320 0.168647 0.079211 0.138045 0.614097 0.226356 0.141807 0.112153 0.519684 Consensus sequence: VBWTTGACAGCTVBTT Alignment: VBWTTGACAGCTVBTT ---WTCCCAGC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 10 Motif name: Motif 10 Original motif 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.437636 0.494089 0.000000 0.068275 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: TAMATA Reserve complement motif 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.437636 0.000000 0.494089 0.068275 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: TATRTA ************************************************************************ Best Matches for Motif ID 10 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00082 Zfp187_primary Original Motif Reverse Complement Backward 2 6 0.000000 Species: Mus musculus Original motif 0.190539 0.277187 0.240231 0.292043 0.132707 0.187246 0.111293 0.568754 0.936112 0.021141 0.033932 0.008815 0.012721 0.023350 0.004164 0.959765 0.007185 0.002386 0.987110 0.003318 0.059134 0.009005 0.034016 0.897845 0.900906 0.002575 0.086677 0.009842 0.003163 0.941371 0.002196 0.053270 0.034631 0.265318 0.037179 0.662873 0.967171 0.007014 0.003028 0.022787 0.980796 0.002228 0.010049 0.006927 0.020630 0.005755 0.005408 0.968208 0.427020 0.122682 0.118347 0.331951 0.447075 0.284990 0.061633 0.206303 Consensus sequence: BTATGTACTAATWH Reverse complement motif 0.206303 0.284990 0.061633 0.447075 0.331951 0.122682 0.118347 0.427020 0.968208 0.005755 0.005408 0.020630 0.006927 0.002228 0.010049 0.980796 0.022787 0.007014 0.003028 0.967171 0.662873 0.265318 0.037179 0.034631 0.003163 0.002196 0.941371 0.053270 0.009842 0.002575 0.086677 0.900906 0.897845 0.009005 0.034016 0.059134 0.007185 0.987110 0.002386 0.003318 0.959765 0.023350 0.004164 0.012721 0.008815 0.021141 0.033932 0.936112 0.568754 0.187246 0.111293 0.132707 0.292043 0.277187 0.240231 0.190539 Consensus sequence: HWATTAGTACATAV Alignment: HWATTAGTACATAV -------TAMATA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_primary Original Motif Original Motif Backward 6 6 0.002402 Species: Mus musculus Original motif 0.335487 0.205062 0.128957 0.330494 0.411635 0.179625 0.175701 0.233038 0.412976 0.128602 0.091890 0.366532 0.608396 0.079002 0.107142 0.205460 0.433474 0.035203 0.153143 0.378180 0.087552 0.005003 0.894586 0.012858 0.004459 0.038951 0.001109 0.955481 0.924470 0.068560 0.001165 0.005805 0.920483 0.070039 0.001674 0.007805 0.988335 0.001902 0.003155 0.006608 0.001527 0.656726 0.002699 0.339047 0.987505 0.001810 0.004336 0.006349 0.719584 0.065184 0.050384 0.164848 0.535389 0.099997 0.102849 0.261764 0.245215 0.272017 0.301499 0.181269 0.306107 0.209040 0.248687 0.236166 0.223744 0.278668 0.251931 0.245657 Consensus sequence: HHWAWGTAAAYAAAVDB Reverse complement motif 0.223744 0.251931 0.278668 0.245657 0.236166 0.209040 0.248687 0.306107 0.245215 0.301499 0.272017 0.181269 0.261764 0.099997 0.102849 0.535389 0.164848 0.065184 0.050384 0.719584 0.006349 0.001810 0.004336 0.987505 0.001527 0.002699 0.656726 0.339047 0.006608 0.001902 0.003155 0.988335 0.007805 0.070039 0.001674 0.920483 0.005805 0.068560 0.001165 0.924470 0.955481 0.038951 0.001109 0.004459 0.087552 0.894586 0.005003 0.012858 0.378180 0.035203 0.153143 0.433474 0.205460 0.079002 0.107142 0.608396 0.366532 0.128602 0.091890 0.412976 0.233038 0.179625 0.175701 0.411635 0.330494 0.205062 0.128957 0.335487 Consensus sequence: BDVTTTKTTTACWTWHH Alignment: HHWAWGTAAAYAAAVDB ------TAMATA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_primary Original Motif Original Motif Forward 7 6 0.008074 Species: Mus musculus Original motif 0.323208 0.152915 0.185111 0.338766 0.428132 0.056109 0.099487 0.416272 0.659386 0.039965 0.035805 0.264843 0.647143 0.049206 0.078984 0.224667 0.208834 0.076592 0.071631 0.642943 0.341077 0.003865 0.649511 0.005547 0.016627 0.001866 0.001715 0.979792 0.952319 0.045294 0.000870 0.001516 0.988834 0.004620 0.000720 0.005826 0.989346 0.001005 0.006467 0.003182 0.001093 0.784230 0.001235 0.213442 0.991209 0.002017 0.001737 0.005037 0.801581 0.037084 0.023060 0.138274 0.528554 0.089350 0.107501 0.274595 0.208802 0.268646 0.368022 0.154530 0.280218 0.221367 0.340497 0.157918 0.146611 0.250725 0.293524 0.309140 Consensus sequence: DWAATRTAAACAAWVVB Reverse complement motif 0.309140 0.250725 0.293524 0.146611 0.280218 0.340497 0.221367 0.157918 0.208802 0.368022 0.268646 0.154530 0.274595 0.089350 0.107501 0.528554 0.138274 0.037084 0.023060 0.801581 0.005037 0.002017 0.001737 0.991209 0.001093 0.001235 0.784230 0.213442 0.003182 0.001005 0.006467 0.989346 0.005826 0.004620 0.000720 0.988834 0.001516 0.045294 0.000870 0.952319 0.979792 0.001866 0.001715 0.016627 0.341077 0.649511 0.003865 0.005547 0.642943 0.076592 0.071631 0.208834 0.224667 0.049206 0.078984 0.647143 0.264843 0.039965 0.035805 0.659386 0.416272 0.056109 0.099487 0.428132 0.338766 0.152915 0.185111 0.323208 Consensus sequence: VVVWTTGTTTAMATTWD Alignment: DWAATRTAAACAAWVVB ------TAMATA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_primary Original Motif Original Motif Backward 6 6 0.010447 Species: Mus musculus Original motif 0.273456 0.257473 0.208488 0.260583 0.338566 0.133379 0.306363 0.221693 0.475488 0.192852 0.156858 0.174803 0.506619 0.132646 0.170373 0.190362 0.349042 0.127275 0.325924 0.197759 0.303850 0.013619 0.678034 0.004497 0.014136 0.015691 0.003073 0.967100 0.913373 0.082928 0.001910 0.001789 0.956294 0.017745 0.000584 0.025378 0.987796 0.001685 0.004159 0.006360 0.002288 0.814764 0.001427 0.181521 0.986707 0.002688 0.003346 0.007259 0.787378 0.065481 0.057961 0.089180 0.572982 0.089910 0.066184 0.270924 0.224167 0.339979 0.258886 0.176968 0.268414 0.272007 0.239541 0.220038 0.241771 0.394748 0.174273 0.189208 Consensus sequence: HDHADGTAAACAAAVVH Reverse complement motif 0.241771 0.174273 0.394748 0.189208 0.268414 0.239541 0.272007 0.220038 0.224167 0.258886 0.339979 0.176968 0.270924 0.089910 0.066184 0.572982 0.089180 0.065481 0.057961 0.787378 0.007259 0.002688 0.003346 0.986707 0.002288 0.001427 0.814764 0.181521 0.006360 0.001685 0.004159 0.987796 0.025378 0.017745 0.000584 0.956294 0.001789 0.082928 0.001910 0.913373 0.967100 0.015691 0.003073 0.014136 0.303850 0.678034 0.013619 0.004497 0.197759 0.127275 0.325924 0.349042 0.190362 0.132646 0.170373 0.506619 0.174803 0.192852 0.156858 0.475488 0.221693 0.133379 0.306363 0.338566 0.260583 0.257473 0.208488 0.273456 Consensus sequence: DVVTTTGTTTACDTHDH Alignment: HDHADGTAAACAAAVVH ------TAMATA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_primary Original Motif Original Motif Backward 6 6 0.013337 Species: Mus musculus Original motif 0.338172 0.192194 0.207817 0.261817 0.407924 0.117261 0.278236 0.196580 0.595570 0.070480 0.119221 0.214729 0.710845 0.038748 0.052600 0.197807 0.124647 0.116138 0.178053 0.581162 0.201602 0.005514 0.792110 0.000774 0.024590 0.004193 0.001331 0.969886 0.919465 0.077871 0.000760 0.001904 0.972342 0.010395 0.000580 0.016683 0.991045 0.001495 0.003585 0.003875 0.001358 0.885197 0.000980 0.112465 0.990318 0.001846 0.002968 0.004867 0.804563 0.063147 0.023496 0.108795 0.564824 0.087976 0.102865 0.244336 0.269947 0.300278 0.285008 0.144767 0.337905 0.220102 0.253694 0.188299 0.153781 0.274135 0.318343 0.253741 Consensus sequence: DDAATGTAAACAAAVVB Reverse complement motif 0.153781 0.318343 0.274135 0.253741 0.188299 0.220102 0.253694 0.337905 0.269947 0.285008 0.300278 0.144767 0.244336 0.087976 0.102865 0.564824 0.108795 0.063147 0.023496 0.804563 0.004867 0.001846 0.002968 0.990318 0.001358 0.000980 0.885197 0.112465 0.003875 0.001495 0.003585 0.991045 0.016683 0.010395 0.000580 0.972342 0.001904 0.077871 0.000760 0.919465 0.969886 0.004193 0.001331 0.024590 0.201602 0.792110 0.005514 0.000774 0.581162 0.116138 0.178053 0.124647 0.197807 0.038748 0.052600 0.710845 0.214729 0.070480 0.119221 0.595570 0.196580 0.117261 0.278236 0.407924 0.261817 0.192194 0.207817 0.338172 Consensus sequence: BBVTTTGTTTACATTDD Alignment: DDAATGTAAACAAAVVB ------TAMATA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00211 Pou3f3 Reverse Complement Reverse Complement Backward 7 6 0.015909 Species: Mus musculus Original motif 0.402059 0.183334 0.129995 0.284612 0.637165 0.097294 0.089284 0.176258 0.307269 0.160096 0.305393 0.227242 0.342471 0.102992 0.265291 0.289246 0.091600 0.100833 0.033581 0.773986 0.798635 0.078572 0.026801 0.095992 0.006820 0.052860 0.002012 0.938308 0.017076 0.003624 0.947530 0.031771 0.086932 0.905749 0.001612 0.005708 0.983215 0.002160 0.010700 0.003925 0.030968 0.005240 0.011437 0.952355 0.893793 0.010310 0.013393 0.082504 0.666055 0.063676 0.007180 0.263089 0.170333 0.094919 0.231056 0.503693 0.342691 0.132989 0.269857 0.254463 0.371397 0.117426 0.241987 0.269189 0.598148 0.065635 0.098090 0.238127 Consensus sequence: HADDTATGCATAATDDA Reverse complement motif 0.238127 0.065635 0.098090 0.598148 0.269189 0.117426 0.241987 0.371397 0.254463 0.132989 0.269857 0.342691 0.503693 0.094919 0.231056 0.170333 0.263089 0.063676 0.007180 0.666055 0.082504 0.010310 0.013393 0.893793 0.952355 0.005240 0.011437 0.030968 0.003925 0.002160 0.010700 0.983215 0.086932 0.001612 0.905749 0.005708 0.017076 0.947530 0.003624 0.031771 0.938308 0.052860 0.002012 0.006820 0.095992 0.078572 0.026801 0.798635 0.773986 0.100833 0.033581 0.091600 0.289246 0.102992 0.265291 0.342471 0.227242 0.160096 0.305393 0.307269 0.176258 0.097294 0.089284 0.637165 0.284612 0.183334 0.129995 0.402059 Consensus sequence: TDDATTATGCATADDTH Alignment: TDDATTATGCATADDTH -----TATRTA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00169 Lmx1b Original Motif Reverse Complement Forward 6 6 0.017777 Species: Mus musculus Original motif 0.336931 0.220707 0.306671 0.135692 0.251068 0.126246 0.394767 0.227919 0.318914 0.086872 0.150663 0.443551 0.368649 0.051170 0.092361 0.487819 0.359682 0.088506 0.064771 0.487041 0.019535 0.162692 0.015925 0.801848 0.015902 0.024224 0.000652 0.959222 0.974698 0.006086 0.002334 0.016882 0.978085 0.001281 0.005421 0.015214 0.015214 0.005421 0.001281 0.978085 0.016882 0.002334 0.006086 0.974698 0.959222 0.000652 0.024224 0.015902 0.801848 0.015925 0.162692 0.019535 0.242323 0.115688 0.116364 0.525625 0.283782 0.097563 0.188384 0.430271 0.252386 0.255982 0.135946 0.355686 0.141430 0.249462 0.350759 0.258349 Consensus sequence: VDWWWTTAATTAATDHB Reverse complement motif 0.141430 0.350759 0.249462 0.258349 0.355686 0.255982 0.135946 0.252386 0.430271 0.097563 0.188384 0.283782 0.525625 0.115688 0.116364 0.242323 0.019535 0.015925 0.162692 0.801848 0.015902 0.000652 0.024224 0.959222 0.974698 0.002334 0.006086 0.016882 0.978085 0.005421 0.001281 0.015214 0.015214 0.001281 0.005421 0.978085 0.016882 0.006086 0.002334 0.974698 0.959222 0.024224 0.000652 0.015902 0.801848 0.162692 0.015925 0.019535 0.487041 0.088506 0.064771 0.359682 0.487819 0.051170 0.092361 0.368649 0.443551 0.086872 0.150663 0.318914 0.251068 0.394767 0.126246 0.227919 0.135692 0.220707 0.306671 0.336931 Consensus sequence: BHDATTAATTAAWWWHB Alignment: BHDATTAATTAAWWWHB -----TAMATA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00172 Prop1 Original Motif Reverse Complement Backward 6 6 0.017876 Species: Mus musculus Original motif 0.239694 0.382964 0.212782 0.164560 0.211105 0.192638 0.471186 0.125071 0.361402 0.251084 0.217415 0.170099 0.474402 0.180412 0.249562 0.095624 0.015257 0.155181 0.007371 0.822191 0.011633 0.033757 0.000947 0.953662 0.984150 0.005351 0.005253 0.005247 0.982857 0.001638 0.005309 0.010196 0.010196 0.005309 0.001638 0.982857 0.005247 0.005253 0.005351 0.984150 0.953662 0.000947 0.033757 0.011633 0.822191 0.007371 0.155181 0.015257 0.159439 0.160044 0.349613 0.330903 0.454571 0.111567 0.175216 0.258646 0.305750 0.183822 0.246269 0.264159 0.351726 0.178703 0.236408 0.233163 0.142463 0.525857 0.103778 0.227902 Consensus sequence: VVVVTTAATTAABDDDC Reverse complement motif 0.142463 0.103778 0.525857 0.227902 0.233163 0.178703 0.236408 0.351726 0.264159 0.183822 0.246269 0.305750 0.258646 0.111567 0.175216 0.454571 0.159439 0.349613 0.160044 0.330903 0.015257 0.007371 0.155181 0.822191 0.011633 0.000947 0.033757 0.953662 0.984150 0.005253 0.005351 0.005247 0.982857 0.005309 0.001638 0.010196 0.010196 0.001638 0.005309 0.982857 0.005247 0.005351 0.005253 0.984150 0.953662 0.033757 0.000947 0.011633 0.822191 0.155181 0.007371 0.015257 0.095624 0.180412 0.249562 0.474402 0.170099 0.251084 0.217415 0.361402 0.211105 0.471186 0.192638 0.125071 0.239694 0.212782 0.382964 0.164560 Consensus sequence: GDDDBTTAATTAABBVV Alignment: GDDDBTTAATTAABBVV ------TAMATA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00237 Otp Original Motif Reverse Complement Backward 7 6 0.017974 Species: Mus musculus Original motif 0.230993 0.375169 0.212909 0.180928 0.308053 0.197960 0.335842 0.158144 0.146999 0.355311 0.118315 0.379375 0.411189 0.175886 0.183790 0.229135 0.473168 0.101553 0.388483 0.036796 0.007589 0.115608 0.001555 0.875248 0.008817 0.035417 0.000301 0.955465 0.983825 0.008430 0.006604 0.001141 0.983066 0.001256 0.010977 0.004701 0.004701 0.010977 0.001256 0.983066 0.001141 0.006604 0.008430 0.983825 0.955465 0.000301 0.035417 0.008817 0.875248 0.001555 0.115608 0.007589 0.059530 0.422614 0.086819 0.431037 0.234910 0.104731 0.282998 0.377362 0.222053 0.180868 0.345763 0.251316 0.124269 0.122352 0.604547 0.148832 Consensus sequence: VVHDRTTAATTAAYDDG Reverse complement motif 0.124269 0.604547 0.122352 0.148832 0.222053 0.345763 0.180868 0.251316 0.377362 0.104731 0.282998 0.234910 0.431037 0.422614 0.086819 0.059530 0.007589 0.001555 0.115608 0.875248 0.008817 0.000301 0.035417 0.955465 0.983825 0.006604 0.008430 0.001141 0.983066 0.010977 0.001256 0.004701 0.004701 0.001256 0.010977 0.983066 0.001141 0.008430 0.006604 0.983825 0.955465 0.035417 0.000301 0.008817 0.875248 0.115608 0.001555 0.007589 0.036796 0.101553 0.388483 0.473168 0.229135 0.175886 0.183790 0.411189 0.379375 0.355311 0.118315 0.146999 0.308053 0.335842 0.197960 0.158144 0.230993 0.212909 0.375169 0.180928 Consensus sequence: CHDMTTAATTAAKDHVV Alignment: CHDMTTAATTAAKDHVV -----TAMATA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00232 Dobox4 Reverse Complement Reverse Complement Forward 8 6 0.017975 Species: Mus musculus Original motif 0.264302 0.211442 0.173361 0.350895 0.413224 0.116602 0.116602 0.353572 0.486656 0.190855 0.148590 0.173900 0.503388 0.062728 0.128222 0.305661 0.084825 0.015745 0.170672 0.728758 0.856596 0.001753 0.045684 0.095967 0.052745 0.001652 0.828687 0.116917 0.985176 0.012392 0.001483 0.000949 0.011350 0.100275 0.009362 0.879013 0.764353 0.230179 0.001125 0.004343 0.001443 0.952663 0.005512 0.040382 0.008496 0.966240 0.002248 0.023017 0.076925 0.757970 0.008043 0.157062 0.097162 0.473715 0.088219 0.340904 0.392557 0.078339 0.147795 0.381309 0.055342 0.079606 0.149083 0.715969 0.369817 0.112894 0.219338 0.297952 Consensus sequence: HWHWTAGATACCCYWTD Reverse complement motif 0.297952 0.112894 0.219338 0.369817 0.715969 0.079606 0.149083 0.055342 0.381309 0.078339 0.147795 0.392557 0.097162 0.088219 0.473715 0.340904 0.076925 0.008043 0.757970 0.157062 0.008496 0.002248 0.966240 0.023017 0.001443 0.005512 0.952663 0.040382 0.004343 0.230179 0.001125 0.764353 0.879013 0.100275 0.009362 0.011350 0.000949 0.012392 0.001483 0.985176 0.052745 0.828687 0.001652 0.116917 0.095967 0.001753 0.045684 0.856596 0.728758 0.015745 0.170672 0.084825 0.305661 0.062728 0.128222 0.503388 0.173900 0.190855 0.148590 0.486656 0.353572 0.116602 0.116602 0.413224 0.350895 0.211442 0.173361 0.264302 Consensus sequence: DAWKGGGTATCTAWHWH Alignment: DAWKGGGTATCTAWHWH -------TATRTA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 11 Motif name: Motif 11 Original motif 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.533063 0.257085 0.209852 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 Consensus sequence: CCGCCGCC Reserve complement motif 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.257085 0.533063 0.209852 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: GGCGGCGG ************************************************************************ Best Matches for Motif ID 11 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Original Motif Original Motif Forward 5 8 0.003194 Species: Mus musculus Original motif 0.155386 0.223380 0.374454 0.246780 0.247106 0.159582 0.345111 0.248201 0.238889 0.258354 0.165304 0.337454 0.255612 0.489586 0.051621 0.203182 0.450100 0.545383 0.001071 0.003447 0.003704 0.991007 0.002456 0.002833 0.035504 0.001814 0.928129 0.034553 0.001494 0.991406 0.003414 0.003686 0.003045 0.990628 0.005182 0.001145 0.000990 0.963237 0.001215 0.034557 0.148016 0.838396 0.000666 0.012922 0.014261 0.905847 0.007200 0.072692 0.083394 0.270068 0.058368 0.588170 0.149141 0.286783 0.142802 0.421274 0.204851 0.347195 0.253356 0.194597 0.184442 0.299908 0.194408 0.321242 0.125793 0.380109 0.245318 0.248780 Consensus sequence: BDHHMCGCCCCCTHVBB Reverse complement motif 0.125793 0.245318 0.380109 0.248780 0.321242 0.299908 0.194408 0.184442 0.204851 0.253356 0.347195 0.194597 0.421274 0.286783 0.142802 0.149141 0.588170 0.270068 0.058368 0.083394 0.014261 0.007200 0.905847 0.072692 0.148016 0.000666 0.838396 0.012922 0.000990 0.001215 0.963237 0.034557 0.003045 0.005182 0.990628 0.001145 0.001494 0.003414 0.991406 0.003686 0.035504 0.928129 0.001814 0.034553 0.003704 0.002456 0.991007 0.002833 0.450100 0.001071 0.545383 0.003447 0.255612 0.051621 0.489586 0.203182 0.337454 0.258354 0.165304 0.238889 0.247106 0.345111 0.159582 0.248201 0.155386 0.374454 0.223380 0.246780 Consensus sequence: BVVHAGGGGGCGRDHHB Alignment: BDHHMCGCCCCCTHVBB ----CCGCCGCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Original Motif Original Motif Backward 6 8 0.006470 Species: Mus musculus Original motif 0.211547 0.282708 0.203472 0.302273 0.141988 0.722437 0.054854 0.080721 0.032605 0.877172 0.012432 0.077792 0.115126 0.070606 0.781290 0.032979 0.003516 0.990021 0.002265 0.004198 0.004715 0.982482 0.009897 0.002906 0.001627 0.975937 0.001662 0.020774 0.262352 0.731732 0.002730 0.003187 0.005890 0.985756 0.002081 0.006273 0.022893 0.090460 0.649322 0.237324 0.023038 0.859949 0.037913 0.079101 0.567633 0.057394 0.166792 0.208181 0.176597 0.331265 0.125308 0.366830 0.183049 0.183774 0.226793 0.406384 Consensus sequence: HCCGCCCCCGCAHB Reverse complement motif 0.406384 0.183774 0.226793 0.183049 0.366830 0.331265 0.125308 0.176597 0.208181 0.057394 0.166792 0.567633 0.023038 0.037913 0.859949 0.079101 0.022893 0.649322 0.090460 0.237324 0.005890 0.002081 0.985756 0.006273 0.262352 0.002730 0.731732 0.003187 0.001627 0.001662 0.975937 0.020774 0.004715 0.009897 0.982482 0.002906 0.003516 0.002265 0.990021 0.004198 0.115126 0.781290 0.070606 0.032979 0.032605 0.012432 0.877172 0.077792 0.141988 0.054854 0.722437 0.080721 0.302273 0.282708 0.203472 0.211547 Consensus sequence: VHTGCGGGGGCGGH Alignment: HCCGCCCCCGCAHB -CCGCCGCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Reverse Complement Reverse Complement Forward 6 8 0.023866 Species: Mus musculus Original motif 0.204514 0.198353 0.171218 0.425915 0.167188 0.296785 0.246082 0.289946 0.267330 0.148001 0.398674 0.185994 0.549386 0.060167 0.337100 0.053347 0.050746 0.900013 0.022169 0.027073 0.037905 0.920332 0.008360 0.033403 0.410356 0.566702 0.016267 0.006675 0.009526 0.982354 0.001060 0.007060 0.204292 0.001084 0.748567 0.046056 0.003955 0.988490 0.002821 0.004735 0.004264 0.988826 0.004311 0.002598 0.002758 0.929549 0.001244 0.066448 0.260332 0.421683 0.024720 0.293265 0.184798 0.247697 0.085237 0.482268 0.347537 0.197344 0.139961 0.315159 0.255281 0.166620 0.242297 0.335802 Consensus sequence: HBDRCCMCGCCCHHHD Reverse complement motif 0.335802 0.166620 0.242297 0.255281 0.315159 0.197344 0.139961 0.347537 0.482268 0.247697 0.085237 0.184798 0.260332 0.024720 0.421683 0.293265 0.002758 0.001244 0.929549 0.066448 0.004264 0.004311 0.988826 0.002598 0.003955 0.002821 0.988490 0.004735 0.204292 0.748567 0.001084 0.046056 0.009526 0.001060 0.982354 0.007060 0.410356 0.016267 0.566702 0.006675 0.037905 0.008360 0.920332 0.033403 0.050746 0.022169 0.900013 0.027073 0.053347 0.060167 0.337100 0.549386 0.267330 0.398674 0.148001 0.185994 0.167188 0.246082 0.296785 0.289946 0.425915 0.198353 0.171218 0.204514 Consensus sequence: DHHDGGGCGRGGKHBH Alignment: DHHDGGGCGRGGKHBH -----GGCGGCGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Reverse Complement Original Motif Backward 9 8 0.027845 Species: Mus musculus Original motif 0.298336 0.418632 0.208054 0.074978 0.289907 0.015608 0.457100 0.237385 0.273583 0.077889 0.107860 0.540668 0.184954 0.161611 0.384390 0.269045 0.521826 0.156340 0.089019 0.232815 0.356716 0.131104 0.394857 0.117323 0.266669 0.108765 0.505273 0.119293 0.020778 0.047199 0.919524 0.012500 0.948536 0.018775 0.008113 0.024576 0.010822 0.964042 0.014701 0.010434 0.007428 0.019505 0.966351 0.006717 0.010025 0.975678 0.008648 0.005649 0.043796 0.120935 0.742979 0.092289 0.008252 0.250704 0.541132 0.199913 0.474428 0.044681 0.134430 0.346461 0.146597 0.421317 0.143166 0.288920 0.020540 0.181479 0.553811 0.244170 0.129612 0.173360 0.535219 0.161808 0.506084 0.158156 0.130983 0.204776 0.054872 0.103043 0.545792 0.296293 0.389882 0.171037 0.164162 0.274918 0.225861 0.314031 0.288872 0.171237 Consensus sequence: VDWDARRGACGCGGWHGGAKHV Reverse complement motif 0.225861 0.288872 0.314031 0.171237 0.274918 0.171037 0.164162 0.389882 0.054872 0.545792 0.103043 0.296293 0.204776 0.158156 0.130983 0.506084 0.129612 0.535219 0.173360 0.161808 0.020540 0.553811 0.181479 0.244170 0.146597 0.143166 0.421317 0.288920 0.346461 0.044681 0.134430 0.474428 0.008252 0.541132 0.250704 0.199913 0.043796 0.742979 0.120935 0.092289 0.010025 0.008648 0.975678 0.005649 0.007428 0.966351 0.019505 0.006717 0.010822 0.014701 0.964042 0.010434 0.024576 0.018775 0.008113 0.948536 0.020778 0.919524 0.047199 0.012500 0.266669 0.505273 0.108765 0.119293 0.356716 0.394857 0.131104 0.117323 0.232815 0.156340 0.089019 0.521826 0.184954 0.384390 0.161611 0.269045 0.540668 0.077889 0.107860 0.273583 0.289907 0.457100 0.015608 0.237385 0.298336 0.208054 0.418632 0.074978 Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV Alignment: VDWDARRGACGCGGWHGGAKHV ------GGCGGCGG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Original Motif Original Motif Forward 4 8 0.028459 Species: Mus musculus Original motif 0.150668 0.131779 0.245665 0.471887 0.316817 0.287314 0.150829 0.245040 0.256473 0.409066 0.109700 0.224761 0.210646 0.220222 0.345010 0.224122 0.166679 0.508939 0.081676 0.242705 0.049351 0.759380 0.088489 0.102780 0.047598 0.785546 0.121957 0.044898 0.004606 0.944933 0.034696 0.015764 0.040252 0.050652 0.890382 0.018713 0.003038 0.913699 0.022449 0.060814 0.028672 0.941477 0.012276 0.017575 0.635243 0.139731 0.110495 0.114531 0.240016 0.385948 0.182848 0.191188 0.210430 0.274127 0.085171 0.430272 0.088118 0.454598 0.208989 0.248295 0.181269 0.265028 0.149023 0.404680 0.101070 0.252682 0.368542 0.277706 Consensus sequence: DHHBCCCCGCCAHHBHB Reverse complement motif 0.101070 0.368542 0.252682 0.277706 0.404680 0.265028 0.149023 0.181269 0.088118 0.208989 0.454598 0.248295 0.430272 0.274127 0.085171 0.210430 0.240016 0.182848 0.385948 0.191188 0.114531 0.139731 0.110495 0.635243 0.028672 0.012276 0.941477 0.017575 0.003038 0.022449 0.913699 0.060814 0.040252 0.890382 0.050652 0.018713 0.004606 0.034696 0.944933 0.015764 0.047598 0.121957 0.785546 0.044898 0.049351 0.088489 0.759380 0.102780 0.166679 0.081676 0.508939 0.242705 0.210646 0.345010 0.220222 0.224122 0.256473 0.109700 0.409066 0.224761 0.245040 0.287314 0.150829 0.316817 0.471887 0.131779 0.245665 0.150668 Consensus sequence: BHBHDTGGCGGGGBDHD Alignment: DHHBCCCCGCCAHHBHB ---CCGCCGCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00010 Tcfap2b_secondary Reverse Complement Original Motif Forward 4 8 0.029183 Species: Mus musculus Original motif 0.325895 0.099601 0.286848 0.287657 0.177095 0.035123 0.260876 0.526906 0.344850 0.211117 0.015725 0.428308 0.128363 0.059965 0.777560 0.034112 0.048072 0.881624 0.024842 0.045462 0.072628 0.872650 0.011271 0.043451 0.057165 0.162157 0.347719 0.432959 0.015437 0.448405 0.428425 0.107733 0.446877 0.336374 0.099940 0.116809 0.090955 0.023004 0.848240 0.037801 0.040151 0.015072 0.901303 0.043473 0.087378 0.817019 0.027876 0.067727 0.532482 0.021469 0.266773 0.179276 0.325017 0.271661 0.138860 0.264463 0.203625 0.179490 0.143885 0.473001 Consensus sequence: DTWGCCKSMGGCRHH Reverse complement motif 0.473001 0.179490 0.143885 0.203625 0.264463 0.271661 0.138860 0.325017 0.179276 0.021469 0.266773 0.532482 0.087378 0.027876 0.817019 0.067727 0.040151 0.901303 0.015072 0.043473 0.090955 0.848240 0.023004 0.037801 0.116809 0.336374 0.099940 0.446877 0.015437 0.428425 0.448405 0.107733 0.432959 0.162157 0.347719 0.057165 0.072628 0.011271 0.872650 0.043451 0.048072 0.024842 0.881624 0.045462 0.128363 0.777560 0.059965 0.034112 0.428308 0.211117 0.015725 0.344850 0.526906 0.035123 0.260876 0.177095 0.287657 0.099601 0.286848 0.325895 Consensus sequence: HHKGCCYSRGGCWAD Alignment: DTWGCCKSMGGCRHH ---GGCGGCGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Reverse Complement Reverse Complement Backward 5 8 0.029381 Species: Mus musculus Original motif 0.201535 0.165213 0.201324 0.431929 0.136153 0.443451 0.179132 0.241264 0.263149 0.555137 0.067983 0.113731 0.142183 0.737634 0.045722 0.074461 0.044982 0.884112 0.045356 0.025549 0.246434 0.590578 0.022655 0.140333 0.123049 0.591257 0.033072 0.252622 0.018153 0.944742 0.010254 0.026851 0.035459 0.953844 0.003988 0.006709 0.020000 0.954344 0.005966 0.019690 0.015299 0.964390 0.006755 0.013557 0.028565 0.936152 0.011660 0.023623 0.300127 0.517309 0.029700 0.152863 0.159063 0.513443 0.051834 0.275660 0.158172 0.647055 0.133256 0.061516 Consensus sequence: DBCCCCCCCCCCMYC Reverse complement motif 0.158172 0.133256 0.647055 0.061516 0.159063 0.051834 0.513443 0.275660 0.300127 0.029700 0.517309 0.152863 0.028565 0.011660 0.936152 0.023623 0.015299 0.006755 0.964390 0.013557 0.020000 0.005966 0.954344 0.019690 0.035459 0.003988 0.953844 0.006709 0.018153 0.010254 0.944742 0.026851 0.123049 0.033072 0.591257 0.252622 0.246434 0.022655 0.590578 0.140333 0.044982 0.045356 0.884112 0.025549 0.142183 0.045722 0.737634 0.074461 0.263149 0.067983 0.555137 0.113731 0.136153 0.179132 0.443451 0.241264 0.431929 0.165213 0.201324 0.201535 Consensus sequence: GKRGGGGGGGGGGBD Alignment: GKRGGGGGGGGGGBD ---GGCGGCGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00028 Tcfap2e_primary Reverse Complement Reverse Complement Backward 5 8 0.029852 Species: Mus musculus Original motif 0.369517 0.172742 0.163174 0.294567 0.260541 0.211816 0.194359 0.333284 0.292862 0.281323 0.073013 0.352801 0.011777 0.272676 0.697188 0.018359 0.005160 0.983588 0.005917 0.005335 0.002256 0.960488 0.005733 0.031524 0.003735 0.283214 0.123762 0.589290 0.024383 0.379981 0.542999 0.052638 0.589290 0.123762 0.283214 0.003735 0.031524 0.005733 0.960488 0.002256 0.005335 0.005917 0.983588 0.005160 0.018359 0.697188 0.272676 0.011777 0.328286 0.093173 0.334133 0.244408 0.563777 0.145250 0.140240 0.150733 0.263206 0.222321 0.242153 0.272320 Consensus sequence: HHHGCCTSAGGCDAD Reverse complement motif 0.272320 0.222321 0.242153 0.263206 0.150733 0.145250 0.140240 0.563777 0.328286 0.334133 0.093173 0.244408 0.018359 0.272676 0.697188 0.011777 0.005335 0.983588 0.005917 0.005160 0.031524 0.960488 0.005733 0.002256 0.003735 0.123762 0.283214 0.589290 0.024383 0.542999 0.379981 0.052638 0.589290 0.283214 0.123762 0.003735 0.002256 0.005733 0.960488 0.031524 0.005160 0.005917 0.983588 0.005335 0.011777 0.697188 0.272676 0.018359 0.352801 0.281323 0.073013 0.292862 0.333284 0.211816 0.194359 0.260541 0.294567 0.172742 0.163174 0.369517 Consensus sequence: DTHGCCTSAGGCHHH Alignment: DTHGCCTSAGGCHHH ---GGCGGCGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_secondary Reverse Complement Reverse Complement Backward 4 8 0.033391 Species: Mus musculus Original motif 0.265095 0.268267 0.222997 0.243641 0.200676 0.255224 0.341788 0.202312 0.178293 0.362068 0.104617 0.355022 0.351308 0.049870 0.101991 0.496832 0.114543 0.445994 0.008584 0.430879 0.113589 0.020854 0.846807 0.018750 0.004661 0.132010 0.859240 0.004088 0.030896 0.962007 0.004017 0.003080 0.006194 0.002090 0.965564 0.026152 0.008009 0.911831 0.077009 0.003151 0.029519 0.830096 0.011333 0.129053 0.764710 0.016406 0.088627 0.130257 0.530327 0.265186 0.100721 0.103765 0.331689 0.153148 0.308482 0.206682 0.332536 0.311591 0.232118 0.123755 0.175189 0.233372 0.375563 0.215876 0.183884 0.334856 0.283993 0.197267 Consensus sequence: HBHWYGGCGCCAMDVBB Reverse complement motif 0.183884 0.283993 0.334856 0.197267 0.175189 0.375563 0.233372 0.215876 0.123755 0.311591 0.232118 0.332536 0.206682 0.153148 0.308482 0.331689 0.103765 0.265186 0.100721 0.530327 0.130257 0.016406 0.088627 0.764710 0.029519 0.011333 0.830096 0.129053 0.008009 0.077009 0.911831 0.003151 0.006194 0.965564 0.002090 0.026152 0.030896 0.004017 0.962007 0.003080 0.004661 0.859240 0.132010 0.004088 0.113589 0.846807 0.020854 0.018750 0.114543 0.008584 0.445994 0.430879 0.496832 0.049870 0.101991 0.351308 0.178293 0.104617 0.362068 0.355022 0.200676 0.341788 0.255224 0.202312 0.265095 0.222997 0.268267 0.243641 Consensus sequence: BBBDYTGGCGCCKWDBD Alignment: BBBDYTGGCGCCKWDBD ------GGCGGCGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00001 E2F2_secondary Reverse Complement Reverse Complement Forward 7 8 0.034526 Species: Mus musculus Original motif 0.270440 0.280855 0.182254 0.266451 0.232294 0.286577 0.287022 0.194107 0.182719 0.289524 0.187726 0.340031 0.321668 0.055383 0.129604 0.493345 0.105971 0.476989 0.007580 0.409460 0.150172 0.013701 0.803513 0.032614 0.004559 0.194378 0.794741 0.006322 0.047843 0.942269 0.005918 0.003970 0.010089 0.002584 0.946109 0.041218 0.012276 0.865373 0.117935 0.004415 0.045912 0.779220 0.006935 0.167933 0.781965 0.011623 0.113119 0.093293 0.612968 0.172164 0.096061 0.118806 0.357204 0.206997 0.222456 0.213343 0.292059 0.261101 0.279674 0.167166 0.164667 0.173227 0.371882 0.290223 0.157765 0.278892 0.333119 0.230224 Consensus sequence: HVBWYGGCGCCAADVBB Reverse complement motif 0.157765 0.333119 0.278892 0.230224 0.164667 0.371882 0.173227 0.290223 0.167166 0.261101 0.279674 0.292059 0.213343 0.206997 0.222456 0.357204 0.118806 0.172164 0.096061 0.612968 0.093293 0.011623 0.113119 0.781965 0.045912 0.006935 0.779220 0.167933 0.012276 0.117935 0.865373 0.004415 0.010089 0.946109 0.002584 0.041218 0.047843 0.005918 0.942269 0.003970 0.004559 0.794741 0.194378 0.006322 0.150172 0.803513 0.013701 0.032614 0.105971 0.007580 0.476989 0.409460 0.493345 0.055383 0.129604 0.321668 0.340031 0.289524 0.187726 0.182719 0.232294 0.287022 0.286577 0.194107 0.270440 0.182254 0.280855 0.266451 Consensus sequence: BBBDTTGGCGCCKWVVD Alignment: BBBDTTGGCGCCKWVVD ------GGCGGCGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 12 Motif name: Motif 12 Original motif 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.433257 0.566743 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 Consensus sequence: AGGMCAGC Reserve complement motif 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.433257 0.000000 0.566743 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: GCTGRCCT ************************************************************************ Best Matches for Motif ID 12 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00045 Mafb_primary Reverse Complement Original Motif Backward 4 8 0.000000 Species: Mus musculus Original motif 0.420301 0.182299 0.161481 0.235919 0.593201 0.055751 0.202477 0.148571 0.653364 0.017008 0.054630 0.274998 0.339176 0.102943 0.050258 0.507622 0.171557 0.078698 0.267471 0.482273 0.044703 0.033212 0.003920 0.918165 0.010333 0.004451 0.972441 0.012775 0.034026 0.949298 0.004788 0.011889 0.016078 0.008878 0.004007 0.971037 0.020331 0.004077 0.929676 0.045916 0.975739 0.007450 0.005991 0.010819 0.012733 0.887375 0.018700 0.081192 0.259981 0.111885 0.243051 0.385083 0.327677 0.149969 0.094895 0.427459 0.541721 0.105923 0.242224 0.110132 0.258689 0.068305 0.493226 0.179779 0.306041 0.306854 0.168308 0.218798 Consensus sequence: HAAWDTGCTGACDWARH Reverse complement motif 0.306041 0.168308 0.306854 0.218798 0.258689 0.493226 0.068305 0.179779 0.110132 0.105923 0.242224 0.541721 0.427459 0.149969 0.094895 0.327677 0.385083 0.111885 0.243051 0.259981 0.012733 0.018700 0.887375 0.081192 0.010819 0.007450 0.005991 0.975739 0.020331 0.929676 0.004077 0.045916 0.971037 0.008878 0.004007 0.016078 0.034026 0.004788 0.949298 0.011889 0.010333 0.972441 0.004451 0.012775 0.918165 0.033212 0.003920 0.044703 0.482273 0.078698 0.267471 0.171557 0.507622 0.102943 0.050258 0.339176 0.274998 0.017008 0.054630 0.653364 0.148571 0.055751 0.202477 0.593201 0.235919 0.182299 0.161481 0.420301 Consensus sequence: DMTWDGTCAGCADWTTH Alignment: HAAWDTGCTGACDWARH ------GCTGRCCT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00048 Rara Reverse Complement Reverse Complement Forward 3 8 0.001674 Species: Mus musculus Original motif 0.222478 0.177331 0.266395 0.333797 0.276222 0.360097 0.118354 0.245327 0.106047 0.268455 0.234217 0.391281 0.244163 0.407141 0.146864 0.201832 0.852083 0.050643 0.039941 0.057332 0.814108 0.012894 0.165984 0.007015 0.905198 0.005648 0.088378 0.000776 0.002783 0.000555 0.988205 0.008457 0.001289 0.000626 0.898209 0.099877 0.002878 0.001631 0.008910 0.986582 0.000499 0.975550 0.005264 0.018687 0.963627 0.000883 0.034432 0.001058 0.181490 0.517766 0.077094 0.223650 0.183789 0.384790 0.308350 0.123071 0.229801 0.228801 0.224468 0.316930 0.218244 0.170273 0.366746 0.244736 Consensus sequence: DHBHAAAGGTCACVHD Reverse complement motif 0.218244 0.366746 0.170273 0.244736 0.316930 0.228801 0.224468 0.229801 0.183789 0.308350 0.384790 0.123071 0.181490 0.077094 0.517766 0.223650 0.001058 0.000883 0.034432 0.963627 0.000499 0.005264 0.975550 0.018687 0.986582 0.001631 0.008910 0.002878 0.001289 0.898209 0.000626 0.099877 0.002783 0.988205 0.000555 0.008457 0.000776 0.005648 0.088378 0.905198 0.007015 0.012894 0.165984 0.814108 0.057332 0.050643 0.039941 0.852083 0.244163 0.146864 0.407141 0.201832 0.391281 0.268455 0.234217 0.106047 0.276222 0.118354 0.360097 0.245327 0.333797 0.177331 0.266395 0.222478 Consensus sequence: HHVGTGACCTTTDVDD Alignment: HHVGTGACCTTTDVDD --GCTGRCCT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_primary Reverse Complement Reverse Complement Forward 4 8 0.004032 Species: Mus musculus Original motif 0.212524 0.177958 0.293723 0.315796 0.420838 0.283140 0.144938 0.151084 0.198119 0.196347 0.260353 0.345181 0.117752 0.282184 0.137207 0.462857 0.070125 0.781439 0.138093 0.010344 0.965989 0.000956 0.023828 0.009227 0.977263 0.003066 0.019255 0.000416 0.007404 0.000267 0.938934 0.053395 0.007147 0.000287 0.983377 0.009190 0.039608 0.000730 0.040682 0.918981 0.000685 0.905345 0.021930 0.072040 0.800961 0.001126 0.195791 0.002121 0.245039 0.241263 0.038084 0.475614 0.265397 0.238316 0.304963 0.191325 0.203742 0.286208 0.231002 0.279048 0.194132 0.188854 0.346693 0.270322 0.310711 0.263840 0.184317 0.241132 Consensus sequence: DHDBCAAGGTCAHVBDH Reverse complement motif 0.241132 0.263840 0.184317 0.310711 0.194132 0.346693 0.188854 0.270322 0.203742 0.231002 0.286208 0.279048 0.265397 0.304963 0.238316 0.191325 0.475614 0.241263 0.038084 0.245039 0.002121 0.001126 0.195791 0.800961 0.000685 0.021930 0.905345 0.072040 0.918981 0.000730 0.040682 0.039608 0.007147 0.983377 0.000287 0.009190 0.007404 0.938934 0.000267 0.053395 0.000416 0.003066 0.019255 0.977263 0.009227 0.000956 0.023828 0.965989 0.070125 0.138093 0.781439 0.010344 0.462857 0.282184 0.137207 0.117752 0.345181 0.196347 0.260353 0.198119 0.151084 0.283140 0.144938 0.420838 0.315796 0.177958 0.293723 0.212524 Consensus sequence: HHBVHTGACCTTGVDHD Alignment: HHBVHTGACCTTGVDHD ---GCTGRCCT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00122 Tgif1 Original Motif Original Motif Forward 5 8 0.007995 Species: Mus musculus Original motif 0.272977 0.158875 0.284742 0.283406 0.550609 0.124110 0.169608 0.155673 0.114568 0.207160 0.282464 0.395807 0.560868 0.052907 0.053508 0.332716 0.336500 0.068048 0.114050 0.481403 0.007736 0.003722 0.000495 0.988048 0.004489 0.000729 0.992211 0.002571 0.956618 0.000414 0.000890 0.042078 0.004381 0.990925 0.000538 0.004156 0.982797 0.000366 0.015539 0.001298 0.016760 0.002980 0.969991 0.010269 0.036013 0.725983 0.200022 0.037982 0.064755 0.104386 0.133891 0.696968 0.199404 0.263520 0.410228 0.126848 0.222648 0.351390 0.272575 0.153387 0.087778 0.206043 0.395671 0.310507 0.319643 0.144216 0.196041 0.340100 Consensus sequence: DABWWTGACAGCTVVBD Reverse complement motif 0.340100 0.144216 0.196041 0.319643 0.087778 0.395671 0.206043 0.310507 0.222648 0.272575 0.351390 0.153387 0.199404 0.410228 0.263520 0.126848 0.696968 0.104386 0.133891 0.064755 0.036013 0.200022 0.725983 0.037982 0.016760 0.969991 0.002980 0.010269 0.001298 0.000366 0.015539 0.982797 0.004381 0.000538 0.990925 0.004156 0.042078 0.000414 0.000890 0.956618 0.004489 0.992211 0.000729 0.002571 0.988048 0.003722 0.000495 0.007736 0.481403 0.068048 0.114050 0.336500 0.332716 0.052907 0.053508 0.560868 0.395807 0.207160 0.282464 0.114568 0.155673 0.124110 0.169608 0.550609 0.272977 0.284742 0.158875 0.283406 Consensus sequence: DBVVAGCTGTCAWWVTH Alignment: DABWWTGACAGCTVVBD ----AGGMCAGC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_primary Reverse Complement Reverse Complement Forward 3 8 0.008086 Species: Mus musculus Original motif 0.253408 0.181904 0.273186 0.291502 0.262827 0.381870 0.153734 0.201569 0.143383 0.243233 0.242562 0.370823 0.247498 0.336892 0.176114 0.239496 0.856654 0.037068 0.049492 0.056786 0.797369 0.012935 0.176463 0.013233 0.808222 0.001309 0.189796 0.000674 0.002583 0.000536 0.989167 0.007714 0.002421 0.000283 0.972777 0.024519 0.000270 0.003650 0.019038 0.977041 0.000184 0.956654 0.005329 0.037833 0.925587 0.000706 0.072434 0.001273 0.307028 0.327297 0.079126 0.286549 0.238576 0.245847 0.384025 0.131552 0.281599 0.234987 0.226211 0.257204 0.211511 0.212695 0.363980 0.211815 Consensus sequence: DHBHAAAGGTCAHVHB Reverse complement motif 0.211511 0.363980 0.212695 0.211815 0.257204 0.234987 0.226211 0.281599 0.238576 0.384025 0.245847 0.131552 0.307028 0.079126 0.327297 0.286549 0.001273 0.000706 0.072434 0.925587 0.000184 0.005329 0.956654 0.037833 0.977041 0.003650 0.019038 0.000270 0.002421 0.972777 0.000283 0.024519 0.002583 0.989167 0.000536 0.007714 0.000674 0.001309 0.189796 0.808222 0.013233 0.012935 0.176463 0.797369 0.056786 0.037068 0.049492 0.856654 0.247498 0.176114 0.336892 0.239496 0.370823 0.243233 0.242562 0.143383 0.262827 0.153734 0.381870 0.201569 0.291502 0.181904 0.273186 0.253408 Consensus sequence: BHVDTGACCTTTDVDD Alignment: BHVDTGACCTTTDVDD --GCTGRCCT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00035 Hic1_primary Reverse Complement Reverse Complement Backward 4 8 0.014110 Species: Mus musculus Original motif 0.275207 0.211375 0.250277 0.263141 0.135064 0.327571 0.217556 0.319808 0.145659 0.242586 0.267179 0.344576 0.656519 0.009712 0.315174 0.018595 0.002265 0.004755 0.001656 0.991325 0.041873 0.001128 0.955340 0.001659 0.001306 0.974834 0.022215 0.001645 0.001978 0.992066 0.002638 0.003317 0.921032 0.072388 0.001237 0.005344 0.582027 0.211694 0.115736 0.090542 0.005990 0.927450 0.028306 0.038254 0.027374 0.799879 0.053667 0.119080 0.203510 0.191263 0.168997 0.436229 0.402253 0.154087 0.291346 0.152314 0.201201 0.414412 0.145330 0.239056 0.241094 0.332661 0.143464 0.282781 Consensus sequence: DBBATGCCAACCHVHH Reverse complement motif 0.241094 0.143464 0.332661 0.282781 0.201201 0.145330 0.414412 0.239056 0.152314 0.154087 0.291346 0.402253 0.436229 0.191263 0.168997 0.203510 0.027374 0.053667 0.799879 0.119080 0.005990 0.028306 0.927450 0.038254 0.090542 0.211694 0.115736 0.582027 0.005344 0.072388 0.001237 0.921032 0.001978 0.002638 0.992066 0.003317 0.001306 0.022215 0.974834 0.001645 0.041873 0.955340 0.001128 0.001659 0.991325 0.004755 0.001656 0.002265 0.018595 0.009712 0.315174 0.656519 0.344576 0.242586 0.267179 0.145659 0.135064 0.217556 0.327571 0.319808 0.263141 0.211375 0.250277 0.275207 Consensus sequence: DDBHGGTTGGCATVBD Alignment: DDBHGGTTGGCATVBD -----GCTGRCCT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00044 Mafk_primary Reverse Complement Original Motif Forward 8 8 0.014930 Species: Mus musculus Original motif 0.245931 0.193118 0.199428 0.361523 0.489106 0.078574 0.157014 0.275306 0.744659 0.025715 0.102440 0.127186 0.677561 0.030532 0.064134 0.227772 0.621949 0.037389 0.034818 0.305844 0.394828 0.100590 0.123295 0.381287 0.040491 0.082155 0.007425 0.869929 0.023425 0.010118 0.934562 0.031895 0.108761 0.847231 0.005930 0.038078 0.049587 0.025925 0.010216 0.914271 0.048851 0.008289 0.821725 0.121135 0.919694 0.018019 0.017253 0.045033 0.013536 0.716811 0.037362 0.232291 0.148097 0.100721 0.092846 0.658336 0.185674 0.220883 0.168608 0.424835 Consensus sequence: DWAAAWTGCTGACTH Reverse complement motif 0.424835 0.220883 0.168608 0.185674 0.658336 0.100721 0.092846 0.148097 0.013536 0.037362 0.716811 0.232291 0.045033 0.018019 0.017253 0.919694 0.048851 0.821725 0.008289 0.121135 0.914271 0.025925 0.010216 0.049587 0.108761 0.005930 0.847231 0.038078 0.023425 0.934562 0.010118 0.031895 0.869929 0.082155 0.007425 0.040491 0.381287 0.100590 0.123295 0.394828 0.305844 0.037389 0.034818 0.621949 0.227772 0.030532 0.064134 0.677561 0.127186 0.025715 0.102440 0.744659 0.275306 0.078574 0.157014 0.489106 0.361523 0.193118 0.199428 0.245931 Consensus sequence: HAGTCAGCAWTTTWD Alignment: DWAAAWTGCTGACTH -------GCTGRCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00258 Tgif2 Original Motif Reverse Complement Backward 6 8 0.015627 Species: Mus musculus Original motif 0.519684 0.141807 0.112153 0.226356 0.614097 0.079211 0.138045 0.168647 0.186975 0.327654 0.245051 0.240320 0.108289 0.303530 0.219106 0.369076 0.914812 0.012014 0.046628 0.026546 0.070482 0.163253 0.689315 0.076951 0.016354 0.972639 0.003648 0.007359 0.002043 0.018718 0.000384 0.978855 0.006109 0.001408 0.990736 0.001747 0.024783 0.002060 0.000402 0.972755 0.001485 0.991963 0.001756 0.004796 0.989335 0.001052 0.002320 0.007293 0.778804 0.056366 0.037632 0.127198 0.377980 0.094597 0.086888 0.440535 0.458125 0.289431 0.152762 0.099682 0.223103 0.435348 0.216962 0.124587 Consensus sequence: AABBAGCTGTCAAWVV Reverse complement motif 0.223103 0.216962 0.435348 0.124587 0.099682 0.289431 0.152762 0.458125 0.440535 0.094597 0.086888 0.377980 0.127198 0.056366 0.037632 0.778804 0.007293 0.001052 0.002320 0.989335 0.001485 0.001756 0.991963 0.004796 0.972755 0.002060 0.000402 0.024783 0.006109 0.990736 0.001408 0.001747 0.978855 0.018718 0.000384 0.002043 0.016354 0.003648 0.972639 0.007359 0.070482 0.689315 0.163253 0.076951 0.026546 0.012014 0.046628 0.914812 0.369076 0.303530 0.219106 0.108289 0.186975 0.245051 0.327654 0.240320 0.168647 0.079211 0.138045 0.614097 0.226356 0.141807 0.112153 0.519684 Consensus sequence: VBWTTGACAGCTVBTT Alignment: VBWTTGACAGCTVBTT ---AGGMCAGC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00186 Meis1 Original Motif Reverse Complement Backward 6 8 0.017172 Species: Mus musculus Original motif 0.432115 0.114994 0.130835 0.322056 0.508081 0.060822 0.214256 0.216841 0.225875 0.276028 0.280982 0.217115 0.092373 0.286687 0.360933 0.260007 0.947172 0.005937 0.028595 0.018297 0.027829 0.439935 0.505051 0.027185 0.023801 0.963424 0.008205 0.004571 0.001548 0.018215 0.000406 0.979831 0.008422 0.001124 0.989007 0.001446 0.025343 0.004094 0.000241 0.970323 0.001451 0.992789 0.002037 0.003724 0.991202 0.001638 0.003159 0.004002 0.695910 0.022145 0.013657 0.268288 0.357895 0.090931 0.093796 0.457378 0.453163 0.204395 0.181067 0.161376 0.200615 0.393437 0.171398 0.234551 Consensus sequence: WAVBASCTGTCAAWVH Reverse complement motif 0.200615 0.171398 0.393437 0.234551 0.161376 0.204395 0.181067 0.453163 0.457378 0.090931 0.093796 0.357895 0.268288 0.022145 0.013657 0.695910 0.004002 0.001638 0.003159 0.991202 0.001451 0.002037 0.992789 0.003724 0.970323 0.004094 0.000241 0.025343 0.008422 0.989007 0.001124 0.001446 0.979831 0.018215 0.000406 0.001548 0.023801 0.008205 0.963424 0.004571 0.027829 0.505051 0.439935 0.027185 0.018297 0.005937 0.028595 0.947172 0.092373 0.360933 0.286687 0.260007 0.225875 0.280982 0.276028 0.217115 0.216841 0.060822 0.214256 0.508081 0.322056 0.114994 0.130835 0.432115 Consensus sequence: DBWTTGACAGSTBVTW Alignment: DBWTTGACAGSTBVTW ---AGGMCAGC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00103 Jundm2_primary Reverse Complement Reverse Complement Backward 7 8 0.021506 Species: Mus musculus Original motif 0.213023 0.312553 0.241727 0.232696 0.126878 0.453780 0.251405 0.167937 0.127927 0.138541 0.528637 0.204895 0.572671 0.136079 0.242107 0.049142 0.004569 0.015235 0.003215 0.976981 0.004594 0.008024 0.836426 0.150956 0.966548 0.003255 0.009947 0.020250 0.001636 0.899650 0.004880 0.093834 0.093834 0.004880 0.899650 0.001636 0.020250 0.009947 0.003255 0.966548 0.150956 0.836426 0.008024 0.004594 0.976981 0.003215 0.015235 0.004569 0.006508 0.324308 0.040126 0.629058 0.170728 0.554933 0.116757 0.157582 0.255966 0.170983 0.430910 0.142142 0.228601 0.267456 0.166199 0.337744 Consensus sequence: BBGATGACGTCAYCVH Reverse complement motif 0.337744 0.267456 0.166199 0.228601 0.255966 0.430910 0.170983 0.142142 0.170728 0.116757 0.554933 0.157582 0.629058 0.324308 0.040126 0.006508 0.004569 0.003215 0.015235 0.976981 0.150956 0.008024 0.836426 0.004594 0.966548 0.009947 0.003255 0.020250 0.093834 0.899650 0.004880 0.001636 0.001636 0.004880 0.899650 0.093834 0.020250 0.003255 0.009947 0.966548 0.004594 0.836426 0.008024 0.150956 0.976981 0.015235 0.003215 0.004569 0.049142 0.136079 0.242107 0.572671 0.127927 0.528637 0.138541 0.204895 0.126878 0.251405 0.453780 0.167937 0.213023 0.241727 0.312553 0.232696 Consensus sequence: HVGMTGACGTCATCBB Alignment: HVGMTGACGTCATCBB --GCTGRCCT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 13 Motif name: Motif 13 Original motif 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.538023 0.000000 0.461977 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.406084 0.000000 0.593916 0.000000 Consensus sequence: GAGRCAGR Reserve complement motif 0.406084 0.593916 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.461977 0.538023 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 Consensus sequence: MCTGKCTC ************************************************************************ Best Matches for Motif ID 13 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00205 Pknox2 Reverse Complement Original Motif Forward 6 8 0.000000 Species: Mus musculus Original motif 0.428425 0.195557 0.163102 0.212916 0.596487 0.103248 0.171370 0.128895 0.255216 0.203813 0.424426 0.116546 0.034183 0.441823 0.347767 0.176227 0.613880 0.025627 0.347719 0.012774 0.028636 0.551817 0.409264 0.010283 0.020873 0.969731 0.003025 0.006371 0.001171 0.039795 0.000323 0.958710 0.004303 0.001241 0.992873 0.001583 0.014490 0.007334 0.000309 0.977866 0.000873 0.991756 0.001920 0.005451 0.979609 0.000960 0.015793 0.003638 0.586289 0.199905 0.051181 0.162625 0.207586 0.157832 0.051564 0.583018 0.295651 0.262238 0.182998 0.259112 0.158213 0.267067 0.215259 0.359461 Consensus sequence: HAVSRSCTGTCAATHB Reverse complement motif 0.359461 0.267067 0.215259 0.158213 0.259112 0.262238 0.182998 0.295651 0.583018 0.157832 0.051564 0.207586 0.162625 0.199905 0.051181 0.586289 0.003638 0.000960 0.015793 0.979609 0.000873 0.001920 0.991756 0.005451 0.977866 0.007334 0.000309 0.014490 0.004303 0.992873 0.001241 0.001583 0.958710 0.039795 0.000323 0.001171 0.020873 0.003025 0.969731 0.006371 0.028636 0.409264 0.551817 0.010283 0.012774 0.025627 0.347719 0.613880 0.034183 0.347767 0.441823 0.176227 0.255216 0.424426 0.203813 0.116546 0.128895 0.103248 0.171370 0.596487 0.212916 0.195557 0.163102 0.428425 Consensus sequence: VHATTGACAGSKSVTH Alignment: HAVSRSCTGTCAATHB -----MCTGKCTC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00203 Pknox1 Reverse Complement Original Motif Forward 6 8 0.002436 Species: Mus musculus Original motif 0.436259 0.086706 0.169714 0.307321 0.433826 0.063296 0.358082 0.144795 0.324190 0.284651 0.208786 0.182372 0.054648 0.285295 0.518967 0.141090 0.922874 0.012239 0.042656 0.022231 0.036668 0.581917 0.338993 0.042422 0.021599 0.968542 0.006920 0.002939 0.001846 0.026071 0.000271 0.971812 0.007232 0.000773 0.989645 0.002350 0.019103 0.005771 0.000209 0.974917 0.001535 0.989111 0.000852 0.008502 0.989698 0.000915 0.004907 0.004480 0.679114 0.077050 0.037931 0.205904 0.330007 0.110122 0.067993 0.491878 0.286458 0.421726 0.186579 0.105236 0.199258 0.473968 0.173008 0.153766 Consensus sequence: DRVSASCTGTCAAWVV Reverse complement motif 0.199258 0.173008 0.473968 0.153766 0.286458 0.186579 0.421726 0.105236 0.491878 0.110122 0.067993 0.330007 0.205904 0.077050 0.037931 0.679114 0.004480 0.000915 0.004907 0.989698 0.001535 0.000852 0.989111 0.008502 0.974917 0.005771 0.000209 0.019103 0.007232 0.989645 0.000773 0.002350 0.971812 0.026071 0.000271 0.001846 0.021599 0.006920 0.968542 0.002939 0.036668 0.338993 0.581917 0.042422 0.022231 0.012239 0.042656 0.922874 0.054648 0.518967 0.285295 0.141090 0.182372 0.284651 0.208786 0.324190 0.144795 0.063296 0.358082 0.433826 0.307321 0.086706 0.169714 0.436259 Consensus sequence: VVWTTGACAGSTSBKD Alignment: DRVSASCTGTCAAWVV -----MCTGKCTC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00226 Mrg1 Reverse Complement Original Motif Forward 6 8 0.005328 Species: Mus musculus Original motif 0.378836 0.145096 0.102046 0.374022 0.507161 0.090730 0.177058 0.225051 0.277496 0.234581 0.275775 0.212149 0.065300 0.339403 0.360939 0.234358 0.918963 0.010948 0.043262 0.026826 0.017295 0.545133 0.416603 0.020969 0.023391 0.962223 0.007311 0.007075 0.001760 0.020258 0.000360 0.977622 0.013946 0.000586 0.983699 0.001769 0.035910 0.004825 0.000197 0.959068 0.001465 0.991446 0.001338 0.005750 0.986785 0.001158 0.005848 0.006209 0.715894 0.043046 0.018966 0.222093 0.332332 0.084841 0.098421 0.484405 0.473739 0.198580 0.152072 0.175610 0.211505 0.325971 0.212211 0.250313 Consensus sequence: WAVBASCTGTCAAWHB Reverse complement motif 0.211505 0.212211 0.325971 0.250313 0.175610 0.198580 0.152072 0.473739 0.484405 0.084841 0.098421 0.332332 0.222093 0.043046 0.018966 0.715894 0.006209 0.001158 0.005848 0.986785 0.001465 0.001338 0.991446 0.005750 0.959068 0.004825 0.000197 0.035910 0.013946 0.983699 0.000586 0.001769 0.977622 0.020258 0.000360 0.001760 0.023391 0.007311 0.962223 0.007075 0.017295 0.416603 0.545133 0.020969 0.026826 0.010948 0.043262 0.918963 0.065300 0.360939 0.339403 0.234358 0.212149 0.234581 0.275775 0.277496 0.225051 0.090730 0.177058 0.507161 0.374022 0.145096 0.102046 0.378836 Consensus sequence: BHWTTGACAGSTBBTW Alignment: WAVBASCTGTCAAWHB -----MCTGKCTC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00210 Mrg2 Reverse Complement Original Motif Forward 6 8 0.008473 Species: Mus musculus Original motif 0.451361 0.129344 0.139593 0.279702 0.590642 0.061045 0.179638 0.168676 0.264848 0.211505 0.252514 0.271134 0.108876 0.280056 0.299987 0.311081 0.771098 0.021050 0.148609 0.059244 0.030292 0.505912 0.423702 0.040094 0.053400 0.869563 0.021964 0.055073 0.001749 0.029333 0.000487 0.968430 0.007267 0.000536 0.989450 0.002747 0.031237 0.006659 0.000558 0.961545 0.001520 0.992342 0.001637 0.004501 0.976582 0.004910 0.010811 0.007697 0.640869 0.062002 0.032830 0.264299 0.318843 0.128253 0.123096 0.429808 0.432137 0.269895 0.155457 0.142512 0.247124 0.427480 0.147164 0.178233 Consensus sequence: DADBASCTGTCAAHVH Reverse complement motif 0.247124 0.147164 0.427480 0.178233 0.142512 0.269895 0.155457 0.432137 0.429808 0.128253 0.123096 0.318843 0.264299 0.062002 0.032830 0.640869 0.007697 0.004910 0.010811 0.976582 0.001520 0.001637 0.992342 0.004501 0.961545 0.006659 0.000558 0.031237 0.007267 0.989450 0.000536 0.002747 0.968430 0.029333 0.000487 0.001749 0.053400 0.021964 0.869563 0.055073 0.030292 0.423702 0.505912 0.040094 0.059244 0.021050 0.148609 0.771098 0.311081 0.280056 0.299987 0.108876 0.271134 0.211505 0.252514 0.264848 0.168676 0.061045 0.179638 0.590642 0.279702 0.129344 0.139593 0.451361 Consensus sequence: DBHTTGACAGSTVDTD Alignment: DADBASCTGTCAAHVH -----MCTGKCTC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00186 Meis1 Reverse Complement Original Motif Forward 6 8 0.008693 Species: Mus musculus Original motif 0.432115 0.114994 0.130835 0.322056 0.508081 0.060822 0.214256 0.216841 0.225875 0.276028 0.280982 0.217115 0.092373 0.286687 0.360933 0.260007 0.947172 0.005937 0.028595 0.018297 0.027829 0.439935 0.505051 0.027185 0.023801 0.963424 0.008205 0.004571 0.001548 0.018215 0.000406 0.979831 0.008422 0.001124 0.989007 0.001446 0.025343 0.004094 0.000241 0.970323 0.001451 0.992789 0.002037 0.003724 0.991202 0.001638 0.003159 0.004002 0.695910 0.022145 0.013657 0.268288 0.357895 0.090931 0.093796 0.457378 0.453163 0.204395 0.181067 0.161376 0.200615 0.393437 0.171398 0.234551 Consensus sequence: WAVBASCTGTCAAWVH Reverse complement motif 0.200615 0.171398 0.393437 0.234551 0.161376 0.204395 0.181067 0.453163 0.457378 0.090931 0.093796 0.357895 0.268288 0.022145 0.013657 0.695910 0.004002 0.001638 0.003159 0.991202 0.001451 0.002037 0.992789 0.003724 0.970323 0.004094 0.000241 0.025343 0.008422 0.989007 0.001124 0.001446 0.979831 0.018215 0.000406 0.001548 0.023801 0.008205 0.963424 0.004571 0.027829 0.505051 0.439935 0.027185 0.018297 0.005937 0.028595 0.947172 0.092373 0.360933 0.286687 0.260007 0.225875 0.280982 0.276028 0.217115 0.216841 0.060822 0.214256 0.508081 0.322056 0.114994 0.130835 0.432115 Consensus sequence: DBWTTGACAGSTBVTW Alignment: WAVBASCTGTCAAWVH -----MCTGKCTC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_primary Original Motif Original Motif Forward 7 8 0.009197 Species: Mus musculus Original motif 0.282316 0.413385 0.114930 0.189369 0.341654 0.135011 0.267943 0.255392 0.399523 0.173081 0.168845 0.258551 0.365086 0.196360 0.211856 0.226699 0.243321 0.177839 0.224206 0.354635 0.029873 0.808479 0.036309 0.125339 0.004945 0.815465 0.040635 0.138955 0.934557 0.058944 0.005027 0.001471 0.005099 0.003998 0.986148 0.004755 0.969304 0.020594 0.001929 0.008173 0.008189 0.984816 0.004199 0.002795 0.669579 0.012182 0.282153 0.036085 0.130511 0.171241 0.334041 0.364207 0.198982 0.289660 0.252392 0.258966 0.423172 0.190978 0.164411 0.221440 0.213519 0.287388 0.294414 0.204679 0.371956 0.285061 0.150191 0.192792 Consensus sequence: HDHDDCCAGACABBHVH Reverse complement motif 0.192792 0.285061 0.150191 0.371956 0.213519 0.294414 0.287388 0.204679 0.221440 0.190978 0.164411 0.423172 0.198982 0.252392 0.289660 0.258966 0.364207 0.171241 0.334041 0.130511 0.036085 0.012182 0.282153 0.669579 0.008189 0.004199 0.984816 0.002795 0.008173 0.020594 0.001929 0.969304 0.005099 0.986148 0.003998 0.004755 0.001471 0.058944 0.005027 0.934557 0.004945 0.040635 0.815465 0.138955 0.029873 0.036309 0.808479 0.125339 0.354635 0.177839 0.224206 0.243321 0.226699 0.196360 0.211856 0.365086 0.258551 0.173081 0.168845 0.399523 0.255392 0.135011 0.267943 0.341654 0.282316 0.114930 0.413385 0.189369 Consensus sequence: HVHBVTGTCTGGDDHDD Alignment: HDHDDCCAGACABBHVH ------GAGRCAGR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00103 Jundm2_secondary Original Motif Reverse Complement Forward 6 8 0.009682 Species: Mus musculus Original motif 0.330782 0.277751 0.217248 0.174219 0.254084 0.133750 0.268028 0.344139 0.102715 0.138642 0.266735 0.491907 0.211090 0.115754 0.489453 0.183704 0.634392 0.029243 0.325725 0.010641 0.004585 0.006792 0.004564 0.984059 0.003235 0.005036 0.896873 0.094857 0.914016 0.069061 0.002354 0.014569 0.011308 0.444033 0.533844 0.010815 0.007986 0.005770 0.003251 0.982993 0.043876 0.948120 0.005054 0.002950 0.985583 0.003417 0.008056 0.002944 0.017035 0.521313 0.032053 0.429599 0.331412 0.414679 0.097833 0.156076 0.317623 0.218390 0.235348 0.228638 0.308376 0.291095 0.191412 0.209116 Consensus sequence: VDKDRTGASTCAYHDH Reverse complement motif 0.209116 0.291095 0.191412 0.308376 0.228638 0.218390 0.235348 0.317623 0.331412 0.097833 0.414679 0.156076 0.017035 0.032053 0.521313 0.429599 0.002944 0.003417 0.008056 0.985583 0.043876 0.005054 0.948120 0.002950 0.982993 0.005770 0.003251 0.007986 0.011308 0.533844 0.444033 0.010815 0.014569 0.069061 0.002354 0.914016 0.003235 0.896873 0.005036 0.094857 0.984059 0.006792 0.004564 0.004585 0.010641 0.029243 0.325725 0.634392 0.211090 0.489453 0.115754 0.183704 0.491907 0.138642 0.266735 0.102715 0.344139 0.133750 0.268028 0.254084 0.174219 0.277751 0.217248 0.330782 Consensus sequence: HDDKTGASTCAKHRDB Alignment: HDDKTGASTCAKHRDB -----GAGRCAGR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00095 Zfp691_secondary Reverse Complement Original Motif Forward 3 8 0.011091 Species: Mus musculus Original motif 0.236868 0.155338 0.295091 0.312703 0.522782 0.133021 0.177386 0.166812 0.192915 0.374870 0.221406 0.210809 0.146546 0.199196 0.418035 0.236223 0.454326 0.095049 0.151770 0.298855 0.027956 0.023096 0.878335 0.070614 0.916030 0.020358 0.039894 0.023717 0.010595 0.938036 0.039415 0.011954 0.007271 0.014948 0.007990 0.969792 0.014291 0.964878 0.011126 0.009705 0.154586 0.759294 0.050151 0.035969 0.051021 0.268239 0.053410 0.627330 0.158293 0.386843 0.113152 0.341713 0.281766 0.184139 0.187916 0.346179 0.292444 0.267259 0.241323 0.198974 0.425732 0.262331 0.149076 0.162861 0.205385 0.384164 0.267912 0.142538 Consensus sequence: DABBWGACTCCTHDVHV Reverse complement motif 0.205385 0.267912 0.384164 0.142538 0.162861 0.262331 0.149076 0.425732 0.198974 0.267259 0.241323 0.292444 0.346179 0.184139 0.187916 0.281766 0.158293 0.113152 0.386843 0.341713 0.627330 0.268239 0.053410 0.051021 0.154586 0.050151 0.759294 0.035969 0.014291 0.011126 0.964878 0.009705 0.969792 0.014948 0.007990 0.007271 0.010595 0.039415 0.938036 0.011954 0.023717 0.020358 0.039894 0.916030 0.027956 0.878335 0.023096 0.070614 0.298855 0.095049 0.151770 0.454326 0.146546 0.418035 0.199196 0.236223 0.192915 0.221406 0.374870 0.210809 0.166812 0.133021 0.177386 0.522782 0.312703 0.155338 0.295091 0.236868 Consensus sequence: VHBDDAGGAGTCWBBTD Alignment: DABBWGACTCCTHDVHV --MCTGKCTC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00122 Tgif1 Original Motif Original Motif Forward 5 8 0.012586 Species: Mus musculus Original motif 0.272977 0.158875 0.284742 0.283406 0.550609 0.124110 0.169608 0.155673 0.114568 0.207160 0.282464 0.395807 0.560868 0.052907 0.053508 0.332716 0.336500 0.068048 0.114050 0.481403 0.007736 0.003722 0.000495 0.988048 0.004489 0.000729 0.992211 0.002571 0.956618 0.000414 0.000890 0.042078 0.004381 0.990925 0.000538 0.004156 0.982797 0.000366 0.015539 0.001298 0.016760 0.002980 0.969991 0.010269 0.036013 0.725983 0.200022 0.037982 0.064755 0.104386 0.133891 0.696968 0.199404 0.263520 0.410228 0.126848 0.222648 0.351390 0.272575 0.153387 0.087778 0.206043 0.395671 0.310507 0.319643 0.144216 0.196041 0.340100 Consensus sequence: DABWWTGACAGCTVVBD Reverse complement motif 0.340100 0.144216 0.196041 0.319643 0.087778 0.395671 0.206043 0.310507 0.222648 0.272575 0.351390 0.153387 0.199404 0.410228 0.263520 0.126848 0.696968 0.104386 0.133891 0.064755 0.036013 0.200022 0.725983 0.037982 0.016760 0.969991 0.002980 0.010269 0.001298 0.000366 0.015539 0.982797 0.004381 0.000538 0.990925 0.004156 0.042078 0.000414 0.000890 0.956618 0.004489 0.992211 0.000729 0.002571 0.988048 0.003722 0.000495 0.007736 0.481403 0.068048 0.114050 0.336500 0.332716 0.052907 0.053508 0.560868 0.395807 0.207160 0.282464 0.114568 0.155673 0.124110 0.169608 0.550609 0.272977 0.284742 0.158875 0.283406 Consensus sequence: DBVVAGCTGTCAWWVTH Alignment: DABWWTGACAGCTVVBD ----GAGRCAGR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00258 Tgif2 Reverse Complement Original Motif Backward 4 8 0.014543 Species: Mus musculus Original motif 0.519684 0.141807 0.112153 0.226356 0.614097 0.079211 0.138045 0.168647 0.186975 0.327654 0.245051 0.240320 0.108289 0.303530 0.219106 0.369076 0.914812 0.012014 0.046628 0.026546 0.070482 0.163253 0.689315 0.076951 0.016354 0.972639 0.003648 0.007359 0.002043 0.018718 0.000384 0.978855 0.006109 0.001408 0.990736 0.001747 0.024783 0.002060 0.000402 0.972755 0.001485 0.991963 0.001756 0.004796 0.989335 0.001052 0.002320 0.007293 0.778804 0.056366 0.037632 0.127198 0.377980 0.094597 0.086888 0.440535 0.458125 0.289431 0.152762 0.099682 0.223103 0.435348 0.216962 0.124587 Consensus sequence: AABBAGCTGTCAAWVV Reverse complement motif 0.223103 0.216962 0.435348 0.124587 0.099682 0.289431 0.152762 0.458125 0.440535 0.094597 0.086888 0.377980 0.127198 0.056366 0.037632 0.778804 0.007293 0.001052 0.002320 0.989335 0.001485 0.001756 0.991963 0.004796 0.972755 0.002060 0.000402 0.024783 0.006109 0.990736 0.001408 0.001747 0.978855 0.018718 0.000384 0.002043 0.016354 0.003648 0.972639 0.007359 0.070482 0.689315 0.163253 0.076951 0.026546 0.012014 0.046628 0.914812 0.369076 0.303530 0.219106 0.108289 0.186975 0.245051 0.327654 0.240320 0.168647 0.079211 0.138045 0.614097 0.226356 0.141807 0.112153 0.519684 Consensus sequence: VBWTTGACAGCTVBTT Alignment: AABBAGCTGTCAAWVV -----MCTGKCTC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 14 Motif name: Motif 14 Original motif 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.571268 0.000000 0.428732 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.539843 0.000000 0.460157 0.000000 0.000000 1.000000 0.000000 0.000000 Consensus sequence: GCRCACRC Reserve complement motif 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.460157 0.539843 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.428732 0.571268 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 Consensus sequence: GKGTGKGC ************************************************************************ Best Matches for Motif ID 14 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_second Original Motif Original Motif Forward 5 8 0.000000 Species: Mus musculus Original motif 0.360404 0.193218 0.248888 0.197490 0.286498 0.224597 0.426555 0.062349 0.347032 0.440548 0.033161 0.179259 0.337062 0.193658 0.385751 0.083529 0.108793 0.005723 0.878300 0.007184 0.015151 0.973406 0.009324 0.002118 0.972117 0.003915 0.019783 0.004185 0.010144 0.980912 0.003106 0.005839 0.974864 0.007532 0.015914 0.001691 0.012441 0.939195 0.029256 0.019108 0.759620 0.106164 0.073819 0.060397 0.157234 0.818234 0.007449 0.017083 0.050076 0.063608 0.505171 0.381144 0.131903 0.538163 0.124608 0.205325 0.367623 0.286526 0.240931 0.104919 0.357798 0.317606 0.097711 0.226885 Consensus sequence: DVMVGCACACACKCVH Reverse complement motif 0.226885 0.317606 0.097711 0.357798 0.104919 0.286526 0.240931 0.367623 0.131903 0.124608 0.538163 0.205325 0.050076 0.505171 0.063608 0.381144 0.157234 0.007449 0.818234 0.017083 0.060397 0.106164 0.073819 0.759620 0.012441 0.029256 0.939195 0.019108 0.001691 0.007532 0.015914 0.974864 0.010144 0.003106 0.980912 0.005839 0.004185 0.003915 0.019783 0.972117 0.015151 0.009324 0.973406 0.002118 0.108793 0.878300 0.005723 0.007184 0.337062 0.385751 0.193658 0.083529 0.347032 0.033161 0.440548 0.179259 0.286498 0.426555 0.224597 0.062349 0.197490 0.193218 0.248888 0.360404 Consensus sequence: HBGYGTGTGTGCVRVD Alignment: DVMVGCACACACKCVH ----GCRCACRC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00097 Mtf1_primary Original Motif Reverse Complement Forward 6 8 0.026124 Species: Mus musculus Original motif 0.220880 0.102939 0.418146 0.258035 0.154303 0.210788 0.420671 0.214238 0.229141 0.160788 0.412818 0.197253 0.167193 0.404248 0.092489 0.336070 0.025978 0.931335 0.023830 0.018857 0.009150 0.002023 0.977342 0.011485 0.044768 0.024113 0.039091 0.892028 0.007577 0.008370 0.973767 0.010286 0.005251 0.264996 0.004018 0.725735 0.009165 0.002428 0.980566 0.007841 0.021296 0.956027 0.008893 0.013784 0.982532 0.003341 0.005773 0.008353 0.500983 0.226027 0.143944 0.129045 0.544466 0.285936 0.044719 0.124879 0.321158 0.168428 0.261827 0.248587 0.271460 0.263221 0.199083 0.266236 Consensus sequence: DBDHCGTGTGCAAMDH Reverse complement motif 0.266236 0.263221 0.199083 0.271460 0.248587 0.168428 0.261827 0.321158 0.124879 0.285936 0.044719 0.544466 0.129045 0.226027 0.143944 0.500983 0.008353 0.003341 0.005773 0.982532 0.021296 0.008893 0.956027 0.013784 0.009165 0.980566 0.002428 0.007841 0.725735 0.264996 0.004018 0.005251 0.007577 0.973767 0.008370 0.010286 0.892028 0.024113 0.039091 0.044768 0.009150 0.977342 0.002023 0.011485 0.025978 0.023830 0.931335 0.018857 0.167193 0.092489 0.404248 0.336070 0.229141 0.412818 0.160788 0.197253 0.154303 0.420671 0.210788 0.214238 0.220880 0.418146 0.102939 0.258035 Consensus sequence: HDYTTGCACACGDHBH Alignment: HDYTTGCACACGDHBH -----GCRCACRC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Reverse Complement Original Motif Forward 9 8 0.032978 Species: Mus musculus Original motif 0.204923 0.208846 0.365383 0.220848 0.294304 0.300143 0.167287 0.238266 0.109711 0.619514 0.117379 0.153396 0.178979 0.378580 0.230177 0.212264 0.159594 0.542602 0.118178 0.179627 0.125206 0.430074 0.151826 0.292894 0.097692 0.709845 0.116956 0.075506 0.148292 0.565912 0.037632 0.248164 0.077951 0.034190 0.855503 0.032356 0.001657 0.001061 0.971877 0.025405 0.001926 0.001084 0.991712 0.005278 0.033031 0.012001 0.057796 0.897171 0.002723 0.002647 0.993348 0.001281 0.003261 0.000963 0.987199 0.008577 0.000611 0.090925 0.074857 0.833608 0.015299 0.978878 0.004949 0.000874 0.013368 0.600902 0.033485 0.352245 0.231949 0.149575 0.118804 0.499672 0.267580 0.186002 0.371242 0.175176 0.264884 0.223483 0.110082 0.401551 0.221365 0.170121 0.179559 0.428955 0.112997 0.692930 0.139981 0.054092 0.460305 0.207883 0.155111 0.176702 Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Reverse complement motif 0.176702 0.207883 0.155111 0.460305 0.112997 0.139981 0.692930 0.054092 0.428955 0.170121 0.179559 0.221365 0.401551 0.223483 0.110082 0.264884 0.267580 0.371242 0.186002 0.175176 0.499672 0.149575 0.118804 0.231949 0.013368 0.033485 0.600902 0.352245 0.015299 0.004949 0.978878 0.000874 0.833608 0.090925 0.074857 0.000611 0.003261 0.987199 0.000963 0.008577 0.002723 0.993348 0.002647 0.001281 0.897171 0.012001 0.057796 0.033031 0.001926 0.991712 0.001084 0.005278 0.001657 0.971877 0.001061 0.025405 0.077951 0.855503 0.034190 0.032356 0.148292 0.037632 0.565912 0.248164 0.097692 0.116956 0.709845 0.075506 0.125206 0.151826 0.430074 0.292894 0.159594 0.118178 0.542602 0.179627 0.178979 0.230177 0.378580 0.212264 0.109711 0.117379 0.619514 0.153396 0.294304 0.167287 0.300143 0.238266 0.204923 0.365383 0.208846 0.220848 Consensus sequence: HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH --------GKGTGKGC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primary Reverse Complement Reverse Complement Backward 9 8 0.034112 Species: Mus musculus Original motif 0.180868 0.321661 0.134642 0.362829 0.232215 0.134289 0.315356 0.318141 0.065068 0.093681 0.569842 0.271408 0.370822 0.229680 0.154738 0.244759 0.323039 0.182873 0.173588 0.320500 0.175039 0.266898 0.276080 0.281984 0.412669 0.147730 0.146326 0.293275 0.325953 0.028805 0.629596 0.015646 0.003017 0.001766 0.979711 0.015507 0.888973 0.040666 0.069420 0.000941 0.017309 0.979155 0.000899 0.002637 0.001732 0.988816 0.004856 0.004596 0.889763 0.078125 0.010384 0.021729 0.007566 0.987081 0.001421 0.003932 0.027797 0.966593 0.000878 0.004731 0.025816 0.867003 0.065749 0.041433 0.220658 0.075256 0.582904 0.121182 0.088946 0.283695 0.565345 0.062015 0.328012 0.241332 0.305901 0.124755 0.307302 0.137589 0.375928 0.179181 0.298752 0.231470 0.315255 0.154524 0.094565 0.142901 0.705696 0.056838 Consensus sequence: HDGHHBHRGACCACCCGSVDVG Reverse complement motif 0.094565 0.705696 0.142901 0.056838 0.298752 0.315255 0.231470 0.154524 0.307302 0.375928 0.137589 0.179181 0.124755 0.241332 0.305901 0.328012 0.088946 0.565345 0.283695 0.062015 0.220658 0.582904 0.075256 0.121182 0.025816 0.065749 0.867003 0.041433 0.027797 0.000878 0.966593 0.004731 0.007566 0.001421 0.987081 0.003932 0.021729 0.078125 0.010384 0.889763 0.001732 0.004856 0.988816 0.004596 0.017309 0.000899 0.979155 0.002637 0.000941 0.040666 0.069420 0.888973 0.003017 0.979711 0.001766 0.015507 0.325953 0.629596 0.028805 0.015646 0.293275 0.147730 0.146326 0.412669 0.281984 0.266898 0.276080 0.175039 0.320500 0.182873 0.173588 0.323039 0.244759 0.229680 0.154738 0.370822 0.065068 0.569842 0.093681 0.271408 0.318141 0.134289 0.315356 0.232215 0.362829 0.321661 0.134642 0.180868 Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH Alignment: CVHBSCGGGTGGTCMHVHHCDH ------GKGTGKGC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00026 Zscan4_secondary Original Motif Original Motif Forward 5 8 0.035158 Species: Mus musculus Original motif 0.275231 0.387763 0.112851 0.224155 0.269193 0.327669 0.360934 0.042204 0.439403 0.233641 0.022359 0.304596 0.409796 0.139856 0.390450 0.059899 0.038409 0.011231 0.936209 0.014150 0.067382 0.909014 0.021244 0.002359 0.962897 0.009563 0.009687 0.017854 0.043757 0.937596 0.007648 0.010999 0.970698 0.005379 0.016825 0.007098 0.066033 0.636556 0.043955 0.253456 0.797406 0.066726 0.011988 0.123879 0.774632 0.121694 0.017773 0.085901 0.324017 0.235408 0.213365 0.227210 0.365796 0.192247 0.134547 0.307410 0.299601 0.246867 0.098395 0.355137 0.328229 0.242048 0.251143 0.178579 Consensus sequence: HVHRGCACACAAHHHV Reverse complement motif 0.178579 0.242048 0.251143 0.328229 0.355137 0.246867 0.098395 0.299601 0.307410 0.192247 0.134547 0.365796 0.227210 0.235408 0.213365 0.324017 0.085901 0.121694 0.017773 0.774632 0.123879 0.066726 0.011988 0.797406 0.066033 0.043955 0.636556 0.253456 0.007098 0.005379 0.016825 0.970698 0.043757 0.007648 0.937596 0.010999 0.017854 0.009563 0.009687 0.962897 0.067382 0.021244 0.909014 0.002359 0.038409 0.936209 0.011231 0.014150 0.059899 0.139856 0.390450 0.409796 0.304596 0.233641 0.022359 0.439403 0.269193 0.360934 0.327669 0.042204 0.275231 0.112851 0.387763 0.224155 Consensus sequence: BHHHTTGTGTGCKHVD Alignment: HVHRGCACACAAHHHV ----GCRCACRC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_primary Reverse Complement Reverse Complement Forward 9 8 0.035398 Species: Mus musculus Original motif 0.137831 0.118922 0.394177 0.349070 0.190108 0.163633 0.138507 0.507753 0.346002 0.332315 0.228621 0.093063 0.113254 0.287554 0.373285 0.225908 0.272578 0.125402 0.328963 0.273057 0.333973 0.115165 0.194267 0.356595 0.381054 0.086215 0.501679 0.031052 0.002232 0.007405 0.966087 0.024276 0.834741 0.112115 0.052053 0.001091 0.009034 0.983239 0.000766 0.006960 0.002054 0.988103 0.003138 0.006705 0.805772 0.171299 0.008415 0.014515 0.020076 0.976846 0.000894 0.002183 0.079914 0.917273 0.001179 0.001634 0.013983 0.950545 0.004205 0.031267 0.789407 0.039441 0.108645 0.062507 0.055453 0.161271 0.595249 0.188028 0.333424 0.128169 0.373270 0.165136 0.536103 0.109520 0.062980 0.291397 0.346477 0.090909 0.279533 0.283081 0.045892 0.190183 0.584314 0.179611 0.088294 0.406148 0.251647 0.253912 0.202467 0.447159 0.162802 0.187571 Consensus sequence: DTVBDDRGACCACCCAGDWDGBH Reverse complement motif 0.202467 0.162802 0.447159 0.187571 0.088294 0.251647 0.406148 0.253912 0.045892 0.584314 0.190183 0.179611 0.283081 0.090909 0.279533 0.346477 0.291397 0.109520 0.062980 0.536103 0.333424 0.373270 0.128169 0.165136 0.055453 0.595249 0.161271 0.188028 0.062507 0.039441 0.108645 0.789407 0.013983 0.004205 0.950545 0.031267 0.079914 0.001179 0.917273 0.001634 0.020076 0.000894 0.976846 0.002183 0.014515 0.171299 0.008415 0.805772 0.002054 0.003138 0.988103 0.006705 0.009034 0.000766 0.983239 0.006960 0.001091 0.112115 0.052053 0.834741 0.002232 0.966087 0.007405 0.024276 0.381054 0.501679 0.086215 0.031052 0.356595 0.115165 0.194267 0.333973 0.272578 0.328963 0.125402 0.273057 0.113254 0.373285 0.287554 0.225908 0.093063 0.332315 0.228621 0.346002 0.507753 0.163633 0.138507 0.190108 0.137831 0.394177 0.118922 0.349070 Consensus sequence: DBCDWHCTGGGTGGTCMDHBBAH Alignment: DBCDWHCTGGGTGGTCMDHBBAH --------GKGTGKGC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primary Reverse Complement Reverse Complement Backward 8 8 0.035941 Species: Mus musculus Original motif 0.183797 0.268049 0.330111 0.218043 0.127599 0.330310 0.243614 0.298477 0.143199 0.188046 0.268593 0.400162 0.214690 0.205230 0.247090 0.332990 0.294688 0.299104 0.327152 0.079056 0.221909 0.193223 0.480155 0.104712 0.444072 0.068239 0.481838 0.005852 0.006182 0.015429 0.901278 0.077111 0.766535 0.111138 0.121632 0.000696 0.014848 0.973961 0.000298 0.010893 0.001807 0.992200 0.002669 0.003324 0.795344 0.140510 0.018576 0.045571 0.006990 0.988200 0.002510 0.002299 0.154898 0.842296 0.000998 0.001808 0.029577 0.919262 0.006935 0.044226 0.677987 0.032075 0.185065 0.104874 0.195132 0.364580 0.319321 0.120967 0.225412 0.115034 0.612849 0.046705 0.548628 0.058900 0.162857 0.229616 0.112531 0.340331 0.165910 0.381227 0.073029 0.303078 0.363896 0.259997 0.561485 0.260567 0.092979 0.084969 0.132283 0.457691 0.140159 0.269867 Consensus sequence: BBBDVVRGACCACCCAVGABBAB Reverse complement motif 0.132283 0.140159 0.457691 0.269867 0.084969 0.260567 0.092979 0.561485 0.073029 0.363896 0.303078 0.259997 0.381227 0.340331 0.165910 0.112531 0.229616 0.058900 0.162857 0.548628 0.225412 0.612849 0.115034 0.046705 0.195132 0.319321 0.364580 0.120967 0.104874 0.032075 0.185065 0.677987 0.029577 0.006935 0.919262 0.044226 0.154898 0.000998 0.842296 0.001808 0.006990 0.002510 0.988200 0.002299 0.045571 0.140510 0.018576 0.795344 0.001807 0.002669 0.992200 0.003324 0.014848 0.000298 0.973961 0.010893 0.000696 0.111138 0.121632 0.766535 0.006182 0.901278 0.015429 0.077111 0.444072 0.481838 0.068239 0.005852 0.221909 0.480155 0.193223 0.104712 0.294688 0.327152 0.299104 0.079056 0.332990 0.205230 0.247090 0.214690 0.400162 0.188046 0.268593 0.143199 0.127599 0.243614 0.330310 0.298477 0.183797 0.330111 0.268049 0.218043 Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB Alignment: BTBVTCVTGGGTGGTCMVVDVBB --------GKGTGKGC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primary Reverse Complement Reverse Complement Forward 7 8 0.036079 Species: Mus musculus Original motif 0.472795 0.179227 0.091251 0.256726 0.036521 0.159743 0.204840 0.598896 0.164582 0.312805 0.221324 0.301289 0.237069 0.249050 0.293048 0.220833 0.401949 0.225181 0.229401 0.143469 0.161422 0.494334 0.252207 0.092036 0.252940 0.177721 0.369400 0.199939 0.119630 0.024651 0.849920 0.005798 0.000962 0.002398 0.990616 0.006023 0.937852 0.027016 0.034535 0.000597 0.008963 0.987756 0.000629 0.002652 0.001584 0.992898 0.002349 0.003169 0.956822 0.027342 0.002484 0.013352 0.009873 0.987759 0.000988 0.001381 0.016397 0.980856 0.000369 0.002378 0.081761 0.758555 0.038572 0.121112 0.371713 0.091838 0.448027 0.088423 0.111617 0.121913 0.683885 0.082585 0.334562 0.102916 0.436488 0.126034 0.210362 0.101261 0.238339 0.450037 0.169041 0.271583 0.320799 0.238576 0.140316 0.049885 0.735236 0.074563 Consensus sequence: HTBVVVDGGACCACCCRGRDBG Reverse complement motif 0.140316 0.735236 0.049885 0.074563 0.169041 0.320799 0.271583 0.238576 0.450037 0.101261 0.238339 0.210362 0.334562 0.436488 0.102916 0.126034 0.111617 0.683885 0.121913 0.082585 0.371713 0.448027 0.091838 0.088423 0.081761 0.038572 0.758555 0.121112 0.016397 0.000369 0.980856 0.002378 0.009873 0.000988 0.987759 0.001381 0.013352 0.027342 0.002484 0.956822 0.001584 0.002349 0.992898 0.003169 0.008963 0.000629 0.987756 0.002652 0.000597 0.027016 0.034535 0.937852 0.000962 0.990616 0.002398 0.006023 0.119630 0.849920 0.024651 0.005798 0.252940 0.369400 0.177721 0.199939 0.161422 0.252207 0.494334 0.092036 0.143469 0.225181 0.229401 0.401949 0.237069 0.293048 0.249050 0.220833 0.164582 0.221324 0.312805 0.301289 0.598896 0.159743 0.204840 0.036521 0.256726 0.179227 0.091251 0.472795 Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH Alignment: CBDMCMGGGTGGTCCHVBVBAH ------GKGTGKGC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_primary Original Motif Original Motif Backward 3 8 0.037668 Species: Mus musculus Original motif 0.248614 0.321010 0.201723 0.228654 0.332381 0.190810 0.184854 0.291955 0.253802 0.119338 0.331394 0.295466 0.577827 0.100884 0.130066 0.191223 0.180374 0.011174 0.042942 0.765510 0.009131 0.024996 0.962422 0.003450 0.003308 0.034731 0.002930 0.959032 0.063907 0.001099 0.933714 0.001280 0.001280 0.933714 0.001099 0.063907 0.959032 0.002930 0.034731 0.003308 0.003450 0.962422 0.024996 0.009131 0.765510 0.042942 0.011174 0.180374 0.026456 0.256356 0.130672 0.586516 0.589555 0.285548 0.036864 0.088034 0.265828 0.529813 0.031915 0.172445 0.209015 0.104817 0.374275 0.311892 0.224283 0.292805 0.144270 0.338642 Consensus sequence: HHDATGTGCACATAMDH Reverse complement motif 0.338642 0.292805 0.144270 0.224283 0.209015 0.374275 0.104817 0.311892 0.265828 0.031915 0.529813 0.172445 0.088034 0.285548 0.036864 0.589555 0.586516 0.256356 0.130672 0.026456 0.180374 0.042942 0.011174 0.765510 0.003450 0.024996 0.962422 0.009131 0.003308 0.002930 0.034731 0.959032 0.001280 0.001099 0.933714 0.063907 0.063907 0.933714 0.001099 0.001280 0.959032 0.034731 0.002930 0.003308 0.009131 0.962422 0.024996 0.003450 0.765510 0.011174 0.042942 0.180374 0.191223 0.100884 0.130066 0.577827 0.253802 0.331394 0.119338 0.295466 0.291955 0.190810 0.184854 0.332381 0.248614 0.201723 0.321010 0.228654 Consensus sequence: HHRTATGTGCACATHHD Alignment: HHDATGTGCACATAMDH -------GCRCACRC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primary Reverse Complement Reverse Complement Backward 9 8 0.038166 Species: Mus musculus Original motif 0.641428 0.180211 0.044767 0.133594 0.171696 0.262981 0.334148 0.231174 0.129726 0.322735 0.243462 0.304077 0.165713 0.175735 0.256108 0.402445 0.146090 0.171890 0.412753 0.269266 0.212837 0.439192 0.280990 0.066980 0.251088 0.275516 0.374380 0.099015 0.575438 0.079656 0.338201 0.006704 0.005634 0.003422 0.972597 0.018348 0.890447 0.077034 0.031851 0.000668 0.007128 0.986862 0.000496 0.005515 0.001445 0.991564 0.001925 0.005066 0.738761 0.190157 0.026399 0.044684 0.013384 0.983783 0.000896 0.001937 0.068077 0.929549 0.000773 0.001602 0.040830 0.933742 0.005283 0.020145 0.730274 0.029225 0.145689 0.094812 0.165032 0.572838 0.162001 0.100129 0.383584 0.129942 0.429497 0.056977 0.455959 0.071959 0.208204 0.263878 0.134271 0.262985 0.222626 0.380117 0.071193 0.346594 0.346081 0.236132 0.445661 0.405278 0.053901 0.095160 Consensus sequence: ABBBBVVRGACCACCCACRDBBM Reverse complement motif 0.095160 0.405278 0.053901 0.445661 0.071193 0.346081 0.346594 0.236132 0.380117 0.262985 0.222626 0.134271 0.263878 0.071959 0.208204 0.455959 0.383584 0.429497 0.129942 0.056977 0.165032 0.162001 0.572838 0.100129 0.094812 0.029225 0.145689 0.730274 0.040830 0.005283 0.933742 0.020145 0.068077 0.000773 0.929549 0.001602 0.013384 0.000896 0.983783 0.001937 0.044684 0.190157 0.026399 0.738761 0.001445 0.001925 0.991564 0.005066 0.007128 0.000496 0.986862 0.005515 0.000668 0.077034 0.031851 0.890447 0.005634 0.972597 0.003422 0.018348 0.006704 0.079656 0.338201 0.575438 0.251088 0.374380 0.275516 0.099015 0.212837 0.280990 0.439192 0.066980 0.146090 0.412753 0.171890 0.269266 0.402445 0.175735 0.256108 0.165713 0.129726 0.243462 0.322735 0.304077 0.171696 0.334148 0.262981 0.231174 0.133594 0.180211 0.044767 0.641428 Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT Alignment: YBVDMGTGGGTGGTCKVVBVBBT -------GKGTGKGC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 15 Motif name: Motif 15 Original motif 0.000000 0.000000 1.000000 0.000000 0.501938 0.000000 0.498062 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.317136 0.000000 0.682864 0.000000 Consensus sequence: GRAAATG Reserve complement motif 0.317136 0.682864 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.498062 0.501938 0.000000 1.000000 0.000000 0.000000 Consensus sequence: CATTTKC ************************************************************************ Best Matches for Motif ID 15 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00179 Pou2f3 Reverse Complement Reverse Complement Backward 7 7 0.000000 Species: Mus musculus Original motif 0.163923 0.199410 0.196283 0.440385 0.244854 0.217834 0.151102 0.386210 0.185934 0.134662 0.398787 0.280618 0.090352 0.119462 0.037157 0.753030 0.990346 0.001754 0.001818 0.006083 0.002450 0.011715 0.002154 0.983680 0.002638 0.001114 0.938678 0.057569 0.002016 0.911319 0.003818 0.082847 0.740177 0.001090 0.002005 0.256728 0.905415 0.001757 0.014660 0.078168 0.987356 0.003190 0.001846 0.007608 0.016362 0.004807 0.016312 0.962520 0.153576 0.155400 0.290074 0.400950 0.455331 0.242511 0.111337 0.190822 0.293425 0.163528 0.350203 0.192844 0.411723 0.243796 0.182398 0.162083 Consensus sequence: BHDTATGCAAATBHDV Reverse complement motif 0.162083 0.243796 0.182398 0.411723 0.293425 0.350203 0.163528 0.192844 0.190822 0.242511 0.111337 0.455331 0.400950 0.155400 0.290074 0.153576 0.962520 0.004807 0.016312 0.016362 0.007608 0.003190 0.001846 0.987356 0.078168 0.001757 0.014660 0.905415 0.256728 0.001090 0.002005 0.740177 0.002016 0.003818 0.911319 0.082847 0.002638 0.938678 0.001114 0.057569 0.983680 0.011715 0.002154 0.002450 0.006083 0.001754 0.001818 0.990346 0.753030 0.119462 0.037157 0.090352 0.185934 0.398787 0.134662 0.280618 0.386210 0.217834 0.151102 0.244854 0.440385 0.199410 0.196283 0.163923 Consensus sequence: BHHVATTTGCATAHHV Alignment: BHHVATTTGCATAHHV ---CATTTKC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00191 Pou2f2 Reverse Complement Reverse Complement Backward 7 7 0.002465 Species: Mus musculus Original motif 0.143441 0.268530 0.212213 0.375817 0.267386 0.204043 0.174256 0.354316 0.230583 0.148604 0.348518 0.272295 0.127633 0.095216 0.030997 0.746154 0.987721 0.002410 0.003474 0.006395 0.003588 0.019280 0.002951 0.974182 0.005844 0.003199 0.919428 0.071529 0.004446 0.890754 0.005987 0.098813 0.743311 0.001562 0.003671 0.251456 0.893912 0.003008 0.014228 0.088852 0.982166 0.003049 0.002708 0.012076 0.027054 0.005668 0.023977 0.943301 0.197736 0.122428 0.271727 0.408108 0.496910 0.196661 0.105572 0.200857 0.347287 0.129915 0.369062 0.153737 0.409641 0.236160 0.215425 0.138774 Consensus sequence: BHDTATGCAAATDHDV Reverse complement motif 0.138774 0.236160 0.215425 0.409641 0.347287 0.369062 0.129915 0.153737 0.200857 0.196661 0.105572 0.496910 0.408108 0.122428 0.271727 0.197736 0.943301 0.005668 0.023977 0.027054 0.012076 0.003049 0.002708 0.982166 0.088852 0.003008 0.014228 0.893912 0.251456 0.001562 0.003671 0.743311 0.004446 0.005987 0.890754 0.098813 0.005844 0.919428 0.003199 0.071529 0.974182 0.019280 0.002951 0.003588 0.006395 0.002410 0.003474 0.987721 0.746154 0.095216 0.030997 0.127633 0.230583 0.348518 0.148604 0.272295 0.354316 0.204043 0.174256 0.267386 0.375817 0.268530 0.212213 0.143441 Consensus sequence: BHHDATTTGCATAHHV Alignment: BHHDATTTGCATAHHV ---CATTTKC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00424 Gm4881 Original Motif Reverse Complement Forward 7 7 0.018559 Species: Mus musculus Original motif 0.329653 0.202372 0.295939 0.172036 0.115902 0.257124 0.275681 0.351293 0.166218 0.287124 0.323101 0.223557 0.362654 0.226006 0.172880 0.238460 0.763083 0.011021 0.209049 0.016847 0.002627 0.453407 0.008750 0.535216 0.114520 0.002235 0.003479 0.879767 0.008768 0.002063 0.001821 0.987348 0.002319 0.990917 0.003213 0.003552 0.002458 0.990806 0.002092 0.004645 0.002211 0.005454 0.950960 0.041374 0.055418 0.054277 0.859284 0.031021 0.116069 0.088611 0.037729 0.757591 0.342397 0.173151 0.180376 0.304077 0.246785 0.140058 0.440199 0.172957 0.287474 0.183857 0.212951 0.315718 Consensus sequence: VBBHAYTTCCGGTDDD Reverse complement motif 0.315718 0.183857 0.212951 0.287474 0.246785 0.440199 0.140058 0.172957 0.304077 0.173151 0.180376 0.342397 0.757591 0.088611 0.037729 0.116069 0.055418 0.859284 0.054277 0.031021 0.002211 0.950960 0.005454 0.041374 0.002458 0.002092 0.990806 0.004645 0.002319 0.003213 0.990917 0.003552 0.987348 0.002063 0.001821 0.008768 0.879767 0.002235 0.003479 0.114520 0.535216 0.453407 0.008750 0.002627 0.016847 0.011021 0.209049 0.763083 0.238460 0.226006 0.172880 0.362654 0.166218 0.323101 0.287124 0.223557 0.351293 0.257124 0.275681 0.115902 0.172036 0.202372 0.295939 0.329653 Consensus sequence: DHDACCGGAAMTHBVB Alignment: DHDACCGGAAMTHBVB ------GRAAATG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00090 Elf3_primary Original Motif Original Motif Backward 2 7 0.020638 Species: Mus musculus Original motif 0.338918 0.138284 0.180304 0.342493 0.614328 0.046536 0.066645 0.272492 0.248636 0.405469 0.125813 0.220081 0.389942 0.368832 0.198252 0.042975 0.473107 0.443315 0.064884 0.018693 0.032285 0.005365 0.952727 0.009624 0.021365 0.006895 0.955827 0.015913 0.976258 0.006536 0.010998 0.006209 0.892027 0.007456 0.003678 0.096839 0.433755 0.037682 0.520487 0.008076 0.098931 0.159997 0.023691 0.717381 0.423164 0.077419 0.201004 0.298413 0.572262 0.158763 0.164963 0.104012 Consensus sequence: DAHMMGGAARTDA Reverse complement motif 0.104012 0.158763 0.164963 0.572262 0.298413 0.077419 0.201004 0.423164 0.717381 0.159997 0.023691 0.098931 0.433755 0.520487 0.037682 0.008076 0.096839 0.007456 0.003678 0.892027 0.006209 0.006536 0.010998 0.976258 0.021365 0.955827 0.006895 0.015913 0.032285 0.952727 0.005365 0.009624 0.018693 0.443315 0.064884 0.473107 0.042975 0.368832 0.198252 0.389942 0.248636 0.125813 0.405469 0.220081 0.272492 0.046536 0.066645 0.614328 0.342493 0.138284 0.180304 0.338918 Consensus sequence: TDAMTTCCYYDTD Alignment: DAHMMGGAARTDA -----GRAAATG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00013 Gabpa_primary Original Motif Original Motif Forward 8 7 0.021396 Species: Mus musculus Original motif 0.347579 0.362501 0.122567 0.167353 0.291516 0.289483 0.243331 0.175670 0.444682 0.202283 0.117720 0.235315 0.286823 0.160493 0.154998 0.397686 0.777207 0.031168 0.138668 0.052958 0.020187 0.935458 0.041166 0.003190 0.044954 0.947416 0.006517 0.001112 0.004962 0.002315 0.991007 0.001716 0.002572 0.002766 0.992355 0.002307 0.989037 0.001723 0.001769 0.007471 0.898665 0.004213 0.001115 0.096007 0.219936 0.020606 0.754552 0.004906 0.021686 0.134459 0.014432 0.829423 0.197325 0.176901 0.362465 0.263309 0.245978 0.264865 0.197336 0.291821 0.323340 0.203013 0.195793 0.277854 0.279355 0.250354 0.250472 0.219819 Consensus sequence: HVHHACCGGAAGTDHHV Reverse complement motif 0.219819 0.250354 0.250472 0.279355 0.277854 0.203013 0.195793 0.323340 0.291821 0.264865 0.197336 0.245978 0.197325 0.362465 0.176901 0.263309 0.829423 0.134459 0.014432 0.021686 0.219936 0.754552 0.020606 0.004906 0.096007 0.004213 0.001115 0.898665 0.007471 0.001723 0.001769 0.989037 0.002572 0.992355 0.002766 0.002307 0.004962 0.991007 0.002315 0.001716 0.044954 0.006517 0.947416 0.001112 0.020187 0.041166 0.935458 0.003190 0.052958 0.031168 0.138668 0.777207 0.397686 0.160493 0.154998 0.286823 0.235315 0.202283 0.117720 0.444682 0.175670 0.289483 0.243331 0.291516 0.347579 0.122567 0.362501 0.167353 Consensus sequence: BHHHACTTCCGGTHHBD Alignment: HVHHACCGGAAGTDHHV -------GRAAATG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00015 Ehf_secondary Original Motif Reverse Complement Backward 4 7 0.023738 Species: Mus musculus Original motif 0.307205 0.034440 0.106635 0.551720 0.363403 0.109044 0.178564 0.348988 0.296409 0.241179 0.359666 0.102746 0.239304 0.113815 0.274725 0.372156 0.742404 0.063158 0.121573 0.072864 0.160692 0.233592 0.260062 0.345653 0.073999 0.014007 0.012486 0.899508 0.074874 0.014298 0.009907 0.900921 0.022623 0.925966 0.008378 0.043033 0.027723 0.921907 0.020088 0.030282 0.029405 0.074965 0.595500 0.300130 0.776422 0.083024 0.041124 0.099429 0.270188 0.158044 0.134940 0.436827 0.070564 0.545506 0.345463 0.038467 0.316962 0.128938 0.151826 0.402274 0.327940 0.106122 0.104097 0.461841 Consensus sequence: WDVDABTTCCKAHSDW Reverse complement motif 0.461841 0.106122 0.104097 0.327940 0.402274 0.128938 0.151826 0.316962 0.070564 0.345463 0.545506 0.038467 0.436827 0.158044 0.134940 0.270188 0.099429 0.083024 0.041124 0.776422 0.029405 0.595500 0.074965 0.300130 0.027723 0.020088 0.921907 0.030282 0.022623 0.008378 0.925966 0.043033 0.900921 0.014298 0.009907 0.074874 0.899508 0.014007 0.012486 0.073999 0.345653 0.233592 0.260062 0.160692 0.072864 0.063158 0.121573 0.742404 0.372156 0.113815 0.274725 0.239304 0.296409 0.359666 0.241179 0.102746 0.348988 0.109044 0.178564 0.363403 0.551720 0.034440 0.106635 0.307205 Consensus sequence: WDSHTYGGAAVTDVDW Alignment: WDSHTYGGAAVTDVDW ------GRAAATG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00409 Elf5 Original Motif Original Motif Forward 7 7 0.024202 Species: Mus musculus Original motif 0.179167 0.229135 0.279326 0.312372 0.421239 0.102900 0.145609 0.330252 0.791978 0.009721 0.028951 0.169350 0.237609 0.375543 0.161526 0.225321 0.145845 0.325411 0.516045 0.012699 0.431007 0.516333 0.051679 0.000982 0.005750 0.001408 0.990928 0.001915 0.002025 0.001886 0.992021 0.004068 0.986405 0.001705 0.001039 0.010851 0.950652 0.003619 0.000482 0.045248 0.165221 0.013897 0.819076 0.001805 0.032042 0.049374 0.014632 0.903953 0.285325 0.108010 0.127373 0.479292 0.366131 0.141246 0.290661 0.201963 Consensus sequence: BWAHSMGGAAGTWD Reverse complement motif 0.201963 0.141246 0.290661 0.366131 0.479292 0.108010 0.127373 0.285325 0.903953 0.049374 0.014632 0.032042 0.165221 0.819076 0.013897 0.001805 0.045248 0.003619 0.000482 0.950652 0.010851 0.001705 0.001039 0.986405 0.002025 0.992021 0.001886 0.004068 0.005750 0.990928 0.001408 0.001915 0.431007 0.051679 0.516333 0.000982 0.145845 0.516045 0.325411 0.012699 0.237609 0.161526 0.375543 0.225321 0.169350 0.009721 0.028951 0.791978 0.330252 0.102900 0.145609 0.421239 0.312372 0.229135 0.279326 0.179167 Consensus sequence: DWACTTCCRSDTWV Alignment: BWAHSMGGAAGTWD ------GRAAATG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00419 Spic Original Motif Original Motif Forward 7 7 0.025337 Species: Mus musculus Original motif 0.372554 0.181557 0.296001 0.149888 0.734552 0.057250 0.044752 0.163446 0.707604 0.045049 0.110341 0.137006 0.637848 0.057252 0.071934 0.232966 0.125449 0.108933 0.689441 0.076176 0.266215 0.517339 0.207018 0.009428 0.015016 0.002582 0.979670 0.002732 0.004303 0.002322 0.989973 0.003401 0.982327 0.003552 0.003393 0.010727 0.974155 0.001662 0.003294 0.020889 0.040023 0.128522 0.821560 0.009894 0.027635 0.045828 0.016297 0.910239 0.317500 0.045635 0.172234 0.464631 0.342838 0.107812 0.284775 0.264576 Consensus sequence: VAAAGMGGAAGTWD Reverse complement motif 0.264576 0.107812 0.284775 0.342838 0.464631 0.045635 0.172234 0.317500 0.910239 0.045828 0.016297 0.027635 0.040023 0.821560 0.128522 0.009894 0.020889 0.001662 0.003294 0.974155 0.010727 0.003552 0.003393 0.982327 0.004303 0.989973 0.002322 0.003401 0.015016 0.979670 0.002582 0.002732 0.266215 0.207018 0.517339 0.009428 0.125449 0.689441 0.108933 0.076176 0.232966 0.057252 0.071934 0.637848 0.137006 0.045049 0.110341 0.707604 0.163446 0.057250 0.044752 0.734552 0.149888 0.181557 0.296001 0.372554 Consensus sequence: DWACTTCCRCTTTB Alignment: VAAAGMGGAAGTWD ------GRAAATG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00414 Ets1 Original Motif Original Motif Backward 3 7 0.026000 Species: Mus musculus Original motif 0.185517 0.352264 0.234781 0.227438 0.267475 0.153636 0.374632 0.204257 0.209599 0.165342 0.278644 0.346414 0.223668 0.129204 0.369628 0.277501 0.215373 0.320617 0.160255 0.303754 0.836593 0.030586 0.105229 0.027592 0.018622 0.916166 0.063271 0.001942 0.137490 0.857089 0.004870 0.000551 0.002748 0.001698 0.993222 0.002332 0.003309 0.001651 0.993223 0.001817 0.990419 0.000878 0.002565 0.006138 0.815068 0.016317 0.001274 0.167342 0.373416 0.011725 0.613373 0.001487 0.124276 0.194676 0.025016 0.656033 0.359192 0.227478 0.212937 0.200393 0.314691 0.211253 0.233074 0.240981 0.285894 0.131047 0.225562 0.357496 Consensus sequence: BDDDHACCGGAARTVDD Reverse complement motif 0.357496 0.131047 0.225562 0.285894 0.240981 0.211253 0.233074 0.314691 0.200393 0.227478 0.212937 0.359192 0.656033 0.194676 0.025016 0.124276 0.373416 0.613373 0.011725 0.001487 0.167342 0.016317 0.001274 0.815068 0.006138 0.000878 0.002565 0.990419 0.003309 0.993223 0.001651 0.001817 0.002748 0.993222 0.001698 0.002332 0.137490 0.004870 0.857089 0.000551 0.018622 0.063271 0.916166 0.001942 0.027592 0.030586 0.105229 0.836593 0.215373 0.160255 0.320617 0.303754 0.223668 0.369628 0.129204 0.277501 0.346414 0.165342 0.278644 0.209599 0.267475 0.374632 0.153636 0.204257 0.185517 0.234781 0.352264 0.227438 Consensus sequence: DDBAMTTCCGGTDHDHB Alignment: BDDDHACCGGAARTVDD --------GRAAATG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00015 Ehf_primary Original Motif Original Motif Backward 2 7 0.027278 Species: Mus musculus Original motif 0.327238 0.304037 0.232174 0.136551 0.198306 0.222758 0.316421 0.262515 0.252373 0.217079 0.267210 0.263337 0.633781 0.039800 0.036914 0.289504 0.160405 0.384709 0.220671 0.234215 0.134205 0.590541 0.266074 0.009179 0.210933 0.755978 0.030378 0.002710 0.011856 0.001472 0.984138 0.002533 0.003235 0.001605 0.989465 0.005695 0.984189 0.002418 0.002842 0.010551 0.884492 0.002651 0.002095 0.110762 0.249047 0.054607 0.690939 0.005407 0.124602 0.154669 0.047597 0.673132 0.375217 0.110561 0.230374 0.283848 0.402951 0.186789 0.219551 0.190710 Consensus sequence: VBDABCCGGAAGTDD Reverse complement motif 0.190710 0.186789 0.219551 0.402951 0.283848 0.110561 0.230374 0.375217 0.673132 0.154669 0.047597 0.124602 0.249047 0.690939 0.054607 0.005407 0.110762 0.002651 0.002095 0.884492 0.010551 0.002418 0.002842 0.984189 0.003235 0.989465 0.001605 0.005695 0.011856 0.984138 0.001472 0.002533 0.210933 0.030378 0.755978 0.002710 0.134205 0.266074 0.590541 0.009179 0.160405 0.220671 0.384709 0.234215 0.289504 0.039800 0.036914 0.633781 0.252373 0.267210 0.217079 0.263337 0.198306 0.316421 0.222758 0.262515 0.136551 0.304037 0.232174 0.327238 Consensus sequence: DDACTTCCGGBTHBB Alignment: VBDABCCGGAAGTDD -------GRAAATG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 16 Motif name: Motif 16 Original motif 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.450796 0.061285 0.256335 0.231585 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 Consensus sequence: CTGDGTTC Reserve complement motif 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.231585 0.061285 0.256335 0.450796 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: GAACDCAG ************************************************************************ Best Matches for Motif ID 16 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00019 Zbtb12_primary Original Motif Original Motif Backward 9 8 0.015703 Species: Mus musculus Original motif 0.163348 0.349811 0.273573 0.213268 0.212612 0.211975 0.220400 0.355012 0.325879 0.220972 0.186720 0.266430 0.510632 0.041115 0.419323 0.028930 0.067550 0.203499 0.411224 0.317727 0.023546 0.002038 0.972278 0.002138 0.017818 0.006841 0.006478 0.968864 0.019791 0.001443 0.009338 0.969428 0.003084 0.992130 0.002654 0.002131 0.001031 0.039768 0.003588 0.955613 0.980811 0.006260 0.008964 0.003965 0.013624 0.002796 0.979716 0.003863 0.841198 0.016422 0.129217 0.013163 0.169265 0.145424 0.085753 0.599558 0.068235 0.584950 0.065758 0.281057 0.378189 0.252218 0.209355 0.160238 0.167389 0.305726 0.229730 0.297156 Consensus sequence: BDHRBGTTCTAGATCVB Reverse complement motif 0.167389 0.229730 0.305726 0.297156 0.160238 0.252218 0.209355 0.378189 0.068235 0.065758 0.584950 0.281057 0.599558 0.145424 0.085753 0.169265 0.013163 0.016422 0.129217 0.841198 0.013624 0.979716 0.002796 0.003863 0.003965 0.006260 0.008964 0.980811 0.955613 0.039768 0.003588 0.001031 0.003084 0.002654 0.992130 0.002131 0.969428 0.001443 0.009338 0.019791 0.968864 0.006841 0.006478 0.017818 0.023546 0.972278 0.002038 0.002138 0.067550 0.411224 0.203499 0.317727 0.028930 0.041115 0.419323 0.510632 0.266430 0.220972 0.186720 0.325879 0.355012 0.211975 0.220400 0.212612 0.163348 0.273573 0.349811 0.213268 Consensus sequence: BBGATCTAGAACBKHDB Alignment: BDHRBGTTCTAGATCVB -CTGDGTTC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00006 Zic3_secondary Reverse Complement Original Motif Backward 8 8 0.020142 Species: Mus musculus Original motif 0.225537 0.223459 0.280507 0.270498 0.332396 0.181810 0.207290 0.278505 0.309873 0.017922 0.386135 0.286070 0.101947 0.871607 0.020267 0.006179 0.541366 0.089100 0.242170 0.127364 0.003307 0.969997 0.002414 0.024283 0.903286 0.021590 0.015872 0.059253 0.039887 0.009732 0.945083 0.005298 0.001704 0.827209 0.006276 0.164810 0.723052 0.003102 0.221051 0.052795 0.011758 0.024398 0.560633 0.403211 0.003656 0.012952 0.939586 0.043807 0.477846 0.270399 0.113113 0.138642 0.225706 0.298505 0.258523 0.217266 0.365251 0.191780 0.197411 0.245557 Consensus sequence: DDDCACAGCAKGHVD Reverse complement motif 0.245557 0.191780 0.197411 0.365251 0.225706 0.258523 0.298505 0.217266 0.138642 0.270399 0.113113 0.477846 0.003656 0.939586 0.012952 0.043807 0.011758 0.560633 0.024398 0.403211 0.052795 0.003102 0.221051 0.723052 0.001704 0.006276 0.827209 0.164810 0.039887 0.945083 0.009732 0.005298 0.059253 0.021590 0.015872 0.903286 0.003307 0.002414 0.969997 0.024283 0.127364 0.089100 0.242170 0.541366 0.101947 0.020267 0.871607 0.006179 0.309873 0.386135 0.017922 0.286070 0.278505 0.181810 0.207290 0.332396 0.225537 0.280507 0.223459 0.270498 Consensus sequence: DVHCYTGCTGTGHDH Alignment: DDDCACAGCAKGHVD GAACDCAG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00102 Zic1_secondary Reverse Complement Original Motif Backward 8 8 0.021759 Species: Mus musculus Original motif 0.161683 0.405114 0.171743 0.261460 0.259478 0.357988 0.146793 0.235741 0.371334 0.026439 0.283598 0.318630 0.092229 0.883389 0.018758 0.005623 0.419591 0.169874 0.253266 0.157270 0.002985 0.976375 0.002722 0.017918 0.909381 0.021357 0.013299 0.055963 0.039418 0.007014 0.948302 0.005266 0.001711 0.845894 0.005756 0.146640 0.803792 0.003049 0.148687 0.044472 0.015314 0.017153 0.680239 0.287294 0.003793 0.011414 0.937403 0.047390 0.431916 0.266291 0.144154 0.157638 0.269331 0.239338 0.366817 0.124513 0.395873 0.103980 0.214796 0.285351 Consensus sequence: BHDCVCAGCAGGHVD Reverse complement motif 0.285351 0.103980 0.214796 0.395873 0.269331 0.366817 0.239338 0.124513 0.157638 0.266291 0.144154 0.431916 0.003793 0.937403 0.011414 0.047390 0.015314 0.680239 0.017153 0.287294 0.044472 0.003049 0.148687 0.803792 0.001711 0.005756 0.845894 0.146640 0.039418 0.948302 0.007014 0.005266 0.055963 0.021357 0.013299 0.909381 0.002985 0.002722 0.976375 0.017918 0.157270 0.169874 0.253266 0.419591 0.092229 0.018758 0.883389 0.005623 0.318630 0.026439 0.283598 0.371334 0.259478 0.146793 0.357988 0.235741 0.161683 0.171743 0.405114 0.261460 Consensus sequence: DVHCCTGCTGBGDDB Alignment: BHDCVCAGCAGGHVD GAACDCAG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_secondary Original Motif Reverse Complement Forward 8 8 0.023842 Species: Mus musculus Original motif 0.201522 0.336845 0.183740 0.277892 0.238705 0.354378 0.165332 0.241585 0.350858 0.031427 0.308482 0.309233 0.104423 0.870794 0.018676 0.006107 0.313246 0.259944 0.277570 0.149241 0.003590 0.973377 0.002520 0.020513 0.899716 0.025489 0.015458 0.059336 0.049224 0.006415 0.938214 0.006147 0.002021 0.859631 0.007903 0.130445 0.772818 0.002659 0.187334 0.037190 0.008456 0.015170 0.594695 0.381679 0.004118 0.009188 0.961506 0.025188 0.367151 0.230955 0.204475 0.197419 0.267508 0.193660 0.430070 0.108762 0.444449 0.099127 0.212182 0.244241 Consensus sequence: HHDCVCAGCAKGVVD Reverse complement motif 0.244241 0.099127 0.212182 0.444449 0.267508 0.430070 0.193660 0.108762 0.197419 0.230955 0.204475 0.367151 0.004118 0.961506 0.009188 0.025188 0.008456 0.594695 0.015170 0.381679 0.037190 0.002659 0.187334 0.772818 0.002021 0.007903 0.859631 0.130445 0.049224 0.938214 0.006415 0.006147 0.059336 0.025489 0.015458 0.899716 0.003590 0.002520 0.973377 0.020513 0.149241 0.259944 0.277570 0.313246 0.104423 0.018676 0.870794 0.006107 0.309233 0.031427 0.308482 0.350858 0.238705 0.165332 0.354378 0.241585 0.201522 0.183740 0.336845 0.277892 Consensus sequence: DVBCYTGCTGBGDDD Alignment: DVBCYTGCTGBGDDD -------CTGDGTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Reverse Complement Original Motif Forward 5 8 0.026984 Species: Mus musculus Original motif 0.427843 0.231210 0.119424 0.221523 0.196506 0.239531 0.304906 0.259057 0.302488 0.156922 0.290190 0.250401 0.433872 0.149126 0.196496 0.220506 0.258426 0.076511 0.475100 0.189963 0.841714 0.046453 0.099915 0.011918 0.983853 0.001612 0.001362 0.013174 0.003460 0.982032 0.005728 0.008780 0.989743 0.002253 0.002020 0.005984 0.990761 0.003397 0.002843 0.003000 0.770864 0.003540 0.001549 0.224048 0.235342 0.002598 0.757383 0.004677 0.371426 0.089574 0.529959 0.009040 0.480804 0.196949 0.240413 0.081833 0.187158 0.355102 0.216599 0.241142 0.248006 0.232182 0.157452 0.362360 0.403367 0.177684 0.164649 0.254300 Consensus sequence: HBDDDAACAAAGRVBHH Reverse complement motif 0.254300 0.177684 0.164649 0.403367 0.362360 0.232182 0.157452 0.248006 0.187158 0.216599 0.355102 0.241142 0.081833 0.196949 0.240413 0.480804 0.371426 0.529959 0.089574 0.009040 0.235342 0.757383 0.002598 0.004677 0.224048 0.003540 0.001549 0.770864 0.003000 0.003397 0.002843 0.990761 0.005984 0.002253 0.002020 0.989743 0.003460 0.005728 0.982032 0.008780 0.013174 0.001612 0.001362 0.983853 0.011918 0.046453 0.099915 0.841714 0.258426 0.475100 0.076511 0.189963 0.220506 0.149126 0.196496 0.433872 0.250401 0.156922 0.290190 0.302488 0.196506 0.304906 0.239531 0.259057 0.221523 0.231210 0.119424 0.427843 Consensus sequence: HHBBMCTTTGTTHDDBH Alignment: HBDDDAACAAAGRVBHH ----GAACDCAG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Reverse Complement Original Motif Backward 6 8 0.027590 Species: Mus musculus Original motif 0.351812 0.238467 0.143954 0.265768 0.195246 0.235838 0.281473 0.287443 0.349478 0.172616 0.210739 0.267167 0.484061 0.110438 0.173131 0.232370 0.276692 0.070713 0.479604 0.172991 0.859124 0.044167 0.083951 0.012758 0.975608 0.002029 0.002285 0.020079 0.006422 0.978485 0.007124 0.007969 0.987489 0.003025 0.002868 0.006617 0.987739 0.005463 0.002730 0.004067 0.693013 0.004067 0.002445 0.300475 0.189100 0.003677 0.801408 0.005814 0.352090 0.072517 0.567737 0.007656 0.542316 0.176545 0.192768 0.088371 0.196382 0.304176 0.205985 0.293457 0.289415 0.201358 0.182937 0.326290 0.385801 0.216362 0.152363 0.245475 Consensus sequence: HBDDRAACAAAGRABHH Reverse complement motif 0.245475 0.216362 0.152363 0.385801 0.326290 0.201358 0.182937 0.289415 0.196382 0.205985 0.304176 0.293457 0.088371 0.176545 0.192768 0.542316 0.352090 0.567737 0.072517 0.007656 0.189100 0.801408 0.003677 0.005814 0.300475 0.004067 0.002445 0.693013 0.004067 0.005463 0.002730 0.987739 0.006617 0.003025 0.002868 0.987489 0.006422 0.007124 0.978485 0.007969 0.020079 0.002029 0.002285 0.975608 0.012758 0.044167 0.083951 0.859124 0.276692 0.479604 0.070713 0.172991 0.232370 0.110438 0.173131 0.484061 0.267167 0.172616 0.210739 0.349478 0.287443 0.235838 0.281473 0.195246 0.265768 0.238467 0.143954 0.351812 Consensus sequence: HHBTMCTTTGTTMDDVH Alignment: HBDDRAACAAAGRABHH ----GAACDCAG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00095 Zfp691_primary Reverse Complement Reverse Complement Forward 6 8 0.032757 Species: Mus musculus Original motif 0.099567 0.441928 0.195388 0.263117 0.246130 0.144776 0.333677 0.275418 0.313398 0.260626 0.161738 0.264239 0.441985 0.199975 0.211839 0.146201 0.122299 0.673789 0.078912 0.125000 0.938960 0.009295 0.048527 0.003217 0.003807 0.001797 0.985916 0.008480 0.006543 0.001803 0.001788 0.989866 0.014213 0.000681 0.981108 0.003998 0.005018 0.989568 0.000804 0.004610 0.001371 0.007539 0.002430 0.988659 0.001686 0.992039 0.002898 0.003378 0.516097 0.399155 0.057953 0.026795 0.118858 0.390408 0.146017 0.344717 0.306387 0.166100 0.132122 0.395391 0.388407 0.129054 0.288224 0.194315 0.308085 0.152185 0.160807 0.378924 Consensus sequence: BDHVCAGTGCTCMBHDD Reverse complement motif 0.378924 0.152185 0.160807 0.308085 0.194315 0.129054 0.288224 0.388407 0.395391 0.166100 0.132122 0.306387 0.118858 0.146017 0.390408 0.344717 0.026795 0.399155 0.057953 0.516097 0.001686 0.002898 0.992039 0.003378 0.988659 0.007539 0.002430 0.001371 0.005018 0.000804 0.989568 0.004610 0.014213 0.981108 0.000681 0.003998 0.989866 0.001803 0.001788 0.006543 0.003807 0.985916 0.001797 0.008480 0.003217 0.009295 0.048527 0.938960 0.122299 0.078912 0.673789 0.125000 0.146201 0.199975 0.211839 0.441985 0.264239 0.260626 0.161738 0.313398 0.246130 0.333677 0.144776 0.275418 0.099567 0.195388 0.441928 0.263117 Consensus sequence: DDHBYGAGCACTGBHHB Alignment: DDHBYGAGCACTGBHHB -----GAACDCAG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00053 Rxra_primary Original Motif Reverse Complement Backward 7 8 0.032823 Species: Mus musculus Original motif 0.235299 0.222264 0.237416 0.305021 0.144778 0.278902 0.341673 0.234648 0.261127 0.261904 0.191591 0.285378 0.119943 0.410774 0.218940 0.250343 0.222672 0.075554 0.365253 0.336521 0.001838 0.046904 0.002828 0.948430 0.030410 0.006359 0.960821 0.002410 0.987391 0.007562 0.002810 0.002237 0.105188 0.888650 0.001163 0.004998 0.006475 0.987074 0.001793 0.004659 0.001816 0.765138 0.003092 0.229953 0.010354 0.846496 0.029899 0.113251 0.328732 0.039382 0.265510 0.366377 0.209638 0.262628 0.145613 0.382121 0.385390 0.177695 0.299828 0.137087 0.403452 0.268924 0.096028 0.231595 0.203082 0.231812 0.213520 0.351585 Consensus sequence: DBHBDTGACCCCDHVHB Reverse complement motif 0.351585 0.231812 0.213520 0.203082 0.231595 0.268924 0.096028 0.403452 0.137087 0.177695 0.299828 0.385390 0.382121 0.262628 0.145613 0.209638 0.366377 0.039382 0.265510 0.328732 0.010354 0.029899 0.846496 0.113251 0.001816 0.003092 0.765138 0.229953 0.006475 0.001793 0.987074 0.004659 0.105188 0.001163 0.888650 0.004998 0.002237 0.007562 0.002810 0.987391 0.030410 0.960821 0.006359 0.002410 0.948430 0.046904 0.002828 0.001838 0.222672 0.365253 0.075554 0.336521 0.119943 0.218940 0.410774 0.250343 0.285378 0.261904 0.191591 0.261127 0.144778 0.341673 0.278902 0.234648 0.305021 0.222264 0.237416 0.235299 Consensus sequence: VHBHDGGGGTCAHBHBD Alignment: VHBHDGGGGTCAHBHBD ---CTGDGTTC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_second Reverse Complement Original Motif Forward 5 8 0.034694 Species: Mus musculus Original motif 0.360404 0.193218 0.248888 0.197490 0.286498 0.224597 0.426555 0.062349 0.347032 0.440548 0.033161 0.179259 0.337062 0.193658 0.385751 0.083529 0.108793 0.005723 0.878300 0.007184 0.015151 0.973406 0.009324 0.002118 0.972117 0.003915 0.019783 0.004185 0.010144 0.980912 0.003106 0.005839 0.974864 0.007532 0.015914 0.001691 0.012441 0.939195 0.029256 0.019108 0.759620 0.106164 0.073819 0.060397 0.157234 0.818234 0.007449 0.017083 0.050076 0.063608 0.505171 0.381144 0.131903 0.538163 0.124608 0.205325 0.367623 0.286526 0.240931 0.104919 0.357798 0.317606 0.097711 0.226885 Consensus sequence: DVMVGCACACACKCVH Reverse complement motif 0.226885 0.317606 0.097711 0.357798 0.104919 0.286526 0.240931 0.367623 0.131903 0.124608 0.538163 0.205325 0.050076 0.505171 0.063608 0.381144 0.157234 0.007449 0.818234 0.017083 0.060397 0.106164 0.073819 0.759620 0.012441 0.029256 0.939195 0.019108 0.001691 0.007532 0.015914 0.974864 0.010144 0.003106 0.980912 0.005839 0.004185 0.003915 0.019783 0.972117 0.015151 0.009324 0.973406 0.002118 0.108793 0.878300 0.005723 0.007184 0.337062 0.385751 0.193658 0.083529 0.347032 0.033161 0.440548 0.179259 0.286498 0.426555 0.224597 0.062349 0.197490 0.193218 0.248888 0.360404 Consensus sequence: HBGYGTGTGTGCVRVD Alignment: DVMVGCACACACKCVH ----GAACDCAG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_secondary Original Motif Original Motif Forward 4 8 0.034779 Species: Mus musculus Original motif 0.252126 0.268706 0.351590 0.127578 0.158171 0.083434 0.389646 0.368749 0.180010 0.290882 0.279192 0.249916 0.206905 0.249360 0.275438 0.268296 0.756588 0.046202 0.023921 0.173289 0.018262 0.022596 0.949143 0.010000 0.206468 0.046491 0.745475 0.001566 0.005511 0.001141 0.983152 0.010196 0.004791 0.001893 0.985951 0.007365 0.027643 0.001133 0.008565 0.962659 0.002459 0.970934 0.007826 0.018780 0.924387 0.003164 0.071225 0.001224 0.419387 0.230189 0.111588 0.238836 0.290954 0.163823 0.341233 0.203991 0.196768 0.281307 0.313868 0.208056 0.128428 0.260428 0.378607 0.232537 0.269305 0.378895 0.123480 0.228320 Consensus sequence: VKBBAGGGGTCAHDBBH Reverse complement motif 0.269305 0.123480 0.378895 0.228320 0.128428 0.378607 0.260428 0.232537 0.196768 0.313868 0.281307 0.208056 0.290954 0.341233 0.163823 0.203991 0.238836 0.230189 0.111588 0.419387 0.001224 0.003164 0.071225 0.924387 0.002459 0.007826 0.970934 0.018780 0.962659 0.001133 0.008565 0.027643 0.004791 0.985951 0.001893 0.007365 0.005511 0.983152 0.001141 0.010196 0.206468 0.745475 0.046491 0.001566 0.018262 0.949143 0.022596 0.010000 0.173289 0.046202 0.023921 0.756588 0.206905 0.275438 0.249360 0.268296 0.180010 0.279192 0.290882 0.249916 0.158171 0.389646 0.083434 0.368749 0.252126 0.351590 0.268706 0.127578 Consensus sequence: DBBHHTGACCCCTBBYV Alignment: VKBBAGGGGTCAHDBBH ---CTGDGTTC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 17 Motif name: Motif 17 Original motif 0.577889 0.000000 0.422111 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.419095 0.000000 0.580905 0.000000 Consensus sequence: RGGAAR Reserve complement motif 0.419095 0.580905 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.422111 0.577889 Consensus sequence: MTTCCK ************************************************************************ Best Matches for Motif ID 17 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00090 Elf3_primary Reverse Complement Reverse Complement Backward 5 6 0.000000 Species: Mus musculus Original motif 0.338918 0.138284 0.180304 0.342493 0.614328 0.046536 0.066645 0.272492 0.248636 0.405469 0.125813 0.220081 0.389942 0.368832 0.198252 0.042975 0.473107 0.443315 0.064884 0.018693 0.032285 0.005365 0.952727 0.009624 0.021365 0.006895 0.955827 0.015913 0.976258 0.006536 0.010998 0.006209 0.892027 0.007456 0.003678 0.096839 0.433755 0.037682 0.520487 0.008076 0.098931 0.159997 0.023691 0.717381 0.423164 0.077419 0.201004 0.298413 0.572262 0.158763 0.164963 0.104012 Consensus sequence: DAHMMGGAARTDA Reverse complement motif 0.104012 0.158763 0.164963 0.572262 0.298413 0.077419 0.201004 0.423164 0.717381 0.159997 0.023691 0.098931 0.433755 0.520487 0.037682 0.008076 0.096839 0.007456 0.003678 0.892027 0.006209 0.006536 0.010998 0.976258 0.021365 0.955827 0.006895 0.015913 0.032285 0.952727 0.005365 0.009624 0.018693 0.443315 0.064884 0.473107 0.042975 0.368832 0.198252 0.389942 0.248636 0.125813 0.405469 0.220081 0.272492 0.046536 0.066645 0.614328 0.342493 0.138284 0.180304 0.338918 Consensus sequence: TDAMTTCCYYDTD Alignment: TDAMTTCCYYDTD ---MTTCCK---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00085 Sfpi1_primary Original Motif Original Motif Forward 6 6 0.003517 Species: Mus musculus Original motif 0.211586 0.273653 0.234763 0.279998 0.298032 0.104818 0.290385 0.306764 0.593467 0.048056 0.154602 0.203875 0.459746 0.052697 0.169949 0.317608 0.188623 0.155357 0.591543 0.064477 0.402746 0.286227 0.290285 0.020742 0.048569 0.001240 0.946397 0.003793 0.004354 0.001387 0.990819 0.003441 0.974272 0.001416 0.001466 0.022847 0.938748 0.003090 0.000833 0.057329 0.045831 0.270321 0.674644 0.009204 0.055664 0.092552 0.026061 0.825722 0.301235 0.122653 0.267039 0.309073 0.278680 0.276099 0.219159 0.226061 Consensus sequence: BDAWGVGGAAGTDH Reverse complement motif 0.226061 0.276099 0.219159 0.278680 0.309073 0.122653 0.267039 0.301235 0.825722 0.092552 0.026061 0.055664 0.045831 0.674644 0.270321 0.009204 0.057329 0.003090 0.000833 0.938748 0.022847 0.001416 0.001466 0.974272 0.004354 0.990819 0.001387 0.003441 0.048569 0.946397 0.001240 0.003793 0.020742 0.286227 0.290285 0.402746 0.188623 0.591543 0.155357 0.064477 0.317608 0.052697 0.169949 0.459746 0.203875 0.048056 0.154602 0.593467 0.306764 0.104818 0.290385 0.298032 0.279998 0.273653 0.234763 0.211586 Consensus sequence: HDACTTCCBCWTDV Alignment: BDAWGVGGAAGTDH -----RGGAAR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00414 Ets1 Reverse Complement Reverse Complement Forward 5 6 0.003562 Species: Mus musculus Original motif 0.185517 0.352264 0.234781 0.227438 0.267475 0.153636 0.374632 0.204257 0.209599 0.165342 0.278644 0.346414 0.223668 0.129204 0.369628 0.277501 0.215373 0.320617 0.160255 0.303754 0.836593 0.030586 0.105229 0.027592 0.018622 0.916166 0.063271 0.001942 0.137490 0.857089 0.004870 0.000551 0.002748 0.001698 0.993222 0.002332 0.003309 0.001651 0.993223 0.001817 0.990419 0.000878 0.002565 0.006138 0.815068 0.016317 0.001274 0.167342 0.373416 0.011725 0.613373 0.001487 0.124276 0.194676 0.025016 0.656033 0.359192 0.227478 0.212937 0.200393 0.314691 0.211253 0.233074 0.240981 0.285894 0.131047 0.225562 0.357496 Consensus sequence: BDDDHACCGGAARTVDD Reverse complement motif 0.357496 0.131047 0.225562 0.285894 0.240981 0.211253 0.233074 0.314691 0.200393 0.227478 0.212937 0.359192 0.656033 0.194676 0.025016 0.124276 0.373416 0.613373 0.011725 0.001487 0.167342 0.016317 0.001274 0.815068 0.006138 0.000878 0.002565 0.990419 0.003309 0.993223 0.001651 0.001817 0.002748 0.993222 0.001698 0.002332 0.137490 0.004870 0.857089 0.000551 0.018622 0.063271 0.916166 0.001942 0.027592 0.030586 0.105229 0.836593 0.215373 0.160255 0.320617 0.303754 0.223668 0.369628 0.129204 0.277501 0.346414 0.165342 0.278644 0.209599 0.267475 0.374632 0.153636 0.204257 0.185517 0.234781 0.352264 0.227438 Consensus sequence: DDBAMTTCCGGTDHDHB Alignment: DDBAMTTCCGGTDHDHB ----MTTCCK------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00409 Elf5 Original Motif Original Motif Backward 4 6 0.004400 Species: Mus musculus Original motif 0.179167 0.229135 0.279326 0.312372 0.421239 0.102900 0.145609 0.330252 0.791978 0.009721 0.028951 0.169350 0.237609 0.375543 0.161526 0.225321 0.145845 0.325411 0.516045 0.012699 0.431007 0.516333 0.051679 0.000982 0.005750 0.001408 0.990928 0.001915 0.002025 0.001886 0.992021 0.004068 0.986405 0.001705 0.001039 0.010851 0.950652 0.003619 0.000482 0.045248 0.165221 0.013897 0.819076 0.001805 0.032042 0.049374 0.014632 0.903953 0.285325 0.108010 0.127373 0.479292 0.366131 0.141246 0.290661 0.201963 Consensus sequence: BWAHSMGGAAGTWD Reverse complement motif 0.201963 0.141246 0.290661 0.366131 0.479292 0.108010 0.127373 0.285325 0.903953 0.049374 0.014632 0.032042 0.165221 0.819076 0.013897 0.001805 0.045248 0.003619 0.000482 0.950652 0.010851 0.001705 0.001039 0.986405 0.002025 0.992021 0.001886 0.004068 0.005750 0.990928 0.001408 0.001915 0.431007 0.051679 0.516333 0.000982 0.145845 0.516045 0.325411 0.012699 0.237609 0.161526 0.375543 0.225321 0.169350 0.009721 0.028951 0.791978 0.330252 0.102900 0.145609 0.421239 0.312372 0.229135 0.279326 0.179167 Consensus sequence: DWACTTCCRSDTWV Alignment: BWAHSMGGAAGTWD -----RGGAAR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00015 Ehf_primary Reverse Complement Reverse Complement Forward 4 6 0.006556 Species: Mus musculus Original motif 0.327238 0.304037 0.232174 0.136551 0.198306 0.222758 0.316421 0.262515 0.252373 0.217079 0.267210 0.263337 0.633781 0.039800 0.036914 0.289504 0.160405 0.384709 0.220671 0.234215 0.134205 0.590541 0.266074 0.009179 0.210933 0.755978 0.030378 0.002710 0.011856 0.001472 0.984138 0.002533 0.003235 0.001605 0.989465 0.005695 0.984189 0.002418 0.002842 0.010551 0.884492 0.002651 0.002095 0.110762 0.249047 0.054607 0.690939 0.005407 0.124602 0.154669 0.047597 0.673132 0.375217 0.110561 0.230374 0.283848 0.402951 0.186789 0.219551 0.190710 Consensus sequence: VBDABCCGGAAGTDD Reverse complement motif 0.190710 0.186789 0.219551 0.402951 0.283848 0.110561 0.230374 0.375217 0.673132 0.154669 0.047597 0.124602 0.249047 0.690939 0.054607 0.005407 0.110762 0.002651 0.002095 0.884492 0.010551 0.002418 0.002842 0.984189 0.003235 0.989465 0.001605 0.005695 0.011856 0.984138 0.001472 0.002533 0.210933 0.030378 0.755978 0.002710 0.134205 0.266074 0.590541 0.009179 0.160405 0.220671 0.384709 0.234215 0.289504 0.039800 0.036914 0.633781 0.252373 0.267210 0.217079 0.263337 0.198306 0.316421 0.222758 0.262515 0.136551 0.304037 0.232174 0.327238 Consensus sequence: DDACTTCCGGBTHBB Alignment: DDACTTCCGGBTHBB ---MTTCCK------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00013 Gabpa_primary Reverse Complement Reverse Complement Forward 6 6 0.006637 Species: Mus musculus Original motif 0.347579 0.362501 0.122567 0.167353 0.291516 0.289483 0.243331 0.175670 0.444682 0.202283 0.117720 0.235315 0.286823 0.160493 0.154998 0.397686 0.777207 0.031168 0.138668 0.052958 0.020187 0.935458 0.041166 0.003190 0.044954 0.947416 0.006517 0.001112 0.004962 0.002315 0.991007 0.001716 0.002572 0.002766 0.992355 0.002307 0.989037 0.001723 0.001769 0.007471 0.898665 0.004213 0.001115 0.096007 0.219936 0.020606 0.754552 0.004906 0.021686 0.134459 0.014432 0.829423 0.197325 0.176901 0.362465 0.263309 0.245978 0.264865 0.197336 0.291821 0.323340 0.203013 0.195793 0.277854 0.279355 0.250354 0.250472 0.219819 Consensus sequence: HVHHACCGGAAGTDHHV Reverse complement motif 0.219819 0.250354 0.250472 0.279355 0.277854 0.203013 0.195793 0.323340 0.291821 0.264865 0.197336 0.245978 0.197325 0.362465 0.176901 0.263309 0.829423 0.134459 0.014432 0.021686 0.219936 0.754552 0.020606 0.004906 0.096007 0.004213 0.001115 0.898665 0.007471 0.001723 0.001769 0.989037 0.002572 0.992355 0.002766 0.002307 0.004962 0.991007 0.002315 0.001716 0.044954 0.006517 0.947416 0.001112 0.020187 0.041166 0.935458 0.003190 0.052958 0.031168 0.138668 0.777207 0.397686 0.160493 0.154998 0.286823 0.235315 0.202283 0.117720 0.444682 0.175670 0.289483 0.243331 0.291516 0.347579 0.122567 0.362501 0.167353 Consensus sequence: BHHHACTTCCGGTHHBD Alignment: BHHHACTTCCGGTHHBD -----MTTCCK------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00413 Elf4 Reverse Complement Original Motif Forward 6 6 0.008964 Species: Mus musculus Original motif 0.349744 0.139466 0.209326 0.301464 0.080478 0.359482 0.307083 0.252956 0.145756 0.213763 0.350557 0.289924 0.317307 0.199359 0.096089 0.387245 0.868576 0.009724 0.088821 0.032878 0.001975 0.827004 0.014159 0.156862 0.045494 0.000985 0.001907 0.951615 0.011012 0.001203 0.002186 0.985599 0.002743 0.992908 0.002226 0.002123 0.001498 0.990840 0.001556 0.006106 0.000951 0.005138 0.880591 0.113319 0.003127 0.107962 0.867980 0.020930 0.156602 0.055355 0.396563 0.391480 0.421246 0.049379 0.084495 0.444880 0.223879 0.068063 0.203809 0.504249 0.144100 0.323579 0.131544 0.400777 Consensus sequence: DBBHACTTCCGGKWTH Reverse complement motif 0.400777 0.323579 0.131544 0.144100 0.504249 0.068063 0.203809 0.223879 0.444880 0.049379 0.084495 0.421246 0.156602 0.396563 0.055355 0.391480 0.003127 0.867980 0.107962 0.020930 0.000951 0.880591 0.005138 0.113319 0.001498 0.001556 0.990840 0.006106 0.002743 0.002226 0.992908 0.002123 0.985599 0.001203 0.002186 0.011012 0.951615 0.000985 0.001907 0.045494 0.001975 0.014159 0.827004 0.156862 0.032878 0.009724 0.088821 0.868576 0.387245 0.199359 0.096089 0.317307 0.145756 0.350557 0.213763 0.289924 0.080478 0.307083 0.359482 0.252956 0.301464 0.139466 0.209326 0.349744 Consensus sequence: HAWYCCGGAAGTHBBD Alignment: DBBHACTTCCGGKWTH -----MTTCCK----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00419 Spic Original Motif Original Motif Forward 6 6 0.009755 Species: Mus musculus Original motif 0.372554 0.181557 0.296001 0.149888 0.734552 0.057250 0.044752 0.163446 0.707604 0.045049 0.110341 0.137006 0.637848 0.057252 0.071934 0.232966 0.125449 0.108933 0.689441 0.076176 0.266215 0.517339 0.207018 0.009428 0.015016 0.002582 0.979670 0.002732 0.004303 0.002322 0.989973 0.003401 0.982327 0.003552 0.003393 0.010727 0.974155 0.001662 0.003294 0.020889 0.040023 0.128522 0.821560 0.009894 0.027635 0.045828 0.016297 0.910239 0.317500 0.045635 0.172234 0.464631 0.342838 0.107812 0.284775 0.264576 Consensus sequence: VAAAGMGGAAGTWD Reverse complement motif 0.264576 0.107812 0.284775 0.342838 0.464631 0.045635 0.172234 0.317500 0.910239 0.045828 0.016297 0.027635 0.040023 0.821560 0.128522 0.009894 0.020889 0.001662 0.003294 0.974155 0.010727 0.003552 0.003393 0.982327 0.004303 0.989973 0.002322 0.003401 0.015016 0.979670 0.002582 0.002732 0.266215 0.207018 0.517339 0.009428 0.125449 0.689441 0.108933 0.076176 0.232966 0.057252 0.071934 0.637848 0.137006 0.045049 0.110341 0.707604 0.163446 0.057250 0.044752 0.734552 0.149888 0.181557 0.296001 0.372554 Consensus sequence: DWACTTCCRCTTTB Alignment: VAAAGMGGAAGTWD -----RGGAAR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00418 Etv6 Reverse Complement Original Motif Forward 7 6 0.010345 Species: Mus musculus Original motif 0.354972 0.069107 0.299350 0.276571 0.209701 0.408003 0.227382 0.154914 0.284336 0.375266 0.162604 0.177794 0.176569 0.181438 0.342172 0.299820 0.106551 0.204378 0.060299 0.628772 0.884088 0.003252 0.103113 0.009546 0.001110 0.704391 0.006294 0.288205 0.014992 0.000892 0.001401 0.982714 0.004842 0.001887 0.002470 0.990801 0.002724 0.992864 0.002206 0.002206 0.001792 0.991200 0.001615 0.005393 0.005151 0.010157 0.940259 0.044433 0.017780 0.199839 0.761921 0.020459 0.230834 0.269936 0.119652 0.379577 0.233019 0.093692 0.034743 0.638546 0.194739 0.181763 0.175340 0.448159 0.145452 0.293709 0.335917 0.224922 Consensus sequence: DVHBTACTTCCGGHTHB Reverse complement motif 0.145452 0.335917 0.293709 0.224922 0.448159 0.181763 0.175340 0.194739 0.638546 0.093692 0.034743 0.233019 0.379577 0.269936 0.119652 0.230834 0.017780 0.761921 0.199839 0.020459 0.005151 0.940259 0.010157 0.044433 0.001792 0.001615 0.991200 0.005393 0.002724 0.002206 0.992864 0.002206 0.990801 0.001887 0.002470 0.004842 0.982714 0.000892 0.001401 0.014992 0.001110 0.006294 0.704391 0.288205 0.009546 0.003252 0.103113 0.884088 0.628772 0.204378 0.060299 0.106551 0.176569 0.342172 0.181438 0.299820 0.284336 0.162604 0.375266 0.177794 0.209701 0.227382 0.408003 0.154914 0.276571 0.069107 0.299350 0.354972 Consensus sequence: BHAHCCGGAAGTABDVD Alignment: DVHBTACTTCCGGHTHB ------MTTCCK----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00404 Elf2 Reverse Complement Original Motif Forward 6 6 0.010491 Species: Mus musculus Original motif 0.381592 0.198656 0.201326 0.218426 0.091509 0.331644 0.302830 0.274017 0.165404 0.272650 0.352528 0.209418 0.322145 0.255685 0.129399 0.292771 0.853490 0.012857 0.078563 0.055090 0.002655 0.792907 0.026436 0.178002 0.058923 0.001063 0.002976 0.937038 0.014944 0.001369 0.002865 0.980822 0.003786 0.992305 0.002102 0.001807 0.001365 0.988969 0.001554 0.008111 0.001527 0.009592 0.891056 0.097824 0.003671 0.143708 0.836117 0.016503 0.242982 0.061527 0.305342 0.390148 0.426709 0.117673 0.096260 0.359357 0.202520 0.113885 0.262005 0.421589 0.137957 0.359367 0.163919 0.338758 Consensus sequence: DBBHACTTCCGGDWDB Reverse complement motif 0.137957 0.163919 0.359367 0.338758 0.421589 0.113885 0.262005 0.202520 0.359357 0.117673 0.096260 0.426709 0.390148 0.061527 0.305342 0.242982 0.003671 0.836117 0.143708 0.016503 0.001527 0.891056 0.009592 0.097824 0.001365 0.001554 0.988969 0.008111 0.003786 0.002102 0.992305 0.001807 0.980822 0.001369 0.002865 0.014944 0.937038 0.001063 0.002976 0.058923 0.002655 0.026436 0.792907 0.178002 0.055090 0.012857 0.078563 0.853490 0.292771 0.255685 0.129399 0.322145 0.165404 0.352528 0.272650 0.209418 0.091509 0.302830 0.331644 0.274017 0.218426 0.198656 0.201326 0.381592 Consensus sequence: BDWDCCGGAAGTHBBD Alignment: DBBHACTTCCGGDWDB -----MTTCCK----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 18 Motif name: Motif 18 Original motif 1.000000 0.000000 0.000000 0.000000 0.483355 0.516645 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.832898 0.000000 0.167102 0.000000 Consensus sequence: AMACA Reserve complement motif 0.000000 0.000000 0.167102 0.832898 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.483355 0.000000 0.516645 0.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: TGTRT ************************************************************************ Best Matches for Motif ID 18 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_second Original Motif Original Motif Forward 7 5 0.000000 Species: Mus musculus Original motif 0.360404 0.193218 0.248888 0.197490 0.286498 0.224597 0.426555 0.062349 0.347032 0.440548 0.033161 0.179259 0.337062 0.193658 0.385751 0.083529 0.108793 0.005723 0.878300 0.007184 0.015151 0.973406 0.009324 0.002118 0.972117 0.003915 0.019783 0.004185 0.010144 0.980912 0.003106 0.005839 0.974864 0.007532 0.015914 0.001691 0.012441 0.939195 0.029256 0.019108 0.759620 0.106164 0.073819 0.060397 0.157234 0.818234 0.007449 0.017083 0.050076 0.063608 0.505171 0.381144 0.131903 0.538163 0.124608 0.205325 0.367623 0.286526 0.240931 0.104919 0.357798 0.317606 0.097711 0.226885 Consensus sequence: DVMVGCACACACKCVH Reverse complement motif 0.226885 0.317606 0.097711 0.357798 0.104919 0.286526 0.240931 0.367623 0.131903 0.124608 0.538163 0.205325 0.050076 0.505171 0.063608 0.381144 0.157234 0.007449 0.818234 0.017083 0.060397 0.106164 0.073819 0.759620 0.012441 0.029256 0.939195 0.019108 0.001691 0.007532 0.015914 0.974864 0.010144 0.003106 0.980912 0.005839 0.004185 0.003915 0.019783 0.972117 0.015151 0.009324 0.973406 0.002118 0.108793 0.878300 0.005723 0.007184 0.337062 0.385751 0.193658 0.083529 0.347032 0.033161 0.440548 0.179259 0.286498 0.426555 0.224597 0.062349 0.197490 0.193218 0.248888 0.360404 Consensus sequence: HBGYGTGTGTGCVRVD Alignment: DVMVGCACACACKCVH ------AMACA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_primary Original Motif Original Motif Forward 8 5 0.006054 Species: Mus musculus Original motif 0.338172 0.192194 0.207817 0.261817 0.407924 0.117261 0.278236 0.196580 0.595570 0.070480 0.119221 0.214729 0.710845 0.038748 0.052600 0.197807 0.124647 0.116138 0.178053 0.581162 0.201602 0.005514 0.792110 0.000774 0.024590 0.004193 0.001331 0.969886 0.919465 0.077871 0.000760 0.001904 0.972342 0.010395 0.000580 0.016683 0.991045 0.001495 0.003585 0.003875 0.001358 0.885197 0.000980 0.112465 0.990318 0.001846 0.002968 0.004867 0.804563 0.063147 0.023496 0.108795 0.564824 0.087976 0.102865 0.244336 0.269947 0.300278 0.285008 0.144767 0.337905 0.220102 0.253694 0.188299 0.153781 0.274135 0.318343 0.253741 Consensus sequence: DDAATGTAAACAAAVVB Reverse complement motif 0.153781 0.318343 0.274135 0.253741 0.188299 0.220102 0.253694 0.337905 0.269947 0.285008 0.300278 0.144767 0.244336 0.087976 0.102865 0.564824 0.108795 0.063147 0.023496 0.804563 0.004867 0.001846 0.002968 0.990318 0.001358 0.000980 0.885197 0.112465 0.003875 0.001495 0.003585 0.991045 0.016683 0.010395 0.000580 0.972342 0.001904 0.077871 0.000760 0.919465 0.969886 0.004193 0.001331 0.024590 0.201602 0.792110 0.005514 0.000774 0.581162 0.116138 0.178053 0.124647 0.197807 0.038748 0.052600 0.710845 0.214729 0.070480 0.119221 0.595570 0.196580 0.117261 0.278236 0.407924 0.261817 0.192194 0.207817 0.338172 Consensus sequence: BBVTTTGTTTACATTDD Alignment: DDAATGTAAACAAAVVB -------AMACA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00041 Foxj1_primary Original Motif Original Motif Forward 6 5 0.007533 Species: Mus musculus Original motif 0.446042 0.209997 0.124191 0.219770 0.271534 0.218131 0.245258 0.265077 0.368646 0.184693 0.168482 0.278180 0.348384 0.034204 0.583335 0.034077 0.040365 0.085618 0.013162 0.860855 0.824790 0.156631 0.004063 0.014515 0.835134 0.069381 0.003505 0.091980 0.967572 0.009280 0.006259 0.016890 0.009507 0.909577 0.004492 0.076424 0.947956 0.006994 0.008177 0.036873 0.599204 0.170666 0.065622 0.164508 0.708795 0.035865 0.070557 0.184782 0.303191 0.287145 0.184748 0.224917 0.285550 0.184167 0.248662 0.281621 0.235315 0.210836 0.254428 0.299421 0.220038 0.158539 0.286552 0.334871 Consensus sequence: HDHRTAAACAAAHDDD Reverse complement motif 0.334871 0.158539 0.286552 0.220038 0.299421 0.210836 0.254428 0.235315 0.281621 0.184167 0.248662 0.285550 0.224917 0.287145 0.184748 0.303191 0.184782 0.035865 0.070557 0.708795 0.164508 0.170666 0.065622 0.599204 0.036873 0.006994 0.008177 0.947956 0.009507 0.004492 0.909577 0.076424 0.016890 0.009280 0.006259 0.967572 0.091980 0.069381 0.003505 0.835134 0.014515 0.156631 0.004063 0.824790 0.860855 0.085618 0.013162 0.040365 0.348384 0.583335 0.034204 0.034077 0.278180 0.184693 0.168482 0.368646 0.265077 0.218131 0.245258 0.271534 0.219770 0.209997 0.124191 0.446042 Consensus sequence: DDDHTTTGTTTAMHDH Alignment: HDHRTAAACAAAHDDD -----AMACA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_primary Original Motif Original Motif Forward 8 5 0.009656 Species: Mus musculus Original motif 0.273456 0.257473 0.208488 0.260583 0.338566 0.133379 0.306363 0.221693 0.475488 0.192852 0.156858 0.174803 0.506619 0.132646 0.170373 0.190362 0.349042 0.127275 0.325924 0.197759 0.303850 0.013619 0.678034 0.004497 0.014136 0.015691 0.003073 0.967100 0.913373 0.082928 0.001910 0.001789 0.956294 0.017745 0.000584 0.025378 0.987796 0.001685 0.004159 0.006360 0.002288 0.814764 0.001427 0.181521 0.986707 0.002688 0.003346 0.007259 0.787378 0.065481 0.057961 0.089180 0.572982 0.089910 0.066184 0.270924 0.224167 0.339979 0.258886 0.176968 0.268414 0.272007 0.239541 0.220038 0.241771 0.394748 0.174273 0.189208 Consensus sequence: HDHADGTAAACAAAVVH Reverse complement motif 0.241771 0.174273 0.394748 0.189208 0.268414 0.239541 0.272007 0.220038 0.224167 0.258886 0.339979 0.176968 0.270924 0.089910 0.066184 0.572982 0.089180 0.065481 0.057961 0.787378 0.007259 0.002688 0.003346 0.986707 0.002288 0.001427 0.814764 0.181521 0.006360 0.001685 0.004159 0.987796 0.025378 0.017745 0.000584 0.956294 0.001789 0.082928 0.001910 0.913373 0.967100 0.015691 0.003073 0.014136 0.303850 0.678034 0.013619 0.004497 0.197759 0.127275 0.325924 0.349042 0.190362 0.132646 0.170373 0.506619 0.174803 0.192852 0.156858 0.475488 0.221693 0.133379 0.306363 0.338566 0.260583 0.257473 0.208488 0.273456 Consensus sequence: DVVTTTGTTTACDTHDH Alignment: HDHADGTAAACAAAVVH -------AMACA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_primary Original Motif Original Motif Backward 6 5 0.009895 Species: Mus musculus Original motif 0.323208 0.152915 0.185111 0.338766 0.428132 0.056109 0.099487 0.416272 0.659386 0.039965 0.035805 0.264843 0.647143 0.049206 0.078984 0.224667 0.208834 0.076592 0.071631 0.642943 0.341077 0.003865 0.649511 0.005547 0.016627 0.001866 0.001715 0.979792 0.952319 0.045294 0.000870 0.001516 0.988834 0.004620 0.000720 0.005826 0.989346 0.001005 0.006467 0.003182 0.001093 0.784230 0.001235 0.213442 0.991209 0.002017 0.001737 0.005037 0.801581 0.037084 0.023060 0.138274 0.528554 0.089350 0.107501 0.274595 0.208802 0.268646 0.368022 0.154530 0.280218 0.221367 0.340497 0.157918 0.146611 0.250725 0.293524 0.309140 Consensus sequence: DWAATRTAAACAAWVVB Reverse complement motif 0.309140 0.250725 0.293524 0.146611 0.280218 0.340497 0.221367 0.157918 0.208802 0.368022 0.268646 0.154530 0.274595 0.089350 0.107501 0.528554 0.138274 0.037084 0.023060 0.801581 0.005037 0.002017 0.001737 0.991209 0.001093 0.001235 0.784230 0.213442 0.003182 0.001005 0.006467 0.989346 0.005826 0.004620 0.000720 0.988834 0.001516 0.045294 0.000870 0.952319 0.979792 0.001866 0.001715 0.016627 0.341077 0.649511 0.003865 0.005547 0.642943 0.076592 0.071631 0.208834 0.224667 0.049206 0.078984 0.647143 0.264843 0.039965 0.035805 0.659386 0.416272 0.056109 0.099487 0.428132 0.338766 0.152915 0.185111 0.323208 Consensus sequence: VVVWTTGTTTAMATTWD Alignment: DWAATRTAAACAAWVVB -------AMACA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00004 Sox14_secondary Reverse Complement Reverse Complement Backward 4 5 0.011645 Species: Mus musculus Original motif 0.191264 0.345487 0.212142 0.251106 0.105033 0.130838 0.338939 0.425191 0.126539 0.333031 0.233364 0.307066 0.641901 0.114039 0.195933 0.048127 0.153349 0.532437 0.272427 0.041786 0.934680 0.009395 0.019668 0.036257 0.013611 0.927298 0.037729 0.021361 0.964293 0.018416 0.006724 0.010568 0.962181 0.018004 0.014592 0.005223 0.229593 0.016301 0.007632 0.746474 0.268456 0.030092 0.519349 0.182102 0.201484 0.107350 0.588833 0.102334 0.253726 0.259057 0.242924 0.244293 0.168663 0.203061 0.347898 0.280378 0.175853 0.339716 0.301724 0.182707 Consensus sequence: BKBASACAATRGHBB Reverse complement motif 0.175853 0.301724 0.339716 0.182707 0.168663 0.347898 0.203061 0.280378 0.253726 0.242924 0.259057 0.244293 0.201484 0.588833 0.107350 0.102334 0.268456 0.519349 0.030092 0.182102 0.746474 0.016301 0.007632 0.229593 0.005223 0.018004 0.014592 0.962181 0.010568 0.018416 0.006724 0.964293 0.013611 0.037729 0.927298 0.021361 0.036257 0.009395 0.019668 0.934680 0.153349 0.272427 0.532437 0.041786 0.048127 0.114039 0.195933 0.641901 0.126539 0.233364 0.333031 0.307066 0.425191 0.130838 0.338939 0.105033 0.191264 0.212142 0.345487 0.251106 Consensus sequence: BBDCMATTGTSTBRB Alignment: BBDCMATTGTSTBRB -------TGTRT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_primary Original Motif Original Motif Backward 6 5 0.014312 Species: Mus musculus Original motif 0.335487 0.205062 0.128957 0.330494 0.411635 0.179625 0.175701 0.233038 0.412976 0.128602 0.091890 0.366532 0.608396 0.079002 0.107142 0.205460 0.433474 0.035203 0.153143 0.378180 0.087552 0.005003 0.894586 0.012858 0.004459 0.038951 0.001109 0.955481 0.924470 0.068560 0.001165 0.005805 0.920483 0.070039 0.001674 0.007805 0.988335 0.001902 0.003155 0.006608 0.001527 0.656726 0.002699 0.339047 0.987505 0.001810 0.004336 0.006349 0.719584 0.065184 0.050384 0.164848 0.535389 0.099997 0.102849 0.261764 0.245215 0.272017 0.301499 0.181269 0.306107 0.209040 0.248687 0.236166 0.223744 0.278668 0.251931 0.245657 Consensus sequence: HHWAWGTAAAYAAAVDB Reverse complement motif 0.223744 0.251931 0.278668 0.245657 0.236166 0.209040 0.248687 0.306107 0.245215 0.301499 0.272017 0.181269 0.261764 0.099997 0.102849 0.535389 0.164848 0.065184 0.050384 0.719584 0.006349 0.001810 0.004336 0.987505 0.001527 0.002699 0.656726 0.339047 0.006608 0.001902 0.003155 0.988335 0.007805 0.070039 0.001674 0.920483 0.005805 0.068560 0.001165 0.924470 0.955481 0.038951 0.001109 0.004459 0.087552 0.894586 0.005003 0.012858 0.378180 0.035203 0.153143 0.433474 0.205460 0.079002 0.107142 0.608396 0.366532 0.128602 0.091890 0.412976 0.233038 0.179625 0.175701 0.411635 0.330494 0.205062 0.128957 0.335487 Consensus sequence: BDVTTTKTTTACWTWHH Alignment: HHWAWGTAAAYAAAVDB -------AMACA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00026 Zscan4_secondary Reverse Complement Reverse Complement Forward 6 5 0.015323 Species: Mus musculus Original motif 0.275231 0.387763 0.112851 0.224155 0.269193 0.327669 0.360934 0.042204 0.439403 0.233641 0.022359 0.304596 0.409796 0.139856 0.390450 0.059899 0.038409 0.011231 0.936209 0.014150 0.067382 0.909014 0.021244 0.002359 0.962897 0.009563 0.009687 0.017854 0.043757 0.937596 0.007648 0.010999 0.970698 0.005379 0.016825 0.007098 0.066033 0.636556 0.043955 0.253456 0.797406 0.066726 0.011988 0.123879 0.774632 0.121694 0.017773 0.085901 0.324017 0.235408 0.213365 0.227210 0.365796 0.192247 0.134547 0.307410 0.299601 0.246867 0.098395 0.355137 0.328229 0.242048 0.251143 0.178579 Consensus sequence: HVHRGCACACAAHHHV Reverse complement motif 0.178579 0.242048 0.251143 0.328229 0.355137 0.246867 0.098395 0.299601 0.307410 0.192247 0.134547 0.365796 0.227210 0.235408 0.213365 0.324017 0.085901 0.121694 0.017773 0.774632 0.123879 0.066726 0.011988 0.797406 0.066033 0.043955 0.636556 0.253456 0.007098 0.005379 0.016825 0.970698 0.043757 0.007648 0.937596 0.010999 0.017854 0.009563 0.009687 0.962897 0.067382 0.021244 0.909014 0.002359 0.038409 0.936209 0.011231 0.014150 0.059899 0.139856 0.390450 0.409796 0.304596 0.233641 0.022359 0.439403 0.269193 0.360934 0.327669 0.042204 0.275231 0.112851 0.387763 0.224155 Consensus sequence: BHHHTTGTGTGCKHVD Alignment: BHHHTTGTGTGCKHVD -----TGTRT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00011 Irf6_primary Reverse Complement Reverse Complement Forward 6 5 0.024195 Species: Mus musculus Original motif 0.256714 0.363080 0.149403 0.230804 0.312941 0.135162 0.190389 0.361507 0.255033 0.128823 0.354898 0.261246 0.667588 0.053933 0.205778 0.072701 0.199950 0.339707 0.114445 0.345899 0.029853 0.908514 0.006383 0.055250 0.019621 0.002231 0.976266 0.001882 0.983875 0.005320 0.008639 0.002166 0.698671 0.002741 0.006725 0.291864 0.990097 0.003609 0.003047 0.003247 0.008905 0.975208 0.011495 0.004392 0.022092 0.611448 0.018828 0.347632 0.538109 0.125313 0.241515 0.095063 0.456841 0.205124 0.177213 0.160822 0.372926 0.189134 0.195747 0.242193 0.217155 0.198027 0.300393 0.284425 0.277630 0.187849 0.237049 0.297472 Consensus sequence: HDDAHCGAAACYAVDDD Reverse complement motif 0.297472 0.187849 0.237049 0.277630 0.217155 0.300393 0.198027 0.284425 0.242193 0.189134 0.195747 0.372926 0.160822 0.205124 0.177213 0.456841 0.095063 0.125313 0.241515 0.538109 0.022092 0.018828 0.611448 0.347632 0.008905 0.011495 0.975208 0.004392 0.003247 0.003609 0.003047 0.990097 0.291864 0.002741 0.006725 0.698671 0.002166 0.005320 0.008639 0.983875 0.019621 0.976266 0.002231 0.001882 0.029853 0.006383 0.908514 0.055250 0.345899 0.339707 0.114445 0.199950 0.072701 0.053933 0.205778 0.667588 0.255033 0.354898 0.128823 0.261246 0.361507 0.135162 0.190389 0.312941 0.256714 0.149403 0.363080 0.230804 Consensus sequence: DHDBTKGTTTCGHTHDD Alignment: DHDBTKGTTTCGHTHDD -----TGTRT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_primary Original Motif Original Motif Backward 6 5 0.025597 Species: Mus musculus Original motif 0.282316 0.413385 0.114930 0.189369 0.341654 0.135011 0.267943 0.255392 0.399523 0.173081 0.168845 0.258551 0.365086 0.196360 0.211856 0.226699 0.243321 0.177839 0.224206 0.354635 0.029873 0.808479 0.036309 0.125339 0.004945 0.815465 0.040635 0.138955 0.934557 0.058944 0.005027 0.001471 0.005099 0.003998 0.986148 0.004755 0.969304 0.020594 0.001929 0.008173 0.008189 0.984816 0.004199 0.002795 0.669579 0.012182 0.282153 0.036085 0.130511 0.171241 0.334041 0.364207 0.198982 0.289660 0.252392 0.258966 0.423172 0.190978 0.164411 0.221440 0.213519 0.287388 0.294414 0.204679 0.371956 0.285061 0.150191 0.192792 Consensus sequence: HDHDDCCAGACABBHVH Reverse complement motif 0.192792 0.285061 0.150191 0.371956 0.213519 0.294414 0.287388 0.204679 0.221440 0.190978 0.164411 0.423172 0.198982 0.252392 0.289660 0.258966 0.364207 0.171241 0.334041 0.130511 0.036085 0.012182 0.282153 0.669579 0.008189 0.004199 0.984816 0.002795 0.008173 0.020594 0.001929 0.969304 0.005099 0.986148 0.003998 0.004755 0.001471 0.058944 0.005027 0.934557 0.004945 0.040635 0.815465 0.138955 0.029873 0.036309 0.808479 0.125339 0.354635 0.177839 0.224206 0.243321 0.226699 0.196360 0.211856 0.365086 0.258551 0.173081 0.168845 0.399523 0.255392 0.135011 0.267943 0.341654 0.282316 0.114930 0.413385 0.189369 Consensus sequence: HVHBVTGTCTGGDDHDD Alignment: HDHDDCCAGACABBHVH -------AMACA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 19 Motif name: Motif 19 Original motif 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.472754 0.527246 0.000000 0.000000 1.000000 0.000000 0.000000 0.496318 0.000000 0.000000 0.503682 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: AGSCWGG Reserve complement motif 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.503682 0.000000 0.000000 0.496318 0.000000 0.000000 1.000000 0.000000 0.000000 0.527246 0.472754 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: CCWGSCT ************************************************************************ Best Matches for Motif ID 19 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00035 Hic1_primary Original Motif Reverse Complement Backward 7 7 0.000000 Species: Mus musculus Original motif 0.275207 0.211375 0.250277 0.263141 0.135064 0.327571 0.217556 0.319808 0.145659 0.242586 0.267179 0.344576 0.656519 0.009712 0.315174 0.018595 0.002265 0.004755 0.001656 0.991325 0.041873 0.001128 0.955340 0.001659 0.001306 0.974834 0.022215 0.001645 0.001978 0.992066 0.002638 0.003317 0.921032 0.072388 0.001237 0.005344 0.582027 0.211694 0.115736 0.090542 0.005990 0.927450 0.028306 0.038254 0.027374 0.799879 0.053667 0.119080 0.203510 0.191263 0.168997 0.436229 0.402253 0.154087 0.291346 0.152314 0.201201 0.414412 0.145330 0.239056 0.241094 0.332661 0.143464 0.282781 Consensus sequence: DBBATGCCAACCHVHH Reverse complement motif 0.241094 0.143464 0.332661 0.282781 0.201201 0.145330 0.414412 0.239056 0.152314 0.154087 0.291346 0.402253 0.436229 0.191263 0.168997 0.203510 0.027374 0.053667 0.799879 0.119080 0.005990 0.028306 0.927450 0.038254 0.090542 0.211694 0.115736 0.582027 0.005344 0.072388 0.001237 0.921032 0.001978 0.002638 0.992066 0.003317 0.001306 0.022215 0.974834 0.001645 0.041873 0.955340 0.001128 0.001659 0.991325 0.004755 0.001656 0.002265 0.018595 0.009712 0.315174 0.656519 0.344576 0.242586 0.267179 0.145659 0.135064 0.217556 0.327571 0.319808 0.263141 0.211375 0.250277 0.275207 Consensus sequence: DDBHGGTTGGCATVBD Alignment: DDBHGGTTGGCATVBD ---AGSCWGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00070 Gcm1_primary Original Motif Reverse Complement Forward 5 7 0.005604 Species: Mus musculus Original motif 0.251681 0.208273 0.178525 0.361520 0.323865 0.334303 0.205542 0.136289 0.308084 0.277004 0.326203 0.088709 0.280609 0.171416 0.168918 0.379057 0.734441 0.031257 0.211473 0.022829 0.006187 0.990281 0.001052 0.002480 0.005819 0.990856 0.001498 0.001826 0.043838 0.936502 0.001550 0.018110 0.022607 0.058037 0.901005 0.018350 0.000424 0.787011 0.026547 0.186017 0.980774 0.002884 0.011288 0.005054 0.009100 0.110310 0.067399 0.813192 0.247510 0.310539 0.250093 0.191858 0.279511 0.211998 0.250717 0.257774 0.264451 0.270002 0.142606 0.322941 0.227607 0.212076 0.267214 0.293102 Consensus sequence: HVVHACCCGCATVDHD Reverse complement motif 0.293102 0.212076 0.267214 0.227607 0.322941 0.270002 0.142606 0.264451 0.257774 0.211998 0.250717 0.279511 0.247510 0.250093 0.310539 0.191858 0.813192 0.110310 0.067399 0.009100 0.005054 0.002884 0.011288 0.980774 0.000424 0.026547 0.787011 0.186017 0.022607 0.901005 0.058037 0.018350 0.043838 0.001550 0.936502 0.018110 0.005819 0.001498 0.990856 0.001826 0.006187 0.001052 0.990281 0.002480 0.022829 0.031257 0.211473 0.734441 0.379057 0.171416 0.168918 0.280609 0.308084 0.326203 0.277004 0.088709 0.323865 0.205542 0.334303 0.136289 0.361520 0.208273 0.178525 0.251681 Consensus sequence: DHDVATGCGGGTHVVH Alignment: DHDVATGCGGGTHVVH ----AGSCWGG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00095 Zfp691_secondary Original Motif Reverse Complement Forward 9 7 0.010915 Species: Mus musculus Original motif 0.236868 0.155338 0.295091 0.312703 0.522782 0.133021 0.177386 0.166812 0.192915 0.374870 0.221406 0.210809 0.146546 0.199196 0.418035 0.236223 0.454326 0.095049 0.151770 0.298855 0.027956 0.023096 0.878335 0.070614 0.916030 0.020358 0.039894 0.023717 0.010595 0.938036 0.039415 0.011954 0.007271 0.014948 0.007990 0.969792 0.014291 0.964878 0.011126 0.009705 0.154586 0.759294 0.050151 0.035969 0.051021 0.268239 0.053410 0.627330 0.158293 0.386843 0.113152 0.341713 0.281766 0.184139 0.187916 0.346179 0.292444 0.267259 0.241323 0.198974 0.425732 0.262331 0.149076 0.162861 0.205385 0.384164 0.267912 0.142538 Consensus sequence: DABBWGACTCCTHDVHV Reverse complement motif 0.205385 0.267912 0.384164 0.142538 0.162861 0.262331 0.149076 0.425732 0.198974 0.267259 0.241323 0.292444 0.346179 0.184139 0.187916 0.281766 0.158293 0.113152 0.386843 0.341713 0.627330 0.268239 0.053410 0.051021 0.154586 0.050151 0.759294 0.035969 0.014291 0.011126 0.964878 0.009705 0.969792 0.014948 0.007990 0.007271 0.010595 0.039415 0.938036 0.011954 0.023717 0.020358 0.039894 0.916030 0.027956 0.878335 0.023096 0.070614 0.298855 0.095049 0.151770 0.454326 0.146546 0.418035 0.199196 0.236223 0.192915 0.221406 0.374870 0.210809 0.166812 0.133021 0.177386 0.522782 0.312703 0.155338 0.295091 0.236868 Consensus sequence: VHBDDAGGAGTCWBBTD Alignment: VHBDDAGGAGTCWBBTD --------AGSCWGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00006 Zic3_secondary Reverse Complement Reverse Complement Forward 3 7 0.010924 Species: Mus musculus Original motif 0.225537 0.223459 0.280507 0.270498 0.332396 0.181810 0.207290 0.278505 0.309873 0.017922 0.386135 0.286070 0.101947 0.871607 0.020267 0.006179 0.541366 0.089100 0.242170 0.127364 0.003307 0.969997 0.002414 0.024283 0.903286 0.021590 0.015872 0.059253 0.039887 0.009732 0.945083 0.005298 0.001704 0.827209 0.006276 0.164810 0.723052 0.003102 0.221051 0.052795 0.011758 0.024398 0.560633 0.403211 0.003656 0.012952 0.939586 0.043807 0.477846 0.270399 0.113113 0.138642 0.225706 0.298505 0.258523 0.217266 0.365251 0.191780 0.197411 0.245557 Consensus sequence: DDDCACAGCAKGHVD Reverse complement motif 0.245557 0.191780 0.197411 0.365251 0.225706 0.258523 0.298505 0.217266 0.138642 0.270399 0.113113 0.477846 0.003656 0.939586 0.012952 0.043807 0.011758 0.560633 0.024398 0.403211 0.052795 0.003102 0.221051 0.723052 0.001704 0.006276 0.827209 0.164810 0.039887 0.945083 0.009732 0.005298 0.059253 0.021590 0.015872 0.903286 0.003307 0.002414 0.969997 0.024283 0.127364 0.089100 0.242170 0.541366 0.101947 0.020267 0.871607 0.006179 0.309873 0.386135 0.017922 0.286070 0.278505 0.181810 0.207290 0.332396 0.225537 0.280507 0.223459 0.270498 Consensus sequence: DVHCYTGCTGTGHDH Alignment: DVHCYTGCTGTGHDH --CCWGSCT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_primary Reverse Complement Original Motif Forward 6 7 0.011450 Species: Mus musculus Original motif 0.282316 0.413385 0.114930 0.189369 0.341654 0.135011 0.267943 0.255392 0.399523 0.173081 0.168845 0.258551 0.365086 0.196360 0.211856 0.226699 0.243321 0.177839 0.224206 0.354635 0.029873 0.808479 0.036309 0.125339 0.004945 0.815465 0.040635 0.138955 0.934557 0.058944 0.005027 0.001471 0.005099 0.003998 0.986148 0.004755 0.969304 0.020594 0.001929 0.008173 0.008189 0.984816 0.004199 0.002795 0.669579 0.012182 0.282153 0.036085 0.130511 0.171241 0.334041 0.364207 0.198982 0.289660 0.252392 0.258966 0.423172 0.190978 0.164411 0.221440 0.213519 0.287388 0.294414 0.204679 0.371956 0.285061 0.150191 0.192792 Consensus sequence: HDHDDCCAGACABBHVH Reverse complement motif 0.192792 0.285061 0.150191 0.371956 0.213519 0.294414 0.287388 0.204679 0.221440 0.190978 0.164411 0.423172 0.198982 0.252392 0.289660 0.258966 0.364207 0.171241 0.334041 0.130511 0.036085 0.012182 0.282153 0.669579 0.008189 0.004199 0.984816 0.002795 0.008173 0.020594 0.001929 0.969304 0.005099 0.986148 0.003998 0.004755 0.001471 0.058944 0.005027 0.934557 0.004945 0.040635 0.815465 0.138955 0.029873 0.036309 0.808479 0.125339 0.354635 0.177839 0.224206 0.243321 0.226699 0.196360 0.211856 0.365086 0.258551 0.173081 0.168845 0.399523 0.255392 0.135011 0.267943 0.341654 0.282316 0.114930 0.413385 0.189369 Consensus sequence: HVHBVTGTCTGGDDHDD Alignment: HDHDDCCAGACABBHVH -----CCWGSCT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primary Original Motif Reverse Complement Forward 6 7 0.011526 Species: Mus musculus Original motif 0.472795 0.179227 0.091251 0.256726 0.036521 0.159743 0.204840 0.598896 0.164582 0.312805 0.221324 0.301289 0.237069 0.249050 0.293048 0.220833 0.401949 0.225181 0.229401 0.143469 0.161422 0.494334 0.252207 0.092036 0.252940 0.177721 0.369400 0.199939 0.119630 0.024651 0.849920 0.005798 0.000962 0.002398 0.990616 0.006023 0.937852 0.027016 0.034535 0.000597 0.008963 0.987756 0.000629 0.002652 0.001584 0.992898 0.002349 0.003169 0.956822 0.027342 0.002484 0.013352 0.009873 0.987759 0.000988 0.001381 0.016397 0.980856 0.000369 0.002378 0.081761 0.758555 0.038572 0.121112 0.371713 0.091838 0.448027 0.088423 0.111617 0.121913 0.683885 0.082585 0.334562 0.102916 0.436488 0.126034 0.210362 0.101261 0.238339 0.450037 0.169041 0.271583 0.320799 0.238576 0.140316 0.049885 0.735236 0.074563 Consensus sequence: HTBVVVDGGACCACCCRGRDBG Reverse complement motif 0.140316 0.735236 0.049885 0.074563 0.169041 0.320799 0.271583 0.238576 0.450037 0.101261 0.238339 0.210362 0.334562 0.436488 0.102916 0.126034 0.111617 0.683885 0.121913 0.082585 0.371713 0.448027 0.091838 0.088423 0.081761 0.038572 0.758555 0.121112 0.016397 0.000369 0.980856 0.002378 0.009873 0.000988 0.987759 0.001381 0.013352 0.027342 0.002484 0.956822 0.001584 0.002349 0.992898 0.003169 0.008963 0.000629 0.987756 0.002652 0.000597 0.027016 0.034535 0.937852 0.000962 0.990616 0.002398 0.006023 0.119630 0.849920 0.024651 0.005798 0.252940 0.369400 0.177721 0.199939 0.161422 0.252207 0.494334 0.092036 0.143469 0.225181 0.229401 0.401949 0.237069 0.293048 0.249050 0.220833 0.164582 0.221324 0.312805 0.301289 0.598896 0.159743 0.204840 0.036521 0.256726 0.179227 0.091251 0.472795 Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH Alignment: CBDMCMGGGTGGTCCHVBVBAH -----AGSCWGG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Reverse Complement Reverse Complement Backward 8 7 0.011749 Species: Mus musculus Original motif 0.204923 0.208846 0.365383 0.220848 0.294304 0.300143 0.167287 0.238266 0.109711 0.619514 0.117379 0.153396 0.178979 0.378580 0.230177 0.212264 0.159594 0.542602 0.118178 0.179627 0.125206 0.430074 0.151826 0.292894 0.097692 0.709845 0.116956 0.075506 0.148292 0.565912 0.037632 0.248164 0.077951 0.034190 0.855503 0.032356 0.001657 0.001061 0.971877 0.025405 0.001926 0.001084 0.991712 0.005278 0.033031 0.012001 0.057796 0.897171 0.002723 0.002647 0.993348 0.001281 0.003261 0.000963 0.987199 0.008577 0.000611 0.090925 0.074857 0.833608 0.015299 0.978878 0.004949 0.000874 0.013368 0.600902 0.033485 0.352245 0.231949 0.149575 0.118804 0.499672 0.267580 0.186002 0.371242 0.175176 0.264884 0.223483 0.110082 0.401551 0.221365 0.170121 0.179559 0.428955 0.112997 0.692930 0.139981 0.054092 0.460305 0.207883 0.155111 0.176702 Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Reverse complement motif 0.176702 0.207883 0.155111 0.460305 0.112997 0.139981 0.692930 0.054092 0.428955 0.170121 0.179559 0.221365 0.401551 0.223483 0.110082 0.264884 0.267580 0.371242 0.186002 0.175176 0.499672 0.149575 0.118804 0.231949 0.013368 0.033485 0.600902 0.352245 0.015299 0.004949 0.978878 0.000874 0.833608 0.090925 0.074857 0.000611 0.003261 0.987199 0.000963 0.008577 0.002723 0.993348 0.002647 0.001281 0.897171 0.012001 0.057796 0.033031 0.001926 0.991712 0.001084 0.005278 0.001657 0.971877 0.001061 0.025405 0.077951 0.855503 0.034190 0.032356 0.148292 0.037632 0.565912 0.248164 0.097692 0.116956 0.709845 0.075506 0.125206 0.151826 0.430074 0.292894 0.159594 0.118178 0.542602 0.179627 0.178979 0.230177 0.378580 0.212264 0.109711 0.117379 0.619514 0.153396 0.294304 0.167287 0.300143 0.238266 0.204923 0.365383 0.208846 0.220848 Consensus sequence: HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB ---------CCWGSCT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primary Original Motif Reverse Complement Forward 6 7 0.013168 Species: Mus musculus Original motif 0.180868 0.321661 0.134642 0.362829 0.232215 0.134289 0.315356 0.318141 0.065068 0.093681 0.569842 0.271408 0.370822 0.229680 0.154738 0.244759 0.323039 0.182873 0.173588 0.320500 0.175039 0.266898 0.276080 0.281984 0.412669 0.147730 0.146326 0.293275 0.325953 0.028805 0.629596 0.015646 0.003017 0.001766 0.979711 0.015507 0.888973 0.040666 0.069420 0.000941 0.017309 0.979155 0.000899 0.002637 0.001732 0.988816 0.004856 0.004596 0.889763 0.078125 0.010384 0.021729 0.007566 0.987081 0.001421 0.003932 0.027797 0.966593 0.000878 0.004731 0.025816 0.867003 0.065749 0.041433 0.220658 0.075256 0.582904 0.121182 0.088946 0.283695 0.565345 0.062015 0.328012 0.241332 0.305901 0.124755 0.307302 0.137589 0.375928 0.179181 0.298752 0.231470 0.315255 0.154524 0.094565 0.142901 0.705696 0.056838 Consensus sequence: HDGHHBHRGACCACCCGSVDVG Reverse complement motif 0.094565 0.705696 0.142901 0.056838 0.298752 0.315255 0.231470 0.154524 0.307302 0.375928 0.137589 0.179181 0.124755 0.241332 0.305901 0.328012 0.088946 0.565345 0.283695 0.062015 0.220658 0.582904 0.075256 0.121182 0.025816 0.065749 0.867003 0.041433 0.027797 0.000878 0.966593 0.004731 0.007566 0.001421 0.987081 0.003932 0.021729 0.078125 0.010384 0.889763 0.001732 0.004856 0.988816 0.004596 0.017309 0.000899 0.979155 0.002637 0.000941 0.040666 0.069420 0.888973 0.003017 0.979711 0.001766 0.015507 0.325953 0.629596 0.028805 0.015646 0.293275 0.147730 0.146326 0.412669 0.281984 0.266898 0.276080 0.175039 0.320500 0.182873 0.173588 0.323039 0.244759 0.229680 0.154738 0.370822 0.065068 0.569842 0.093681 0.271408 0.318141 0.134289 0.315356 0.232215 0.362829 0.321661 0.134642 0.180868 Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH Alignment: CVHBSCGGGTGGTCMHVHHCDH -----AGSCWGG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00081 Mybl1_secondary Original Motif Reverse Complement Backward 7 7 0.013603 Species: Mus musculus Original motif 0.205989 0.268359 0.263479 0.262174 0.149858 0.330201 0.339741 0.180201 0.440045 0.213697 0.179742 0.166516 0.055722 0.767204 0.049077 0.127997 0.060389 0.768239 0.011175 0.160197 0.980265 0.008906 0.004964 0.005865 0.976251 0.015501 0.004122 0.004126 0.006449 0.982888 0.005200 0.005463 0.025776 0.139679 0.048415 0.786131 0.009775 0.008352 0.975178 0.006695 0.187590 0.568007 0.036604 0.207799 0.108890 0.808175 0.017705 0.065231 0.242101 0.097932 0.555551 0.104417 0.281058 0.212523 0.104136 0.402283 0.150908 0.188201 0.411156 0.249734 Consensus sequence: BBVCCAACTGCCGHB Reverse complement motif 0.150908 0.411156 0.188201 0.249734 0.402283 0.212523 0.104136 0.281058 0.242101 0.555551 0.097932 0.104417 0.108890 0.017705 0.808175 0.065231 0.187590 0.036604 0.568007 0.207799 0.009775 0.975178 0.008352 0.006695 0.786131 0.139679 0.048415 0.025776 0.006449 0.005200 0.982888 0.005463 0.004126 0.015501 0.004122 0.976251 0.005865 0.008906 0.004964 0.980265 0.060389 0.011175 0.768239 0.160197 0.055722 0.049077 0.767204 0.127997 0.166516 0.213697 0.179742 0.440045 0.149858 0.339741 0.330201 0.180201 0.205989 0.263479 0.268359 0.262174 Consensus sequence: BHCGGCAGTTGGBBB Alignment: BHCGGCAGTTGGBBB --AGSCWGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_secondary Reverse Complement Reverse Complement Backward 7 7 0.013956 Species: Mus musculus Original motif 0.201522 0.336845 0.183740 0.277892 0.238705 0.354378 0.165332 0.241585 0.350858 0.031427 0.308482 0.309233 0.104423 0.870794 0.018676 0.006107 0.313246 0.259944 0.277570 0.149241 0.003590 0.973377 0.002520 0.020513 0.899716 0.025489 0.015458 0.059336 0.049224 0.006415 0.938214 0.006147 0.002021 0.859631 0.007903 0.130445 0.772818 0.002659 0.187334 0.037190 0.008456 0.015170 0.594695 0.381679 0.004118 0.009188 0.961506 0.025188 0.367151 0.230955 0.204475 0.197419 0.267508 0.193660 0.430070 0.108762 0.444449 0.099127 0.212182 0.244241 Consensus sequence: HHDCVCAGCAKGVVD Reverse complement motif 0.244241 0.099127 0.212182 0.444449 0.267508 0.430070 0.193660 0.108762 0.197419 0.230955 0.204475 0.367151 0.004118 0.961506 0.009188 0.025188 0.008456 0.594695 0.015170 0.381679 0.037190 0.002659 0.187334 0.772818 0.002021 0.007903 0.859631 0.130445 0.049224 0.938214 0.006415 0.006147 0.059336 0.025489 0.015458 0.899716 0.003590 0.002520 0.973377 0.020513 0.149241 0.259944 0.277570 0.313246 0.104423 0.018676 0.870794 0.006107 0.309233 0.031427 0.308482 0.350858 0.238705 0.165332 0.354378 0.241585 0.201522 0.183740 0.336845 0.277892 Consensus sequence: DVBCYTGCTGBGDDD Alignment: DVBCYTGCTGBGDDD --CCWGSCT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 20 Motif name: Motif 20 Original motif 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.265176 0.000000 0.734824 0.000000 0.000000 1.000000 0.000000 0.000000 0.591054 0.000000 0.408946 Consensus sequence: CTCTGY Reserve complement motif 0.000000 0.000000 0.591054 0.408946 0.000000 1.000000 0.000000 0.000000 0.734824 0.265176 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: KCAGAG ************************************************************************ Best Matches for Motif ID 20 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_primary Reverse Complement Reverse Complement Forward 7 6 0.000000 Species: Mus musculus Original motif 0.401190 0.144405 0.268531 0.185874 0.430224 0.168519 0.221247 0.180011 0.172575 0.268499 0.274136 0.284789 0.150971 0.297110 0.290868 0.261051 0.133421 0.282842 0.434718 0.149019 0.042798 0.941105 0.001785 0.014312 0.890788 0.002551 0.103316 0.003345 0.001887 0.951368 0.043722 0.003023 0.011633 0.002218 0.002269 0.983880 0.003597 0.003728 0.984819 0.007856 0.002946 0.903520 0.072457 0.021077 0.908487 0.057072 0.018256 0.016185 0.076237 0.329864 0.228896 0.365003 0.144926 0.162981 0.177370 0.514722 0.124970 0.327876 0.295814 0.251341 0.144592 0.313887 0.301912 0.239609 0.108463 0.241747 0.350296 0.299494 Consensus sequence: DDBBBCACTGCABTBBB Reverse complement motif 0.108463 0.350296 0.241747 0.299494 0.144592 0.301912 0.313887 0.239609 0.124970 0.295814 0.327876 0.251341 0.514722 0.162981 0.177370 0.144926 0.365003 0.329864 0.228896 0.076237 0.016185 0.057072 0.018256 0.908487 0.002946 0.072457 0.903520 0.021077 0.003597 0.984819 0.003728 0.007856 0.983880 0.002218 0.002269 0.011633 0.001887 0.043722 0.951368 0.003023 0.003345 0.002551 0.103316 0.890788 0.042798 0.001785 0.941105 0.014312 0.133421 0.434718 0.282842 0.149019 0.150971 0.290868 0.297110 0.261051 0.284789 0.268499 0.274136 0.172575 0.180011 0.168519 0.221247 0.430224 0.185874 0.144405 0.268531 0.401190 Consensus sequence: BBBAVTGCAGTGBBVDD Alignment: BBBAVTGCAGTGBBVDD ------KCAGAG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00018 Irf4_secondary Reverse Complement Reverse Complement Backward 7 6 0.006109 Species: Mus musculus Original motif 0.288101 0.247588 0.287461 0.176850 0.187625 0.276525 0.352820 0.183030 0.175230 0.300094 0.203295 0.321380 0.564519 0.107594 0.098018 0.229869 0.150412 0.310868 0.054960 0.483760 0.034907 0.015505 0.034843 0.914745 0.041776 0.885897 0.032309 0.040017 0.046210 0.168474 0.066613 0.718702 0.031764 0.913321 0.024478 0.030437 0.191755 0.029057 0.754998 0.024190 0.206291 0.097100 0.623727 0.072881 0.311511 0.037435 0.173101 0.477953 0.205101 0.316738 0.081628 0.396533 0.243888 0.196473 0.292453 0.267186 0.167980 0.404608 0.259107 0.168305 Consensus sequence: VVBAYTCTCGGWHDB Reverse complement motif 0.167980 0.259107 0.404608 0.168305 0.243888 0.292453 0.196473 0.267186 0.396533 0.316738 0.081628 0.205101 0.477953 0.037435 0.173101 0.311511 0.206291 0.623727 0.097100 0.072881 0.191755 0.754998 0.029057 0.024190 0.031764 0.024478 0.913321 0.030437 0.718702 0.168474 0.066613 0.046210 0.041776 0.032309 0.885897 0.040017 0.914745 0.015505 0.034843 0.034907 0.483760 0.310868 0.054960 0.150412 0.229869 0.107594 0.098018 0.564519 0.321380 0.300094 0.203295 0.175230 0.187625 0.352820 0.276525 0.183030 0.176850 0.247588 0.287461 0.288101 Consensus sequence: BHHWCCGAGAMTVVB Alignment: BHHWCCGAGAMTVVB ---KCAGAG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00095 Zfp691_secondary Reverse Complement Reverse Complement Forward 5 6 0.006482 Species: Mus musculus Original motif 0.236868 0.155338 0.295091 0.312703 0.522782 0.133021 0.177386 0.166812 0.192915 0.374870 0.221406 0.210809 0.146546 0.199196 0.418035 0.236223 0.454326 0.095049 0.151770 0.298855 0.027956 0.023096 0.878335 0.070614 0.916030 0.020358 0.039894 0.023717 0.010595 0.938036 0.039415 0.011954 0.007271 0.014948 0.007990 0.969792 0.014291 0.964878 0.011126 0.009705 0.154586 0.759294 0.050151 0.035969 0.051021 0.268239 0.053410 0.627330 0.158293 0.386843 0.113152 0.341713 0.281766 0.184139 0.187916 0.346179 0.292444 0.267259 0.241323 0.198974 0.425732 0.262331 0.149076 0.162861 0.205385 0.384164 0.267912 0.142538 Consensus sequence: DABBWGACTCCTHDVHV Reverse complement motif 0.205385 0.267912 0.384164 0.142538 0.162861 0.262331 0.149076 0.425732 0.198974 0.267259 0.241323 0.292444 0.346179 0.184139 0.187916 0.281766 0.158293 0.113152 0.386843 0.341713 0.627330 0.268239 0.053410 0.051021 0.154586 0.050151 0.759294 0.035969 0.014291 0.011126 0.964878 0.009705 0.969792 0.014948 0.007990 0.007271 0.010595 0.039415 0.938036 0.011954 0.023717 0.020358 0.039894 0.916030 0.027956 0.878335 0.023096 0.070614 0.298855 0.095049 0.151770 0.454326 0.146546 0.418035 0.199196 0.236223 0.192915 0.221406 0.374870 0.210809 0.166812 0.133021 0.177386 0.522782 0.312703 0.155338 0.295091 0.236868 Consensus sequence: VHBDDAGGAGTCWBBTD Alignment: VHBDDAGGAGTCWBBTD ----KCAGAG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00006 Zic3_secondary Reverse Complement Original Motif Backward 8 6 0.008531 Species: Mus musculus Original motif 0.225537 0.223459 0.280507 0.270498 0.332396 0.181810 0.207290 0.278505 0.309873 0.017922 0.386135 0.286070 0.101947 0.871607 0.020267 0.006179 0.541366 0.089100 0.242170 0.127364 0.003307 0.969997 0.002414 0.024283 0.903286 0.021590 0.015872 0.059253 0.039887 0.009732 0.945083 0.005298 0.001704 0.827209 0.006276 0.164810 0.723052 0.003102 0.221051 0.052795 0.011758 0.024398 0.560633 0.403211 0.003656 0.012952 0.939586 0.043807 0.477846 0.270399 0.113113 0.138642 0.225706 0.298505 0.258523 0.217266 0.365251 0.191780 0.197411 0.245557 Consensus sequence: DDDCACAGCAKGHVD Reverse complement motif 0.245557 0.191780 0.197411 0.365251 0.225706 0.258523 0.298505 0.217266 0.138642 0.270399 0.113113 0.477846 0.003656 0.939586 0.012952 0.043807 0.011758 0.560633 0.024398 0.403211 0.052795 0.003102 0.221051 0.723052 0.001704 0.006276 0.827209 0.164810 0.039887 0.945083 0.009732 0.005298 0.059253 0.021590 0.015872 0.903286 0.003307 0.002414 0.969997 0.024283 0.127364 0.089100 0.242170 0.541366 0.101947 0.020267 0.871607 0.006179 0.309873 0.386135 0.017922 0.286070 0.278505 0.181810 0.207290 0.332396 0.225537 0.280507 0.223459 0.270498 Consensus sequence: DVHCYTGCTGTGHDH Alignment: DDDCACAGCAKGHVD --KCAGAG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_secondary Original Motif Reverse Complement Backward 2 6 0.008950 Species: Mus musculus Original motif 0.182057 0.230014 0.276532 0.311397 0.122004 0.156883 0.366166 0.354947 0.209446 0.335433 0.185677 0.269444 0.140035 0.276547 0.302466 0.280952 0.124879 0.019371 0.809895 0.045854 0.647807 0.117014 0.183956 0.051224 0.021434 0.011745 0.954633 0.012188 0.017853 0.009441 0.315429 0.657277 0.166123 0.008326 0.807215 0.018337 0.022775 0.008972 0.947283 0.020970 0.038795 0.033592 0.781209 0.146405 0.728916 0.032888 0.088836 0.149360 0.197826 0.427858 0.055755 0.318561 0.264938 0.196184 0.092516 0.446362 0.267969 0.195624 0.318766 0.217641 0.225006 0.250404 0.267265 0.257324 Consensus sequence: BBHBGAGTGGGAHHDB Reverse complement motif 0.225006 0.267265 0.250404 0.257324 0.267969 0.318766 0.195624 0.217641 0.446362 0.196184 0.092516 0.264938 0.197826 0.055755 0.427858 0.318561 0.149360 0.032888 0.088836 0.728916 0.038795 0.781209 0.033592 0.146405 0.022775 0.947283 0.008972 0.020970 0.166123 0.807215 0.008326 0.018337 0.657277 0.009441 0.315429 0.017853 0.021434 0.954633 0.011745 0.012188 0.051224 0.117014 0.183956 0.647807 0.124879 0.809895 0.019371 0.045854 0.140035 0.302466 0.276547 0.280952 0.209446 0.185677 0.335433 0.269444 0.122004 0.366166 0.156883 0.354947 0.311397 0.230014 0.276532 0.182057 Consensus sequence: BHHDTCCCACTCBDBV Alignment: BHHDTCCCACTCBDBV ---------CTCTGY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00095 Zfp691_primary Original Motif Reverse Complement Forward 9 6 0.009559 Species: Mus musculus Original motif 0.099567 0.441928 0.195388 0.263117 0.246130 0.144776 0.333677 0.275418 0.313398 0.260626 0.161738 0.264239 0.441985 0.199975 0.211839 0.146201 0.122299 0.673789 0.078912 0.125000 0.938960 0.009295 0.048527 0.003217 0.003807 0.001797 0.985916 0.008480 0.006543 0.001803 0.001788 0.989866 0.014213 0.000681 0.981108 0.003998 0.005018 0.989568 0.000804 0.004610 0.001371 0.007539 0.002430 0.988659 0.001686 0.992039 0.002898 0.003378 0.516097 0.399155 0.057953 0.026795 0.118858 0.390408 0.146017 0.344717 0.306387 0.166100 0.132122 0.395391 0.388407 0.129054 0.288224 0.194315 0.308085 0.152185 0.160807 0.378924 Consensus sequence: BDHVCAGTGCTCMBHDD Reverse complement motif 0.378924 0.152185 0.160807 0.308085 0.194315 0.129054 0.288224 0.388407 0.395391 0.166100 0.132122 0.306387 0.118858 0.146017 0.390408 0.344717 0.026795 0.399155 0.057953 0.516097 0.001686 0.002898 0.992039 0.003378 0.988659 0.007539 0.002430 0.001371 0.005018 0.000804 0.989568 0.004610 0.014213 0.981108 0.000681 0.003998 0.989866 0.001803 0.001788 0.006543 0.003807 0.985916 0.001797 0.008480 0.003217 0.009295 0.048527 0.938960 0.122299 0.078912 0.673789 0.125000 0.146201 0.199975 0.211839 0.441985 0.264239 0.260626 0.161738 0.313398 0.246130 0.333677 0.144776 0.275418 0.099567 0.195388 0.441928 0.263117 Consensus sequence: DDHBYGAGCACTGBHHB Alignment: DDHBYGAGCACTGBHHB --------CTCTGY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Reverse Complement Reverse Complement Backward 6 6 0.010618 Species: Mus musculus Original motif 0.281920 0.214207 0.278077 0.225796 0.325566 0.151435 0.298797 0.224202 0.290253 0.145824 0.243443 0.320480 0.069286 0.404645 0.141614 0.384454 0.070044 0.621448 0.142647 0.165862 0.007295 0.907657 0.038110 0.046938 0.015587 0.018273 0.000658 0.965482 0.005527 0.005886 0.001905 0.986682 0.024512 0.001189 0.001344 0.972955 0.007384 0.025221 0.952270 0.015125 0.966438 0.000630 0.002693 0.030239 0.082252 0.001173 0.001495 0.915080 0.030255 0.677155 0.275323 0.017267 0.199467 0.118815 0.056814 0.624905 0.345445 0.169597 0.216831 0.268127 0.278106 0.150864 0.173693 0.397336 0.251834 0.339733 0.219703 0.188730 Consensus sequence: DDDYCCTTTGATCTDDV Reverse complement motif 0.251834 0.219703 0.339733 0.188730 0.397336 0.150864 0.173693 0.278106 0.268127 0.169597 0.216831 0.345445 0.624905 0.118815 0.056814 0.199467 0.030255 0.275323 0.677155 0.017267 0.915080 0.001173 0.001495 0.082252 0.030239 0.000630 0.002693 0.966438 0.007384 0.952270 0.025221 0.015125 0.972955 0.001189 0.001344 0.024512 0.986682 0.005886 0.001905 0.005527 0.965482 0.018273 0.000658 0.015587 0.007295 0.038110 0.907657 0.046938 0.070044 0.142647 0.621448 0.165862 0.069286 0.141614 0.404645 0.384454 0.320480 0.145824 0.243443 0.290253 0.224202 0.151435 0.298797 0.325566 0.225796 0.214207 0.278077 0.281920 Consensus sequence: VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD ------KCAGAG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00102 Zic1_secondary Reverse Complement Original Motif Backward 8 6 0.012263 Species: Mus musculus Original motif 0.161683 0.405114 0.171743 0.261460 0.259478 0.357988 0.146793 0.235741 0.371334 0.026439 0.283598 0.318630 0.092229 0.883389 0.018758 0.005623 0.419591 0.169874 0.253266 0.157270 0.002985 0.976375 0.002722 0.017918 0.909381 0.021357 0.013299 0.055963 0.039418 0.007014 0.948302 0.005266 0.001711 0.845894 0.005756 0.146640 0.803792 0.003049 0.148687 0.044472 0.015314 0.017153 0.680239 0.287294 0.003793 0.011414 0.937403 0.047390 0.431916 0.266291 0.144154 0.157638 0.269331 0.239338 0.366817 0.124513 0.395873 0.103980 0.214796 0.285351 Consensus sequence: BHDCVCAGCAGGHVD Reverse complement motif 0.285351 0.103980 0.214796 0.395873 0.269331 0.366817 0.239338 0.124513 0.157638 0.266291 0.144154 0.431916 0.003793 0.937403 0.011414 0.047390 0.015314 0.680239 0.017153 0.287294 0.044472 0.003049 0.148687 0.803792 0.001711 0.005756 0.845894 0.146640 0.039418 0.948302 0.007014 0.005266 0.055963 0.021357 0.013299 0.909381 0.002985 0.002722 0.976375 0.017918 0.157270 0.169874 0.253266 0.419591 0.092229 0.018758 0.883389 0.005623 0.318630 0.026439 0.283598 0.371334 0.259478 0.146793 0.357988 0.235741 0.161683 0.171743 0.405114 0.261460 Consensus sequence: DVHCCTGCTGBGDDB Alignment: BHDCVCAGCAGGHVD --KCAGAG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00083 Tcf7l2_primary Reverse Complement Reverse Complement Backward 6 6 0.013124 Species: Mus musculus Original motif 0.285725 0.187143 0.254855 0.272277 0.276264 0.157893 0.258178 0.307665 0.238788 0.161120 0.254018 0.346074 0.076041 0.333901 0.150903 0.439156 0.093376 0.526578 0.180529 0.199517 0.010827 0.880320 0.034150 0.074703 0.016546 0.023834 0.000940 0.958680 0.007166 0.008215 0.001941 0.982678 0.029634 0.001363 0.001379 0.967625 0.010872 0.031751 0.926186 0.031190 0.949407 0.000760 0.002581 0.047253 0.109203 0.001362 0.002094 0.887341 0.044198 0.567994 0.353059 0.034749 0.222623 0.142360 0.041281 0.593736 0.358872 0.167597 0.220534 0.252997 0.233072 0.141480 0.230985 0.394463 0.350703 0.243129 0.233961 0.172207 Consensus sequence: DDDYCCTTTGATSTDDV Reverse complement motif 0.172207 0.243129 0.233961 0.350703 0.394463 0.141480 0.230985 0.233072 0.252997 0.167597 0.220534 0.358872 0.593736 0.142360 0.041281 0.222623 0.044198 0.353059 0.567994 0.034749 0.887341 0.001362 0.002094 0.109203 0.047253 0.000760 0.002581 0.949407 0.010872 0.926186 0.031751 0.031190 0.967625 0.001363 0.001379 0.029634 0.982678 0.008215 0.001941 0.007166 0.958680 0.023834 0.000940 0.016546 0.010827 0.034150 0.880320 0.074703 0.093376 0.180529 0.526578 0.199517 0.439156 0.333901 0.150903 0.076041 0.346074 0.161120 0.254018 0.238788 0.307665 0.157893 0.258178 0.276264 0.272277 0.187143 0.254855 0.285725 Consensus sequence: BDDASATCAAAGGMDDD Alignment: BDDASATCAAAGGMDDD ------KCAGAG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_secondary Reverse Complement Original Motif Forward 3 6 0.013653 Species: Mus musculus Original motif 0.201522 0.336845 0.183740 0.277892 0.238705 0.354378 0.165332 0.241585 0.350858 0.031427 0.308482 0.309233 0.104423 0.870794 0.018676 0.006107 0.313246 0.259944 0.277570 0.149241 0.003590 0.973377 0.002520 0.020513 0.899716 0.025489 0.015458 0.059336 0.049224 0.006415 0.938214 0.006147 0.002021 0.859631 0.007903 0.130445 0.772818 0.002659 0.187334 0.037190 0.008456 0.015170 0.594695 0.381679 0.004118 0.009188 0.961506 0.025188 0.367151 0.230955 0.204475 0.197419 0.267508 0.193660 0.430070 0.108762 0.444449 0.099127 0.212182 0.244241 Consensus sequence: HHDCVCAGCAKGVVD Reverse complement motif 0.244241 0.099127 0.212182 0.444449 0.267508 0.430070 0.193660 0.108762 0.197419 0.230955 0.204475 0.367151 0.004118 0.961506 0.009188 0.025188 0.008456 0.594695 0.015170 0.381679 0.037190 0.002659 0.187334 0.772818 0.002021 0.007903 0.859631 0.130445 0.049224 0.938214 0.006415 0.006147 0.059336 0.025489 0.015458 0.899716 0.003590 0.002520 0.973377 0.020513 0.149241 0.259944 0.277570 0.313246 0.104423 0.018676 0.870794 0.006107 0.309233 0.031427 0.308482 0.350858 0.238705 0.165332 0.354378 0.241585 0.201522 0.183740 0.336845 0.277892 Consensus sequence: DVBCYTGCTGBGDDD Alignment: HHDCVCAGCAKGVVD --KCAGAG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 21 Motif name: Motif 21 Original motif 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.165712 0.000000 0.397480 0.436808 0.000000 0.000000 0.000000 1.000000 0.436426 0.563574 0.000000 0.000000 Consensus sequence: ATKTM Reserve complement motif 0.436426 0.000000 0.563574 0.000000 1.000000 0.000000 0.000000 0.000000 0.436808 0.000000 0.397480 0.165712 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: RARAT ************************************************************************ Best Matches for Motif ID 21 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00080 Gata5_secondary Reverse Complement Original Motif Backward 9 5 0.000000 Species: Mus musculus Original motif 0.296956 0.225759 0.366964 0.110320 0.363955 0.287909 0.178199 0.169937 0.167366 0.353513 0.235266 0.243855 0.362045 0.255289 0.159993 0.222674 0.280070 0.083717 0.491243 0.144971 0.856104 0.068327 0.034504 0.041065 0.063256 0.017187 0.849623 0.069934 0.916053 0.035900 0.039485 0.008562 0.025896 0.011964 0.054314 0.907826 0.827706 0.129092 0.013351 0.029850 0.048301 0.029514 0.118868 0.803318 0.069245 0.824881 0.022797 0.083077 0.508319 0.034384 0.109239 0.348058 0.228736 0.146771 0.436716 0.187777 0.183599 0.289339 0.157455 0.369607 0.174967 0.268426 0.275078 0.281528 0.136843 0.155950 0.346111 0.361096 Consensus sequence: VVBHRAGATATCWDHBB Reverse complement motif 0.361096 0.155950 0.346111 0.136843 0.281528 0.268426 0.275078 0.174967 0.369607 0.289339 0.157455 0.183599 0.228736 0.436716 0.146771 0.187777 0.348058 0.034384 0.109239 0.508319 0.069245 0.022797 0.824881 0.083077 0.803318 0.029514 0.118868 0.048301 0.029850 0.129092 0.013351 0.827706 0.907826 0.011964 0.054314 0.025896 0.008562 0.035900 0.039485 0.916053 0.063256 0.849623 0.017187 0.069934 0.041065 0.068327 0.034504 0.856104 0.280070 0.491243 0.083717 0.144971 0.222674 0.255289 0.159993 0.362045 0.167366 0.235266 0.353513 0.243855 0.169937 0.287909 0.178199 0.363955 0.296956 0.366964 0.225759 0.110320 Consensus sequence: VVHHWGATATCTMHBBV Alignment: VVBHRAGATATCWDHBB ----RARAT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00148 Hdx Reverse Complement Original Motif Backward 8 5 0.002795 Species: Mus musculus Original motif 0.311640 0.203273 0.213311 0.271776 0.341055 0.177799 0.257310 0.223836 0.047573 0.089551 0.516163 0.346713 0.195776 0.119326 0.352322 0.332576 0.295379 0.306027 0.157574 0.241020 0.213770 0.018770 0.724927 0.042533 0.702123 0.228608 0.050137 0.019133 0.826735 0.011735 0.061646 0.099884 0.920071 0.005458 0.026253 0.048218 0.018655 0.024240 0.028915 0.928190 0.029929 0.896758 0.043300 0.030013 0.864548 0.044943 0.013744 0.076766 0.177175 0.216931 0.155519 0.450375 0.228403 0.325164 0.203649 0.242785 0.140135 0.298665 0.306153 0.255047 0.338324 0.345500 0.057864 0.258313 0.402538 0.228867 0.191777 0.176818 Consensus sequence: DDKDHGAAATCAHHBHV Reverse complement motif 0.176818 0.228867 0.191777 0.402538 0.338324 0.057864 0.345500 0.258313 0.140135 0.306153 0.298665 0.255047 0.228403 0.203649 0.325164 0.242785 0.450375 0.216931 0.155519 0.177175 0.076766 0.044943 0.013744 0.864548 0.029929 0.043300 0.896758 0.030013 0.928190 0.024240 0.028915 0.018655 0.048218 0.005458 0.026253 0.920071 0.099884 0.011735 0.061646 0.826735 0.019133 0.228608 0.050137 0.702123 0.213770 0.724927 0.018770 0.042533 0.295379 0.157574 0.306027 0.241020 0.195776 0.352322 0.119326 0.332576 0.047573 0.516163 0.089551 0.346713 0.223836 0.177799 0.257310 0.341055 0.271776 0.203273 0.213311 0.311640 Consensus sequence: BDBDHTGATTTCDHYDD Alignment: DDKDHGAAATCAHHBHV -----RARAT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Reverse Complement Original Motif Backward 12 5 0.009677 Species: Mus musculus Original motif 0.151572 0.262753 0.258275 0.327401 0.221834 0.113385 0.275380 0.389400 0.297769 0.136928 0.134678 0.430625 0.270099 0.110415 0.271106 0.348380 0.265471 0.090253 0.223340 0.420936 0.616582 0.090091 0.171960 0.121367 0.197318 0.107541 0.406904 0.288237 0.798258 0.046950 0.001406 0.153385 0.003195 0.002516 0.989707 0.004582 0.991503 0.002748 0.002617 0.003132 0.005015 0.002764 0.003026 0.989195 0.948394 0.008932 0.001344 0.041330 0.973109 0.004100 0.004081 0.018710 0.040365 0.113905 0.828185 0.017545 0.736608 0.130524 0.113464 0.019404 0.415921 0.106101 0.316613 0.161365 0.376582 0.170927 0.155572 0.296919 0.137731 0.197151 0.211055 0.454064 0.324853 0.122747 0.246107 0.306293 0.462490 0.207311 0.159392 0.170807 0.380420 0.188972 0.311990 0.118618 0.222178 0.157873 0.380486 0.239463 Consensus sequence: BDHDDADAGATAAGADHBDHVD Reverse complement motif 0.222178 0.380486 0.157873 0.239463 0.118618 0.188972 0.311990 0.380420 0.170807 0.207311 0.159392 0.462490 0.306293 0.122747 0.246107 0.324853 0.454064 0.197151 0.211055 0.137731 0.296919 0.170927 0.155572 0.376582 0.161365 0.106101 0.316613 0.415921 0.019404 0.130524 0.113464 0.736608 0.040365 0.828185 0.113905 0.017545 0.018710 0.004100 0.004081 0.973109 0.041330 0.008932 0.001344 0.948394 0.989195 0.002764 0.003026 0.005015 0.003132 0.002748 0.002617 0.991503 0.003195 0.989707 0.002516 0.004582 0.153385 0.046950 0.001406 0.798258 0.197318 0.406904 0.107541 0.288237 0.121367 0.090091 0.171960 0.616582 0.420936 0.090253 0.223340 0.265471 0.348380 0.110415 0.271106 0.270099 0.430625 0.136928 0.134678 0.297769 0.389400 0.113385 0.275380 0.221834 0.327401 0.262753 0.258275 0.151572 Consensus sequence: HBHDVHDTCTTATCTHTDDHDV Alignment: BDHDDADAGATAAGADHBDHVD ------RARAT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00250 Irx5 Original Motif Original Motif Backward 6 5 0.011657 Species: Mus musculus Original motif 0.367463 0.110357 0.154650 0.367530 0.435675 0.104106 0.185653 0.274566 0.309411 0.166534 0.199426 0.324629 0.330171 0.218393 0.207727 0.243708 0.326575 0.006155 0.067531 0.599738 0.934344 0.018417 0.011430 0.035810 0.004941 0.961788 0.005465 0.027806 0.940152 0.001107 0.011177 0.047564 0.047564 0.011177 0.001107 0.940152 0.027806 0.005465 0.961788 0.004941 0.035810 0.011430 0.018417 0.934344 0.599738 0.067531 0.006155 0.326575 0.348557 0.239288 0.195868 0.216288 0.376605 0.112652 0.210787 0.299957 0.540552 0.074408 0.115847 0.269192 0.210439 0.212707 0.245294 0.331559 0.303891 0.113735 0.133741 0.448633 Consensus sequence: DDDHWACATGTWHDABW Reverse complement motif 0.448633 0.113735 0.133741 0.303891 0.331559 0.212707 0.245294 0.210439 0.269192 0.074408 0.115847 0.540552 0.299957 0.112652 0.210787 0.376605 0.216288 0.239288 0.195868 0.348557 0.326575 0.067531 0.006155 0.599738 0.934344 0.011430 0.018417 0.035810 0.027806 0.961788 0.005465 0.004941 0.940152 0.011177 0.001107 0.047564 0.047564 0.001107 0.011177 0.940152 0.004941 0.005465 0.961788 0.027806 0.035810 0.018417 0.011430 0.934344 0.599738 0.006155 0.067531 0.326575 0.243708 0.218393 0.207727 0.330171 0.324629 0.166534 0.199426 0.309411 0.274566 0.104106 0.185653 0.435675 0.367530 0.110357 0.154650 0.367463 Consensus sequence: WVTDHWACATGTWHDDD Alignment: DDDHWACATGTWHDABW -------ATKTM----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00236 Irx2 Original Motif Original Motif Backward 6 5 0.012020 Species: Mus musculus Original motif 0.394106 0.081399 0.100827 0.423668 0.466343 0.126236 0.130788 0.276633 0.319347 0.127772 0.257087 0.295794 0.406891 0.139766 0.252855 0.200488 0.219982 0.007245 0.029337 0.743436 0.947280 0.014984 0.012651 0.025086 0.003955 0.974386 0.007466 0.014192 0.956452 0.001229 0.011361 0.030959 0.030959 0.011361 0.001229 0.956452 0.014192 0.007466 0.974386 0.003955 0.025086 0.012651 0.014984 0.947280 0.743436 0.029337 0.007245 0.219982 0.404816 0.174236 0.206626 0.214322 0.295979 0.194049 0.285864 0.224108 0.399608 0.106063 0.123706 0.370623 0.176973 0.196462 0.269004 0.357560 0.339978 0.107593 0.083682 0.468747 Consensus sequence: WDDDTACATGTADDWBW Reverse complement motif 0.468747 0.107593 0.083682 0.339978 0.357560 0.196462 0.269004 0.176973 0.370623 0.106063 0.123706 0.399608 0.224108 0.194049 0.285864 0.295979 0.214322 0.174236 0.206626 0.404816 0.219982 0.029337 0.007245 0.743436 0.947280 0.012651 0.014984 0.025086 0.014192 0.974386 0.007466 0.003955 0.956452 0.011361 0.001229 0.030959 0.030959 0.001229 0.011361 0.956452 0.003955 0.007466 0.974386 0.014192 0.025086 0.014984 0.012651 0.947280 0.743436 0.007245 0.029337 0.219982 0.200488 0.139766 0.252855 0.406891 0.295794 0.127772 0.257087 0.319347 0.276633 0.126236 0.130788 0.466343 0.423668 0.081399 0.100827 0.394106 Consensus sequence: WVWDDTACATGTADDDW Alignment: WDDDTACATGTADDWBW -------ATKTM----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00150 Irx6 Original Motif Original Motif Forward 8 5 0.012060 Species: Mus musculus Original motif 0.356323 0.182245 0.120162 0.341271 0.540549 0.133347 0.119342 0.206762 0.401575 0.161837 0.116292 0.320296 0.311151 0.164568 0.283941 0.240340 0.198376 0.006596 0.030801 0.764227 0.947120 0.014182 0.010382 0.028316 0.006934 0.957983 0.007710 0.027373 0.947314 0.001874 0.016190 0.034622 0.034622 0.016190 0.001874 0.947314 0.027373 0.007710 0.957983 0.006934 0.028316 0.010382 0.014182 0.947120 0.764227 0.030801 0.006596 0.198376 0.372950 0.265937 0.182203 0.178910 0.399793 0.101871 0.214477 0.283859 0.478414 0.110202 0.114534 0.296850 0.317990 0.215498 0.212041 0.254471 0.131398 0.063397 0.070049 0.735156 Consensus sequence: HAHDTACATGTAVDWHT Reverse complement motif 0.735156 0.063397 0.070049 0.131398 0.254471 0.215498 0.212041 0.317990 0.296850 0.110202 0.114534 0.478414 0.283859 0.101871 0.214477 0.399793 0.178910 0.265937 0.182203 0.372950 0.198376 0.030801 0.006596 0.764227 0.947120 0.010382 0.014182 0.028316 0.027373 0.957983 0.007710 0.006934 0.947314 0.016190 0.001874 0.034622 0.034622 0.001874 0.016190 0.947314 0.006934 0.007710 0.957983 0.027373 0.028316 0.014182 0.010382 0.947120 0.764227 0.006596 0.030801 0.198376 0.240340 0.164568 0.283941 0.311151 0.320296 0.161837 0.116292 0.401575 0.206762 0.133347 0.119342 0.540549 0.341271 0.182245 0.120162 0.356323 Consensus sequence: AHWDBTACATGTADHTH Alignment: HAHDTACATGTAVDWHT -------ATKTM----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00223 Irx3_2226.1 Original Motif Original Motif Forward 8 5 0.012488 Species: Mus musculus Original motif 0.402654 0.107068 0.157939 0.332339 0.381229 0.129621 0.243277 0.245872 0.271699 0.148903 0.261472 0.317925 0.278393 0.239730 0.235045 0.246831 0.223980 0.006073 0.031227 0.738720 0.952925 0.013731 0.008900 0.024444 0.005380 0.972117 0.004335 0.018169 0.945295 0.001062 0.011429 0.042214 0.042214 0.011429 0.001062 0.945295 0.018169 0.004335 0.972117 0.005380 0.024444 0.008900 0.013731 0.952925 0.738720 0.031227 0.006073 0.223980 0.449438 0.199271 0.196335 0.154956 0.266542 0.085070 0.155050 0.493338 0.412619 0.114771 0.151818 0.320792 0.175351 0.270485 0.162372 0.391791 0.355721 0.130415 0.156633 0.357231 Consensus sequence: DDDHTACATGTAVWDHD Reverse complement motif 0.357231 0.130415 0.156633 0.355721 0.391791 0.270485 0.162372 0.175351 0.320792 0.114771 0.151818 0.412619 0.493338 0.085070 0.155050 0.266542 0.154956 0.199271 0.196335 0.449438 0.223980 0.031227 0.006073 0.738720 0.952925 0.008900 0.013731 0.024444 0.018169 0.972117 0.004335 0.005380 0.945295 0.011429 0.001062 0.042214 0.042214 0.001062 0.011429 0.945295 0.005380 0.004335 0.972117 0.018169 0.024444 0.013731 0.008900 0.952925 0.738720 0.006073 0.031227 0.223980 0.246831 0.239730 0.235045 0.278393 0.317925 0.148903 0.261472 0.271699 0.245872 0.129621 0.243277 0.381229 0.332339 0.107068 0.157939 0.402654 Consensus sequence: DHDWBTACATGTAHDDD Alignment: DDDHTACATGTAVWDHD -------ATKTM----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_primary Original Motif Original Motif Forward 10 5 0.015004 Species: Mus musculus Original motif 0.302837 0.133017 0.249940 0.314205 0.378542 0.186425 0.250700 0.184332 0.184780 0.144329 0.262766 0.408125 0.308569 0.039689 0.235695 0.416047 0.817738 0.108938 0.033419 0.039905 0.018996 0.007718 0.013175 0.960112 0.009278 0.002422 0.973921 0.014379 0.005587 0.002693 0.985088 0.006633 0.005874 0.004232 0.976927 0.012967 0.951309 0.011835 0.023187 0.013669 0.005927 0.004521 0.005701 0.983851 0.146443 0.003009 0.840720 0.009829 0.002553 0.044504 0.542059 0.410884 0.406299 0.375782 0.133922 0.083997 0.256884 0.160184 0.271190 0.311742 0.388381 0.141811 0.214600 0.255208 0.340877 0.274387 0.205585 0.179151 Consensus sequence: DVDDATGGGATGKMDDV Reverse complement motif 0.179151 0.274387 0.205585 0.340877 0.255208 0.141811 0.214600 0.388381 0.311742 0.160184 0.271190 0.256884 0.083997 0.375782 0.133922 0.406299 0.002553 0.542059 0.044504 0.410884 0.146443 0.840720 0.003009 0.009829 0.983851 0.004521 0.005701 0.005927 0.013669 0.011835 0.023187 0.951309 0.005874 0.976927 0.004232 0.012967 0.005587 0.985088 0.002693 0.006633 0.009278 0.973921 0.002422 0.014379 0.960112 0.007718 0.013175 0.018996 0.039905 0.108938 0.033419 0.817738 0.416047 0.039689 0.235695 0.308569 0.408125 0.144329 0.262766 0.184780 0.184332 0.186425 0.250700 0.378542 0.314205 0.133017 0.249940 0.302837 Consensus sequence: BDDYYCATCCCATDDBD Alignment: DVDDATGGGATGKMDDV ---------ATKTM--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00223 Irx3_0920.1 Original Motif Original Motif Backward 6 5 0.015019 Species: Mus musculus Original motif 0.369314 0.086226 0.205101 0.339359 0.332302 0.160101 0.284255 0.223343 0.291107 0.190306 0.229518 0.289068 0.295366 0.218346 0.264868 0.221420 0.224029 0.007037 0.047157 0.721777 0.935123 0.014036 0.014073 0.036768 0.004474 0.977496 0.005620 0.012411 0.924256 0.001181 0.015903 0.058661 0.058661 0.015903 0.001181 0.924256 0.012411 0.005620 0.977496 0.004474 0.036768 0.014073 0.014036 0.935123 0.721777 0.047157 0.007037 0.224029 0.449320 0.226936 0.166094 0.157650 0.313283 0.070145 0.179424 0.437148 0.522855 0.074913 0.105873 0.296358 0.185897 0.387406 0.129138 0.297559 0.276853 0.127952 0.189255 0.405940 Consensus sequence: DDDDTACATGTAVWWHD Reverse complement motif 0.405940 0.127952 0.189255 0.276853 0.185897 0.129138 0.387406 0.297559 0.296358 0.074913 0.105873 0.522855 0.437148 0.070145 0.179424 0.313283 0.157650 0.226936 0.166094 0.449320 0.224029 0.047157 0.007037 0.721777 0.935123 0.014073 0.014036 0.036768 0.012411 0.977496 0.005620 0.004474 0.924256 0.015903 0.001181 0.058661 0.058661 0.001181 0.015903 0.924256 0.004474 0.005620 0.977496 0.012411 0.036768 0.014036 0.014073 0.935123 0.721777 0.007037 0.047157 0.224029 0.221420 0.218346 0.264868 0.295366 0.289068 0.190306 0.229518 0.291107 0.223343 0.160101 0.284255 0.332302 0.339359 0.086226 0.205101 0.369314 Consensus sequence: DDWWBTACATGTADDDD Alignment: DDDDTACATGTAVWWHD -------ATKTM----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Reverse Complement Original Motif Backward 12 5 0.016608 Species: Mus musculus Original motif 0.399785 0.446658 0.111435 0.042122 0.535175 0.103991 0.089706 0.271128 0.078171 0.387987 0.375083 0.158759 0.309001 0.519142 0.070618 0.101239 0.201844 0.255818 0.323149 0.219190 0.534101 0.109845 0.235026 0.121028 0.656038 0.037473 0.261484 0.045006 0.315713 0.164290 0.471815 0.048182 0.651960 0.009412 0.328237 0.010391 0.937365 0.017313 0.007516 0.037807 0.019983 0.044238 0.012387 0.923392 0.061195 0.021485 0.881645 0.035675 0.017521 0.952998 0.013139 0.016342 0.254160 0.029735 0.493023 0.223082 0.239200 0.593324 0.114503 0.052973 0.610822 0.071539 0.099169 0.218470 0.166610 0.389712 0.204400 0.239278 0.227752 0.361626 0.178497 0.232125 0.537030 0.182466 0.026035 0.254470 0.235902 0.151006 0.043788 0.569304 0.081851 0.250397 0.590059 0.077693 0.340417 0.189613 0.272075 0.197895 Consensus sequence: MWSMBAARRATGCDCABHATGD Reverse complement motif 0.197895 0.189613 0.272075 0.340417 0.081851 0.590059 0.250397 0.077693 0.569304 0.151006 0.043788 0.235902 0.254470 0.182466 0.026035 0.537030 0.227752 0.178497 0.361626 0.232125 0.166610 0.204400 0.389712 0.239278 0.218470 0.071539 0.099169 0.610822 0.239200 0.114503 0.593324 0.052973 0.254160 0.493023 0.029735 0.223082 0.017521 0.013139 0.952998 0.016342 0.061195 0.881645 0.021485 0.035675 0.923392 0.044238 0.012387 0.019983 0.037807 0.017313 0.007516 0.937365 0.010391 0.009412 0.328237 0.651960 0.315713 0.471815 0.164290 0.048182 0.045006 0.037473 0.261484 0.656038 0.121028 0.109845 0.235026 0.534101 0.201844 0.323149 0.255818 0.219190 0.309001 0.070618 0.519142 0.101239 0.078171 0.375083 0.387987 0.158759 0.271128 0.103991 0.089706 0.535175 0.399785 0.111435 0.446658 0.042122 Consensus sequence: DCATDBTGHGCATKMTTBRSWR Alignment: MWSMBAARRATGCDCABHATGD ------RARAT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 22 Motif name: Motif 22 Original motif 0.000000 1.000000 0.000000 0.000000 0.594366 0.405634 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.636620 0.000000 0.363380 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 Consensus sequence: CMGCRGC Reserve complement motif 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.363380 0.636620 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.405634 0.000000 0.594366 0.000000 0.000000 1.000000 0.000000 Consensus sequence: GCKGCYG ************************************************************************ Best Matches for Motif ID 22 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00052 Osr2_primary Reverse Complement Reverse Complement Forward 5 7 0.000000 Species: Mus musculus Original motif 0.295210 0.230759 0.178832 0.295199 0.286163 0.186772 0.186150 0.340915 0.287577 0.235045 0.329453 0.147924 0.263264 0.191325 0.081978 0.463433 0.839420 0.118123 0.018788 0.023669 0.005488 0.984397 0.000830 0.009284 0.660134 0.001532 0.336574 0.001760 0.003020 0.001773 0.993144 0.002063 0.039664 0.001060 0.005054 0.954222 0.980339 0.000636 0.016776 0.002249 0.003849 0.001418 0.992166 0.002568 0.000858 0.950172 0.007228 0.041743 0.342840 0.230712 0.133570 0.292878 0.342486 0.316980 0.167294 0.173240 0.362426 0.178913 0.146709 0.311952 0.266586 0.140406 0.435643 0.157365 Consensus sequence: HHVHACRGTAGCHHHD Reverse complement motif 0.266586 0.435643 0.140406 0.157365 0.311952 0.178913 0.146709 0.362426 0.173240 0.316980 0.167294 0.342486 0.292878 0.230712 0.133570 0.342840 0.000858 0.007228 0.950172 0.041743 0.003849 0.992166 0.001418 0.002568 0.002249 0.000636 0.016776 0.980339 0.954222 0.001060 0.005054 0.039664 0.003020 0.993144 0.001773 0.002063 0.001760 0.001532 0.336574 0.660134 0.005488 0.000830 0.984397 0.009284 0.023669 0.118123 0.018788 0.839420 0.463433 0.191325 0.081978 0.263264 0.287577 0.329453 0.235045 0.147924 0.340915 0.186772 0.186150 0.286163 0.295199 0.230759 0.178832 0.295210 Consensus sequence: HHHHGCTACKGTHVHH Alignment: HHHHGCTACKGTHVHH ----GCKGCYG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00027 Osr1_primary Reverse Complement Reverse Complement Backward 6 7 0.001081 Species: Mus musculus Original motif 0.260366 0.252887 0.224273 0.262474 0.239931 0.233883 0.190643 0.335543 0.257637 0.188706 0.242480 0.311177 0.323833 0.165978 0.161144 0.349046 0.824983 0.119267 0.027014 0.028736 0.009055 0.974108 0.000889 0.015947 0.659219 0.001516 0.337361 0.001905 0.002965 0.001643 0.993070 0.002321 0.047380 0.001758 0.009593 0.941269 0.974073 0.000741 0.023187 0.001999 0.006256 0.001341 0.990114 0.002290 0.001372 0.921382 0.010719 0.066527 0.449788 0.160658 0.105504 0.284050 0.392727 0.304490 0.187448 0.115335 0.361758 0.209213 0.175805 0.253224 0.420972 0.108912 0.289406 0.180710 Consensus sequence: HHDHACRGTAGCHVHD Reverse complement motif 0.180710 0.108912 0.289406 0.420972 0.253224 0.209213 0.175805 0.361758 0.115335 0.304490 0.187448 0.392727 0.284050 0.160658 0.105504 0.449788 0.001372 0.010719 0.921382 0.066527 0.006256 0.990114 0.001341 0.002290 0.001999 0.000741 0.023187 0.974073 0.941269 0.001758 0.009593 0.047380 0.002965 0.993070 0.001643 0.002321 0.001905 0.001516 0.337361 0.659219 0.009055 0.000889 0.974108 0.015947 0.028736 0.119267 0.027014 0.824983 0.349046 0.165978 0.161144 0.323833 0.311177 0.188706 0.242480 0.257637 0.335543 0.233883 0.190643 0.239931 0.262474 0.252887 0.224273 0.260366 Consensus sequence: DHBHGCTACKGTHDHH Alignment: DHBHGCTACKGTHDHH ----GCKGCYG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_primary Reverse Complement Original Motif Forward 8 7 0.009055 Species: Mus musculus Original motif 0.168852 0.325948 0.188604 0.316596 0.150343 0.193286 0.241301 0.415069 0.091518 0.482905 0.122928 0.302648 0.472493 0.198776 0.225796 0.102935 0.294513 0.179919 0.447250 0.078318 0.014660 0.972080 0.005591 0.007668 0.954848 0.008107 0.008474 0.028571 0.006076 0.178912 0.760021 0.054991 0.052082 0.817415 0.124797 0.005707 0.019342 0.010406 0.008905 0.961347 0.005455 0.008073 0.977684 0.008788 0.042946 0.715551 0.087020 0.154483 0.116888 0.241739 0.170073 0.471300 0.315931 0.324343 0.291451 0.068274 0.199164 0.366921 0.163690 0.270226 0.218561 0.211076 0.187732 0.382631 0.145317 0.139808 0.389262 0.325614 Consensus sequence: BBYVVCAGCTGCBVHHD Reverse complement motif 0.145317 0.389262 0.139808 0.325614 0.382631 0.211076 0.187732 0.218561 0.199164 0.163690 0.366921 0.270226 0.315931 0.291451 0.324343 0.068274 0.471300 0.241739 0.170073 0.116888 0.042946 0.087020 0.715551 0.154483 0.005455 0.977684 0.008073 0.008788 0.961347 0.010406 0.008905 0.019342 0.052082 0.124797 0.817415 0.005707 0.006076 0.760021 0.178912 0.054991 0.028571 0.008107 0.008474 0.954848 0.014660 0.005591 0.972080 0.007668 0.294513 0.447250 0.179919 0.078318 0.102935 0.198776 0.225796 0.472493 0.091518 0.122928 0.482905 0.302648 0.415069 0.193286 0.241301 0.150343 0.168852 0.188604 0.325948 0.316596 Consensus sequence: HHDVVGCAGCTGVBKVB Alignment: BBYVVCAGCTGCBVHHD -------GCKGCYG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00102 Zic1_secondary Original Motif Original Motif Backward 4 7 0.011106 Species: Mus musculus Original motif 0.161683 0.405114 0.171743 0.261460 0.259478 0.357988 0.146793 0.235741 0.371334 0.026439 0.283598 0.318630 0.092229 0.883389 0.018758 0.005623 0.419591 0.169874 0.253266 0.157270 0.002985 0.976375 0.002722 0.017918 0.909381 0.021357 0.013299 0.055963 0.039418 0.007014 0.948302 0.005266 0.001711 0.845894 0.005756 0.146640 0.803792 0.003049 0.148687 0.044472 0.015314 0.017153 0.680239 0.287294 0.003793 0.011414 0.937403 0.047390 0.431916 0.266291 0.144154 0.157638 0.269331 0.239338 0.366817 0.124513 0.395873 0.103980 0.214796 0.285351 Consensus sequence: BHDCVCAGCAGGHVD Reverse complement motif 0.285351 0.103980 0.214796 0.395873 0.269331 0.366817 0.239338 0.124513 0.157638 0.266291 0.144154 0.431916 0.003793 0.937403 0.011414 0.047390 0.015314 0.680239 0.017153 0.287294 0.044472 0.003049 0.148687 0.803792 0.001711 0.005756 0.845894 0.146640 0.039418 0.948302 0.007014 0.005266 0.055963 0.021357 0.013299 0.909381 0.002985 0.002722 0.976375 0.017918 0.157270 0.169874 0.253266 0.419591 0.092229 0.018758 0.883389 0.005623 0.318630 0.026439 0.283598 0.371334 0.259478 0.146793 0.357988 0.235741 0.161683 0.171743 0.405114 0.261460 Consensus sequence: DVHCCTGCTGBGDDB Alignment: BHDCVCAGCAGGHVD -----CMGCRGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_secondary Original Motif Original Motif Forward 6 7 0.012690 Species: Mus musculus Original motif 0.201522 0.336845 0.183740 0.277892 0.238705 0.354378 0.165332 0.241585 0.350858 0.031427 0.308482 0.309233 0.104423 0.870794 0.018676 0.006107 0.313246 0.259944 0.277570 0.149241 0.003590 0.973377 0.002520 0.020513 0.899716 0.025489 0.015458 0.059336 0.049224 0.006415 0.938214 0.006147 0.002021 0.859631 0.007903 0.130445 0.772818 0.002659 0.187334 0.037190 0.008456 0.015170 0.594695 0.381679 0.004118 0.009188 0.961506 0.025188 0.367151 0.230955 0.204475 0.197419 0.267508 0.193660 0.430070 0.108762 0.444449 0.099127 0.212182 0.244241 Consensus sequence: HHDCVCAGCAKGVVD Reverse complement motif 0.244241 0.099127 0.212182 0.444449 0.267508 0.430070 0.193660 0.108762 0.197419 0.230955 0.204475 0.367151 0.004118 0.961506 0.009188 0.025188 0.008456 0.594695 0.015170 0.381679 0.037190 0.002659 0.187334 0.772818 0.002021 0.007903 0.859631 0.130445 0.049224 0.938214 0.006415 0.006147 0.059336 0.025489 0.015458 0.899716 0.003590 0.002520 0.973377 0.020513 0.149241 0.259944 0.277570 0.313246 0.104423 0.018676 0.870794 0.006107 0.309233 0.031427 0.308482 0.350858 0.238705 0.165332 0.354378 0.241585 0.201522 0.183740 0.336845 0.277892 Consensus sequence: DVBCYTGCTGBGDDD Alignment: HHDCVCAGCAKGVVD -----CMGCRGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00006 Zic3_secondary Reverse Complement Reverse Complement Backward 6 7 0.013740 Species: Mus musculus Original motif 0.225537 0.223459 0.280507 0.270498 0.332396 0.181810 0.207290 0.278505 0.309873 0.017922 0.386135 0.286070 0.101947 0.871607 0.020267 0.006179 0.541366 0.089100 0.242170 0.127364 0.003307 0.969997 0.002414 0.024283 0.903286 0.021590 0.015872 0.059253 0.039887 0.009732 0.945083 0.005298 0.001704 0.827209 0.006276 0.164810 0.723052 0.003102 0.221051 0.052795 0.011758 0.024398 0.560633 0.403211 0.003656 0.012952 0.939586 0.043807 0.477846 0.270399 0.113113 0.138642 0.225706 0.298505 0.258523 0.217266 0.365251 0.191780 0.197411 0.245557 Consensus sequence: DDDCACAGCAKGHVD Reverse complement motif 0.245557 0.191780 0.197411 0.365251 0.225706 0.258523 0.298505 0.217266 0.138642 0.270399 0.113113 0.477846 0.003656 0.939586 0.012952 0.043807 0.011758 0.560633 0.024398 0.403211 0.052795 0.003102 0.221051 0.723052 0.001704 0.006276 0.827209 0.164810 0.039887 0.945083 0.009732 0.005298 0.059253 0.021590 0.015872 0.903286 0.003307 0.002414 0.969997 0.024283 0.127364 0.089100 0.242170 0.541366 0.101947 0.020267 0.871607 0.006179 0.309873 0.386135 0.017922 0.286070 0.278505 0.181810 0.207290 0.332396 0.225537 0.280507 0.223459 0.270498 Consensus sequence: DVHCYTGCTGTGHDH Alignment: DVHCYTGCTGTGHDH ---GCKGCYG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00045 Mafb_primary Original Motif Reverse Complement Backward 4 7 0.025308 Species: Mus musculus Original motif 0.420301 0.182299 0.161481 0.235919 0.593201 0.055751 0.202477 0.148571 0.653364 0.017008 0.054630 0.274998 0.339176 0.102943 0.050258 0.507622 0.171557 0.078698 0.267471 0.482273 0.044703 0.033212 0.003920 0.918165 0.010333 0.004451 0.972441 0.012775 0.034026 0.949298 0.004788 0.011889 0.016078 0.008878 0.004007 0.971037 0.020331 0.004077 0.929676 0.045916 0.975739 0.007450 0.005991 0.010819 0.012733 0.887375 0.018700 0.081192 0.259981 0.111885 0.243051 0.385083 0.327677 0.149969 0.094895 0.427459 0.541721 0.105923 0.242224 0.110132 0.258689 0.068305 0.493226 0.179779 0.306041 0.306854 0.168308 0.218798 Consensus sequence: HAAWDTGCTGACDWARH Reverse complement motif 0.306041 0.168308 0.306854 0.218798 0.258689 0.493226 0.068305 0.179779 0.110132 0.105923 0.242224 0.541721 0.427459 0.149969 0.094895 0.327677 0.385083 0.111885 0.243051 0.259981 0.012733 0.018700 0.887375 0.081192 0.010819 0.007450 0.005991 0.975739 0.020331 0.929676 0.004077 0.045916 0.971037 0.008878 0.004007 0.016078 0.034026 0.004788 0.949298 0.011889 0.010333 0.972441 0.004451 0.012775 0.918165 0.033212 0.003920 0.044703 0.482273 0.078698 0.267471 0.171557 0.507622 0.102943 0.050258 0.339176 0.274998 0.017008 0.054630 0.653364 0.148571 0.055751 0.202477 0.593201 0.235919 0.182299 0.161481 0.420301 Consensus sequence: DMTWDGTCAGCADWTTH Alignment: DMTWDGTCAGCADWTTH -------CMGCRGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00193 Rhox11_1765.2 Original Motif Reverse Complement Forward 9 7 0.029267 Species: Mus musculus Original motif 0.538735 0.129821 0.147336 0.184107 0.331267 0.275123 0.227609 0.166001 0.174654 0.113319 0.383610 0.328417 0.296734 0.281670 0.230068 0.191527 0.128222 0.561296 0.062928 0.247554 0.027028 0.014676 0.949335 0.008962 0.087209 0.761581 0.147964 0.003246 0.006796 0.000741 0.006037 0.986427 0.039496 0.000533 0.943453 0.016517 0.005541 0.005164 0.002805 0.986489 0.561957 0.002761 0.004207 0.431075 0.780197 0.037155 0.031222 0.151425 0.518642 0.104220 0.012670 0.364468 0.314451 0.111366 0.333508 0.240676 0.236936 0.357992 0.280813 0.124259 0.314846 0.163774 0.426195 0.095185 0.408340 0.134111 0.102987 0.354562 Consensus sequence: AVDVCGCTGTWAWDVVW Reverse complement motif 0.354562 0.134111 0.102987 0.408340 0.314846 0.426195 0.163774 0.095185 0.236936 0.280813 0.357992 0.124259 0.314451 0.333508 0.111366 0.240676 0.364468 0.104220 0.012670 0.518642 0.151425 0.037155 0.031222 0.780197 0.431075 0.002761 0.004207 0.561957 0.986489 0.005164 0.002805 0.005541 0.039496 0.943453 0.000533 0.016517 0.986427 0.000741 0.006037 0.006796 0.087209 0.147964 0.761581 0.003246 0.027028 0.949335 0.014676 0.008962 0.128222 0.062928 0.561296 0.247554 0.191527 0.281670 0.230068 0.296734 0.174654 0.383610 0.113319 0.328417 0.166001 0.275123 0.227609 0.331267 0.184107 0.129821 0.147336 0.538735 Consensus sequence: WVVHWTWACAGCGBHBT Alignment: WVVHWTWACAGCGBHBT --------CMGCRGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00193 Rhox11_2205.1 Original Motif Reverse Complement Backward 3 7 0.029808 Species: Mus musculus Original motif 0.504898 0.140204 0.135418 0.219480 0.282348 0.244881 0.300572 0.172199 0.183939 0.100670 0.384783 0.330608 0.326709 0.269523 0.194043 0.209724 0.142989 0.557393 0.066826 0.232792 0.038356 0.014052 0.932450 0.015142 0.092102 0.778844 0.125082 0.003972 0.010254 0.001252 0.005231 0.983263 0.033486 0.000891 0.947486 0.018137 0.005360 0.007407 0.003729 0.983504 0.603485 0.007179 0.003482 0.385853 0.798026 0.029788 0.032370 0.139816 0.529622 0.100632 0.016507 0.353238 0.243581 0.126094 0.401402 0.228923 0.207484 0.285456 0.353715 0.153346 0.282413 0.188410 0.441463 0.087715 0.422774 0.152965 0.094106 0.330155 Consensus sequence: AVDHCGCTGTWAWDVVW Reverse complement motif 0.330155 0.152965 0.094106 0.422774 0.282413 0.441463 0.188410 0.087715 0.207484 0.353715 0.285456 0.153346 0.243581 0.401402 0.126094 0.228923 0.353238 0.100632 0.016507 0.529622 0.139816 0.029788 0.032370 0.798026 0.385853 0.007179 0.003482 0.603485 0.983504 0.007407 0.003729 0.005360 0.033486 0.947486 0.000891 0.018137 0.983263 0.001252 0.005231 0.010254 0.092102 0.125082 0.778844 0.003972 0.038356 0.932450 0.014052 0.015142 0.142989 0.066826 0.557393 0.232792 0.209724 0.269523 0.194043 0.326709 0.183939 0.384783 0.100670 0.330608 0.282348 0.300572 0.244881 0.172199 0.219480 0.140204 0.135418 0.504898 Consensus sequence: WVVHWTWACAGCGHHVT Alignment: WVVHWTWACAGCGHHVT --------CMGCRGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00122 Tgif1 Original Motif Original Motif Backward 3 7 0.033298 Species: Mus musculus Original motif 0.272977 0.158875 0.284742 0.283406 0.550609 0.124110 0.169608 0.155673 0.114568 0.207160 0.282464 0.395807 0.560868 0.052907 0.053508 0.332716 0.336500 0.068048 0.114050 0.481403 0.007736 0.003722 0.000495 0.988048 0.004489 0.000729 0.992211 0.002571 0.956618 0.000414 0.000890 0.042078 0.004381 0.990925 0.000538 0.004156 0.982797 0.000366 0.015539 0.001298 0.016760 0.002980 0.969991 0.010269 0.036013 0.725983 0.200022 0.037982 0.064755 0.104386 0.133891 0.696968 0.199404 0.263520 0.410228 0.126848 0.222648 0.351390 0.272575 0.153387 0.087778 0.206043 0.395671 0.310507 0.319643 0.144216 0.196041 0.340100 Consensus sequence: DABWWTGACAGCTVVBD Reverse complement motif 0.340100 0.144216 0.196041 0.319643 0.087778 0.395671 0.206043 0.310507 0.222648 0.272575 0.351390 0.153387 0.199404 0.410228 0.263520 0.126848 0.696968 0.104386 0.133891 0.064755 0.036013 0.200022 0.725983 0.037982 0.016760 0.969991 0.002980 0.010269 0.001298 0.000366 0.015539 0.982797 0.004381 0.000538 0.990925 0.004156 0.042078 0.000414 0.000890 0.956618 0.004489 0.992211 0.000729 0.002571 0.988048 0.003722 0.000495 0.007736 0.481403 0.068048 0.114050 0.336500 0.332716 0.052907 0.053508 0.560868 0.395807 0.207160 0.282464 0.114568 0.155673 0.124110 0.169608 0.550609 0.272977 0.284742 0.158875 0.283406 Consensus sequence: DBVVAGCTGTCAWWVTH Alignment: DABWWTGACAGCTVVBD --------CMGCRGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 23 Motif name: Motif 23 Original motif 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.474359 0.000000 0.525641 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 Consensus sequence: CCCRCCCC Reserve complement motif 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.474359 0.525641 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: GGGGMGGG ************************************************************************ Best Matches for Motif ID 23 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Reverse Complement Reverse Complement Forward 4 8 0.000000 Species: Mus musculus Original motif 0.204514 0.198353 0.171218 0.425915 0.167188 0.296785 0.246082 0.289946 0.267330 0.148001 0.398674 0.185994 0.549386 0.060167 0.337100 0.053347 0.050746 0.900013 0.022169 0.027073 0.037905 0.920332 0.008360 0.033403 0.410356 0.566702 0.016267 0.006675 0.009526 0.982354 0.001060 0.007060 0.204292 0.001084 0.748567 0.046056 0.003955 0.988490 0.002821 0.004735 0.004264 0.988826 0.004311 0.002598 0.002758 0.929549 0.001244 0.066448 0.260332 0.421683 0.024720 0.293265 0.184798 0.247697 0.085237 0.482268 0.347537 0.197344 0.139961 0.315159 0.255281 0.166620 0.242297 0.335802 Consensus sequence: HBDRCCMCGCCCHHHD Reverse complement motif 0.335802 0.166620 0.242297 0.255281 0.315159 0.197344 0.139961 0.347537 0.482268 0.247697 0.085237 0.184798 0.260332 0.024720 0.421683 0.293265 0.002758 0.001244 0.929549 0.066448 0.004264 0.004311 0.988826 0.002598 0.003955 0.002821 0.988490 0.004735 0.204292 0.748567 0.001084 0.046056 0.009526 0.001060 0.982354 0.007060 0.410356 0.016267 0.566702 0.006675 0.037905 0.008360 0.920332 0.033403 0.050746 0.022169 0.900013 0.027073 0.053347 0.060167 0.337100 0.549386 0.267330 0.398674 0.148001 0.185994 0.167188 0.246082 0.296785 0.289946 0.425915 0.198353 0.171218 0.204514 Consensus sequence: DHHDGGGCGRGGKHBH Alignment: DHHDGGGCGRGGKHBH ---GGGGMGGG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Reverse Complement Reverse Complement Forward 7 8 0.004909 Species: Mus musculus Original motif 0.155386 0.223380 0.374454 0.246780 0.247106 0.159582 0.345111 0.248201 0.238889 0.258354 0.165304 0.337454 0.255612 0.489586 0.051621 0.203182 0.450100 0.545383 0.001071 0.003447 0.003704 0.991007 0.002456 0.002833 0.035504 0.001814 0.928129 0.034553 0.001494 0.991406 0.003414 0.003686 0.003045 0.990628 0.005182 0.001145 0.000990 0.963237 0.001215 0.034557 0.148016 0.838396 0.000666 0.012922 0.014261 0.905847 0.007200 0.072692 0.083394 0.270068 0.058368 0.588170 0.149141 0.286783 0.142802 0.421274 0.204851 0.347195 0.253356 0.194597 0.184442 0.299908 0.194408 0.321242 0.125793 0.380109 0.245318 0.248780 Consensus sequence: BDHHMCGCCCCCTHVBB Reverse complement motif 0.125793 0.245318 0.380109 0.248780 0.321242 0.299908 0.194408 0.184442 0.204851 0.253356 0.347195 0.194597 0.421274 0.286783 0.142802 0.149141 0.588170 0.270068 0.058368 0.083394 0.014261 0.007200 0.905847 0.072692 0.148016 0.000666 0.838396 0.012922 0.000990 0.001215 0.963237 0.034557 0.003045 0.005182 0.990628 0.001145 0.001494 0.003414 0.991406 0.003686 0.035504 0.928129 0.001814 0.034553 0.003704 0.002456 0.991007 0.002833 0.450100 0.001071 0.545383 0.003447 0.255612 0.051621 0.489586 0.203182 0.337454 0.258354 0.165304 0.238889 0.247106 0.345111 0.159582 0.248201 0.155386 0.374454 0.223380 0.246780 Consensus sequence: BVVHAGGGGGCGRDHHB Alignment: BVVHAGGGGGCGRDHHB ------GGGGMGGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Original Motif Original Motif Forward 1 8 0.010144 Species: Mus musculus Original motif 0.211547 0.282708 0.203472 0.302273 0.141988 0.722437 0.054854 0.080721 0.032605 0.877172 0.012432 0.077792 0.115126 0.070606 0.781290 0.032979 0.003516 0.990021 0.002265 0.004198 0.004715 0.982482 0.009897 0.002906 0.001627 0.975937 0.001662 0.020774 0.262352 0.731732 0.002730 0.003187 0.005890 0.985756 0.002081 0.006273 0.022893 0.090460 0.649322 0.237324 0.023038 0.859949 0.037913 0.079101 0.567633 0.057394 0.166792 0.208181 0.176597 0.331265 0.125308 0.366830 0.183049 0.183774 0.226793 0.406384 Consensus sequence: HCCGCCCCCGCAHB Reverse complement motif 0.406384 0.183774 0.226793 0.183049 0.366830 0.331265 0.125308 0.176597 0.208181 0.057394 0.166792 0.567633 0.023038 0.037913 0.859949 0.079101 0.022893 0.649322 0.090460 0.237324 0.005890 0.002081 0.985756 0.006273 0.262352 0.002730 0.731732 0.003187 0.001627 0.001662 0.975937 0.020774 0.004715 0.009897 0.982482 0.002906 0.003516 0.002265 0.990021 0.004198 0.115126 0.781290 0.070606 0.032979 0.032605 0.012432 0.877172 0.077792 0.141988 0.054854 0.722437 0.080721 0.302273 0.282708 0.203472 0.211547 Consensus sequence: VHTGCGGGGGCGGH Alignment: HCCGCCCCCGCAHB CCCRCCCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Original Motif Original Motif Forward 4 8 0.010691 Species: Mus musculus Original motif 0.201535 0.165213 0.201324 0.431929 0.136153 0.443451 0.179132 0.241264 0.263149 0.555137 0.067983 0.113731 0.142183 0.737634 0.045722 0.074461 0.044982 0.884112 0.045356 0.025549 0.246434 0.590578 0.022655 0.140333 0.123049 0.591257 0.033072 0.252622 0.018153 0.944742 0.010254 0.026851 0.035459 0.953844 0.003988 0.006709 0.020000 0.954344 0.005966 0.019690 0.015299 0.964390 0.006755 0.013557 0.028565 0.936152 0.011660 0.023623 0.300127 0.517309 0.029700 0.152863 0.159063 0.513443 0.051834 0.275660 0.158172 0.647055 0.133256 0.061516 Consensus sequence: DBCCCCCCCCCCMYC Reverse complement motif 0.158172 0.133256 0.647055 0.061516 0.159063 0.051834 0.513443 0.275660 0.300127 0.029700 0.517309 0.152863 0.028565 0.011660 0.936152 0.023623 0.015299 0.006755 0.964390 0.013557 0.020000 0.005966 0.954344 0.019690 0.035459 0.003988 0.953844 0.006709 0.018153 0.010254 0.944742 0.026851 0.123049 0.033072 0.591257 0.252622 0.246434 0.022655 0.590578 0.140333 0.044982 0.045356 0.884112 0.025549 0.142183 0.045722 0.737634 0.074461 0.263149 0.067983 0.555137 0.113731 0.136153 0.179132 0.443451 0.241264 0.431929 0.165213 0.201324 0.201535 Consensus sequence: GKRGGGGGGGGGGBD Alignment: DBCCCCCCCCCCMYC ---CCCRCCCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_secondary Original Motif Original Motif Forward 4 8 0.015268 Species: Mus musculus Original motif 0.316572 0.278382 0.152556 0.252490 0.167141 0.257034 0.259894 0.315931 0.175523 0.325956 0.259996 0.238525 0.165052 0.385677 0.239449 0.209822 0.069489 0.782718 0.072454 0.075339 0.049943 0.800636 0.031988 0.117433 0.223382 0.060306 0.552691 0.163621 0.072944 0.818252 0.034406 0.074398 0.070535 0.845127 0.062712 0.021626 0.031035 0.859354 0.055424 0.054187 0.063668 0.798503 0.067274 0.070554 0.348488 0.030697 0.197179 0.423636 0.307220 0.256470 0.181009 0.255301 0.460933 0.285057 0.090258 0.163752 0.315798 0.228431 0.171135 0.284637 0.374527 0.268328 0.198810 0.158335 Consensus sequence: HBBBCCGCCCCWHHHV Reverse complement motif 0.158335 0.268328 0.198810 0.374527 0.284637 0.228431 0.171135 0.315798 0.163752 0.285057 0.090258 0.460933 0.255301 0.256470 0.181009 0.307220 0.423636 0.030697 0.197179 0.348488 0.063668 0.067274 0.798503 0.070554 0.031035 0.055424 0.859354 0.054187 0.070535 0.062712 0.845127 0.021626 0.072944 0.034406 0.818252 0.074398 0.223382 0.552691 0.060306 0.163621 0.049943 0.031988 0.800636 0.117433 0.069489 0.072454 0.782718 0.075339 0.165052 0.239449 0.385677 0.209822 0.175523 0.259996 0.325956 0.238525 0.315931 0.257034 0.259894 0.167141 0.252490 0.278382 0.152556 0.316572 Consensus sequence: BHHHWGGGGCGGBBVH Alignment: HBBBCCGCCCCWHHHV ---CCCRCCCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Original Motif Original Motif Forward 9 8 0.025218 Species: Mus musculus Original motif 0.404007 0.395873 0.173319 0.026801 0.305977 0.215534 0.215359 0.263130 0.370148 0.250957 0.113088 0.265808 0.324336 0.229498 0.174679 0.271487 0.263563 0.137896 0.079217 0.519324 0.265762 0.222582 0.082555 0.429102 0.206721 0.288405 0.017851 0.487023 0.164361 0.236500 0.061051 0.538088 0.593344 0.348446 0.050304 0.007906 0.031328 0.947050 0.007032 0.014590 0.010428 0.956605 0.029142 0.003825 0.459636 0.207616 0.155368 0.177380 0.014573 0.964608 0.012209 0.008610 0.066291 0.918196 0.008729 0.006784 0.019488 0.866774 0.018897 0.094841 0.767405 0.104198 0.029234 0.099164 0.052494 0.772531 0.039832 0.135142 0.296085 0.243498 0.350935 0.109482 0.518843 0.226659 0.124784 0.129714 0.647901 0.019721 0.159901 0.172477 0.113912 0.231511 0.214864 0.439713 0.223117 0.310596 0.293328 0.172959 0.185557 0.487662 0.136321 0.190459 Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Reverse complement motif 0.185557 0.136321 0.487662 0.190459 0.223117 0.293328 0.310596 0.172959 0.439713 0.231511 0.214864 0.113912 0.172477 0.019721 0.159901 0.647901 0.129714 0.226659 0.124784 0.518843 0.296085 0.350935 0.243498 0.109482 0.052494 0.039832 0.772531 0.135142 0.099164 0.104198 0.029234 0.767405 0.019488 0.018897 0.866774 0.094841 0.066291 0.008729 0.918196 0.006784 0.014573 0.012209 0.964608 0.008610 0.177380 0.207616 0.155368 0.459636 0.010428 0.029142 0.956605 0.003825 0.031328 0.007032 0.947050 0.014590 0.007906 0.348446 0.050304 0.593344 0.538088 0.236500 0.061051 0.164361 0.487023 0.288405 0.017851 0.206721 0.429102 0.222582 0.082555 0.265762 0.519324 0.137896 0.079217 0.263563 0.271487 0.229498 0.174679 0.324336 0.265808 0.250957 0.113088 0.370148 0.263130 0.215534 0.215359 0.305977 0.026801 0.395873 0.173319 0.404007 Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH --------CCCRCCCC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Original Motif Original Motif Backward 7 8 0.025853 Species: Mus musculus Original motif 0.136946 0.396508 0.135309 0.331236 0.185528 0.417538 0.215409 0.181525 0.171276 0.341901 0.172832 0.313991 0.145641 0.590572 0.146376 0.117412 0.138035 0.660416 0.114016 0.087533 0.222728 0.750532 0.007528 0.019212 0.024633 0.963314 0.001894 0.010159 0.009557 0.979956 0.000642 0.009844 0.010416 0.977424 0.000541 0.011619 0.026401 0.956740 0.001544 0.015314 0.195502 0.755959 0.011060 0.037480 0.491291 0.364785 0.025613 0.118311 0.305153 0.398160 0.071680 0.225008 0.253497 0.232647 0.213246 0.300610 0.156964 0.297876 0.144683 0.400477 0.179549 0.292514 0.319462 0.208475 Consensus sequence: HVBCCCCCCCCMHHHB Reverse complement motif 0.179549 0.319462 0.292514 0.208475 0.400477 0.297876 0.144683 0.156964 0.300610 0.232647 0.213246 0.253497 0.305153 0.071680 0.398160 0.225008 0.118311 0.364785 0.025613 0.491291 0.195502 0.011060 0.755959 0.037480 0.026401 0.001544 0.956740 0.015314 0.010416 0.000541 0.977424 0.011619 0.009557 0.000642 0.979956 0.009844 0.024633 0.001894 0.963314 0.010159 0.222728 0.007528 0.750532 0.019212 0.138035 0.114016 0.660416 0.087533 0.145641 0.146376 0.590572 0.117412 0.171276 0.172832 0.341901 0.313991 0.185528 0.215409 0.417538 0.181525 0.136946 0.135309 0.396508 0.331236 Consensus sequence: BHHDYGGGGGGGGBVD Alignment: HVBCCCCCCCCMHHHB --CCCRCCCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_secondary Original Motif Reverse Complement Forward 6 8 0.031824 Species: Mus musculus Original motif 0.182057 0.230014 0.276532 0.311397 0.122004 0.156883 0.366166 0.354947 0.209446 0.335433 0.185677 0.269444 0.140035 0.276547 0.302466 0.280952 0.124879 0.019371 0.809895 0.045854 0.647807 0.117014 0.183956 0.051224 0.021434 0.011745 0.954633 0.012188 0.017853 0.009441 0.315429 0.657277 0.166123 0.008326 0.807215 0.018337 0.022775 0.008972 0.947283 0.020970 0.038795 0.033592 0.781209 0.146405 0.728916 0.032888 0.088836 0.149360 0.197826 0.427858 0.055755 0.318561 0.264938 0.196184 0.092516 0.446362 0.267969 0.195624 0.318766 0.217641 0.225006 0.250404 0.267265 0.257324 Consensus sequence: BBHBGAGTGGGAHHDB Reverse complement motif 0.225006 0.267265 0.250404 0.257324 0.267969 0.318766 0.195624 0.217641 0.446362 0.196184 0.092516 0.264938 0.197826 0.055755 0.427858 0.318561 0.149360 0.032888 0.088836 0.728916 0.038795 0.781209 0.033592 0.146405 0.022775 0.947283 0.008972 0.020970 0.166123 0.807215 0.008326 0.018337 0.657277 0.009441 0.315429 0.017853 0.021434 0.954633 0.011745 0.012188 0.051224 0.117014 0.183956 0.647807 0.124879 0.809895 0.019371 0.045854 0.140035 0.302466 0.276547 0.280952 0.209446 0.185677 0.335433 0.269444 0.122004 0.366166 0.156883 0.354947 0.311397 0.230014 0.276532 0.182057 Consensus sequence: BHHDTCCCACTCBDBV Alignment: BHHDTCCCACTCBDBV -----CCCRCCCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Original Motif Reverse Complement Backward 8 8 0.033360 Species: Mus musculus Original motif 0.204923 0.208846 0.365383 0.220848 0.294304 0.300143 0.167287 0.238266 0.109711 0.619514 0.117379 0.153396 0.178979 0.378580 0.230177 0.212264 0.159594 0.542602 0.118178 0.179627 0.125206 0.430074 0.151826 0.292894 0.097692 0.709845 0.116956 0.075506 0.148292 0.565912 0.037632 0.248164 0.077951 0.034190 0.855503 0.032356 0.001657 0.001061 0.971877 0.025405 0.001926 0.001084 0.991712 0.005278 0.033031 0.012001 0.057796 0.897171 0.002723 0.002647 0.993348 0.001281 0.003261 0.000963 0.987199 0.008577 0.000611 0.090925 0.074857 0.833608 0.015299 0.978878 0.004949 0.000874 0.013368 0.600902 0.033485 0.352245 0.231949 0.149575 0.118804 0.499672 0.267580 0.186002 0.371242 0.175176 0.264884 0.223483 0.110082 0.401551 0.221365 0.170121 0.179559 0.428955 0.112997 0.692930 0.139981 0.054092 0.460305 0.207883 0.155111 0.176702 Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Reverse complement motif 0.176702 0.207883 0.155111 0.460305 0.112997 0.139981 0.692930 0.054092 0.428955 0.170121 0.179559 0.221365 0.401551 0.223483 0.110082 0.264884 0.267580 0.371242 0.186002 0.175176 0.499672 0.149575 0.118804 0.231949 0.013368 0.033485 0.600902 0.352245 0.015299 0.004949 0.978878 0.000874 0.833608 0.090925 0.074857 0.000611 0.003261 0.987199 0.000963 0.008577 0.002723 0.993348 0.002647 0.001281 0.897171 0.012001 0.057796 0.033031 0.001926 0.991712 0.001084 0.005278 0.001657 0.971877 0.001061 0.025405 0.077951 0.855503 0.034190 0.032356 0.148292 0.037632 0.565912 0.248164 0.097692 0.116956 0.709845 0.075506 0.125206 0.151826 0.430074 0.292894 0.159594 0.118178 0.542602 0.179627 0.178979 0.230177 0.378580 0.212264 0.109711 0.117379 0.619514 0.153396 0.294304 0.167287 0.300143 0.238266 0.204923 0.365383 0.208846 0.220848 Consensus sequence: HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB --------CCCRCCCC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondary Reverse Complement Reverse Complement Forward 6 8 0.033618 Species: Mus musculus Original motif 0.162979 0.284781 0.237433 0.314807 0.182449 0.447584 0.069464 0.300502 0.298973 0.261014 0.213211 0.226802 0.136039 0.433062 0.144274 0.286625 0.180084 0.395933 0.158565 0.265418 0.069354 0.748510 0.068898 0.113238 0.060485 0.717828 0.075333 0.146354 0.023280 0.071762 0.645500 0.259457 0.166896 0.749762 0.062730 0.020612 0.050401 0.775248 0.089072 0.085279 0.103847 0.767557 0.068804 0.059791 0.064815 0.748318 0.114588 0.072280 0.340921 0.071942 0.242981 0.344157 0.301967 0.263512 0.165927 0.268594 0.479800 0.222955 0.118441 0.178803 0.229469 0.283621 0.143099 0.343811 0.261733 0.180191 0.169905 0.388170 Consensus sequence: BHHBHCCGCCCCDHHHH Reverse complement motif 0.388170 0.180191 0.169905 0.261733 0.343811 0.283621 0.143099 0.229469 0.178803 0.222955 0.118441 0.479800 0.268594 0.263512 0.165927 0.301967 0.344157 0.071942 0.242981 0.340921 0.064815 0.114588 0.748318 0.072280 0.103847 0.068804 0.767557 0.059791 0.050401 0.089072 0.775248 0.085279 0.166896 0.062730 0.749762 0.020612 0.023280 0.645500 0.071762 0.259457 0.060485 0.075333 0.717828 0.146354 0.069354 0.068898 0.748510 0.113238 0.180084 0.158565 0.395933 0.265418 0.136039 0.144274 0.433062 0.286625 0.226802 0.261014 0.213211 0.298973 0.182449 0.069464 0.447584 0.300502 0.314807 0.284781 0.237433 0.162979 Consensus sequence: HHHHDGGGGCGGDBHDV Alignment: HHHHDGGGGCGGDBHDV -----GGGGMGGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 24 Motif name: Motif 24 Original motif 0.000000 1.000000 0.000000 0.000000 0.000000 0.306358 0.000000 0.693642 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: CTGGGA Reserve complement motif 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.693642 0.306358 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: TCCCAG ************************************************************************ Best Matches for Motif ID 24 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_primary Original Motif Original Motif Backward 8 6 0.000000 Species: Mus musculus Original motif 0.302837 0.133017 0.249940 0.314205 0.378542 0.186425 0.250700 0.184332 0.184780 0.144329 0.262766 0.408125 0.308569 0.039689 0.235695 0.416047 0.817738 0.108938 0.033419 0.039905 0.018996 0.007718 0.013175 0.960112 0.009278 0.002422 0.973921 0.014379 0.005587 0.002693 0.985088 0.006633 0.005874 0.004232 0.976927 0.012967 0.951309 0.011835 0.023187 0.013669 0.005927 0.004521 0.005701 0.983851 0.146443 0.003009 0.840720 0.009829 0.002553 0.044504 0.542059 0.410884 0.406299 0.375782 0.133922 0.083997 0.256884 0.160184 0.271190 0.311742 0.388381 0.141811 0.214600 0.255208 0.340877 0.274387 0.205585 0.179151 Consensus sequence: DVDDATGGGATGKMDDV Reverse complement motif 0.179151 0.274387 0.205585 0.340877 0.255208 0.141811 0.214600 0.388381 0.311742 0.160184 0.271190 0.256884 0.083997 0.375782 0.133922 0.406299 0.002553 0.542059 0.044504 0.410884 0.146443 0.840720 0.003009 0.009829 0.983851 0.004521 0.005701 0.005927 0.013669 0.011835 0.023187 0.951309 0.005874 0.976927 0.004232 0.012967 0.005587 0.985088 0.002693 0.006633 0.009278 0.973921 0.002422 0.014379 0.960112 0.007718 0.013175 0.018996 0.039905 0.108938 0.033419 0.817738 0.416047 0.039689 0.235695 0.308569 0.408125 0.144329 0.262766 0.184780 0.184332 0.186425 0.250700 0.378542 0.314205 0.133017 0.249940 0.302837 Consensus sequence: BDDYYCATCCCATDDBD Alignment: DVDDATGGGATGKMDDV ----CTGGGA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00216 Obox1 Reverse Complement Reverse Complement Forward 9 6 0.000601 Species: Mus musculus Original motif 0.239477 0.131084 0.243507 0.385932 0.217543 0.106254 0.206114 0.470089 0.647326 0.113122 0.157767 0.081785 0.447787 0.111541 0.372093 0.068580 0.248541 0.017787 0.686924 0.046748 0.088770 0.008796 0.883034 0.019400 0.049663 0.003287 0.945325 0.001725 0.003569 0.000420 0.960584 0.035426 0.967192 0.029883 0.000248 0.002677 0.001721 0.005927 0.001063 0.991288 0.008389 0.011678 0.000280 0.979653 0.946957 0.000663 0.002329 0.050052 0.711018 0.017942 0.052601 0.218440 0.234125 0.619719 0.073871 0.072285 0.255026 0.148239 0.159856 0.436879 0.448611 0.200869 0.092123 0.258397 0.182337 0.333505 0.182092 0.302066 Consensus sequence: DDARGGGGATTAACDHH Reverse complement motif 0.182337 0.182092 0.333505 0.302066 0.258397 0.200869 0.092123 0.448611 0.436879 0.148239 0.159856 0.255026 0.234125 0.073871 0.619719 0.072285 0.218440 0.017942 0.052601 0.711018 0.050052 0.000663 0.002329 0.946957 0.979653 0.011678 0.000280 0.008389 0.991288 0.005927 0.001063 0.001721 0.002677 0.029883 0.000248 0.967192 0.003569 0.960584 0.000420 0.035426 0.049663 0.945325 0.003287 0.001725 0.088770 0.883034 0.008796 0.019400 0.248541 0.686924 0.017787 0.046748 0.068580 0.111541 0.372093 0.447787 0.081785 0.113122 0.157767 0.647326 0.470089 0.106254 0.206114 0.217543 0.385932 0.131084 0.243507 0.239477 Consensus sequence: DHDGTTAATCCCCKTDD Alignment: DHDGTTAATCCCCKTDD --------TCCCAG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00229 Otx1 Reverse Complement Reverse Complement Forward 10 6 0.014078 Species: Mus musculus Original motif 0.300610 0.149999 0.303810 0.245581 0.194444 0.095366 0.487289 0.222901 0.366838 0.110418 0.162922 0.359822 0.426793 0.049280 0.474292 0.049636 0.176031 0.195172 0.608443 0.020354 0.077179 0.003862 0.916244 0.002715 0.006954 0.001526 0.985903 0.005616 0.953016 0.043074 0.000504 0.003406 0.001743 0.004547 0.001783 0.991927 0.012882 0.003454 0.000402 0.983262 0.939084 0.000404 0.001874 0.058638 0.687439 0.025328 0.143515 0.143718 0.117461 0.128987 0.097084 0.656468 0.291905 0.125407 0.094129 0.488559 0.241296 0.237850 0.201291 0.319563 0.317041 0.222787 0.160309 0.299862 0.187481 0.261819 0.240698 0.310001 Consensus sequence: DDDRGGGATTAATWHHB Reverse complement motif 0.310001 0.261819 0.240698 0.187481 0.299862 0.222787 0.160309 0.317041 0.319563 0.237850 0.201291 0.241296 0.488559 0.125407 0.094129 0.291905 0.656468 0.128987 0.097084 0.117461 0.143718 0.025328 0.143515 0.687439 0.058638 0.000404 0.001874 0.939084 0.983262 0.003454 0.000402 0.012882 0.991927 0.004547 0.001783 0.001743 0.003406 0.043074 0.000504 0.953016 0.006954 0.985903 0.001526 0.005616 0.077179 0.916244 0.003862 0.002715 0.176031 0.608443 0.195172 0.020354 0.426793 0.474292 0.049280 0.049636 0.359822 0.110418 0.162922 0.366838 0.194444 0.487289 0.095366 0.222901 0.300610 0.303810 0.149999 0.245581 Consensus sequence: VHHWATTAATCCCMDHH Alignment: VHHWATTAATCCCMDHH ---------TCCCAG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00160 Obox3 Reverse Complement Reverse Complement Forward 9 6 0.014219 Species: Mus musculus Original motif 0.265987 0.173377 0.153926 0.406710 0.129561 0.268972 0.350646 0.250821 0.342885 0.208848 0.334291 0.113975 0.153240 0.164565 0.582521 0.099674 0.258413 0.031726 0.629457 0.080404 0.111288 0.035159 0.768619 0.084935 0.083021 0.004060 0.905853 0.007066 0.012108 0.002693 0.970145 0.015055 0.982328 0.009671 0.001699 0.006303 0.003572 0.002819 0.006020 0.987589 0.012066 0.006455 0.003574 0.977906 0.954560 0.001995 0.009190 0.034255 0.716184 0.015547 0.126758 0.141512 0.137277 0.673851 0.087215 0.101657 0.282699 0.056894 0.162378 0.498029 0.432159 0.290288 0.109507 0.168046 0.260601 0.267351 0.069676 0.402372 Consensus sequence: HBVGGGGGATTAACWHH Reverse complement motif 0.402372 0.267351 0.069676 0.260601 0.168046 0.290288 0.109507 0.432159 0.498029 0.056894 0.162378 0.282699 0.137277 0.087215 0.673851 0.101657 0.141512 0.015547 0.126758 0.716184 0.034255 0.001995 0.009190 0.954560 0.977906 0.006455 0.003574 0.012066 0.987589 0.002819 0.006020 0.003572 0.006303 0.009671 0.001699 0.982328 0.012108 0.970145 0.002693 0.015055 0.083021 0.905853 0.004060 0.007066 0.111288 0.768619 0.035159 0.084935 0.258413 0.629457 0.031726 0.080404 0.153240 0.582521 0.164565 0.099674 0.113975 0.208848 0.334291 0.342885 0.129561 0.350646 0.268972 0.250821 0.406710 0.173377 0.153926 0.265987 Consensus sequence: HHWGTTAATCCCCCBBH Alignment: HHWGTTAATCCCCCBBH --------TCCCAG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00239 Obox2 Reverse Complement Reverse Complement Backward 4 6 0.018459 Species: Mus musculus Original motif 0.293849 0.125144 0.142440 0.438568 0.122280 0.144634 0.408124 0.324963 0.448856 0.147837 0.312347 0.090959 0.152801 0.059872 0.649129 0.138198 0.187720 0.040843 0.725481 0.045956 0.070379 0.021109 0.864530 0.043982 0.063765 0.006819 0.915928 0.013488 0.018370 0.002669 0.948065 0.030896 0.972042 0.020308 0.001317 0.006333 0.009162 0.002535 0.005655 0.982649 0.024250 0.007414 0.002871 0.965464 0.934913 0.002383 0.012220 0.050484 0.694401 0.019404 0.079194 0.207001 0.290944 0.524953 0.061736 0.122367 0.258089 0.064339 0.154268 0.523303 0.510991 0.233652 0.092796 0.162561 0.221195 0.238061 0.076237 0.464507 Consensus sequence: DBRGGGGGATTAAMTAH Reverse complement motif 0.464507 0.238061 0.076237 0.221195 0.162561 0.233652 0.092796 0.510991 0.523303 0.064339 0.154268 0.258089 0.290944 0.061736 0.524953 0.122367 0.207001 0.019404 0.079194 0.694401 0.050484 0.002383 0.012220 0.934913 0.965464 0.007414 0.002871 0.024250 0.982649 0.002535 0.005655 0.009162 0.006333 0.020308 0.001317 0.972042 0.018370 0.948065 0.002669 0.030896 0.063765 0.915928 0.006819 0.013488 0.070379 0.864530 0.021109 0.043982 0.187720 0.725481 0.040843 0.045956 0.152801 0.649129 0.059872 0.138198 0.090959 0.147837 0.312347 0.448856 0.122280 0.408124 0.144634 0.324963 0.438568 0.125144 0.142440 0.293849 Consensus sequence: HTARTTAATCCCCCKBD Alignment: HTARTTAATCCCCCKBD --------TCCCAG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00416 Fli1 Original Motif Reverse Complement Backward 7 6 0.018604 Species: Mus musculus Original motif 0.306248 0.320757 0.227284 0.145711 0.154859 0.254523 0.255295 0.335323 0.131261 0.300255 0.356247 0.212237 0.349545 0.222549 0.254062 0.173844 0.736280 0.006475 0.242691 0.014555 0.001696 0.522360 0.010544 0.465399 0.082657 0.000819 0.004666 0.911858 0.007818 0.001869 0.001302 0.989011 0.002303 0.992768 0.002361 0.002568 0.002417 0.992259 0.003375 0.001949 0.000360 0.004820 0.907484 0.087336 0.004749 0.022225 0.959164 0.013862 0.197948 0.147167 0.034749 0.620136 0.340568 0.182434 0.187068 0.289930 0.240105 0.146975 0.344334 0.268587 0.189372 0.384338 0.143385 0.282906 Consensus sequence: VBBVAYTTCCGGTDDH Reverse complement motif 0.189372 0.143385 0.384338 0.282906 0.240105 0.344334 0.146975 0.268587 0.289930 0.182434 0.187068 0.340568 0.620136 0.147167 0.034749 0.197948 0.004749 0.959164 0.022225 0.013862 0.000360 0.907484 0.004820 0.087336 0.002417 0.003375 0.992259 0.001949 0.002303 0.002361 0.992768 0.002568 0.989011 0.001869 0.001302 0.007818 0.911858 0.000819 0.004666 0.082657 0.001696 0.010544 0.522360 0.465399 0.014555 0.006475 0.242691 0.736280 0.173844 0.222549 0.254062 0.349545 0.131261 0.356247 0.300255 0.212237 0.335323 0.254523 0.255295 0.154859 0.306248 0.227284 0.320757 0.145711 Consensus sequence: DHDACCGGAAKTBBVV Alignment: DHDACCGGAAKTBBVV ----CTGGGA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00411 Erg Original Motif Reverse Complement Backward 7 6 0.019643 Species: Mus musculus Original motif 0.301267 0.284764 0.255705 0.158264 0.122975 0.233756 0.238767 0.404502 0.154943 0.290275 0.345790 0.208992 0.321204 0.330726 0.177808 0.170262 0.780210 0.006861 0.200535 0.012393 0.001550 0.582732 0.011633 0.404085 0.105245 0.000870 0.004910 0.888976 0.009093 0.001705 0.001205 0.987996 0.002195 0.992811 0.002476 0.002518 0.003021 0.992233 0.002469 0.002278 0.000332 0.004293 0.893671 0.101704 0.005607 0.034448 0.942814 0.017131 0.185818 0.115556 0.035998 0.662628 0.300053 0.198903 0.221728 0.279316 0.186224 0.170560 0.307002 0.336213 0.157640 0.407799 0.198527 0.236034 Consensus sequence: VBBVAYTTCCGGTDDB Reverse complement motif 0.157640 0.198527 0.407799 0.236034 0.336213 0.170560 0.307002 0.186224 0.279316 0.198903 0.221728 0.300053 0.662628 0.115556 0.035998 0.185818 0.005607 0.942814 0.034448 0.017131 0.000332 0.893671 0.004293 0.101704 0.003021 0.002469 0.992233 0.002278 0.002195 0.002476 0.992811 0.002518 0.987996 0.001705 0.001205 0.009093 0.888976 0.000870 0.004910 0.105245 0.001550 0.011633 0.582732 0.404085 0.012393 0.006861 0.200535 0.780210 0.321204 0.177808 0.330726 0.170262 0.154943 0.345790 0.290275 0.208992 0.404502 0.233756 0.238767 0.122975 0.158264 0.284764 0.255705 0.301267 Consensus sequence: BDDACCGGAAKTVBVB Alignment: BDDACCGGAAKTVBVB ----CTGGGA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00413 Elf4 Original Motif Reverse Complement Forward 5 6 0.019681 Species: Mus musculus Original motif 0.349744 0.139466 0.209326 0.301464 0.080478 0.359482 0.307083 0.252956 0.145756 0.213763 0.350557 0.289924 0.317307 0.199359 0.096089 0.387245 0.868576 0.009724 0.088821 0.032878 0.001975 0.827004 0.014159 0.156862 0.045494 0.000985 0.001907 0.951615 0.011012 0.001203 0.002186 0.985599 0.002743 0.992908 0.002226 0.002123 0.001498 0.990840 0.001556 0.006106 0.000951 0.005138 0.880591 0.113319 0.003127 0.107962 0.867980 0.020930 0.156602 0.055355 0.396563 0.391480 0.421246 0.049379 0.084495 0.444880 0.223879 0.068063 0.203809 0.504249 0.144100 0.323579 0.131544 0.400777 Consensus sequence: DBBHACTTCCGGKWTH Reverse complement motif 0.400777 0.323579 0.131544 0.144100 0.504249 0.068063 0.203809 0.223879 0.444880 0.049379 0.084495 0.421246 0.156602 0.396563 0.055355 0.391480 0.003127 0.867980 0.107962 0.020930 0.000951 0.880591 0.005138 0.113319 0.001498 0.001556 0.990840 0.006106 0.002743 0.002226 0.992908 0.002123 0.985599 0.001203 0.002186 0.011012 0.951615 0.000985 0.001907 0.045494 0.001975 0.014159 0.827004 0.156862 0.032878 0.009724 0.088821 0.868576 0.387245 0.199359 0.096089 0.317307 0.145756 0.350557 0.213763 0.289924 0.080478 0.307083 0.359482 0.252956 0.301464 0.139466 0.209326 0.349744 Consensus sequence: HAWYCCGGAAGTHBBD Alignment: HAWYCCGGAAGTHBBD ----CTGGGA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00143 Dobox5 Original Motif Original Motif Backward 10 6 0.019963 Species: Mus musculus Original motif 0.318006 0.161296 0.325541 0.195157 0.313601 0.083023 0.377870 0.225506 0.298208 0.282086 0.190012 0.229693 0.484557 0.174619 0.249175 0.091650 0.178941 0.025979 0.771418 0.023662 0.048080 0.001644 0.948807 0.001469 0.008069 0.000908 0.985703 0.005321 0.964141 0.032554 0.000312 0.002993 0.003637 0.002849 0.001283 0.992231 0.006297 0.007784 0.000276 0.985643 0.930090 0.000696 0.000899 0.068314 0.815261 0.006992 0.154272 0.023474 0.057969 0.177555 0.096246 0.668231 0.236979 0.285921 0.057746 0.419354 0.347812 0.200757 0.249827 0.201604 0.239503 0.153155 0.096118 0.511224 0.234875 0.401818 0.136916 0.226391 Consensus sequence: DDHVGGGATTAATHDTH Reverse complement motif 0.234875 0.136916 0.401818 0.226391 0.511224 0.153155 0.096118 0.239503 0.201604 0.200757 0.249827 0.347812 0.419354 0.285921 0.057746 0.236979 0.668231 0.177555 0.096246 0.057969 0.023474 0.006992 0.154272 0.815261 0.068314 0.000696 0.000899 0.930090 0.985643 0.007784 0.000276 0.006297 0.992231 0.002849 0.001283 0.003637 0.002993 0.032554 0.000312 0.964141 0.008069 0.985703 0.000908 0.005321 0.048080 0.948807 0.001644 0.001469 0.178941 0.771418 0.025979 0.023662 0.091650 0.174619 0.249175 0.484557 0.229693 0.282086 0.190012 0.298208 0.313601 0.377870 0.083023 0.225506 0.318006 0.325541 0.161296 0.195157 Consensus sequence: DADHATTAATCCCBHHH Alignment: DDHVGGGATTAATHDTH --CTGGGA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00265 Pitx3 Reverse Complement Reverse Complement Forward 10 6 0.021062 Species: Mus musculus Original motif 0.376317 0.228810 0.324927 0.069946 0.194464 0.131695 0.538949 0.134892 0.066391 0.226063 0.645457 0.062089 0.174103 0.030838 0.758315 0.036743 0.018838 0.001515 0.979039 0.000608 0.002099 0.002488 0.992192 0.003220 0.958051 0.040431 0.000340 0.001178 0.002126 0.007833 0.000559 0.989482 0.009085 0.005231 0.000358 0.985326 0.975248 0.000371 0.001696 0.022685 0.177679 0.041353 0.541741 0.239227 0.054770 0.772535 0.116688 0.056007 0.157041 0.155159 0.224874 0.462926 0.343501 0.137361 0.357922 0.161216 0.153495 0.344871 0.332684 0.168951 0.125949 0.548089 0.196494 0.129468 Consensus sequence: VGGGGGATTAGCDDBC Reverse complement motif 0.125949 0.196494 0.548089 0.129468 0.153495 0.332684 0.344871 0.168951 0.343501 0.357922 0.137361 0.161216 0.462926 0.155159 0.224874 0.157041 0.054770 0.116688 0.772535 0.056007 0.177679 0.541741 0.041353 0.239227 0.022685 0.000371 0.001696 0.975248 0.985326 0.005231 0.000358 0.009085 0.989482 0.007833 0.000559 0.002126 0.001178 0.040431 0.000340 0.958051 0.002099 0.992192 0.002488 0.003220 0.018838 0.979039 0.001515 0.000608 0.174103 0.758315 0.030838 0.036743 0.066391 0.645457 0.226063 0.062089 0.194464 0.538949 0.131695 0.134892 0.069946 0.228810 0.324927 0.376317 Consensus sequence: GBHDGCTAATCCCCCB Alignment: GBHDGCTAATCCCCCB ---------TCCCAG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 25 Motif name: Motif 25 Original motif 0.034483 0.931034 0.034483 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.827586 0.172414 0.000000 0.862069 0.000000 0.000000 0.137931 0.103448 0.862069 0.000000 0.034483 0.793103 0.034483 0.103448 0.068966 0.241379 0.413793 0.275862 0.068966 0.655172 0.000000 0.344828 0.000000 0.000000 0.827586 0.172414 0.000000 0.965517 0.000000 0.034483 0.000000 0.000000 0.965517 0.034483 0.000000 0.931034 0.000000 0.000000 0.068966 0.068966 0.931034 0.000000 0.000000 0.965517 0.034483 0.000000 0.000000 Consensus sequence: CACACAVRCACACA Reserve complement motif 0.000000 0.034483 0.000000 0.965517 0.068966 0.000000 0.931034 0.000000 0.068966 0.000000 0.000000 0.931034 0.000000 0.034483 0.965517 0.000000 0.000000 0.000000 0.034483 0.965517 0.000000 0.172414 0.827586 0.000000 0.000000 0.000000 0.344828 0.655172 0.241379 0.275862 0.413793 0.068966 0.068966 0.034483 0.103448 0.793103 0.103448 0.000000 0.862069 0.034483 0.137931 0.000000 0.000000 0.862069 0.000000 0.172414 0.827586 0.000000 0.000000 0.000000 0.000000 1.000000 0.034483 0.034483 0.931034 0.000000 Consensus sequence: TGTGTGKVTGTGTG ************************************************************************ Best Matches for Motif ID 25 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Original Motif Original Motif Backward 9 14 0.048759 Species: Mus musculus Original motif 0.168550 0.345968 0.396524 0.088958 0.038113 0.360882 0.114042 0.486963 0.349356 0.180599 0.051416 0.418629 0.258773 0.332518 0.244932 0.163778 0.371663 0.208591 0.263136 0.156609 0.225440 0.321741 0.175932 0.276887 0.100827 0.656850 0.018644 0.223679 0.494140 0.155427 0.327424 0.023009 0.105642 0.805846 0.027712 0.060800 0.065110 0.845072 0.058046 0.031772 0.649343 0.110180 0.180680 0.059797 0.064269 0.853604 0.066860 0.015268 0.437421 0.533797 0.016833 0.011948 0.121694 0.787708 0.016177 0.074421 0.625382 0.066925 0.266070 0.041623 0.117819 0.608153 0.165139 0.108889 0.145639 0.102001 0.604926 0.147434 0.521188 0.184986 0.064607 0.229219 0.180371 0.274237 0.096591 0.448801 0.071055 0.455813 0.332817 0.140315 0.084503 0.199982 0.448293 0.267222 0.389451 0.169545 0.155507 0.285497 0.424314 0.227621 0.101210 0.246855 Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Reverse complement motif 0.246855 0.227621 0.101210 0.424314 0.285497 0.169545 0.155507 0.389451 0.084503 0.448293 0.199982 0.267222 0.071055 0.332817 0.455813 0.140315 0.448801 0.274237 0.096591 0.180371 0.229219 0.184986 0.064607 0.521188 0.145639 0.604926 0.102001 0.147434 0.117819 0.165139 0.608153 0.108889 0.041623 0.066925 0.266070 0.625382 0.121694 0.016177 0.787708 0.074421 0.437421 0.016833 0.533797 0.011948 0.064269 0.066860 0.853604 0.015268 0.059797 0.110180 0.180680 0.649343 0.065110 0.058046 0.845072 0.031772 0.105642 0.027712 0.805846 0.060800 0.023009 0.155427 0.327424 0.494140 0.100827 0.018644 0.656850 0.223679 0.225440 0.175932 0.321741 0.276887 0.156609 0.208591 0.263136 0.371663 0.258773 0.244932 0.332518 0.163778 0.418629 0.180599 0.051416 0.349356 0.486963 0.360882 0.114042 0.038113 0.168550 0.396524 0.345968 0.088958 Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH -CACACAVRCACACA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_second Reverse Complement Reverse Complement Backward 2 14 0.049697 Species: Mus musculus Original motif 0.360404 0.193218 0.248888 0.197490 0.286498 0.224597 0.426555 0.062349 0.347032 0.440548 0.033161 0.179259 0.337062 0.193658 0.385751 0.083529 0.108793 0.005723 0.878300 0.007184 0.015151 0.973406 0.009324 0.002118 0.972117 0.003915 0.019783 0.004185 0.010144 0.980912 0.003106 0.005839 0.974864 0.007532 0.015914 0.001691 0.012441 0.939195 0.029256 0.019108 0.759620 0.106164 0.073819 0.060397 0.157234 0.818234 0.007449 0.017083 0.050076 0.063608 0.505171 0.381144 0.131903 0.538163 0.124608 0.205325 0.367623 0.286526 0.240931 0.104919 0.357798 0.317606 0.097711 0.226885 Consensus sequence: DVMVGCACACACKCVH Reverse complement motif 0.226885 0.317606 0.097711 0.357798 0.104919 0.286526 0.240931 0.367623 0.131903 0.124608 0.538163 0.205325 0.050076 0.505171 0.063608 0.381144 0.157234 0.007449 0.818234 0.017083 0.060397 0.106164 0.073819 0.759620 0.012441 0.029256 0.939195 0.019108 0.001691 0.007532 0.015914 0.974864 0.010144 0.003106 0.980912 0.005839 0.004185 0.003915 0.019783 0.972117 0.015151 0.009324 0.973406 0.002118 0.108793 0.878300 0.005723 0.007184 0.337062 0.385751 0.193658 0.083529 0.347032 0.033161 0.440548 0.179259 0.286498 0.426555 0.224597 0.062349 0.197490 0.193218 0.248888 0.360404 Consensus sequence: HBGYGTGTGTGCVRVD Alignment: HBGYGTGTGTGCVRVD -TGTGTGKVTGTGTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Reverse Complement Original Motif Backward 10 14 0.050339 Species: Mus musculus Original motif 0.319838 0.171199 0.138099 0.370865 0.269358 0.196600 0.346909 0.187133 0.176807 0.338888 0.193903 0.290402 0.230268 0.119645 0.310500 0.339587 0.517372 0.257658 0.111673 0.113296 0.159477 0.126524 0.561119 0.152879 0.117072 0.553013 0.130919 0.198996 0.073372 0.163548 0.525014 0.238066 0.143608 0.186896 0.170528 0.498967 0.054943 0.079034 0.722992 0.143031 0.048852 0.015134 0.852458 0.083556 0.029001 0.023938 0.918900 0.028160 0.036727 0.092645 0.090591 0.780037 0.017757 0.057598 0.895222 0.029423 0.026113 0.048113 0.879744 0.046030 0.023041 0.787043 0.123490 0.066426 0.579766 0.004868 0.296873 0.118493 0.303862 0.042931 0.290151 0.363055 0.099672 0.237431 0.262301 0.400597 0.217788 0.163908 0.367628 0.250676 0.450783 0.141108 0.226137 0.181972 0.485086 0.102553 0.242662 0.169700 0.109057 0.454222 0.145665 0.291056 Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Reverse complement motif 0.109057 0.145665 0.454222 0.291056 0.169700 0.102553 0.242662 0.485086 0.181972 0.141108 0.226137 0.450783 0.217788 0.367628 0.163908 0.250676 0.400597 0.237431 0.262301 0.099672 0.363055 0.042931 0.290151 0.303862 0.118493 0.004868 0.296873 0.579766 0.023041 0.123490 0.787043 0.066426 0.026113 0.879744 0.048113 0.046030 0.017757 0.895222 0.057598 0.029423 0.780037 0.092645 0.090591 0.036727 0.029001 0.918900 0.023938 0.028160 0.048852 0.852458 0.015134 0.083556 0.054943 0.722992 0.079034 0.143031 0.498967 0.186896 0.170528 0.143608 0.073372 0.525014 0.163548 0.238066 0.117072 0.130919 0.553013 0.198996 0.159477 0.561119 0.126524 0.152879 0.113296 0.257658 0.111673 0.517372 0.339587 0.119645 0.310500 0.230268 0.176807 0.193903 0.338888 0.290402 0.269358 0.346909 0.196600 0.187133 0.370865 0.171199 0.138099 0.319838 Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB TGTGTGKVTGTGTG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_secondary Reverse Complement Reverse Complement Backward 1 14 0.050679 Species: Mus musculus Original motif 0.240753 0.425595 0.141281 0.192371 0.367715 0.247224 0.117353 0.267708 0.489169 0.220343 0.113844 0.176644 0.742256 0.042809 0.146704 0.068231 0.078936 0.546144 0.032328 0.342592 0.588419 0.293580 0.082117 0.035885 0.913924 0.026256 0.050778 0.009042 0.009007 0.565680 0.010683 0.414630 0.947562 0.020878 0.018821 0.012739 0.901384 0.021519 0.030204 0.046893 0.077157 0.797900 0.026432 0.098511 0.824314 0.040128 0.051910 0.083648 0.254436 0.342235 0.143789 0.259539 0.319400 0.338163 0.129746 0.212691 0.231014 0.260719 0.169042 0.339225 Consensus sequence: HHHAYAAYAACAHHH Reverse complement motif 0.339225 0.260719 0.169042 0.231014 0.319400 0.129746 0.338163 0.212691 0.254436 0.143789 0.342235 0.259539 0.083648 0.040128 0.051910 0.824314 0.077157 0.026432 0.797900 0.098511 0.046893 0.021519 0.030204 0.901384 0.012739 0.020878 0.018821 0.947562 0.009007 0.010683 0.565680 0.414630 0.009042 0.026256 0.050778 0.913924 0.035885 0.293580 0.082117 0.588419 0.078936 0.032328 0.546144 0.342592 0.068231 0.042809 0.146704 0.742256 0.176644 0.220343 0.113844 0.489169 0.267708 0.247224 0.117353 0.367715 0.240753 0.141281 0.425595 0.192371 Consensus sequence: HDDTGTTKTTKTHHD Alignment: HDDTGTTKTTKTHHD -TGTGTGKVTGTGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00036 Myf6_secondary Original Motif Original Motif Forward 2 14 0.051611 Species: Mus musculus Original motif 0.345146 0.261059 0.273931 0.119863 0.222137 0.272923 0.332024 0.172916 0.269602 0.278951 0.245221 0.206225 0.485406 0.144018 0.294421 0.076155 0.577731 0.270563 0.078955 0.072752 0.070027 0.750816 0.062819 0.116339 0.685018 0.105175 0.137110 0.072697 0.162574 0.071041 0.638464 0.127921 0.343240 0.389633 0.206226 0.060900 0.080169 0.790323 0.114211 0.015297 0.167035 0.201642 0.462780 0.168543 0.114383 0.664317 0.166143 0.055157 0.392143 0.114475 0.340085 0.153298 0.208147 0.577473 0.142694 0.071686 0.168632 0.563135 0.066181 0.202052 Consensus sequence: VVVRACAGVCBCDCC Reverse complement motif 0.168632 0.066181 0.563135 0.202052 0.208147 0.142694 0.577473 0.071686 0.153298 0.114475 0.340085 0.392143 0.114383 0.166143 0.664317 0.055157 0.167035 0.462780 0.201642 0.168543 0.080169 0.114211 0.790323 0.015297 0.343240 0.206226 0.389633 0.060900 0.162574 0.638464 0.071041 0.127921 0.072697 0.105175 0.137110 0.685018 0.070027 0.062819 0.750816 0.116339 0.072752 0.270563 0.078955 0.577731 0.076155 0.144018 0.294421 0.485406 0.269602 0.245221 0.278951 0.206225 0.222137 0.332024 0.272923 0.172916 0.119863 0.261059 0.273931 0.345146 Consensus sequence: GGDGBGVCTGTKVVB Alignment: VVVRACAGVCBCDCC -CACACAVRCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Original Motif Reverse Complement Forward 1 14 0.052370 Species: Mus musculus Original motif 0.067627 0.131333 0.654425 0.146615 0.156488 0.114442 0.145630 0.583441 0.206450 0.265630 0.358017 0.169903 0.090729 0.460713 0.274712 0.173847 0.285994 0.099998 0.154485 0.459523 0.635908 0.184787 0.072982 0.106323 0.748421 0.039204 0.092605 0.119769 0.081342 0.061327 0.044532 0.812799 0.143120 0.043879 0.024216 0.788785 0.247544 0.092102 0.621453 0.038901 0.295531 0.036295 0.027594 0.640580 0.194561 0.305468 0.339916 0.160055 0.175038 0.193568 0.101212 0.530182 0.145226 0.167488 0.559871 0.127415 0.271501 0.237429 0.206701 0.284369 0.216834 0.109191 0.569605 0.104370 0.182624 0.177160 0.300475 0.339742 0.331737 0.198645 0.265137 0.204482 0.230155 0.359365 0.183450 0.227029 0.056581 0.067297 0.463052 0.413070 0.198891 0.324626 0.304424 0.172059 0.181968 0.287547 0.202419 0.328066 Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Reverse complement motif 0.328066 0.287547 0.202419 0.181968 0.198891 0.304424 0.324626 0.172059 0.056581 0.463052 0.067297 0.413070 0.230155 0.183450 0.359365 0.227029 0.204482 0.198645 0.265137 0.331737 0.339742 0.177160 0.300475 0.182624 0.216834 0.569605 0.109191 0.104370 0.284369 0.237429 0.206701 0.271501 0.145226 0.559871 0.167488 0.127415 0.530182 0.193568 0.101212 0.175038 0.194561 0.339916 0.305468 0.160055 0.640580 0.036295 0.027594 0.295531 0.247544 0.621453 0.092102 0.038901 0.788785 0.043879 0.024216 0.143120 0.812799 0.061327 0.044532 0.081342 0.119769 0.039204 0.092605 0.748421 0.106323 0.184787 0.072982 0.635908 0.459523 0.099998 0.154485 0.285994 0.090729 0.274712 0.460713 0.173847 0.206450 0.358017 0.265630 0.169903 0.583441 0.114442 0.145630 0.156488 0.067627 0.654425 0.131333 0.146615 Consensus sequence: VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC CACACAVRCACACA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00026 Zscan4_primary Original Motif Original Motif Forward 1 14 0.055735 Species: Mus musculus Original motif 0.203927 0.157260 0.307071 0.331743 0.360341 0.265216 0.147327 0.227115 0.251195 0.298806 0.241051 0.208949 0.487186 0.122472 0.214362 0.175980 0.122838 0.051062 0.055773 0.770327 0.020467 0.009992 0.965816 0.003725 0.005887 0.026663 0.006808 0.960643 0.030656 0.002167 0.965099 0.002078 0.002078 0.965099 0.002167 0.030656 0.960643 0.006808 0.026663 0.005887 0.003725 0.965816 0.009992 0.020467 0.770327 0.055773 0.051062 0.122838 0.044808 0.382307 0.042920 0.529965 0.751320 0.047417 0.044482 0.156781 0.362742 0.228898 0.085373 0.322987 0.436635 0.111479 0.217284 0.234601 0.303930 0.285374 0.195872 0.214824 Consensus sequence: DHVDTGTGCACAYAHDH Reverse complement motif 0.214824 0.285374 0.195872 0.303930 0.234601 0.111479 0.217284 0.436635 0.322987 0.228898 0.085373 0.362742 0.156781 0.047417 0.044482 0.751320 0.529965 0.382307 0.042920 0.044808 0.122838 0.055773 0.051062 0.770327 0.003725 0.009992 0.965816 0.020467 0.005887 0.006808 0.026663 0.960643 0.002078 0.002167 0.965099 0.030656 0.030656 0.965099 0.002167 0.002078 0.960643 0.026663 0.006808 0.005887 0.020467 0.965816 0.009992 0.003725 0.770327 0.051062 0.055773 0.122838 0.175980 0.122472 0.214362 0.487186 0.251195 0.241051 0.298806 0.208949 0.227115 0.265216 0.147327 0.360341 0.331743 0.157260 0.307071 0.203927 Consensus sequence: HDHTMTGTGCACADVHD Alignment: DHVDTGTGCACAYAHDH CACACAVRCACACA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondary Original Motif Original Motif Forward 2 14 0.057857 Species: Mus musculus Original motif 0.477863 0.106306 0.184102 0.231729 0.304951 0.149020 0.361418 0.184612 0.548996 0.056128 0.348902 0.045974 0.385727 0.477782 0.086218 0.050273 0.409556 0.232265 0.173851 0.184328 0.174550 0.312880 0.307123 0.205448 0.850398 0.047204 0.041665 0.060734 0.141234 0.548534 0.142230 0.168002 0.059462 0.026354 0.892948 0.021236 0.053714 0.870297 0.028935 0.047055 0.086273 0.069147 0.805284 0.039296 0.033781 0.573881 0.034115 0.358223 0.035191 0.079663 0.824970 0.060176 0.051830 0.862631 0.019359 0.066180 0.178685 0.015738 0.762485 0.043092 0.058988 0.042615 0.017608 0.880789 0.202382 0.173360 0.284095 0.340163 0.098493 0.234651 0.506524 0.160333 0.109087 0.336204 0.250510 0.304198 0.130945 0.250843 0.177122 0.441090 0.353830 0.138838 0.162784 0.344548 0.114290 0.417163 0.160662 0.307885 Consensus sequence: DDRMHBACGCGYGCGTDGBBDB Reverse complement motif 0.114290 0.160662 0.417163 0.307885 0.344548 0.138838 0.162784 0.353830 0.441090 0.250843 0.177122 0.130945 0.109087 0.250510 0.336204 0.304198 0.098493 0.506524 0.234651 0.160333 0.340163 0.173360 0.284095 0.202382 0.880789 0.042615 0.017608 0.058988 0.178685 0.762485 0.015738 0.043092 0.051830 0.019359 0.862631 0.066180 0.035191 0.824970 0.079663 0.060176 0.033781 0.034115 0.573881 0.358223 0.086273 0.805284 0.069147 0.039296 0.053714 0.028935 0.870297 0.047055 0.059462 0.892948 0.026354 0.021236 0.141234 0.142230 0.548534 0.168002 0.060734 0.047204 0.041665 0.850398 0.174550 0.307123 0.312880 0.205448 0.184328 0.232265 0.173851 0.409556 0.385727 0.086218 0.477782 0.050273 0.045974 0.056128 0.348902 0.548996 0.304951 0.361418 0.149020 0.184612 0.231729 0.106306 0.184102 0.477863 Consensus sequence: BDVBCDACGCKCGCGTBHRKHD Alignment: DDRMHBACGCGYGCGTDGBBDB -CACACAVRCACACA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Reverse Complement Backward 4 14 0.058005 Species: Mus musculus Original motif 0.104824 0.412716 0.254506 0.227955 0.644922 0.065476 0.140479 0.149122 0.201205 0.166164 0.347131 0.285501 0.360606 0.256316 0.150766 0.232313 0.199831 0.240681 0.279350 0.280137 0.234308 0.204076 0.321306 0.240310 0.274112 0.462435 0.111425 0.152028 0.067070 0.717501 0.073934 0.141496 0.106745 0.084442 0.658566 0.150247 0.025128 0.967053 0.003585 0.004234 0.006412 0.982989 0.003227 0.007371 0.009588 0.877620 0.002571 0.110221 0.621521 0.355443 0.015669 0.007366 0.002600 0.980275 0.004191 0.012934 0.118773 0.026658 0.783843 0.070725 0.022358 0.822101 0.024684 0.130857 0.713212 0.080912 0.128793 0.077084 0.166568 0.250955 0.107934 0.474544 0.225040 0.222494 0.163301 0.389166 0.268976 0.223206 0.265314 0.242504 0.137052 0.229058 0.148439 0.485451 0.135819 0.304550 0.141994 0.417637 0.272440 0.319501 0.230580 0.177478 Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Reverse complement motif 0.272440 0.230580 0.319501 0.177478 0.417637 0.304550 0.141994 0.135819 0.485451 0.229058 0.148439 0.137052 0.242504 0.223206 0.265314 0.268976 0.389166 0.222494 0.163301 0.225040 0.474544 0.250955 0.107934 0.166568 0.077084 0.080912 0.128793 0.713212 0.022358 0.024684 0.822101 0.130857 0.118773 0.783843 0.026658 0.070725 0.002600 0.004191 0.980275 0.012934 0.007366 0.355443 0.015669 0.621521 0.009588 0.002571 0.877620 0.110221 0.006412 0.003227 0.982989 0.007371 0.025128 0.003585 0.967053 0.004234 0.106745 0.658566 0.084442 0.150247 0.067070 0.073934 0.717501 0.141496 0.274112 0.111425 0.462435 0.152028 0.234308 0.321306 0.204076 0.240310 0.280137 0.240681 0.279350 0.199831 0.232313 0.256316 0.150766 0.360606 0.201205 0.347131 0.166164 0.285501 0.149122 0.065476 0.140479 0.644922 0.104824 0.254506 0.412716 0.227955 Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB ------TGTGTGKVTGTGTG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00014 Sox17_secondary Reverse Complement Reverse Complement Backward 2 14 0.058124 Species: Mus musculus Original motif 0.216056 0.230834 0.399857 0.153253 0.321065 0.233860 0.135741 0.309334 0.166479 0.321423 0.209463 0.302635 0.185647 0.499038 0.152355 0.162961 0.416451 0.221510 0.168645 0.193395 0.070777 0.581761 0.126392 0.221070 0.764583 0.085635 0.031993 0.117789 0.035294 0.112638 0.038664 0.813404 0.153178 0.046321 0.056161 0.744340 0.076540 0.825062 0.055409 0.042989 0.764357 0.060365 0.119861 0.055417 0.130143 0.178946 0.153266 0.537644 0.402684 0.154010 0.357674 0.085632 0.189784 0.349553 0.176965 0.283698 0.475181 0.145276 0.256449 0.123094 0.472286 0.151639 0.172736 0.203339 0.215278 0.186804 0.213020 0.384898 Consensus sequence: VHBHHCATTCATRHVDD Reverse complement motif 0.384898 0.186804 0.213020 0.215278 0.203339 0.151639 0.172736 0.472286 0.123094 0.145276 0.256449 0.475181 0.189784 0.176965 0.349553 0.283698 0.085632 0.154010 0.357674 0.402684 0.537644 0.178946 0.153266 0.130143 0.055417 0.060365 0.119861 0.764357 0.076540 0.055409 0.825062 0.042989 0.744340 0.046321 0.056161 0.153178 0.813404 0.112638 0.038664 0.035294 0.117789 0.085635 0.031993 0.764583 0.070777 0.126392 0.581761 0.221070 0.193395 0.221510 0.168645 0.416451 0.185647 0.152355 0.499038 0.162961 0.166479 0.209463 0.321423 0.302635 0.309334 0.233860 0.135741 0.321065 0.216056 0.399857 0.230834 0.153253 Consensus sequence: DDBDKATGAATGHDBHV Alignment: DDBDKATGAATGHDBHV --TGTGTGKVTGTGTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 26 Motif name: Motif 26 Original motif 0.169492 0.000000 0.000000 0.830508 0.169492 0.033898 0.372881 0.423729 0.152542 0.000000 0.305085 0.542373 0.203390 0.000000 0.000000 0.796610 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.203390 0.576271 0.220339 0.271186 0.135593 0.050847 0.542374 0.016949 0.152542 0.033898 0.796611 0.016949 0.000000 0.101695 0.881356 0.084746 0.000000 0.135593 0.779661 0.050847 0.000000 0.067797 0.881356 0.000000 0.169492 0.152542 0.677966 0.000000 0.000000 0.169492 0.830508 Consensus sequence: TKKTTTGTTTTTTT Reserve complement motif 0.830508 0.000000 0.169492 0.000000 0.677966 0.169492 0.152542 0.000000 0.881356 0.000000 0.067797 0.050847 0.779661 0.000000 0.135593 0.084746 0.881356 0.000000 0.101695 0.016949 0.796611 0.152542 0.033898 0.016949 0.542374 0.135593 0.050847 0.271186 0.000000 0.576271 0.203390 0.220339 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.796610 0.000000 0.000000 0.203390 0.542373 0.000000 0.305085 0.152542 0.423729 0.033898 0.372881 0.169492 0.830508 0.000000 0.000000 0.169492 Consensus sequence: AAAAAAACAAARRA ************************************************************************ Best Matches for Motif ID 26 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_secondary Original Motif Reverse Complement Backward 3 14 0.031934 Species: Mus musculus Original motif 0.560226 0.121586 0.083231 0.234957 0.318077 0.149137 0.179955 0.352831 0.482497 0.118420 0.173594 0.225488 0.200166 0.160901 0.191493 0.447440 0.033691 0.569719 0.018901 0.377690 0.638020 0.166545 0.021254 0.174181 0.573953 0.105729 0.009308 0.311010 0.890518 0.053364 0.013424 0.042694 0.910758 0.028166 0.032648 0.028428 0.013358 0.738707 0.023981 0.223953 0.911783 0.018754 0.031898 0.037564 0.702891 0.068940 0.076823 0.151346 0.445507 0.320769 0.057216 0.176507 0.587798 0.129586 0.140592 0.142024 0.258981 0.330939 0.167334 0.242747 0.362022 0.333796 0.145861 0.158320 Consensus sequence: ADDDYAWAACAAMAHH Reverse complement motif 0.158320 0.333796 0.145861 0.362022 0.258981 0.167334 0.330939 0.242747 0.142024 0.129586 0.140592 0.587798 0.176507 0.320769 0.057216 0.445507 0.151346 0.068940 0.076823 0.702891 0.037564 0.018754 0.031898 0.911783 0.013358 0.023981 0.738707 0.223953 0.028428 0.028166 0.032648 0.910758 0.042694 0.053364 0.013424 0.890518 0.311010 0.105729 0.009308 0.573953 0.174181 0.166545 0.021254 0.638020 0.033691 0.018901 0.569719 0.377690 0.447440 0.160901 0.191493 0.200166 0.225488 0.118420 0.173594 0.482497 0.352831 0.149137 0.179955 0.318077 0.234957 0.121586 0.083231 0.560226 Consensus sequence: HDTYTTGTTWTKDDDT Alignment: HDTYTTGTTWTKDDDT TKKTTTGTTTTTTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Reverse Complement Original Motif Backward 4 14 0.036836 Species: Mus musculus Original motif 0.427843 0.231210 0.119424 0.221523 0.196506 0.239531 0.304906 0.259057 0.302488 0.156922 0.290190 0.250401 0.433872 0.149126 0.196496 0.220506 0.258426 0.076511 0.475100 0.189963 0.841714 0.046453 0.099915 0.011918 0.983853 0.001612 0.001362 0.013174 0.003460 0.982032 0.005728 0.008780 0.989743 0.002253 0.002020 0.005984 0.990761 0.003397 0.002843 0.003000 0.770864 0.003540 0.001549 0.224048 0.235342 0.002598 0.757383 0.004677 0.371426 0.089574 0.529959 0.009040 0.480804 0.196949 0.240413 0.081833 0.187158 0.355102 0.216599 0.241142 0.248006 0.232182 0.157452 0.362360 0.403367 0.177684 0.164649 0.254300 Consensus sequence: HBDDDAACAAAGRVBHH Reverse complement motif 0.254300 0.177684 0.164649 0.403367 0.362360 0.232182 0.157452 0.248006 0.187158 0.216599 0.355102 0.241142 0.081833 0.196949 0.240413 0.480804 0.371426 0.529959 0.089574 0.009040 0.235342 0.757383 0.002598 0.004677 0.224048 0.003540 0.001549 0.770864 0.003000 0.003397 0.002843 0.990761 0.005984 0.002253 0.002020 0.989743 0.003460 0.005728 0.982032 0.008780 0.013174 0.001612 0.001362 0.983853 0.011918 0.046453 0.099915 0.841714 0.258426 0.475100 0.076511 0.189963 0.220506 0.149126 0.196496 0.433872 0.250401 0.156922 0.290190 0.302488 0.196506 0.304906 0.239531 0.259057 0.221523 0.231210 0.119424 0.427843 Consensus sequence: HHBBMCTTTGTTHDDBH Alignment: HBDDDAACAAAGRVBHH AAAAAAACAAARRA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Reverse Complement Original Motif Forward 1 14 0.037030 Species: Mus musculus Original motif 0.351812 0.238467 0.143954 0.265768 0.195246 0.235838 0.281473 0.287443 0.349478 0.172616 0.210739 0.267167 0.484061 0.110438 0.173131 0.232370 0.276692 0.070713 0.479604 0.172991 0.859124 0.044167 0.083951 0.012758 0.975608 0.002029 0.002285 0.020079 0.006422 0.978485 0.007124 0.007969 0.987489 0.003025 0.002868 0.006617 0.987739 0.005463 0.002730 0.004067 0.693013 0.004067 0.002445 0.300475 0.189100 0.003677 0.801408 0.005814 0.352090 0.072517 0.567737 0.007656 0.542316 0.176545 0.192768 0.088371 0.196382 0.304176 0.205985 0.293457 0.289415 0.201358 0.182937 0.326290 0.385801 0.216362 0.152363 0.245475 Consensus sequence: HBDDRAACAAAGRABHH Reverse complement motif 0.245475 0.216362 0.152363 0.385801 0.326290 0.201358 0.182937 0.289415 0.196382 0.205985 0.304176 0.293457 0.088371 0.176545 0.192768 0.542316 0.352090 0.567737 0.072517 0.007656 0.189100 0.801408 0.003677 0.005814 0.300475 0.004067 0.002445 0.693013 0.004067 0.005463 0.002730 0.987739 0.006617 0.003025 0.002868 0.987489 0.006422 0.007124 0.978485 0.007969 0.020079 0.002029 0.002285 0.975608 0.012758 0.044167 0.083951 0.859124 0.276692 0.479604 0.070713 0.172991 0.232370 0.110438 0.173131 0.484061 0.267167 0.172616 0.210739 0.349478 0.287443 0.235838 0.281473 0.195246 0.265768 0.238467 0.143954 0.351812 Consensus sequence: HHBTMCTTTGTTMDDVH Alignment: HBDDRAACAAAGRABHH AAAAAAACAAARRA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_secondary Original Motif Reverse Complement Backward 3 14 0.038882 Species: Mus musculus Original motif 0.162968 0.284828 0.440984 0.111220 0.151392 0.200635 0.205316 0.442657 0.267215 0.083669 0.192498 0.456618 0.332771 0.180711 0.200027 0.286491 0.509370 0.102954 0.242569 0.145107 0.666262 0.077309 0.154466 0.101962 0.737968 0.113335 0.100401 0.048296 0.658878 0.141580 0.134033 0.065510 0.766115 0.094051 0.069763 0.070072 0.755621 0.088491 0.044802 0.111086 0.749083 0.135917 0.047510 0.067490 0.663231 0.176795 0.028134 0.131839 0.553358 0.277659 0.038655 0.130328 0.392578 0.314083 0.209844 0.083495 0.198462 0.237132 0.239466 0.324940 0.275121 0.210087 0.194779 0.320013 0.287748 0.277395 0.142704 0.292154 Consensus sequence: VBDDAAAAAAAAMVBHH Reverse complement motif 0.292154 0.277395 0.142704 0.287748 0.320013 0.210087 0.194779 0.275121 0.324940 0.237132 0.239466 0.198462 0.083495 0.314083 0.209844 0.392578 0.130328 0.277659 0.038655 0.553358 0.131839 0.176795 0.028134 0.663231 0.067490 0.135917 0.047510 0.749083 0.111086 0.088491 0.044802 0.755621 0.070072 0.094051 0.069763 0.766115 0.065510 0.141580 0.134033 0.658878 0.048296 0.113335 0.100401 0.737968 0.101962 0.077309 0.154466 0.666262 0.145107 0.102954 0.242569 0.509370 0.286491 0.180711 0.200027 0.332771 0.456618 0.083669 0.192498 0.267215 0.442657 0.200635 0.205316 0.151392 0.162968 0.440984 0.284828 0.111220 Consensus sequence: HHVBYTTTTTTTTDDVV Alignment: HHVBYTTTTTTTTDDVV -TKKTTTGTTTTTTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00101 Sox12_secondary Reverse Complement Original Motif Forward 1 14 0.040260 Species: Mus musculus Original motif 0.378898 0.318901 0.205859 0.096341 0.352524 0.321236 0.224504 0.101736 0.323551 0.182056 0.210897 0.283496 0.135539 0.325230 0.208031 0.331200 0.663106 0.055471 0.154459 0.126963 0.051748 0.292567 0.537307 0.118378 0.886489 0.042361 0.035742 0.035408 0.043647 0.688744 0.094358 0.173252 0.882052 0.039818 0.018899 0.059231 0.864171 0.036011 0.068363 0.031455 0.790158 0.046868 0.041594 0.121379 0.087447 0.143905 0.707798 0.060849 0.295919 0.132479 0.485703 0.085899 0.653156 0.133004 0.110012 0.103828 0.351764 0.131771 0.217730 0.298736 0.203977 0.196773 0.099958 0.499292 Consensus sequence: VVDBASACAAAGRADH Reverse complement motif 0.499292 0.196773 0.099958 0.203977 0.298736 0.131771 0.217730 0.351764 0.103828 0.133004 0.110012 0.653156 0.295919 0.485703 0.132479 0.085899 0.087447 0.707798 0.143905 0.060849 0.121379 0.046868 0.041594 0.790158 0.031455 0.036011 0.068363 0.864171 0.059231 0.039818 0.018899 0.882052 0.043647 0.094358 0.688744 0.173252 0.035408 0.042361 0.035742 0.886489 0.051748 0.537307 0.292567 0.118378 0.126963 0.055471 0.154459 0.663106 0.331200 0.325230 0.208031 0.135539 0.283496 0.182056 0.210897 0.323551 0.101736 0.321236 0.224504 0.352524 0.096341 0.318901 0.205859 0.378898 Consensus sequence: HDTMCTTTGTSTVDBB Alignment: HDTMCTTTGTSTVDBB AAAAAAACAAARRA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_secondary Reverse Complement Original Motif Forward 2 14 0.040284 Species: Mus musculus Original motif 0.337264 0.231140 0.283651 0.147945 0.347118 0.236817 0.257338 0.158726 0.431380 0.126811 0.187071 0.254738 0.585753 0.089587 0.164350 0.160310 0.590169 0.225841 0.088487 0.095503 0.091374 0.098551 0.099596 0.710479 0.790999 0.060485 0.081771 0.066745 0.738945 0.032660 0.093144 0.135251 0.071350 0.719067 0.064337 0.145246 0.820757 0.079130 0.029431 0.070682 0.603611 0.145951 0.097449 0.152989 0.530021 0.143634 0.190469 0.135877 0.231297 0.288099 0.276056 0.204548 0.202920 0.232513 0.431635 0.132933 0.198379 0.292889 0.308599 0.200133 Consensus sequence: VVDAATAACAAAVVB Reverse complement motif 0.198379 0.308599 0.292889 0.200133 0.202920 0.431635 0.232513 0.132933 0.231297 0.276056 0.288099 0.204548 0.135877 0.143634 0.190469 0.530021 0.152989 0.145951 0.097449 0.603611 0.070682 0.079130 0.029431 0.820757 0.071350 0.064337 0.719067 0.145246 0.135251 0.032660 0.093144 0.738945 0.066745 0.060485 0.081771 0.790999 0.710479 0.098551 0.099596 0.091374 0.095503 0.225841 0.088487 0.590169 0.160310 0.089587 0.164350 0.585753 0.254738 0.126811 0.187071 0.431380 0.158726 0.236817 0.257338 0.347118 0.147945 0.231140 0.283651 0.337264 Consensus sequence: BVVTTTGTTATTDBB Alignment: VVDAATAACAAAVVB -AAAAAAACAAARRA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Reverse Complement Original Motif Backward 7 14 0.040935 Species: Mus musculus Original motif 0.360997 0.300272 0.115555 0.223177 0.309749 0.228429 0.166233 0.295589 0.149419 0.176868 0.240155 0.433558 0.379704 0.095791 0.276373 0.248133 0.394549 0.174184 0.130641 0.300626 0.443749 0.070776 0.211081 0.274393 0.364301 0.074356 0.370406 0.190936 0.791976 0.038475 0.093390 0.076159 0.963721 0.001826 0.002456 0.031997 0.004516 0.954596 0.008092 0.032796 0.981080 0.002062 0.002161 0.014697 0.986185 0.001846 0.006976 0.004992 0.059567 0.003649 0.002189 0.934595 0.495328 0.024257 0.240450 0.239965 0.305027 0.094878 0.526069 0.074025 0.418442 0.196237 0.158323 0.226998 0.336713 0.220452 0.191155 0.251680 0.192296 0.300342 0.169047 0.338315 0.240387 0.144634 0.128513 0.486465 0.290763 0.271259 0.116600 0.321377 0.224825 0.296233 0.229255 0.249687 0.493240 0.171285 0.075148 0.260326 Consensus sequence: HHBDHDDAACAATDRHHHHHBW Reverse complement motif 0.260326 0.171285 0.075148 0.493240 0.224825 0.229255 0.296233 0.249687 0.321377 0.271259 0.116600 0.290763 0.486465 0.144634 0.128513 0.240387 0.338315 0.300342 0.169047 0.192296 0.251680 0.220452 0.191155 0.336713 0.226998 0.196237 0.158323 0.418442 0.305027 0.526069 0.094878 0.074025 0.239965 0.024257 0.240450 0.495328 0.934595 0.003649 0.002189 0.059567 0.004992 0.001846 0.006976 0.986185 0.014697 0.002062 0.002161 0.981080 0.004516 0.008092 0.954596 0.032796 0.031997 0.001826 0.002456 0.963721 0.076159 0.038475 0.093390 0.791976 0.364301 0.370406 0.074356 0.190936 0.274393 0.070776 0.211081 0.443749 0.300626 0.174184 0.130641 0.394549 0.248133 0.095791 0.276373 0.379704 0.433558 0.176868 0.240155 0.149419 0.295589 0.228429 0.166233 0.309749 0.223177 0.300272 0.115555 0.360997 Consensus sequence: WBHHHHHMDATTGTTHDHDVHH Alignment: HHBDHDDAACAATDRHHHHHBW --AAAAAAACAAARRA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_secondary Original Motif Reverse Complement Backward 1 14 0.041617 Species: Mus musculus Original motif 0.240753 0.425595 0.141281 0.192371 0.367715 0.247224 0.117353 0.267708 0.489169 0.220343 0.113844 0.176644 0.742256 0.042809 0.146704 0.068231 0.078936 0.546144 0.032328 0.342592 0.588419 0.293580 0.082117 0.035885 0.913924 0.026256 0.050778 0.009042 0.009007 0.565680 0.010683 0.414630 0.947562 0.020878 0.018821 0.012739 0.901384 0.021519 0.030204 0.046893 0.077157 0.797900 0.026432 0.098511 0.824314 0.040128 0.051910 0.083648 0.254436 0.342235 0.143789 0.259539 0.319400 0.338163 0.129746 0.212691 0.231014 0.260719 0.169042 0.339225 Consensus sequence: HHHAYAAYAACAHHH Reverse complement motif 0.339225 0.260719 0.169042 0.231014 0.319400 0.129746 0.338163 0.212691 0.254436 0.143789 0.342235 0.259539 0.083648 0.040128 0.051910 0.824314 0.077157 0.026432 0.797900 0.098511 0.046893 0.021519 0.030204 0.901384 0.012739 0.020878 0.018821 0.947562 0.009007 0.010683 0.565680 0.414630 0.009042 0.026256 0.050778 0.913924 0.035885 0.293580 0.082117 0.588419 0.078936 0.032328 0.546144 0.342592 0.068231 0.042809 0.146704 0.742256 0.176644 0.220343 0.113844 0.489169 0.267708 0.247224 0.117353 0.367715 0.240753 0.141281 0.425595 0.192371 Consensus sequence: HDDTGTTKTTKTHHD Alignment: HHHAYAAYAACAHHH -TKKTTTGTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_primary Reverse Complement Original Motif Backward 1 14 0.041902 Species: Mus musculus Original motif 0.273456 0.257473 0.208488 0.260583 0.338566 0.133379 0.306363 0.221693 0.475488 0.192852 0.156858 0.174803 0.506619 0.132646 0.170373 0.190362 0.349042 0.127275 0.325924 0.197759 0.303850 0.013619 0.678034 0.004497 0.014136 0.015691 0.003073 0.967100 0.913373 0.082928 0.001910 0.001789 0.956294 0.017745 0.000584 0.025378 0.987796 0.001685 0.004159 0.006360 0.002288 0.814764 0.001427 0.181521 0.986707 0.002688 0.003346 0.007259 0.787378 0.065481 0.057961 0.089180 0.572982 0.089910 0.066184 0.270924 0.224167 0.339979 0.258886 0.176968 0.268414 0.272007 0.239541 0.220038 0.241771 0.394748 0.174273 0.189208 Consensus sequence: HDHADGTAAACAAAVVH Reverse complement motif 0.241771 0.174273 0.394748 0.189208 0.268414 0.239541 0.272007 0.220038 0.224167 0.258886 0.339979 0.176968 0.270924 0.089910 0.066184 0.572982 0.089180 0.065481 0.057961 0.787378 0.007259 0.002688 0.003346 0.986707 0.002288 0.001427 0.814764 0.181521 0.006360 0.001685 0.004159 0.987796 0.025378 0.017745 0.000584 0.956294 0.001789 0.082928 0.001910 0.913373 0.967100 0.015691 0.003073 0.014136 0.303850 0.678034 0.013619 0.004497 0.197759 0.127275 0.325924 0.349042 0.190362 0.132646 0.170373 0.506619 0.174803 0.192852 0.156858 0.475488 0.221693 0.133379 0.306363 0.338566 0.260583 0.257473 0.208488 0.273456 Consensus sequence: DVVTTTGTTTACDTHDH Alignment: HDHADGTAAACAAAVVH ---AAAAAAACAAARRA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_primary Reverse Complement Original Motif Backward 1 14 0.043917 Species: Mus musculus Original motif 0.335487 0.205062 0.128957 0.330494 0.411635 0.179625 0.175701 0.233038 0.412976 0.128602 0.091890 0.366532 0.608396 0.079002 0.107142 0.205460 0.433474 0.035203 0.153143 0.378180 0.087552 0.005003 0.894586 0.012858 0.004459 0.038951 0.001109 0.955481 0.924470 0.068560 0.001165 0.005805 0.920483 0.070039 0.001674 0.007805 0.988335 0.001902 0.003155 0.006608 0.001527 0.656726 0.002699 0.339047 0.987505 0.001810 0.004336 0.006349 0.719584 0.065184 0.050384 0.164848 0.535389 0.099997 0.102849 0.261764 0.245215 0.272017 0.301499 0.181269 0.306107 0.209040 0.248687 0.236166 0.223744 0.278668 0.251931 0.245657 Consensus sequence: HHWAWGTAAAYAAAVDB Reverse complement motif 0.223744 0.251931 0.278668 0.245657 0.236166 0.209040 0.248687 0.306107 0.245215 0.301499 0.272017 0.181269 0.261764 0.099997 0.102849 0.535389 0.164848 0.065184 0.050384 0.719584 0.006349 0.001810 0.004336 0.987505 0.001527 0.002699 0.656726 0.339047 0.006608 0.001902 0.003155 0.988335 0.007805 0.070039 0.001674 0.920483 0.005805 0.068560 0.001165 0.924470 0.955481 0.038951 0.001109 0.004459 0.087552 0.894586 0.005003 0.012858 0.378180 0.035203 0.153143 0.433474 0.205460 0.079002 0.107142 0.608396 0.366532 0.128602 0.091890 0.412976 0.233038 0.179625 0.175701 0.411635 0.330494 0.205062 0.128957 0.335487 Consensus sequence: BDVTTTKTTTACWTWHH Alignment: HHWAWGTAAAYAAAVDB ---AAAAAAACAAARRA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 27 Motif name: Motif 27 Original motif 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.636364 0.000000 0.363636 0.727273 0.000000 0.272727 0.000000 0.181818 0.818182 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.909091 0.000000 0.090909 1.000000 0.000000 0.000000 0.000000 0.000000 0.909091 0.000000 0.090909 0.909091 0.000000 0.000000 0.090909 0.000000 1.000000 0.000000 0.000000 0.818182 0.000000 0.000000 0.181818 0.000000 0.909091 0.000000 0.090909 0.909091 0.000000 0.000000 0.090909 Consensus sequence: CAYACACACACACA Reserve complement motif 0.090909 0.000000 0.000000 0.909091 0.000000 0.000000 0.909091 0.090909 0.181818 0.000000 0.000000 0.818182 0.000000 0.000000 1.000000 0.000000 0.090909 0.000000 0.000000 0.909091 0.000000 0.000000 0.909091 0.090909 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.909091 0.090909 0.000000 0.000000 0.000000 1.000000 0.181818 0.000000 0.818182 0.000000 0.000000 0.000000 0.272727 0.727273 0.000000 0.000000 0.636364 0.363636 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: TGTGTGTGTGTKTG ************************************************************************ Best Matches for Motif ID 27 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_second Original Motif Original Motif Backward 2 14 0.023504 Species: Mus musculus Original motif 0.360404 0.193218 0.248888 0.197490 0.286498 0.224597 0.426555 0.062349 0.347032 0.440548 0.033161 0.179259 0.337062 0.193658 0.385751 0.083529 0.108793 0.005723 0.878300 0.007184 0.015151 0.973406 0.009324 0.002118 0.972117 0.003915 0.019783 0.004185 0.010144 0.980912 0.003106 0.005839 0.974864 0.007532 0.015914 0.001691 0.012441 0.939195 0.029256 0.019108 0.759620 0.106164 0.073819 0.060397 0.157234 0.818234 0.007449 0.017083 0.050076 0.063608 0.505171 0.381144 0.131903 0.538163 0.124608 0.205325 0.367623 0.286526 0.240931 0.104919 0.357798 0.317606 0.097711 0.226885 Consensus sequence: DVMVGCACACACKCVH Reverse complement motif 0.226885 0.317606 0.097711 0.357798 0.104919 0.286526 0.240931 0.367623 0.131903 0.124608 0.538163 0.205325 0.050076 0.505171 0.063608 0.381144 0.157234 0.007449 0.818234 0.017083 0.060397 0.106164 0.073819 0.759620 0.012441 0.029256 0.939195 0.019108 0.001691 0.007532 0.015914 0.974864 0.010144 0.003106 0.980912 0.005839 0.004185 0.003915 0.019783 0.972117 0.015151 0.009324 0.973406 0.002118 0.108793 0.878300 0.005723 0.007184 0.337062 0.385751 0.193658 0.083529 0.347032 0.033161 0.440548 0.179259 0.286498 0.426555 0.224597 0.062349 0.197490 0.193218 0.248888 0.360404 Consensus sequence: HBGYGTGTGTGCVRVD Alignment: DVMVGCACACACKCVH -CAYACACACACACA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00026 Zscan4_secondary Reverse Complement Reverse Complement Forward 2 14 0.037261 Species: Mus musculus Original motif 0.275231 0.387763 0.112851 0.224155 0.269193 0.327669 0.360934 0.042204 0.439403 0.233641 0.022359 0.304596 0.409796 0.139856 0.390450 0.059899 0.038409 0.011231 0.936209 0.014150 0.067382 0.909014 0.021244 0.002359 0.962897 0.009563 0.009687 0.017854 0.043757 0.937596 0.007648 0.010999 0.970698 0.005379 0.016825 0.007098 0.066033 0.636556 0.043955 0.253456 0.797406 0.066726 0.011988 0.123879 0.774632 0.121694 0.017773 0.085901 0.324017 0.235408 0.213365 0.227210 0.365796 0.192247 0.134547 0.307410 0.299601 0.246867 0.098395 0.355137 0.328229 0.242048 0.251143 0.178579 Consensus sequence: HVHRGCACACAAHHHV Reverse complement motif 0.178579 0.242048 0.251143 0.328229 0.355137 0.246867 0.098395 0.299601 0.307410 0.192247 0.134547 0.365796 0.227210 0.235408 0.213365 0.324017 0.085901 0.121694 0.017773 0.774632 0.123879 0.066726 0.011988 0.797406 0.066033 0.043955 0.636556 0.253456 0.007098 0.005379 0.016825 0.970698 0.043757 0.007648 0.937596 0.010999 0.017854 0.009563 0.009687 0.962897 0.067382 0.021244 0.909014 0.002359 0.038409 0.936209 0.011231 0.014150 0.059899 0.139856 0.390450 0.409796 0.304596 0.233641 0.022359 0.439403 0.269193 0.360934 0.327669 0.042204 0.275231 0.112851 0.387763 0.224155 Consensus sequence: BHHHTTGTGTGCKHVD Alignment: BHHHTTGTGTGCKHVD -TGTGTGTGTGTKTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_primary Reverse Complement Reverse Complement Forward 4 14 0.044637 Species: Mus musculus Original motif 0.282316 0.413385 0.114930 0.189369 0.341654 0.135011 0.267943 0.255392 0.399523 0.173081 0.168845 0.258551 0.365086 0.196360 0.211856 0.226699 0.243321 0.177839 0.224206 0.354635 0.029873 0.808479 0.036309 0.125339 0.004945 0.815465 0.040635 0.138955 0.934557 0.058944 0.005027 0.001471 0.005099 0.003998 0.986148 0.004755 0.969304 0.020594 0.001929 0.008173 0.008189 0.984816 0.004199 0.002795 0.669579 0.012182 0.282153 0.036085 0.130511 0.171241 0.334041 0.364207 0.198982 0.289660 0.252392 0.258966 0.423172 0.190978 0.164411 0.221440 0.213519 0.287388 0.294414 0.204679 0.371956 0.285061 0.150191 0.192792 Consensus sequence: HDHDDCCAGACABBHVH Reverse complement motif 0.192792 0.285061 0.150191 0.371956 0.213519 0.294414 0.287388 0.204679 0.221440 0.190978 0.164411 0.423172 0.198982 0.252392 0.289660 0.258966 0.364207 0.171241 0.334041 0.130511 0.036085 0.012182 0.282153 0.669579 0.008189 0.004199 0.984816 0.002795 0.008173 0.020594 0.001929 0.969304 0.005099 0.986148 0.003998 0.004755 0.001471 0.058944 0.005027 0.934557 0.004945 0.040635 0.815465 0.138955 0.029873 0.036309 0.808479 0.125339 0.354635 0.177839 0.224206 0.243321 0.226699 0.196360 0.211856 0.365086 0.258551 0.173081 0.168845 0.399523 0.255392 0.135011 0.267943 0.341654 0.282316 0.114930 0.413385 0.189369 Consensus sequence: HVHBVTGTCTGGDDHDD Alignment: HVHBVTGTCTGGDDHDD ---TGTGTGTGTGTKTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Original Motif Forward 4 14 0.045717 Species: Mus musculus Original motif 0.104824 0.412716 0.254506 0.227955 0.644922 0.065476 0.140479 0.149122 0.201205 0.166164 0.347131 0.285501 0.360606 0.256316 0.150766 0.232313 0.199831 0.240681 0.279350 0.280137 0.234308 0.204076 0.321306 0.240310 0.274112 0.462435 0.111425 0.152028 0.067070 0.717501 0.073934 0.141496 0.106745 0.084442 0.658566 0.150247 0.025128 0.967053 0.003585 0.004234 0.006412 0.982989 0.003227 0.007371 0.009588 0.877620 0.002571 0.110221 0.621521 0.355443 0.015669 0.007366 0.002600 0.980275 0.004191 0.012934 0.118773 0.026658 0.783843 0.070725 0.022358 0.822101 0.024684 0.130857 0.713212 0.080912 0.128793 0.077084 0.166568 0.250955 0.107934 0.474544 0.225040 0.222494 0.163301 0.389166 0.268976 0.223206 0.265314 0.242504 0.137052 0.229058 0.148439 0.485451 0.135819 0.304550 0.141994 0.417637 0.272440 0.319501 0.230580 0.177478 Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Reverse complement motif 0.272440 0.230580 0.319501 0.177478 0.417637 0.304550 0.141994 0.135819 0.485451 0.229058 0.148439 0.137052 0.242504 0.223206 0.265314 0.268976 0.389166 0.222494 0.163301 0.225040 0.474544 0.250955 0.107934 0.166568 0.077084 0.080912 0.128793 0.713212 0.022358 0.024684 0.822101 0.130857 0.118773 0.783843 0.026658 0.070725 0.002600 0.004191 0.980275 0.012934 0.007366 0.355443 0.015669 0.621521 0.009588 0.002571 0.877620 0.110221 0.006412 0.003227 0.982989 0.007371 0.025128 0.003585 0.967053 0.004234 0.106745 0.658566 0.084442 0.150247 0.067070 0.073934 0.717501 0.141496 0.274112 0.111425 0.462435 0.152028 0.234308 0.321306 0.204076 0.240310 0.280137 0.240681 0.279350 0.199831 0.232313 0.256316 0.150766 0.360606 0.201205 0.347131 0.166164 0.285501 0.149122 0.065476 0.140479 0.644922 0.104824 0.254506 0.412716 0.227955 Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB Alignment: BADHBDHCGCCCMCGCAHHDBBV ---CAYACACACACACA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Original Motif Reverse Complement Forward 1 14 0.047722 Species: Mus musculus Original motif 0.067627 0.131333 0.654425 0.146615 0.156488 0.114442 0.145630 0.583441 0.206450 0.265630 0.358017 0.169903 0.090729 0.460713 0.274712 0.173847 0.285994 0.099998 0.154485 0.459523 0.635908 0.184787 0.072982 0.106323 0.748421 0.039204 0.092605 0.119769 0.081342 0.061327 0.044532 0.812799 0.143120 0.043879 0.024216 0.788785 0.247544 0.092102 0.621453 0.038901 0.295531 0.036295 0.027594 0.640580 0.194561 0.305468 0.339916 0.160055 0.175038 0.193568 0.101212 0.530182 0.145226 0.167488 0.559871 0.127415 0.271501 0.237429 0.206701 0.284369 0.216834 0.109191 0.569605 0.104370 0.182624 0.177160 0.300475 0.339742 0.331737 0.198645 0.265137 0.204482 0.230155 0.359365 0.183450 0.227029 0.056581 0.067297 0.463052 0.413070 0.198891 0.324626 0.304424 0.172059 0.181968 0.287547 0.202419 0.328066 Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Reverse complement motif 0.328066 0.287547 0.202419 0.181968 0.198891 0.304424 0.324626 0.172059 0.056581 0.463052 0.067297 0.413070 0.230155 0.183450 0.359365 0.227029 0.204482 0.198645 0.265137 0.331737 0.339742 0.177160 0.300475 0.182624 0.216834 0.569605 0.109191 0.104370 0.284369 0.237429 0.206701 0.271501 0.145226 0.559871 0.167488 0.127415 0.530182 0.193568 0.101212 0.175038 0.194561 0.339916 0.305468 0.160055 0.640580 0.036295 0.027594 0.295531 0.247544 0.621453 0.092102 0.038901 0.788785 0.043879 0.024216 0.143120 0.812799 0.061327 0.044532 0.081342 0.119769 0.039204 0.092605 0.748421 0.106323 0.184787 0.072982 0.635908 0.459523 0.099998 0.154485 0.285994 0.090729 0.274712 0.460713 0.173847 0.206450 0.358017 0.265630 0.169903 0.583441 0.114442 0.145630 0.156488 0.067627 0.654425 0.131333 0.146615 Consensus sequence: VVYDDDCHCAVACAATTDBVAC Alignment: GTVBDAATTGTVTGHGDDHKVB CAYACACACACACA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_secondary Reverse Complement Reverse Complement Backward 1 14 0.048548 Species: Mus musculus Original motif 0.240753 0.425595 0.141281 0.192371 0.367715 0.247224 0.117353 0.267708 0.489169 0.220343 0.113844 0.176644 0.742256 0.042809 0.146704 0.068231 0.078936 0.546144 0.032328 0.342592 0.588419 0.293580 0.082117 0.035885 0.913924 0.026256 0.050778 0.009042 0.009007 0.565680 0.010683 0.414630 0.947562 0.020878 0.018821 0.012739 0.901384 0.021519 0.030204 0.046893 0.077157 0.797900 0.026432 0.098511 0.824314 0.040128 0.051910 0.083648 0.254436 0.342235 0.143789 0.259539 0.319400 0.338163 0.129746 0.212691 0.231014 0.260719 0.169042 0.339225 Consensus sequence: HHHAYAAYAACAHHH Reverse complement motif 0.339225 0.260719 0.169042 0.231014 0.319400 0.129746 0.338163 0.212691 0.254436 0.143789 0.342235 0.259539 0.083648 0.040128 0.051910 0.824314 0.077157 0.026432 0.797900 0.098511 0.046893 0.021519 0.030204 0.901384 0.012739 0.020878 0.018821 0.947562 0.009007 0.010683 0.565680 0.414630 0.009042 0.026256 0.050778 0.913924 0.035885 0.293580 0.082117 0.588419 0.078936 0.032328 0.546144 0.342592 0.068231 0.042809 0.146704 0.742256 0.176644 0.220343 0.113844 0.489169 0.267708 0.247224 0.117353 0.367715 0.240753 0.141281 0.425595 0.192371 Consensus sequence: HDDTGTTKTTKTHHD Alignment: HDDTGTTKTTKTHHD -TGTGTGTGTGTKTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00041 Foxj1_primary Original Motif Original Motif Backward 3 14 0.048863 Species: Mus musculus Original motif 0.446042 0.209997 0.124191 0.219770 0.271534 0.218131 0.245258 0.265077 0.368646 0.184693 0.168482 0.278180 0.348384 0.034204 0.583335 0.034077 0.040365 0.085618 0.013162 0.860855 0.824790 0.156631 0.004063 0.014515 0.835134 0.069381 0.003505 0.091980 0.967572 0.009280 0.006259 0.016890 0.009507 0.909577 0.004492 0.076424 0.947956 0.006994 0.008177 0.036873 0.599204 0.170666 0.065622 0.164508 0.708795 0.035865 0.070557 0.184782 0.303191 0.287145 0.184748 0.224917 0.285550 0.184167 0.248662 0.281621 0.235315 0.210836 0.254428 0.299421 0.220038 0.158539 0.286552 0.334871 Consensus sequence: HDHRTAAACAAAHDDD Reverse complement motif 0.334871 0.158539 0.286552 0.220038 0.299421 0.210836 0.254428 0.235315 0.281621 0.184167 0.248662 0.285550 0.224917 0.287145 0.184748 0.303191 0.184782 0.035865 0.070557 0.708795 0.164508 0.170666 0.065622 0.599204 0.036873 0.006994 0.008177 0.947956 0.009507 0.004492 0.909577 0.076424 0.016890 0.009280 0.006259 0.967572 0.091980 0.069381 0.003505 0.835134 0.014515 0.156631 0.004063 0.824790 0.860855 0.085618 0.013162 0.040365 0.348384 0.583335 0.034204 0.034077 0.278180 0.184693 0.168482 0.368646 0.265077 0.218131 0.245258 0.271534 0.219770 0.209997 0.124191 0.446042 Consensus sequence: DDDHTTTGTTTAMHDH Alignment: HDHRTAAACAAAHDDD CAYACACACACACA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00026 Zscan4_primary Original Motif Original Motif Backward 2 14 0.048960 Species: Mus musculus Original motif 0.203927 0.157260 0.307071 0.331743 0.360341 0.265216 0.147327 0.227115 0.251195 0.298806 0.241051 0.208949 0.487186 0.122472 0.214362 0.175980 0.122838 0.051062 0.055773 0.770327 0.020467 0.009992 0.965816 0.003725 0.005887 0.026663 0.006808 0.960643 0.030656 0.002167 0.965099 0.002078 0.002078 0.965099 0.002167 0.030656 0.960643 0.006808 0.026663 0.005887 0.003725 0.965816 0.009992 0.020467 0.770327 0.055773 0.051062 0.122838 0.044808 0.382307 0.042920 0.529965 0.751320 0.047417 0.044482 0.156781 0.362742 0.228898 0.085373 0.322987 0.436635 0.111479 0.217284 0.234601 0.303930 0.285374 0.195872 0.214824 Consensus sequence: DHVDTGTGCACAYAHDH Reverse complement motif 0.214824 0.285374 0.195872 0.303930 0.234601 0.111479 0.217284 0.436635 0.322987 0.228898 0.085373 0.362742 0.156781 0.047417 0.044482 0.751320 0.529965 0.382307 0.042920 0.044808 0.122838 0.055773 0.051062 0.770327 0.003725 0.009992 0.965816 0.020467 0.005887 0.006808 0.026663 0.960643 0.002078 0.002167 0.965099 0.030656 0.030656 0.965099 0.002167 0.002078 0.960643 0.026663 0.006808 0.005887 0.020467 0.965816 0.009992 0.003725 0.770327 0.051062 0.055773 0.122838 0.175980 0.122472 0.214362 0.487186 0.251195 0.241051 0.298806 0.208949 0.227115 0.265216 0.147327 0.360341 0.331743 0.157260 0.307071 0.203927 Consensus sequence: HDHTMTGTGCACADVHD Alignment: DHVDTGTGCACAYAHDH --CAYACACACACACA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Reverse Complement Original Motif Backward 10 14 0.050113 Species: Mus musculus Original motif 0.319838 0.171199 0.138099 0.370865 0.269358 0.196600 0.346909 0.187133 0.176807 0.338888 0.193903 0.290402 0.230268 0.119645 0.310500 0.339587 0.517372 0.257658 0.111673 0.113296 0.159477 0.126524 0.561119 0.152879 0.117072 0.553013 0.130919 0.198996 0.073372 0.163548 0.525014 0.238066 0.143608 0.186896 0.170528 0.498967 0.054943 0.079034 0.722992 0.143031 0.048852 0.015134 0.852458 0.083556 0.029001 0.023938 0.918900 0.028160 0.036727 0.092645 0.090591 0.780037 0.017757 0.057598 0.895222 0.029423 0.026113 0.048113 0.879744 0.046030 0.023041 0.787043 0.123490 0.066426 0.579766 0.004868 0.296873 0.118493 0.303862 0.042931 0.290151 0.363055 0.099672 0.237431 0.262301 0.400597 0.217788 0.163908 0.367628 0.250676 0.450783 0.141108 0.226137 0.181972 0.485086 0.102553 0.242662 0.169700 0.109057 0.454222 0.145665 0.291056 Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Reverse complement motif 0.109057 0.145665 0.454222 0.291056 0.169700 0.102553 0.242662 0.485086 0.181972 0.141108 0.226137 0.450783 0.217788 0.367628 0.163908 0.250676 0.400597 0.237431 0.262301 0.099672 0.363055 0.042931 0.290151 0.303862 0.118493 0.004868 0.296873 0.579766 0.023041 0.123490 0.787043 0.066426 0.026113 0.879744 0.048113 0.046030 0.017757 0.895222 0.057598 0.029423 0.780037 0.092645 0.090591 0.036727 0.029001 0.918900 0.023938 0.028160 0.048852 0.852458 0.015134 0.083556 0.054943 0.722992 0.079034 0.143031 0.498967 0.186896 0.170528 0.143608 0.073372 0.525014 0.163548 0.238066 0.117072 0.130919 0.553013 0.198996 0.159477 0.561119 0.126524 0.152879 0.113296 0.257658 0.111673 0.517372 0.339587 0.119645 0.310500 0.230268 0.176807 0.193903 0.338888 0.290402 0.269358 0.346909 0.196600 0.187133 0.370865 0.171199 0.138099 0.319838 Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB TGTGTGTGTGTKTG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_primary Original Motif Original Motif Backward 2 14 0.051895 Species: Mus musculus Original motif 0.338172 0.192194 0.207817 0.261817 0.407924 0.117261 0.278236 0.196580 0.595570 0.070480 0.119221 0.214729 0.710845 0.038748 0.052600 0.197807 0.124647 0.116138 0.178053 0.581162 0.201602 0.005514 0.792110 0.000774 0.024590 0.004193 0.001331 0.969886 0.919465 0.077871 0.000760 0.001904 0.972342 0.010395 0.000580 0.016683 0.991045 0.001495 0.003585 0.003875 0.001358 0.885197 0.000980 0.112465 0.990318 0.001846 0.002968 0.004867 0.804563 0.063147 0.023496 0.108795 0.564824 0.087976 0.102865 0.244336 0.269947 0.300278 0.285008 0.144767 0.337905 0.220102 0.253694 0.188299 0.153781 0.274135 0.318343 0.253741 Consensus sequence: DDAATGTAAACAAAVVB Reverse complement motif 0.153781 0.318343 0.274135 0.253741 0.188299 0.220102 0.253694 0.337905 0.269947 0.285008 0.300278 0.144767 0.244336 0.087976 0.102865 0.564824 0.108795 0.063147 0.023496 0.804563 0.004867 0.001846 0.002968 0.990318 0.001358 0.000980 0.885197 0.112465 0.003875 0.001495 0.003585 0.991045 0.016683 0.010395 0.000580 0.972342 0.001904 0.077871 0.000760 0.919465 0.969886 0.004193 0.001331 0.024590 0.201602 0.792110 0.005514 0.000774 0.581162 0.116138 0.178053 0.124647 0.197807 0.038748 0.052600 0.710845 0.214729 0.070480 0.119221 0.595570 0.196580 0.117261 0.278236 0.407924 0.261817 0.192194 0.207817 0.338172 Consensus sequence: BBVTTTGTTTACATTDD Alignment: DDAATGTAAACAAAVVB --CAYACACACACACA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 28 Motif name: Zfx Original motif 0.105042 0.371849 0.376050 0.147059 0.125786 0.356394 0.360587 0.157233 0.190377 0.315900 0.416318 0.077406 0.150313 0.102296 0.622129 0.125261 0.020790 0.617464 0.299376 0.062370 0.012474 0.752599 0.004158 0.230769 0.062370 0.259875 0.378378 0.299376 0.397089 0.320166 0.251559 0.031185 0.018711 0.004158 0.975052 0.002079 0.000000 0.006237 0.991684 0.002079 0.002079 0.997921 0.000000 0.000000 0.000000 0.997921 0.000000 0.002079 0.000000 0.004158 0.000000 0.995842 0.174636 0.253638 0.455301 0.116424 Consensus sequence: BBVGCCBVGGCCTV Reserve complement motif 0.174636 0.455301 0.253638 0.116424 0.995842 0.004158 0.000000 0.000000 0.000000 0.000000 0.997921 0.002079 0.002079 0.000000 0.997921 0.000000 0.000000 0.991684 0.006237 0.002079 0.018711 0.975052 0.004158 0.002079 0.031185 0.320166 0.251559 0.397089 0.062370 0.378378 0.259875 0.299376 0.012474 0.004158 0.752599 0.230769 0.020790 0.299376 0.617464 0.062370 0.150313 0.622129 0.102296 0.125261 0.190377 0.416318 0.315900 0.077406 0.125786 0.360587 0.356394 0.157233 0.105042 0.376050 0.371849 0.147059 Consensus sequence: VAGGCCBBGGCVBB ************************************************************************ Best Matches for Motif ID 28 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_secondary Original Motif Original Motif Forward 1 14 0.059614 Species: Mus musculus Original motif 0.198427 0.243196 0.159241 0.399136 0.267754 0.388187 0.116811 0.227248 0.448284 0.056403 0.414623 0.080691 0.031469 0.826323 0.055436 0.086772 0.035527 0.756642 0.022985 0.184845 0.127338 0.316078 0.155806 0.400778 0.135021 0.313650 0.287760 0.263570 0.418892 0.082297 0.068352 0.430460 0.201062 0.044735 0.711358 0.042845 0.038934 0.022320 0.903763 0.034982 0.201790 0.065554 0.460526 0.272130 0.006890 0.786923 0.061853 0.144334 0.460666 0.103658 0.196452 0.239224 0.092272 0.204611 0.390375 0.312742 Consensus sequence: HHRCCBBWGGDCDB Reverse complement motif 0.092272 0.390375 0.204611 0.312742 0.239224 0.103658 0.196452 0.460666 0.006890 0.061853 0.786923 0.144334 0.201790 0.460526 0.065554 0.272130 0.038934 0.903763 0.022320 0.034982 0.201062 0.711358 0.044735 0.042845 0.430460 0.082297 0.068352 0.418892 0.135021 0.287760 0.313650 0.263570 0.400778 0.316078 0.155806 0.127338 0.035527 0.022985 0.756642 0.184845 0.031469 0.055436 0.826323 0.086772 0.080691 0.056403 0.414623 0.448284 0.267754 0.116811 0.388187 0.227248 0.399136 0.243196 0.159241 0.198427 Consensus sequence: BDGHCCWBVGGKDH Alignment: HHRCCBBWGGDCDB BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primary Original Motif Original Motif Forward 1 14 0.060352 Species: Mus musculus Original motif 0.641428 0.180211 0.044767 0.133594 0.171696 0.262981 0.334148 0.231174 0.129726 0.322735 0.243462 0.304077 0.165713 0.175735 0.256108 0.402445 0.146090 0.171890 0.412753 0.269266 0.212837 0.439192 0.280990 0.066980 0.251088 0.275516 0.374380 0.099015 0.575438 0.079656 0.338201 0.006704 0.005634 0.003422 0.972597 0.018348 0.890447 0.077034 0.031851 0.000668 0.007128 0.986862 0.000496 0.005515 0.001445 0.991564 0.001925 0.005066 0.738761 0.190157 0.026399 0.044684 0.013384 0.983783 0.000896 0.001937 0.068077 0.929549 0.000773 0.001602 0.040830 0.933742 0.005283 0.020145 0.730274 0.029225 0.145689 0.094812 0.165032 0.572838 0.162001 0.100129 0.383584 0.129942 0.429497 0.056977 0.455959 0.071959 0.208204 0.263878 0.134271 0.262985 0.222626 0.380117 0.071193 0.346594 0.346081 0.236132 0.445661 0.405278 0.053901 0.095160 Consensus sequence: ABBBBVVRGACCACCCACRDBBM Reverse complement motif 0.095160 0.405278 0.053901 0.445661 0.071193 0.346081 0.346594 0.236132 0.380117 0.262985 0.222626 0.134271 0.263878 0.071959 0.208204 0.455959 0.383584 0.429497 0.129942 0.056977 0.165032 0.162001 0.572838 0.100129 0.094812 0.029225 0.145689 0.730274 0.040830 0.005283 0.933742 0.020145 0.068077 0.000773 0.929549 0.001602 0.013384 0.000896 0.983783 0.001937 0.044684 0.190157 0.026399 0.738761 0.001445 0.001925 0.991564 0.005066 0.007128 0.000496 0.986862 0.005515 0.000668 0.077034 0.031851 0.890447 0.005634 0.972597 0.003422 0.018348 0.006704 0.079656 0.338201 0.575438 0.251088 0.374380 0.275516 0.099015 0.212837 0.280990 0.439192 0.066980 0.146090 0.412753 0.171890 0.269266 0.402445 0.175735 0.256108 0.165713 0.129726 0.243462 0.322735 0.304077 0.171696 0.334148 0.262981 0.231174 0.133594 0.180211 0.044767 0.641428 Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT Alignment: ABBBBVVRGACCACCCACRDBBM BBVGCCBVGGCCTV--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Reverse Complement Original Motif Forward 4 14 0.060469 Species: Mus musculus Original motif 0.155386 0.223380 0.374454 0.246780 0.247106 0.159582 0.345111 0.248201 0.238889 0.258354 0.165304 0.337454 0.255612 0.489586 0.051621 0.203182 0.450100 0.545383 0.001071 0.003447 0.003704 0.991007 0.002456 0.002833 0.035504 0.001814 0.928129 0.034553 0.001494 0.991406 0.003414 0.003686 0.003045 0.990628 0.005182 0.001145 0.000990 0.963237 0.001215 0.034557 0.148016 0.838396 0.000666 0.012922 0.014261 0.905847 0.007200 0.072692 0.083394 0.270068 0.058368 0.588170 0.149141 0.286783 0.142802 0.421274 0.204851 0.347195 0.253356 0.194597 0.184442 0.299908 0.194408 0.321242 0.125793 0.380109 0.245318 0.248780 Consensus sequence: BDHHMCGCCCCCTHVBB Reverse complement motif 0.125793 0.245318 0.380109 0.248780 0.321242 0.299908 0.194408 0.184442 0.204851 0.253356 0.347195 0.194597 0.421274 0.286783 0.142802 0.149141 0.588170 0.270068 0.058368 0.083394 0.014261 0.007200 0.905847 0.072692 0.148016 0.000666 0.838396 0.012922 0.000990 0.001215 0.963237 0.034557 0.003045 0.005182 0.990628 0.001145 0.001494 0.003414 0.991406 0.003686 0.035504 0.928129 0.001814 0.034553 0.003704 0.002456 0.991007 0.002833 0.450100 0.001071 0.545383 0.003447 0.255612 0.051621 0.489586 0.203182 0.337454 0.258354 0.165304 0.238889 0.247106 0.345111 0.159582 0.248201 0.155386 0.374454 0.223380 0.246780 Consensus sequence: BVVHAGGGGGCGRDHHB Alignment: BDHHMCGCCCCCTHVBB ---VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Original Motif Backward 3 14 0.060607 Species: Mus musculus Original motif 0.204514 0.198353 0.171218 0.425915 0.167188 0.296785 0.246082 0.289946 0.267330 0.148001 0.398674 0.185994 0.549386 0.060167 0.337100 0.053347 0.050746 0.900013 0.022169 0.027073 0.037905 0.920332 0.008360 0.033403 0.410356 0.566702 0.016267 0.006675 0.009526 0.982354 0.001060 0.007060 0.204292 0.001084 0.748567 0.046056 0.003955 0.988490 0.002821 0.004735 0.004264 0.988826 0.004311 0.002598 0.002758 0.929549 0.001244 0.066448 0.260332 0.421683 0.024720 0.293265 0.184798 0.247697 0.085237 0.482268 0.347537 0.197344 0.139961 0.315159 0.255281 0.166620 0.242297 0.335802 Consensus sequence: HBDRCCMCGCCCHHHD Reverse complement motif 0.335802 0.166620 0.242297 0.255281 0.315159 0.197344 0.139961 0.347537 0.482268 0.247697 0.085237 0.184798 0.260332 0.024720 0.421683 0.293265 0.002758 0.001244 0.929549 0.066448 0.004264 0.004311 0.988826 0.002598 0.003955 0.002821 0.988490 0.004735 0.204292 0.748567 0.001084 0.046056 0.009526 0.001060 0.982354 0.007060 0.410356 0.016267 0.566702 0.006675 0.037905 0.008360 0.920332 0.033403 0.050746 0.022169 0.900013 0.027073 0.053347 0.060167 0.337100 0.549386 0.267330 0.398674 0.148001 0.185994 0.167188 0.246082 0.296785 0.289946 0.425915 0.198353 0.171218 0.204514 Consensus sequence: DHHDGGGCGRGGKHBH Alignment: HBDRCCMCGCCCHHHD BBVGCCBVGGCCTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Reverse Complement Original Motif Forward 9 14 0.060688 Species: Mus musculus Original motif 0.331499 0.188505 0.182841 0.297156 0.328961 0.213025 0.273530 0.184484 0.197213 0.129292 0.524914 0.148581 0.274491 0.226406 0.312118 0.186986 0.103231 0.393726 0.364988 0.138055 0.552594 0.166422 0.186262 0.094722 0.157618 0.064773 0.616497 0.161112 0.139166 0.176098 0.621185 0.063551 0.748420 0.062398 0.012447 0.176735 0.116584 0.009438 0.860326 0.013653 0.005030 0.003646 0.974877 0.016447 0.055257 0.007181 0.921760 0.015802 0.032748 0.058249 0.052709 0.856293 0.105606 0.872231 0.014370 0.007793 0.019480 0.497379 0.125899 0.357242 0.478582 0.269713 0.061464 0.190242 0.253985 0.287006 0.201320 0.257689 0.319384 0.210231 0.175842 0.294543 0.222123 0.287802 0.201294 0.288782 0.139951 0.376041 0.081133 0.402875 0.213450 0.343835 0.383676 0.059039 0.322294 0.355918 0.148062 0.173725 Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Reverse complement motif 0.322294 0.148062 0.355918 0.173725 0.213450 0.383676 0.343835 0.059039 0.402875 0.376041 0.081133 0.139951 0.288782 0.287802 0.201294 0.222123 0.294543 0.210231 0.175842 0.319384 0.253985 0.201320 0.287006 0.257689 0.190242 0.269713 0.061464 0.478582 0.019480 0.125899 0.497379 0.357242 0.105606 0.014370 0.872231 0.007793 0.856293 0.058249 0.052709 0.032748 0.055257 0.921760 0.007181 0.015802 0.005030 0.974877 0.003646 0.016447 0.116584 0.860326 0.009438 0.013653 0.176735 0.062398 0.012447 0.748420 0.139166 0.621185 0.176098 0.063551 0.157618 0.616497 0.064773 0.161112 0.094722 0.166422 0.186262 0.552594 0.103231 0.364988 0.393726 0.138055 0.274491 0.312118 0.226406 0.186986 0.197213 0.524914 0.129292 0.148581 0.184484 0.213025 0.273530 0.328961 0.297156 0.188505 0.182841 0.331499 Consensus sequence: DVMHHDHKGACCCTCCTSVCBH Alignment: HVGVSAGGAGGGTCYHHHHYVH --------VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00087 Tcfap2c_secondary Reverse Complement Reverse Complement Forward 1 14 0.060806 Species: Mus musculus Original motif 0.203043 0.348071 0.227399 0.221487 0.179291 0.396392 0.144383 0.279934 0.093421 0.033540 0.859005 0.014034 0.181373 0.693724 0.031481 0.093422 0.019065 0.840720 0.011622 0.128593 0.197421 0.501100 0.087606 0.213873 0.457286 0.063305 0.239499 0.239911 0.508984 0.143325 0.116228 0.231463 0.213873 0.087606 0.501100 0.197421 0.128593 0.011622 0.840720 0.019065 0.093422 0.031481 0.693724 0.181373 0.014034 0.859005 0.033540 0.093421 0.477741 0.059425 0.165356 0.297478 0.278658 0.136011 0.311291 0.274039 Consensus sequence: BHGCCCDAGGGCWD Reverse complement motif 0.278658 0.311291 0.136011 0.274039 0.297478 0.059425 0.165356 0.477741 0.014034 0.033540 0.859005 0.093421 0.093422 0.693724 0.031481 0.181373 0.128593 0.840720 0.011622 0.019065 0.213873 0.501100 0.087606 0.197421 0.231463 0.143325 0.116228 0.508984 0.239911 0.063305 0.239499 0.457286 0.197421 0.087606 0.501100 0.213873 0.019065 0.011622 0.840720 0.128593 0.181373 0.031481 0.693724 0.093422 0.093421 0.859005 0.033540 0.014034 0.179291 0.144383 0.396392 0.279934 0.203043 0.227399 0.348071 0.221487 Consensus sequence: HWGCCCTDGGGCDB Alignment: HWGCCCTDGGGCDB VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Original Motif Original Motif Forward 5 14 0.061500 Species: Mus musculus Original motif 0.214165 0.143436 0.372522 0.269876 0.314445 0.406003 0.160351 0.119201 0.137147 0.092924 0.042921 0.727007 0.044121 0.072843 0.051741 0.831295 0.261292 0.324124 0.298498 0.116086 0.258125 0.323243 0.263362 0.155271 0.204557 0.589399 0.107153 0.098891 0.371021 0.244027 0.291102 0.093849 0.096327 0.572718 0.011797 0.319159 0.027282 0.046183 0.844519 0.082016 0.018921 0.012887 0.915917 0.052275 0.364793 0.166722 0.084229 0.384256 0.028216 0.011233 0.951056 0.009495 0.054974 0.004738 0.890377 0.049911 0.006802 0.312915 0.134247 0.546036 0.241289 0.628210 0.104788 0.025713 0.237863 0.302807 0.213018 0.246311 0.349399 0.203220 0.086635 0.360746 0.386634 0.144693 0.246895 0.221779 0.425101 0.354676 0.093374 0.126849 0.060272 0.391320 0.104905 0.443503 0.162090 0.190233 0.227433 0.420244 Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Reverse complement motif 0.420244 0.190233 0.227433 0.162090 0.443503 0.391320 0.104905 0.060272 0.126849 0.354676 0.093374 0.425101 0.221779 0.144693 0.246895 0.386634 0.360746 0.203220 0.086635 0.349399 0.237863 0.213018 0.302807 0.246311 0.241289 0.104788 0.628210 0.025713 0.546036 0.312915 0.134247 0.006802 0.054974 0.890377 0.004738 0.049911 0.028216 0.951056 0.011233 0.009495 0.384256 0.166722 0.084229 0.364793 0.018921 0.915917 0.012887 0.052275 0.027282 0.844519 0.046183 0.082016 0.096327 0.011797 0.572718 0.319159 0.093849 0.244027 0.291102 0.371021 0.204557 0.107153 0.589399 0.098891 0.258125 0.263362 0.323243 0.155271 0.261292 0.298498 0.324124 0.116086 0.831295 0.072843 0.051741 0.044121 0.727007 0.092924 0.042921 0.137147 0.314445 0.160351 0.406003 0.119201 0.214165 0.372522 0.143436 0.269876 Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH Alignment: DVTTVVCVYGGHGGYCHHDMYB ----BBVGCCBVGGCCTV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00010 Tcfap2b_secondary Original Motif Reverse Complement Forward 2 14 0.062429 Species: Mus musculus Original motif 0.325895 0.099601 0.286848 0.287657 0.177095 0.035123 0.260876 0.526906 0.344850 0.211117 0.015725 0.428308 0.128363 0.059965 0.777560 0.034112 0.048072 0.881624 0.024842 0.045462 0.072628 0.872650 0.011271 0.043451 0.057165 0.162157 0.347719 0.432959 0.015437 0.448405 0.428425 0.107733 0.446877 0.336374 0.099940 0.116809 0.090955 0.023004 0.848240 0.037801 0.040151 0.015072 0.901303 0.043473 0.087378 0.817019 0.027876 0.067727 0.532482 0.021469 0.266773 0.179276 0.325017 0.271661 0.138860 0.264463 0.203625 0.179490 0.143885 0.473001 Consensus sequence: DTWGCCKSMGGCRHH Reverse complement motif 0.473001 0.179490 0.143885 0.203625 0.264463 0.271661 0.138860 0.325017 0.179276 0.021469 0.266773 0.532482 0.087378 0.027876 0.817019 0.067727 0.040151 0.901303 0.015072 0.043473 0.090955 0.848240 0.023004 0.037801 0.116809 0.336374 0.099940 0.446877 0.015437 0.428425 0.448405 0.107733 0.432959 0.162157 0.347719 0.057165 0.072628 0.011271 0.872650 0.043451 0.048072 0.024842 0.881624 0.045462 0.128363 0.777560 0.059965 0.034112 0.428308 0.211117 0.015725 0.344850 0.526906 0.035123 0.260876 0.177095 0.287657 0.099601 0.286848 0.325895 Consensus sequence: HHKGCCYSRGGCWAD Alignment: HHKGCCYSRGGCWAD -BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00082 Zfp187_secondary Reverse Complement Original Motif Forward 1 14 0.062766 Species: Mus musculus Original motif 0.173063 0.169680 0.440836 0.216421 0.353277 0.179996 0.249403 0.217325 0.307337 0.038055 0.616380 0.038228 0.316636 0.564670 0.023732 0.094962 0.015484 0.923764 0.019439 0.041313 0.011243 0.956300 0.009443 0.023014 0.062273 0.107531 0.010739 0.819456 0.126670 0.201521 0.192005 0.479803 0.093090 0.045924 0.835792 0.025194 0.020165 0.015483 0.009567 0.954786 0.010873 0.672448 0.004559 0.312121 0.018002 0.846860 0.017605 0.117533 0.335703 0.408170 0.104095 0.152031 0.150308 0.362296 0.067408 0.419988 0.286490 0.242211 0.176532 0.294767 0.265022 0.249655 0.272219 0.213104 Consensus sequence: DDGMCCTBGTCCHYHV Reverse complement motif 0.265022 0.272219 0.249655 0.213104 0.294767 0.242211 0.176532 0.286490 0.419988 0.362296 0.067408 0.150308 0.335703 0.104095 0.408170 0.152031 0.018002 0.017605 0.846860 0.117533 0.010873 0.004559 0.672448 0.312121 0.954786 0.015483 0.009567 0.020165 0.093090 0.835792 0.045924 0.025194 0.479803 0.201521 0.192005 0.126670 0.819456 0.107531 0.010739 0.062273 0.011243 0.009443 0.956300 0.023014 0.015484 0.019439 0.923764 0.041313 0.316636 0.023732 0.564670 0.094962 0.307337 0.616380 0.038055 0.038228 0.217325 0.179996 0.249403 0.353277 0.173063 0.440836 0.169680 0.216421 Consensus sequence: VHMDGGACVAGGRCDH Alignment: DDGMCCTBGTCCHYHV VAGGCCBBGGCVBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_secondary Reverse Complement Reverse Complement Forward 3 14 0.063653 Species: Mus musculus Original motif 0.195749 0.435700 0.196915 0.171636 0.131070 0.131912 0.417834 0.319184 0.238959 0.441529 0.174973 0.144539 0.187749 0.189727 0.405849 0.216675 0.006751 0.541370 0.182092 0.269787 0.005388 0.590608 0.339869 0.064135 0.088153 0.004666 0.902351 0.004830 0.002459 0.004278 0.982637 0.010626 0.003618 0.002504 0.985275 0.008602 0.003325 0.004017 0.009244 0.983414 0.002547 0.972864 0.005345 0.019244 0.940260 0.002927 0.053632 0.003181 0.222459 0.390569 0.251497 0.135475 0.151824 0.258444 0.332866 0.256865 0.175811 0.290583 0.232086 0.301520 0.356690 0.198973 0.136050 0.308287 Consensus sequence: VBVBCSGGGTCAVBBH Reverse complement motif 0.308287 0.198973 0.136050 0.356690 0.301520 0.290583 0.232086 0.175811 0.151824 0.332866 0.258444 0.256865 0.222459 0.251497 0.390569 0.135475 0.003181 0.002927 0.053632 0.940260 0.002547 0.005345 0.972864 0.019244 0.983414 0.004017 0.009244 0.003325 0.003618 0.985275 0.002504 0.008602 0.002459 0.982637 0.004278 0.010626 0.088153 0.902351 0.004666 0.004830 0.005388 0.339869 0.590608 0.064135 0.006751 0.182092 0.541370 0.269787 0.187749 0.405849 0.189727 0.216675 0.238959 0.174973 0.441529 0.144539 0.131070 0.417834 0.131912 0.319184 0.195749 0.196915 0.435700 0.171636 Consensus sequence: HVBVTGACCCSGBVBV Alignment: HVBVTGACCCSGBVBV --VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 29 Motif name: Zfp423 Original motif 0.212121 0.121212 0.666667 0.000000 0.000000 0.484848 0.515152 0.000000 0.484848 0.515152 0.000000 0.000000 0.515152 0.484848 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.030303 0.515152 0.000000 0.454545 0.727273 0.000000 0.000000 0.272727 0.393939 0.000000 0.484848 0.121212 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.515152 0.484848 0.000000 0.000000 0.484848 0.515152 0.000000 0.242424 0.484848 0.272727 0.333333 0.666667 0.000000 0.000000 Consensus sequence: GSMMCCYARGGKKKC Reserve complement motif 0.333333 0.000000 0.666667 0.000000 0.000000 0.484848 0.242424 0.272727 0.515152 0.000000 0.484848 0.000000 0.000000 0.515152 0.000000 0.484848 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.393939 0.484848 0.000000 0.121212 0.272727 0.000000 0.000000 0.727273 0.030303 0.000000 0.515152 0.454545 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.484848 0.000000 0.515152 0.484848 0.000000 0.515152 0.000000 0.000000 0.515152 0.484848 0.000000 0.212121 0.666667 0.121212 0.000000 Consensus sequence: GYRYCCMTKGGYRSC ************************************************************************ Best Matches for Motif ID 29 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_primary Original Motif Original Motif Backward 1 15 0.017808 Species: Mus musculus Original motif 0.171475 0.300729 0.275648 0.252148 0.274948 0.494479 0.090926 0.139646 0.136266 0.716563 0.033328 0.113843 0.116272 0.772964 0.046083 0.064680 0.103529 0.835329 0.032215 0.028927 0.057023 0.813129 0.071277 0.058571 0.057483 0.766273 0.157290 0.018955 0.071535 0.110226 0.631760 0.186479 0.058571 0.071277 0.813129 0.057023 0.028927 0.032215 0.835329 0.103529 0.064680 0.046083 0.772964 0.116272 0.113843 0.033328 0.716563 0.136266 0.119744 0.068294 0.609218 0.202743 0.065793 0.215443 0.562951 0.155813 0.178819 0.196535 0.205955 0.418691 Consensus sequence: BMCCCCCGGGGGGGB Reverse complement motif 0.418691 0.196535 0.205955 0.178819 0.065793 0.562951 0.215443 0.155813 0.119744 0.609218 0.068294 0.202743 0.113843 0.716563 0.033328 0.136266 0.064680 0.772964 0.046083 0.116272 0.028927 0.835329 0.032215 0.103529 0.058571 0.813129 0.071277 0.057023 0.071535 0.631760 0.110226 0.186479 0.057483 0.157290 0.766273 0.018955 0.057023 0.071277 0.813129 0.058571 0.103529 0.032215 0.835329 0.028927 0.116272 0.046083 0.772964 0.064680 0.136266 0.033328 0.716563 0.113843 0.274948 0.090926 0.494479 0.139646 0.171475 0.275648 0.300729 0.252148 Consensus sequence: VCCCCCCCGGGGGRB Alignment: BMCCCCCGGGGGGGB GSMMCCYARGGKKKC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00006 Zic3_primary Original Motif Original Motif Backward 1 15 0.021395 Species: Mus musculus Original motif 0.133123 0.374622 0.252864 0.239392 0.305344 0.451195 0.093638 0.149822 0.125347 0.723516 0.027695 0.123442 0.129457 0.754873 0.045215 0.070455 0.117681 0.809987 0.036742 0.035590 0.046565 0.817263 0.077300 0.058872 0.047132 0.790594 0.143506 0.018768 0.059681 0.087688 0.665195 0.187436 0.058872 0.077300 0.817263 0.046565 0.035590 0.036742 0.809987 0.117681 0.070455 0.045215 0.754873 0.129457 0.123442 0.027695 0.723516 0.125347 0.104029 0.069439 0.636026 0.190506 0.070968 0.197801 0.581172 0.150060 0.147077 0.235294 0.230097 0.387531 Consensus sequence: BMCCCCCGGGGGGGB Reverse complement motif 0.387531 0.235294 0.230097 0.147077 0.070968 0.581172 0.197801 0.150060 0.104029 0.636026 0.069439 0.190506 0.123442 0.723516 0.027695 0.125347 0.070455 0.754873 0.045215 0.129457 0.035590 0.809987 0.036742 0.117681 0.058872 0.817263 0.077300 0.046565 0.059681 0.665195 0.087688 0.187436 0.047132 0.143506 0.790594 0.018768 0.046565 0.077300 0.817263 0.058872 0.117681 0.036742 0.809987 0.035590 0.129457 0.045215 0.754873 0.070455 0.125347 0.027695 0.723516 0.123442 0.305344 0.093638 0.451195 0.149822 0.133123 0.252864 0.374622 0.239392 Consensus sequence: VCCCCCCCGGGGGRB Alignment: BMCCCCCGGGGGGGB GSMMCCYARGGKKKC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Original Motif Reverse Complement Backward 2 15 0.025524 Species: Mus musculus Original motif 0.319838 0.171199 0.138099 0.370865 0.269358 0.196600 0.346909 0.187133 0.176807 0.338888 0.193903 0.290402 0.230268 0.119645 0.310500 0.339587 0.517372 0.257658 0.111673 0.113296 0.159477 0.126524 0.561119 0.152879 0.117072 0.553013 0.130919 0.198996 0.073372 0.163548 0.525014 0.238066 0.143608 0.186896 0.170528 0.498967 0.054943 0.079034 0.722992 0.143031 0.048852 0.015134 0.852458 0.083556 0.029001 0.023938 0.918900 0.028160 0.036727 0.092645 0.090591 0.780037 0.017757 0.057598 0.895222 0.029423 0.026113 0.048113 0.879744 0.046030 0.023041 0.787043 0.123490 0.066426 0.579766 0.004868 0.296873 0.118493 0.303862 0.042931 0.290151 0.363055 0.099672 0.237431 0.262301 0.400597 0.217788 0.163908 0.367628 0.250676 0.450783 0.141108 0.226137 0.181972 0.485086 0.102553 0.242662 0.169700 0.109057 0.454222 0.145665 0.291056 Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Reverse complement motif 0.109057 0.145665 0.454222 0.291056 0.169700 0.102553 0.242662 0.485086 0.181972 0.141108 0.226137 0.450783 0.217788 0.367628 0.163908 0.250676 0.400597 0.237431 0.262301 0.099672 0.363055 0.042931 0.290151 0.303862 0.118493 0.004868 0.296873 0.579766 0.023041 0.123490 0.787043 0.066426 0.026113 0.879744 0.048113 0.046030 0.017757 0.895222 0.057598 0.029423 0.780037 0.092645 0.090591 0.036727 0.029001 0.918900 0.023938 0.028160 0.048852 0.852458 0.015134 0.083556 0.054943 0.722992 0.079034 0.143031 0.498967 0.186896 0.170528 0.143608 0.073372 0.525014 0.163548 0.238066 0.117072 0.130919 0.553013 0.198996 0.159477 0.561119 0.126524 0.152879 0.113296 0.257658 0.111673 0.517372 0.339587 0.119645 0.310500 0.230268 0.176807 0.193903 0.338888 0.290402 0.269358 0.346909 0.196600 0.187133 0.370865 0.171199 0.138099 0.319838 Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH -------GSMMCCYARGGKKKC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00087 Tcfap2c_primary Original Motif Original Motif Forward 1 15 0.026140 Species: Mus musculus Original motif 0.453894 0.104785 0.095366 0.345954 0.232091 0.189298 0.180541 0.398071 0.233238 0.261214 0.065556 0.439992 0.012319 0.459636 0.511133 0.016912 0.008159 0.984661 0.002866 0.004314 0.001420 0.885962 0.001808 0.110810 0.005689 0.345363 0.111901 0.537046 0.035614 0.353586 0.534122 0.076679 0.537046 0.111901 0.345363 0.005689 0.110810 0.001808 0.885962 0.001420 0.004314 0.002866 0.984661 0.008159 0.016912 0.511133 0.459636 0.012319 0.313235 0.097541 0.435018 0.154206 0.570019 0.140594 0.123600 0.165788 0.326417 0.176576 0.220289 0.276718 Consensus sequence: WHHSCCYSRGGSDAD Reverse complement motif 0.276718 0.176576 0.220289 0.326417 0.165788 0.140594 0.123600 0.570019 0.313235 0.435018 0.097541 0.154206 0.016912 0.459636 0.511133 0.012319 0.004314 0.984661 0.002866 0.008159 0.110810 0.885962 0.001808 0.001420 0.005689 0.111901 0.345363 0.537046 0.035614 0.534122 0.353586 0.076679 0.537046 0.345363 0.111901 0.005689 0.001420 0.001808 0.885962 0.110810 0.008159 0.002866 0.984661 0.004314 0.012319 0.511133 0.459636 0.016912 0.439992 0.261214 0.065556 0.233238 0.398071 0.189298 0.180541 0.232091 0.345954 0.104785 0.095366 0.453894 Consensus sequence: DTHSCCKSMGGSHHW Alignment: WHHSCCYSRGGSDAD GSMMCCYARGGKKKC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_primary Original Motif Original Motif Backward 1 15 0.026620 Species: Mus musculus Original motif 0.422613 0.103833 0.119614 0.353939 0.249412 0.169205 0.202313 0.379071 0.229443 0.231233 0.068690 0.470634 0.013814 0.501744 0.463635 0.020806 0.006744 0.985507 0.003252 0.004497 0.001758 0.859562 0.001396 0.137285 0.005460 0.315890 0.186790 0.491861 0.040326 0.375312 0.497433 0.086929 0.491861 0.186790 0.315890 0.005460 0.137285 0.001396 0.859562 0.001758 0.004497 0.003252 0.985507 0.006744 0.020806 0.463635 0.501744 0.013814 0.348377 0.094358 0.419593 0.137673 0.559411 0.134625 0.133295 0.172668 0.331903 0.197670 0.240404 0.230023 Consensus sequence: WDHSCCYSRGGSRAD Reverse complement motif 0.230023 0.197670 0.240404 0.331903 0.172668 0.134625 0.133295 0.559411 0.348377 0.419593 0.094358 0.137673 0.020806 0.501744 0.463635 0.013814 0.004497 0.985507 0.003252 0.006744 0.137285 0.859562 0.001396 0.001758 0.005460 0.186790 0.315890 0.491861 0.040326 0.497433 0.375312 0.086929 0.491861 0.315890 0.186790 0.005460 0.001758 0.001396 0.859562 0.137285 0.006744 0.003252 0.985507 0.004497 0.013814 0.463635 0.501744 0.020806 0.470634 0.231233 0.068690 0.229443 0.379071 0.169205 0.202313 0.249412 0.353939 0.103833 0.119614 0.422613 Consensus sequence: DTMSCCKSMGGSHDW Alignment: WDHSCCYSRGGSRAD GSMMCCYARGGKKKC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondary Original Motif Original Motif Forward 8 15 0.027503 Species: Mus musculus Original motif 0.533199 0.080715 0.330435 0.055650 0.152031 0.212841 0.110234 0.524893 0.223934 0.264217 0.087037 0.424811 0.115097 0.339994 0.343861 0.201048 0.124993 0.418259 0.365642 0.091106 0.158365 0.292428 0.088361 0.460847 0.165479 0.561778 0.022254 0.250489 0.136873 0.259822 0.579763 0.023543 0.109570 0.747495 0.055128 0.087807 0.061912 0.792986 0.109031 0.036071 0.508703 0.267806 0.169766 0.053725 0.040912 0.838888 0.057470 0.062730 0.330554 0.606077 0.016192 0.047177 0.068079 0.563969 0.029742 0.338209 0.388799 0.291667 0.191284 0.128249 0.183283 0.578079 0.171100 0.067538 0.165163 0.097206 0.631377 0.106253 0.128564 0.435496 0.253275 0.182665 0.103395 0.088222 0.234758 0.573625 0.432879 0.276641 0.155895 0.134585 0.339199 0.148928 0.311036 0.200836 0.211958 0.298526 0.158443 0.331072 Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Reverse complement motif 0.331072 0.298526 0.158443 0.211958 0.200836 0.148928 0.311036 0.339199 0.134585 0.276641 0.155895 0.432879 0.573625 0.088222 0.234758 0.103395 0.128564 0.253275 0.435496 0.182665 0.165163 0.631377 0.097206 0.106253 0.183283 0.171100 0.578079 0.067538 0.128249 0.291667 0.191284 0.388799 0.068079 0.029742 0.563969 0.338209 0.330554 0.016192 0.606077 0.047177 0.040912 0.057470 0.838888 0.062730 0.053725 0.267806 0.169766 0.508703 0.061912 0.109031 0.792986 0.036071 0.109570 0.055128 0.747495 0.087807 0.136873 0.579763 0.259822 0.023543 0.165479 0.022254 0.561778 0.250489 0.460847 0.292428 0.088361 0.158365 0.124993 0.365642 0.418259 0.091106 0.115097 0.343861 0.339994 0.201048 0.424811 0.264217 0.087037 0.223934 0.524893 0.212841 0.110234 0.152031 0.055650 0.080715 0.330435 0.533199 Consensus sequence: HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH -------GSMMCCYARGGKKKC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00220 Nkx1-1 Reverse Complement Original Motif Backward 2 15 0.027694 Species: Mus musculus Original motif 0.353447 0.068118 0.120462 0.457973 0.169987 0.245776 0.546030 0.038207 0.262042 0.483886 0.125630 0.128442 0.354878 0.202410 0.397957 0.044755 0.047984 0.627223 0.134949 0.189844 0.007630 0.416328 0.000687 0.575355 0.884176 0.112464 0.001228 0.002132 0.953912 0.001377 0.001269 0.043443 0.043443 0.001269 0.001377 0.953912 0.002132 0.001228 0.112464 0.884176 0.575355 0.000687 0.416328 0.007630 0.189844 0.134949 0.627223 0.047984 0.014022 0.455684 0.058677 0.471617 0.112401 0.095488 0.677137 0.114973 0.101198 0.313778 0.492626 0.092398 0.160044 0.156084 0.492477 0.191395 0.358939 0.198163 0.262649 0.180248 Consensus sequence: WGHRCYAATTRGYGSDV Reverse complement motif 0.180248 0.198163 0.262649 0.358939 0.160044 0.492477 0.156084 0.191395 0.101198 0.492626 0.313778 0.092398 0.112401 0.677137 0.095488 0.114973 0.471617 0.455684 0.058677 0.014022 0.189844 0.627223 0.134949 0.047984 0.007630 0.000687 0.416328 0.575355 0.884176 0.001228 0.112464 0.002132 0.953912 0.001269 0.001377 0.043443 0.043443 0.001377 0.001269 0.953912 0.002132 0.112464 0.001228 0.884176 0.575355 0.416328 0.000687 0.007630 0.047984 0.134949 0.627223 0.189844 0.354878 0.397957 0.202410 0.044755 0.262042 0.125630 0.483886 0.128442 0.169987 0.546030 0.245776 0.038207 0.457973 0.068118 0.120462 0.353447 Consensus sequence: BHSCMCKAATTMGMDCW Alignment: WGHRCYAATTRGYGSDV -GYRYCCMTKGGYRSC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_primary Original Motif Original Motif Backward 1 15 0.028048 Species: Mus musculus Original motif 0.137831 0.118922 0.394177 0.349070 0.190108 0.163633 0.138507 0.507753 0.346002 0.332315 0.228621 0.093063 0.113254 0.287554 0.373285 0.225908 0.272578 0.125402 0.328963 0.273057 0.333973 0.115165 0.194267 0.356595 0.381054 0.086215 0.501679 0.031052 0.002232 0.007405 0.966087 0.024276 0.834741 0.112115 0.052053 0.001091 0.009034 0.983239 0.000766 0.006960 0.002054 0.988103 0.003138 0.006705 0.805772 0.171299 0.008415 0.014515 0.020076 0.976846 0.000894 0.002183 0.079914 0.917273 0.001179 0.001634 0.013983 0.950545 0.004205 0.031267 0.789407 0.039441 0.108645 0.062507 0.055453 0.161271 0.595249 0.188028 0.333424 0.128169 0.373270 0.165136 0.536103 0.109520 0.062980 0.291397 0.346477 0.090909 0.279533 0.283081 0.045892 0.190183 0.584314 0.179611 0.088294 0.406148 0.251647 0.253912 0.202467 0.447159 0.162802 0.187571 Consensus sequence: DTVBDDRGACCACCCAGDWDGBH Reverse complement motif 0.202467 0.162802 0.447159 0.187571 0.088294 0.251647 0.406148 0.253912 0.045892 0.584314 0.190183 0.179611 0.283081 0.090909 0.279533 0.346477 0.291397 0.109520 0.062980 0.536103 0.333424 0.373270 0.128169 0.165136 0.055453 0.595249 0.161271 0.188028 0.062507 0.039441 0.108645 0.789407 0.013983 0.004205 0.950545 0.031267 0.079914 0.001179 0.917273 0.001634 0.020076 0.000894 0.976846 0.002183 0.014515 0.171299 0.008415 0.805772 0.002054 0.003138 0.988103 0.006705 0.009034 0.000766 0.983239 0.006960 0.001091 0.112115 0.052053 0.834741 0.002232 0.966087 0.007405 0.024276 0.381054 0.501679 0.086215 0.031052 0.356595 0.115165 0.194267 0.333973 0.272578 0.328963 0.125402 0.273057 0.113254 0.373285 0.287554 0.225908 0.093063 0.332315 0.228621 0.346002 0.507753 0.163633 0.138507 0.190108 0.137831 0.394177 0.118922 0.349070 Consensus sequence: DBCDWHCTGGGTGGTCMDHBBAH Alignment: DTVBDDRGACCACCCAGDWDGBH --------GSMMCCYARGGKKKC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Original Motif Reverse Complement Forward 9 15 0.028880 Species: Mus musculus Original motif 0.204923 0.208846 0.365383 0.220848 0.294304 0.300143 0.167287 0.238266 0.109711 0.619514 0.117379 0.153396 0.178979 0.378580 0.230177 0.212264 0.159594 0.542602 0.118178 0.179627 0.125206 0.430074 0.151826 0.292894 0.097692 0.709845 0.116956 0.075506 0.148292 0.565912 0.037632 0.248164 0.077951 0.034190 0.855503 0.032356 0.001657 0.001061 0.971877 0.025405 0.001926 0.001084 0.991712 0.005278 0.033031 0.012001 0.057796 0.897171 0.002723 0.002647 0.993348 0.001281 0.003261 0.000963 0.987199 0.008577 0.000611 0.090925 0.074857 0.833608 0.015299 0.978878 0.004949 0.000874 0.013368 0.600902 0.033485 0.352245 0.231949 0.149575 0.118804 0.499672 0.267580 0.186002 0.371242 0.175176 0.264884 0.223483 0.110082 0.401551 0.221365 0.170121 0.179559 0.428955 0.112997 0.692930 0.139981 0.054092 0.460305 0.207883 0.155111 0.176702 Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Reverse complement motif 0.176702 0.207883 0.155111 0.460305 0.112997 0.139981 0.692930 0.054092 0.428955 0.170121 0.179559 0.221365 0.401551 0.223483 0.110082 0.264884 0.267580 0.371242 0.186002 0.175176 0.499672 0.149575 0.118804 0.231949 0.013368 0.033485 0.600902 0.352245 0.015299 0.004949 0.978878 0.000874 0.833608 0.090925 0.074857 0.000611 0.003261 0.987199 0.000963 0.008577 0.002723 0.993348 0.002647 0.001281 0.897171 0.012001 0.057796 0.033031 0.001926 0.991712 0.001084 0.005278 0.001657 0.971877 0.001061 0.025405 0.077951 0.855503 0.034190 0.032356 0.148292 0.037632 0.565912 0.248164 0.097692 0.116956 0.709845 0.075506 0.125206 0.151826 0.430074 0.292894 0.159594 0.118178 0.542602 0.179627 0.178979 0.230177 0.378580 0.212264 0.109711 0.117379 0.619514 0.153396 0.294304 0.167287 0.300143 0.238266 0.204923 0.365383 0.208846 0.220848 Consensus sequence: HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB --------GSMMCCYARGGKKKC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00028 Tcfap2e_primary Original Motif Original Motif Forward 1 15 0.029693 Species: Mus musculus Original motif 0.369517 0.172742 0.163174 0.294567 0.260541 0.211816 0.194359 0.333284 0.292862 0.281323 0.073013 0.352801 0.011777 0.272676 0.697188 0.018359 0.005160 0.983588 0.005917 0.005335 0.002256 0.960488 0.005733 0.031524 0.003735 0.283214 0.123762 0.589290 0.024383 0.379981 0.542999 0.052638 0.589290 0.123762 0.283214 0.003735 0.031524 0.005733 0.960488 0.002256 0.005335 0.005917 0.983588 0.005160 0.018359 0.697188 0.272676 0.011777 0.328286 0.093173 0.334133 0.244408 0.563777 0.145250 0.140240 0.150733 0.263206 0.222321 0.242153 0.272320 Consensus sequence: HHHGCCTSAGGCDAD Reverse complement motif 0.272320 0.222321 0.242153 0.263206 0.150733 0.145250 0.140240 0.563777 0.328286 0.334133 0.093173 0.244408 0.018359 0.272676 0.697188 0.011777 0.005335 0.983588 0.005917 0.005160 0.031524 0.960488 0.005733 0.002256 0.003735 0.123762 0.283214 0.589290 0.024383 0.542999 0.379981 0.052638 0.589290 0.283214 0.123762 0.003735 0.002256 0.005733 0.960488 0.031524 0.005160 0.005917 0.983588 0.005335 0.011777 0.697188 0.272676 0.018359 0.352801 0.281323 0.073013 0.292862 0.333284 0.211816 0.194359 0.260541 0.294567 0.172742 0.163174 0.369517 Consensus sequence: DTHGCCTSAGGCHHH Alignment: HHHGCCTSAGGCDAD GSMMCCYARGGKKKC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 30 Motif name: ZEB1 Original motif 0.024390 0.829268 0.024390 0.121951 0.926829 0.000000 0.048780 0.024390 0.000000 0.975610 0.024390 0.000000 0.000000 0.926829 0.073171 0.000000 0.000000 0.024390 0.000000 0.975610 0.243902 0.024390 0.390244 0.341463 Consensus sequence: CACCTD Reserve complement motif 0.243902 0.390244 0.024390 0.341463 0.975610 0.024390 0.000000 0.000000 0.000000 0.073171 0.926829 0.000000 0.000000 0.024390 0.975610 0.000000 0.024390 0.000000 0.048780 0.926829 0.024390 0.024390 0.829268 0.121951 Consensus sequence: HAGGTG ************************************************************************ Best Matches for Motif ID 30 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00068 Eomes_secondary Original Motif Reverse Complement Backward 4 6 0.000000 Species: Mus musculus Original motif 0.253642 0.252604 0.298295 0.195458 0.112892 0.341342 0.341061 0.204704 0.297430 0.215095 0.343350 0.144125 0.241098 0.129378 0.421448 0.208076 0.894201 0.007299 0.061032 0.037468 0.052259 0.054303 0.856609 0.036829 0.005074 0.015048 0.966734 0.013144 0.003258 0.061529 0.002368 0.932845 0.017531 0.005025 0.973155 0.004289 0.116022 0.030172 0.047139 0.806667 0.027749 0.602513 0.009946 0.359792 0.018763 0.048982 0.794648 0.137608 0.177116 0.459591 0.284833 0.078460 0.121483 0.491485 0.148745 0.238287 0.152590 0.245835 0.214717 0.386857 0.221040 0.320773 0.249918 0.208270 Consensus sequence: VBVDAGGTGTYGVBBV Reverse complement motif 0.221040 0.249918 0.320773 0.208270 0.386857 0.245835 0.214717 0.152590 0.121483 0.148745 0.491485 0.238287 0.177116 0.284833 0.459591 0.078460 0.018763 0.794648 0.048982 0.137608 0.027749 0.009946 0.602513 0.359792 0.806667 0.030172 0.047139 0.116022 0.017531 0.973155 0.005025 0.004289 0.932845 0.061529 0.002368 0.003258 0.005074 0.966734 0.015048 0.013144 0.052259 0.856609 0.054303 0.036829 0.037468 0.007299 0.061032 0.894201 0.241098 0.421448 0.129378 0.208076 0.297430 0.343350 0.215095 0.144125 0.112892 0.341061 0.341342 0.204704 0.253642 0.298295 0.252604 0.195458 Consensus sequence: VVBVCKACACCTHVBV Alignment: VVBVCKACACCTHVBV -------CACCTD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00199 Six4 Reverse Complement Reverse Complement Forward 4 6 0.004331 Species: Mus musculus Original motif 0.523054 0.168817 0.140331 0.167798 0.187385 0.177009 0.246164 0.389442 0.414492 0.118547 0.308876 0.158085 0.345234 0.289795 0.130249 0.234723 0.611522 0.116948 0.098944 0.172586 0.016342 0.029436 0.015062 0.939161 0.014351 0.004796 0.962435 0.018418 0.987454 0.005228 0.002590 0.004727 0.007431 0.812214 0.005849 0.174506 0.969354 0.025386 0.002362 0.002898 0.005123 0.989068 0.003362 0.002447 0.001424 0.969981 0.012011 0.016585 0.209729 0.227411 0.210523 0.352337 0.341679 0.297940 0.104590 0.255792 0.126190 0.288862 0.245018 0.339930 0.173008 0.295896 0.252422 0.278674 0.409639 0.210750 0.296197 0.083415 Consensus sequence: ADDHATGACACCBHBBV Reverse complement motif 0.083415 0.210750 0.296197 0.409639 0.173008 0.252422 0.295896 0.278674 0.339930 0.288862 0.245018 0.126190 0.255792 0.297940 0.104590 0.341679 0.352337 0.227411 0.210523 0.209729 0.001424 0.012011 0.969981 0.016585 0.005123 0.003362 0.989068 0.002447 0.002898 0.025386 0.002362 0.969354 0.007431 0.005849 0.812214 0.174506 0.004727 0.005228 0.002590 0.987454 0.014351 0.962435 0.004796 0.018418 0.939161 0.029436 0.015062 0.016342 0.172586 0.116948 0.098944 0.611522 0.234723 0.289795 0.130249 0.345234 0.158085 0.118547 0.308876 0.414492 0.389442 0.177009 0.246164 0.187385 0.167798 0.168817 0.140331 0.523054 Consensus sequence: BBVHVGGTGTCATHDDT Alignment: BBVHVGGTGTCATHDDT ---HAGGTG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00068 Eomes_primary Original Motif Reverse Complement Forward 9 6 0.005241 Species: Mus musculus Original motif 0.186316 0.215541 0.297644 0.300499 0.300381 0.234276 0.266283 0.199061 0.317841 0.211418 0.183235 0.287507 0.482598 0.095323 0.245062 0.177017 0.654197 0.008988 0.261951 0.074864 0.095656 0.022883 0.843364 0.038097 0.002655 0.008355 0.976390 0.012600 0.003287 0.080755 0.001057 0.914900 0.006753 0.001517 0.989917 0.001813 0.039940 0.098800 0.003305 0.857955 0.009015 0.039036 0.844029 0.107921 0.984070 0.002369 0.008852 0.004709 0.789505 0.101528 0.029294 0.079672 0.649685 0.139882 0.090466 0.119966 0.421759 0.205595 0.073074 0.299573 0.214779 0.290522 0.134050 0.360649 0.202141 0.270323 0.176798 0.350738 Consensus sequence: BVHDAGGTGTGAAAHHH Reverse complement motif 0.350738 0.270323 0.176798 0.202141 0.360649 0.290522 0.134050 0.214779 0.299573 0.205595 0.073074 0.421759 0.119966 0.139882 0.090466 0.649685 0.079672 0.101528 0.029294 0.789505 0.004709 0.002369 0.008852 0.984070 0.009015 0.844029 0.039036 0.107921 0.857955 0.098800 0.003305 0.039940 0.006753 0.989917 0.001517 0.001813 0.914900 0.080755 0.001057 0.003287 0.002655 0.976390 0.008355 0.012600 0.095656 0.843364 0.022883 0.038097 0.074864 0.008988 0.261951 0.654197 0.177017 0.095323 0.245062 0.482598 0.287507 0.211418 0.183235 0.317841 0.199061 0.234276 0.266283 0.300381 0.300499 0.215541 0.297644 0.186316 Consensus sequence: HHHTTTCACACCTDHBV Alignment: HHHTTTCACACCTDHBV --------CACCTD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Original Motif Reverse Complement Forward 7 6 0.009113 Species: Mus musculus Original motif 0.306209 0.232705 0.244475 0.216611 0.165668 0.171480 0.222584 0.440269 0.213008 0.429038 0.156385 0.201569 0.283226 0.329518 0.160795 0.226461 0.439156 0.283517 0.251270 0.026056 0.014994 0.980987 0.000714 0.003304 0.975741 0.020182 0.002909 0.001168 0.000926 0.191353 0.801648 0.006073 0.015382 0.090853 0.893043 0.000721 0.001549 0.005912 0.001713 0.990826 0.004000 0.000857 0.989667 0.005475 0.016957 0.663726 0.148127 0.171190 0.299047 0.091156 0.448649 0.161148 0.354701 0.214677 0.236757 0.193865 0.399446 0.174508 0.200036 0.226009 0.303545 0.277435 0.200094 0.218926 0.380242 0.148876 0.163367 0.307514 Consensus sequence: VBHHVCAGGTGCDVDHD Reverse complement motif 0.307514 0.148876 0.163367 0.380242 0.218926 0.277435 0.200094 0.303545 0.226009 0.174508 0.200036 0.399446 0.193865 0.214677 0.236757 0.354701 0.299047 0.448649 0.091156 0.161148 0.016957 0.148127 0.663726 0.171190 0.004000 0.989667 0.000857 0.005475 0.990826 0.005912 0.001713 0.001549 0.015382 0.893043 0.090853 0.000721 0.000926 0.801648 0.191353 0.006073 0.001168 0.020182 0.002909 0.975741 0.014994 0.000714 0.980987 0.003304 0.026056 0.283517 0.251270 0.439156 0.283226 0.160795 0.329518 0.226461 0.213008 0.156385 0.429038 0.201569 0.440269 0.171480 0.222584 0.165668 0.216611 0.232705 0.244475 0.306209 Consensus sequence: DHDBHGCACCTGBDDVB Alignment: DHDBHGCACCTGBDDVB ------CACCTD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00047 Zbtb7b_secondary Original Motif Original Motif Backward 4 6 0.023356 Species: Mus musculus Original motif 0.203365 0.307129 0.203712 0.285795 0.306328 0.182359 0.203143 0.308170 0.220878 0.174035 0.265341 0.339746 0.475421 0.085294 0.281054 0.158231 0.395971 0.330114 0.260810 0.013104 0.001970 0.006366 0.962058 0.029606 0.907785 0.081900 0.001279 0.009036 0.008745 0.981422 0.002970 0.006863 0.006791 0.966163 0.017605 0.009441 0.894233 0.081139 0.004949 0.019679 0.007553 0.970771 0.004892 0.016783 0.016719 0.797465 0.011842 0.173974 0.415678 0.189952 0.165207 0.229163 0.092707 0.182206 0.346121 0.378967 0.175722 0.130498 0.215118 0.478662 0.365762 0.163282 0.315788 0.155168 0.214734 0.272805 0.243194 0.269267 Consensus sequence: BDDRVGACCACCHBDVB Reverse complement motif 0.214734 0.243194 0.272805 0.269267 0.155168 0.163282 0.315788 0.365762 0.478662 0.130498 0.215118 0.175722 0.378967 0.182206 0.346121 0.092707 0.229163 0.189952 0.165207 0.415678 0.016719 0.011842 0.797465 0.173974 0.007553 0.004892 0.970771 0.016783 0.019679 0.081139 0.004949 0.894233 0.006791 0.017605 0.966163 0.009441 0.008745 0.002970 0.981422 0.006863 0.009036 0.081900 0.001279 0.907785 0.001970 0.962058 0.006366 0.029606 0.013104 0.330114 0.260810 0.395971 0.158231 0.085294 0.281054 0.475421 0.339746 0.174035 0.265341 0.220878 0.308170 0.182359 0.203143 0.306328 0.203365 0.203712 0.307129 0.285795 Consensus sequence: BBDVHGGTGGTCBKDDB Alignment: BDDRVGACCACCHBDVB --------CACCTD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Reverse Complement Original Motif Backward 11 6 0.023393 Species: Mus musculus Original motif 0.204923 0.208846 0.365383 0.220848 0.294304 0.300143 0.167287 0.238266 0.109711 0.619514 0.117379 0.153396 0.178979 0.378580 0.230177 0.212264 0.159594 0.542602 0.118178 0.179627 0.125206 0.430074 0.151826 0.292894 0.097692 0.709845 0.116956 0.075506 0.148292 0.565912 0.037632 0.248164 0.077951 0.034190 0.855503 0.032356 0.001657 0.001061 0.971877 0.025405 0.001926 0.001084 0.991712 0.005278 0.033031 0.012001 0.057796 0.897171 0.002723 0.002647 0.993348 0.001281 0.003261 0.000963 0.987199 0.008577 0.000611 0.090925 0.074857 0.833608 0.015299 0.978878 0.004949 0.000874 0.013368 0.600902 0.033485 0.352245 0.231949 0.149575 0.118804 0.499672 0.267580 0.186002 0.371242 0.175176 0.264884 0.223483 0.110082 0.401551 0.221365 0.170121 0.179559 0.428955 0.112997 0.692930 0.139981 0.054092 0.460305 0.207883 0.155111 0.176702 Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Reverse complement motif 0.176702 0.207883 0.155111 0.460305 0.112997 0.139981 0.692930 0.054092 0.428955 0.170121 0.179559 0.221365 0.401551 0.223483 0.110082 0.264884 0.267580 0.371242 0.186002 0.175176 0.499672 0.149575 0.118804 0.231949 0.013368 0.033485 0.600902 0.352245 0.015299 0.004949 0.978878 0.000874 0.833608 0.090925 0.074857 0.000611 0.003261 0.987199 0.000963 0.008577 0.002723 0.993348 0.002647 0.001281 0.897171 0.012001 0.057796 0.033031 0.001926 0.991712 0.001084 0.005278 0.001657 0.971877 0.001061 0.025405 0.077951 0.855503 0.034190 0.032356 0.148292 0.037632 0.565912 0.248164 0.097692 0.116956 0.709845 0.075506 0.125206 0.151826 0.430074 0.292894 0.159594 0.118178 0.542602 0.179627 0.178979 0.230177 0.378580 0.212264 0.109711 0.117379 0.619514 0.153396 0.294304 0.167287 0.300143 0.238266 0.204923 0.365383 0.208846 0.220848 Consensus sequence: HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH -------HAGGTG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primary Original Motif Original Motif Backward 6 6 0.025434 Species: Mus musculus Original motif 0.472795 0.179227 0.091251 0.256726 0.036521 0.159743 0.204840 0.598896 0.164582 0.312805 0.221324 0.301289 0.237069 0.249050 0.293048 0.220833 0.401949 0.225181 0.229401 0.143469 0.161422 0.494334 0.252207 0.092036 0.252940 0.177721 0.369400 0.199939 0.119630 0.024651 0.849920 0.005798 0.000962 0.002398 0.990616 0.006023 0.937852 0.027016 0.034535 0.000597 0.008963 0.987756 0.000629 0.002652 0.001584 0.992898 0.002349 0.003169 0.956822 0.027342 0.002484 0.013352 0.009873 0.987759 0.000988 0.001381 0.016397 0.980856 0.000369 0.002378 0.081761 0.758555 0.038572 0.121112 0.371713 0.091838 0.448027 0.088423 0.111617 0.121913 0.683885 0.082585 0.334562 0.102916 0.436488 0.126034 0.210362 0.101261 0.238339 0.450037 0.169041 0.271583 0.320799 0.238576 0.140316 0.049885 0.735236 0.074563 Consensus sequence: HTBVVVDGGACCACCCRGRDBG Reverse complement motif 0.140316 0.735236 0.049885 0.074563 0.169041 0.320799 0.271583 0.238576 0.450037 0.101261 0.238339 0.210362 0.334562 0.436488 0.102916 0.126034 0.111617 0.683885 0.121913 0.082585 0.371713 0.448027 0.091838 0.088423 0.081761 0.038572 0.758555 0.121112 0.016397 0.000369 0.980856 0.002378 0.009873 0.000988 0.987759 0.001381 0.013352 0.027342 0.002484 0.956822 0.001584 0.002349 0.992898 0.003169 0.008963 0.000629 0.987756 0.002652 0.000597 0.027016 0.034535 0.937852 0.000962 0.990616 0.002398 0.006023 0.119630 0.849920 0.024651 0.005798 0.252940 0.369400 0.177721 0.199939 0.161422 0.252207 0.494334 0.092036 0.143469 0.225181 0.229401 0.401949 0.237069 0.293048 0.249050 0.220833 0.164582 0.221324 0.312805 0.301289 0.598896 0.159743 0.204840 0.036521 0.256726 0.179227 0.091251 0.472795 Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH Alignment: HTBVVVDGGACCACCCRGRDBG -----------CACCTD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primary Original Motif Original Motif Backward 6 6 0.029014 Species: Mus musculus Original motif 0.180868 0.321661 0.134642 0.362829 0.232215 0.134289 0.315356 0.318141 0.065068 0.093681 0.569842 0.271408 0.370822 0.229680 0.154738 0.244759 0.323039 0.182873 0.173588 0.320500 0.175039 0.266898 0.276080 0.281984 0.412669 0.147730 0.146326 0.293275 0.325953 0.028805 0.629596 0.015646 0.003017 0.001766 0.979711 0.015507 0.888973 0.040666 0.069420 0.000941 0.017309 0.979155 0.000899 0.002637 0.001732 0.988816 0.004856 0.004596 0.889763 0.078125 0.010384 0.021729 0.007566 0.987081 0.001421 0.003932 0.027797 0.966593 0.000878 0.004731 0.025816 0.867003 0.065749 0.041433 0.220658 0.075256 0.582904 0.121182 0.088946 0.283695 0.565345 0.062015 0.328012 0.241332 0.305901 0.124755 0.307302 0.137589 0.375928 0.179181 0.298752 0.231470 0.315255 0.154524 0.094565 0.142901 0.705696 0.056838 Consensus sequence: HDGHHBHRGACCACCCGSVDVG Reverse complement motif 0.094565 0.705696 0.142901 0.056838 0.298752 0.315255 0.231470 0.154524 0.307302 0.375928 0.137589 0.179181 0.124755 0.241332 0.305901 0.328012 0.088946 0.565345 0.283695 0.062015 0.220658 0.582904 0.075256 0.121182 0.025816 0.065749 0.867003 0.041433 0.027797 0.000878 0.966593 0.004731 0.007566 0.001421 0.987081 0.003932 0.021729 0.078125 0.010384 0.889763 0.001732 0.004856 0.988816 0.004596 0.017309 0.000899 0.979155 0.002637 0.000941 0.040666 0.069420 0.888973 0.003017 0.979711 0.001766 0.015507 0.325953 0.629596 0.028805 0.015646 0.293275 0.147730 0.146326 0.412669 0.281984 0.266898 0.276080 0.175039 0.320500 0.182873 0.173588 0.323039 0.244759 0.229680 0.154738 0.370822 0.065068 0.569842 0.093681 0.271408 0.318141 0.134289 0.315356 0.232215 0.362829 0.321661 0.134642 0.180868 Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH Alignment: HDGHHBHRGACCACCCGSVDVG -----------CACCTD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00036 Myf6_primary Reverse Complement Original Motif Backward 5 6 0.030967 Species: Mus musculus Original motif 0.249543 0.203739 0.394131 0.152587 0.349361 0.204136 0.321767 0.124736 0.386930 0.174655 0.250284 0.188131 0.173937 0.233501 0.412360 0.180201 0.663624 0.037653 0.264216 0.034507 0.717265 0.040761 0.206656 0.035318 0.004176 0.985948 0.003219 0.006657 0.967612 0.005543 0.008604 0.018241 0.080781 0.089857 0.746009 0.083354 0.019831 0.270961 0.409808 0.299401 0.019877 0.026996 0.014022 0.939105 0.005169 0.007980 0.978334 0.008518 0.115710 0.200514 0.226485 0.457291 0.032392 0.527196 0.128372 0.312041 0.202049 0.384912 0.106488 0.306551 0.181994 0.192975 0.425582 0.199448 Consensus sequence: VVDBAACAGBTGBYHB Reverse complement motif 0.181994 0.425582 0.192975 0.199448 0.202049 0.106488 0.384912 0.306551 0.032392 0.128372 0.527196 0.312041 0.457291 0.200514 0.226485 0.115710 0.005169 0.978334 0.007980 0.008518 0.939105 0.026996 0.014022 0.019877 0.019831 0.409808 0.270961 0.299401 0.080781 0.746009 0.089857 0.083354 0.018241 0.005543 0.008604 0.967612 0.004176 0.003219 0.985948 0.006657 0.035318 0.040761 0.206656 0.717265 0.034507 0.037653 0.264216 0.663624 0.173937 0.412360 0.233501 0.180201 0.188131 0.174655 0.250284 0.386930 0.124736 0.204136 0.321767 0.349361 0.249543 0.394131 0.203739 0.152587 Consensus sequence: BDKVCABCTGTTBDBV Alignment: VVDBAACAGBTGBYHB ------HAGGTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00249 Nkx2-5 Original Motif Original Motif Forward 6 6 0.031502 Species: Mus musculus Original motif 0.284346 0.280937 0.138180 0.296538 0.399663 0.110464 0.327481 0.162392 0.637560 0.029806 0.218321 0.114314 0.184898 0.144379 0.370828 0.299895 0.017459 0.862111 0.118223 0.002207 0.001004 0.958164 0.000888 0.039945 0.947796 0.011499 0.000413 0.040291 0.024268 0.973476 0.000709 0.001546 0.002616 0.001901 0.003337 0.992147 0.006742 0.071290 0.000276 0.921691 0.393078 0.093424 0.490620 0.022879 0.870162 0.007294 0.051952 0.070591 0.632449 0.156278 0.172644 0.038628 0.362798 0.126579 0.085796 0.424828 0.132810 0.206405 0.025084 0.635702 0.094708 0.272324 0.087702 0.545267 Consensus sequence: HDADCCACTTRAAWTT Reverse complement motif 0.545267 0.272324 0.087702 0.094708 0.635702 0.206405 0.025084 0.132810 0.424828 0.126579 0.085796 0.362798 0.038628 0.156278 0.172644 0.632449 0.070591 0.007294 0.051952 0.870162 0.393078 0.490620 0.093424 0.022879 0.921691 0.071290 0.000276 0.006742 0.992147 0.001901 0.003337 0.002616 0.024268 0.000709 0.973476 0.001546 0.040291 0.011499 0.000413 0.947796 0.001004 0.000888 0.958164 0.039945 0.017459 0.118223 0.862111 0.002207 0.184898 0.370828 0.144379 0.299895 0.114314 0.029806 0.218321 0.637560 0.162392 0.110464 0.327481 0.399663 0.296538 0.280937 0.138180 0.284346 Consensus sequence: AAWTTMAAGTGGHTDH Alignment: HDADCCACTTRAAWTT -----CACCTD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 31 Motif name: TFAP2A Original motif 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.118919 0.383784 0.248649 0.248649 0.102703 0.308108 0.329730 0.259459 0.297297 0.237838 0.362162 0.102703 0.286486 0.162162 0.491892 0.059459 0.102703 0.086486 0.740541 0.070270 0.048649 0.421622 0.427027 0.102703 Consensus sequence: GCCBBVRGS Reserve complement motif 0.048649 0.427027 0.421622 0.102703 0.102703 0.740541 0.086486 0.070270 0.286486 0.491892 0.162162 0.059459 0.297297 0.362162 0.237838 0.102703 0.102703 0.329730 0.308108 0.259459 0.118919 0.248649 0.383784 0.248649 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 Consensus sequence: SCMVBBGGC ************************************************************************ Best Matches for Motif ID 31 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00010 Tcfap2b_secondary Original Motif Reverse Complement Forward 4 9 0.011555 Species: Mus musculus Original motif 0.325895 0.099601 0.286848 0.287657 0.177095 0.035123 0.260876 0.526906 0.344850 0.211117 0.015725 0.428308 0.128363 0.059965 0.777560 0.034112 0.048072 0.881624 0.024842 0.045462 0.072628 0.872650 0.011271 0.043451 0.057165 0.162157 0.347719 0.432959 0.015437 0.448405 0.428425 0.107733 0.446877 0.336374 0.099940 0.116809 0.090955 0.023004 0.848240 0.037801 0.040151 0.015072 0.901303 0.043473 0.087378 0.817019 0.027876 0.067727 0.532482 0.021469 0.266773 0.179276 0.325017 0.271661 0.138860 0.264463 0.203625 0.179490 0.143885 0.473001 Consensus sequence: DTWGCCKSMGGCRHH Reverse complement motif 0.473001 0.179490 0.143885 0.203625 0.264463 0.271661 0.138860 0.325017 0.179276 0.021469 0.266773 0.532482 0.087378 0.027876 0.817019 0.067727 0.040151 0.901303 0.015072 0.043473 0.090955 0.848240 0.023004 0.037801 0.116809 0.336374 0.099940 0.446877 0.015437 0.428425 0.448405 0.107733 0.432959 0.162157 0.347719 0.057165 0.072628 0.011271 0.872650 0.043451 0.048072 0.024842 0.881624 0.045462 0.128363 0.777560 0.059965 0.034112 0.428308 0.211117 0.015725 0.344850 0.526906 0.035123 0.260876 0.177095 0.287657 0.099601 0.286848 0.325895 Consensus sequence: HHKGCCYSRGGCWAD Alignment: HHKGCCYSRGGCWAD ---GCCBBVRGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00010 Tcfap2b_primary Original Motif Original Motif Forward 3 9 0.015045 Species: Mus musculus Original motif 0.241622 0.134036 0.195946 0.428396 0.170161 0.349277 0.064019 0.416543 0.037533 0.228173 0.717601 0.016693 0.007604 0.927737 0.058613 0.006046 0.002996 0.965706 0.002874 0.028425 0.004745 0.626301 0.026069 0.342885 0.022194 0.291409 0.272335 0.414062 0.589759 0.136946 0.247468 0.025828 0.342885 0.026069 0.626301 0.004745 0.028425 0.002874 0.965706 0.002996 0.006046 0.058613 0.927737 0.007604 0.016693 0.717601 0.228173 0.037533 0.664950 0.075306 0.151047 0.108696 0.315138 0.174615 0.172322 0.337924 Consensus sequence: DYGCCYBARGGCAH Reverse complement motif 0.337924 0.174615 0.172322 0.315138 0.108696 0.075306 0.151047 0.664950 0.016693 0.228173 0.717601 0.037533 0.006046 0.927737 0.058613 0.007604 0.028425 0.965706 0.002874 0.002996 0.342885 0.626301 0.026069 0.004745 0.025828 0.136946 0.247468 0.589759 0.414062 0.291409 0.272335 0.022194 0.004745 0.026069 0.626301 0.342885 0.002996 0.002874 0.965706 0.028425 0.007604 0.058613 0.927737 0.006046 0.037533 0.717601 0.228173 0.016693 0.416543 0.349277 0.064019 0.170161 0.428396 0.134036 0.195946 0.241622 Consensus sequence: HTGCCMTVKGGCMD Alignment: DYGCCYBARGGCAH --GCCBBVRGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_primary Original Motif Original Motif Forward 4 9 0.015153 Species: Mus musculus Original motif 0.422613 0.103833 0.119614 0.353939 0.249412 0.169205 0.202313 0.379071 0.229443 0.231233 0.068690 0.470634 0.013814 0.501744 0.463635 0.020806 0.006744 0.985507 0.003252 0.004497 0.001758 0.859562 0.001396 0.137285 0.005460 0.315890 0.186790 0.491861 0.040326 0.375312 0.497433 0.086929 0.491861 0.186790 0.315890 0.005460 0.137285 0.001396 0.859562 0.001758 0.004497 0.003252 0.985507 0.006744 0.020806 0.463635 0.501744 0.013814 0.348377 0.094358 0.419593 0.137673 0.559411 0.134625 0.133295 0.172668 0.331903 0.197670 0.240404 0.230023 Consensus sequence: WDHSCCYSRGGSRAD Reverse complement motif 0.230023 0.197670 0.240404 0.331903 0.172668 0.134625 0.133295 0.559411 0.348377 0.419593 0.094358 0.137673 0.020806 0.501744 0.463635 0.013814 0.004497 0.985507 0.003252 0.006744 0.137285 0.859562 0.001396 0.001758 0.005460 0.186790 0.315890 0.491861 0.040326 0.497433 0.375312 0.086929 0.491861 0.315890 0.186790 0.005460 0.001758 0.001396 0.859562 0.137285 0.006744 0.003252 0.985507 0.004497 0.013814 0.463635 0.501744 0.020806 0.470634 0.231233 0.068690 0.229443 0.379071 0.169205 0.202313 0.249412 0.353939 0.103833 0.119614 0.422613 Consensus sequence: DTMSCCKSMGGSHDW Alignment: WDHSCCYSRGGSRAD ---GCCBBVRGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00087 Tcfap2c_primary Original Motif Original Motif Backward 4 9 0.016909 Species: Mus musculus Original motif 0.453894 0.104785 0.095366 0.345954 0.232091 0.189298 0.180541 0.398071 0.233238 0.261214 0.065556 0.439992 0.012319 0.459636 0.511133 0.016912 0.008159 0.984661 0.002866 0.004314 0.001420 0.885962 0.001808 0.110810 0.005689 0.345363 0.111901 0.537046 0.035614 0.353586 0.534122 0.076679 0.537046 0.111901 0.345363 0.005689 0.110810 0.001808 0.885962 0.001420 0.004314 0.002866 0.984661 0.008159 0.016912 0.511133 0.459636 0.012319 0.313235 0.097541 0.435018 0.154206 0.570019 0.140594 0.123600 0.165788 0.326417 0.176576 0.220289 0.276718 Consensus sequence: WHHSCCYSRGGSDAD Reverse complement motif 0.276718 0.176576 0.220289 0.326417 0.165788 0.140594 0.123600 0.570019 0.313235 0.435018 0.097541 0.154206 0.016912 0.459636 0.511133 0.012319 0.004314 0.984661 0.002866 0.008159 0.110810 0.885962 0.001808 0.001420 0.005689 0.111901 0.345363 0.537046 0.035614 0.534122 0.353586 0.076679 0.537046 0.345363 0.111901 0.005689 0.001420 0.001808 0.885962 0.110810 0.008159 0.002866 0.984661 0.004314 0.012319 0.511133 0.459636 0.016912 0.439992 0.261214 0.065556 0.233238 0.398071 0.189298 0.180541 0.232091 0.345954 0.104785 0.095366 0.453894 Consensus sequence: DTHSCCKSMGGSHHW Alignment: WHHSCCYSRGGSDAD ---GCCBBVRGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00087 Tcfap2c_secondary Original Motif Original Motif Forward 3 9 0.017026 Species: Mus musculus Original motif 0.203043 0.348071 0.227399 0.221487 0.179291 0.396392 0.144383 0.279934 0.093421 0.033540 0.859005 0.014034 0.181373 0.693724 0.031481 0.093422 0.019065 0.840720 0.011622 0.128593 0.197421 0.501100 0.087606 0.213873 0.457286 0.063305 0.239499 0.239911 0.508984 0.143325 0.116228 0.231463 0.213873 0.087606 0.501100 0.197421 0.128593 0.011622 0.840720 0.019065 0.093422 0.031481 0.693724 0.181373 0.014034 0.859005 0.033540 0.093421 0.477741 0.059425 0.165356 0.297478 0.278658 0.136011 0.311291 0.274039 Consensus sequence: BHGCCCDAGGGCWD Reverse complement motif 0.278658 0.311291 0.136011 0.274039 0.297478 0.059425 0.165356 0.477741 0.014034 0.033540 0.859005 0.093421 0.093422 0.693724 0.031481 0.181373 0.128593 0.840720 0.011622 0.019065 0.213873 0.501100 0.087606 0.197421 0.231463 0.143325 0.116228 0.508984 0.239911 0.063305 0.239499 0.457286 0.197421 0.087606 0.501100 0.213873 0.019065 0.011622 0.840720 0.128593 0.181373 0.031481 0.693724 0.093422 0.093421 0.859005 0.033540 0.014034 0.179291 0.144383 0.396392 0.279934 0.203043 0.227399 0.348071 0.221487 Consensus sequence: HWGCCCTDGGGCDB Alignment: BHGCCCDAGGGCWD --GCCBBVRGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00028 Tcfap2e_primary Original Motif Original Motif Backward 4 9 0.019885 Species: Mus musculus Original motif 0.369517 0.172742 0.163174 0.294567 0.260541 0.211816 0.194359 0.333284 0.292862 0.281323 0.073013 0.352801 0.011777 0.272676 0.697188 0.018359 0.005160 0.983588 0.005917 0.005335 0.002256 0.960488 0.005733 0.031524 0.003735 0.283214 0.123762 0.589290 0.024383 0.379981 0.542999 0.052638 0.589290 0.123762 0.283214 0.003735 0.031524 0.005733 0.960488 0.002256 0.005335 0.005917 0.983588 0.005160 0.018359 0.697188 0.272676 0.011777 0.328286 0.093173 0.334133 0.244408 0.563777 0.145250 0.140240 0.150733 0.263206 0.222321 0.242153 0.272320 Consensus sequence: HHHGCCTSAGGCDAD Reverse complement motif 0.272320 0.222321 0.242153 0.263206 0.150733 0.145250 0.140240 0.563777 0.328286 0.334133 0.093173 0.244408 0.018359 0.272676 0.697188 0.011777 0.005335 0.983588 0.005917 0.005160 0.031524 0.960488 0.005733 0.002256 0.003735 0.123762 0.283214 0.589290 0.024383 0.542999 0.379981 0.052638 0.589290 0.283214 0.123762 0.003735 0.002256 0.005733 0.960488 0.031524 0.005160 0.005917 0.983588 0.005335 0.011777 0.697188 0.272676 0.018359 0.352801 0.281323 0.073013 0.292862 0.333284 0.211816 0.194359 0.260541 0.294567 0.172742 0.163174 0.369517 Consensus sequence: DTHGCCTSAGGCHHH Alignment: HHHGCCTSAGGCDAD ---GCCBBVRGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Reverse Complement Reverse Complement Backward 9 9 0.020368 Species: Mus musculus Original motif 0.150668 0.131779 0.245665 0.471887 0.316817 0.287314 0.150829 0.245040 0.256473 0.409066 0.109700 0.224761 0.210646 0.220222 0.345010 0.224122 0.166679 0.508939 0.081676 0.242705 0.049351 0.759380 0.088489 0.102780 0.047598 0.785546 0.121957 0.044898 0.004606 0.944933 0.034696 0.015764 0.040252 0.050652 0.890382 0.018713 0.003038 0.913699 0.022449 0.060814 0.028672 0.941477 0.012276 0.017575 0.635243 0.139731 0.110495 0.114531 0.240016 0.385948 0.182848 0.191188 0.210430 0.274127 0.085171 0.430272 0.088118 0.454598 0.208989 0.248295 0.181269 0.265028 0.149023 0.404680 0.101070 0.252682 0.368542 0.277706 Consensus sequence: DHHBCCCCGCCAHHBHB Reverse complement motif 0.101070 0.368542 0.252682 0.277706 0.404680 0.265028 0.149023 0.181269 0.088118 0.208989 0.454598 0.248295 0.430272 0.274127 0.085171 0.210430 0.240016 0.182848 0.385948 0.191188 0.114531 0.139731 0.110495 0.635243 0.028672 0.012276 0.941477 0.017575 0.003038 0.022449 0.913699 0.060814 0.040252 0.890382 0.050652 0.018713 0.004606 0.034696 0.944933 0.015764 0.047598 0.121957 0.785546 0.044898 0.049351 0.088489 0.759380 0.102780 0.166679 0.081676 0.508939 0.242705 0.210646 0.345010 0.220222 0.224122 0.256473 0.109700 0.409066 0.224761 0.245040 0.287314 0.150829 0.316817 0.471887 0.131779 0.245665 0.150668 Consensus sequence: BHBHDTGGCGGGGBDHD Alignment: BHBHDTGGCGGGGBDHD SCMVBBGGC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_secondary Reverse Complement Reverse Complement Forward 1 9 0.021706 Species: Mus musculus Original motif 0.265095 0.268267 0.222997 0.243641 0.200676 0.255224 0.341788 0.202312 0.178293 0.362068 0.104617 0.355022 0.351308 0.049870 0.101991 0.496832 0.114543 0.445994 0.008584 0.430879 0.113589 0.020854 0.846807 0.018750 0.004661 0.132010 0.859240 0.004088 0.030896 0.962007 0.004017 0.003080 0.006194 0.002090 0.965564 0.026152 0.008009 0.911831 0.077009 0.003151 0.029519 0.830096 0.011333 0.129053 0.764710 0.016406 0.088627 0.130257 0.530327 0.265186 0.100721 0.103765 0.331689 0.153148 0.308482 0.206682 0.332536 0.311591 0.232118 0.123755 0.175189 0.233372 0.375563 0.215876 0.183884 0.334856 0.283993 0.197267 Consensus sequence: HBHWYGGCGCCAMDVBB Reverse complement motif 0.183884 0.283993 0.334856 0.197267 0.175189 0.375563 0.233372 0.215876 0.123755 0.311591 0.232118 0.332536 0.206682 0.153148 0.308482 0.331689 0.103765 0.265186 0.100721 0.530327 0.130257 0.016406 0.088627 0.764710 0.029519 0.011333 0.830096 0.129053 0.008009 0.077009 0.911831 0.003151 0.006194 0.965564 0.002090 0.026152 0.030896 0.004017 0.962007 0.003080 0.004661 0.859240 0.132010 0.004088 0.113589 0.846807 0.020854 0.018750 0.114543 0.008584 0.445994 0.430879 0.496832 0.049870 0.101991 0.351308 0.178293 0.104617 0.362068 0.355022 0.200676 0.341788 0.255224 0.202312 0.265095 0.222997 0.268267 0.243641 Consensus sequence: BBBDYTGGCGCCKWDBD Alignment: BBBDYTGGCGCCKWDBD SCMVBBGGC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_secondary Original Motif Original Motif Forward 3 9 0.023478 Species: Mus musculus Original motif 0.198427 0.243196 0.159241 0.399136 0.267754 0.388187 0.116811 0.227248 0.448284 0.056403 0.414623 0.080691 0.031469 0.826323 0.055436 0.086772 0.035527 0.756642 0.022985 0.184845 0.127338 0.316078 0.155806 0.400778 0.135021 0.313650 0.287760 0.263570 0.418892 0.082297 0.068352 0.430460 0.201062 0.044735 0.711358 0.042845 0.038934 0.022320 0.903763 0.034982 0.201790 0.065554 0.460526 0.272130 0.006890 0.786923 0.061853 0.144334 0.460666 0.103658 0.196452 0.239224 0.092272 0.204611 0.390375 0.312742 Consensus sequence: HHRCCBBWGGDCDB Reverse complement motif 0.092272 0.390375 0.204611 0.312742 0.239224 0.103658 0.196452 0.460666 0.006890 0.061853 0.786923 0.144334 0.201790 0.460526 0.065554 0.272130 0.038934 0.903763 0.022320 0.034982 0.201062 0.711358 0.044735 0.042845 0.430460 0.082297 0.068352 0.418892 0.135021 0.287760 0.313650 0.263570 0.400778 0.316078 0.155806 0.127338 0.035527 0.022985 0.756642 0.184845 0.031469 0.055436 0.826323 0.086772 0.080691 0.056403 0.414623 0.448284 0.267754 0.116811 0.388187 0.227248 0.399136 0.243196 0.159241 0.198427 Consensus sequence: BDGHCCWBVGGKDH Alignment: HHRCCBBWGGDCDB --GCCBBVRGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_secondary Original Motif Original Motif Backward 1 9 0.026642 Species: Mus musculus Original motif 0.386646 0.259902 0.253791 0.099661 0.421388 0.207885 0.231243 0.139483 0.257377 0.193145 0.314893 0.234586 0.061783 0.371675 0.214607 0.351935 0.610889 0.007047 0.106287 0.275777 0.181496 0.007153 0.071824 0.739527 0.759998 0.222078 0.005710 0.012214 0.003816 0.977244 0.004175 0.014765 0.037124 0.002582 0.946042 0.014252 0.009124 0.982167 0.005065 0.003644 0.007023 0.980091 0.008044 0.004842 0.005328 0.930742 0.002828 0.061102 0.389804 0.299794 0.050877 0.259525 0.507764 0.121280 0.163196 0.207759 0.296269 0.307462 0.196230 0.200039 0.301339 0.231088 0.150226 0.317347 0.185149 0.176068 0.292944 0.345838 Consensus sequence: VVDBATACGCCCHAHHD Reverse complement motif 0.345838 0.176068 0.292944 0.185149 0.317347 0.231088 0.150226 0.301339 0.296269 0.196230 0.307462 0.200039 0.207759 0.121280 0.163196 0.507764 0.259525 0.299794 0.050877 0.389804 0.005328 0.002828 0.930742 0.061102 0.007023 0.008044 0.980091 0.004842 0.009124 0.005065 0.982167 0.003644 0.037124 0.946042 0.002582 0.014252 0.003816 0.004175 0.977244 0.014765 0.012214 0.222078 0.005710 0.759998 0.739527 0.007153 0.071824 0.181496 0.275777 0.007047 0.106287 0.610889 0.061783 0.214607 0.371675 0.351935 0.257377 0.314893 0.193145 0.234586 0.139483 0.207885 0.231243 0.421388 0.099661 0.259902 0.253791 0.386646 Consensus sequence: DHDTHGGGCGTATBHBB Alignment: VVDBATACGCCCHAHHD --------GCCBBVRGS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 32 Motif name: SP1 Original motif 0.000000 0.914286 0.028571 0.057143 0.000000 0.857143 0.028571 0.114286 0.000000 1.000000 0.000000 0.000000 0.114286 0.771429 0.000000 0.114286 0.057143 0.142857 0.428571 0.371429 0.000000 0.800000 0.028571 0.171429 0.028571 0.885714 0.000000 0.085714 0.000000 0.685714 0.085714 0.228571 0.171429 0.714286 0.000000 0.114286 0.085714 0.742857 0.085714 0.085714 Consensus sequence: CCCCKCCCCC Reserve complement motif 0.085714 0.085714 0.742857 0.085714 0.171429 0.000000 0.714286 0.114286 0.000000 0.085714 0.685714 0.228571 0.028571 0.000000 0.885714 0.085714 0.000000 0.028571 0.800000 0.171429 0.057143 0.428571 0.142857 0.371429 0.114286 0.000000 0.771429 0.114286 0.000000 0.000000 1.000000 0.000000 0.000000 0.028571 0.857143 0.114286 0.000000 0.028571 0.914286 0.057143 Consensus sequence: GGGGGYGGGG ************************************************************************ Best Matches for Motif ID 32 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Original Motif Original Motif Backward 4 10 0.023102 Species: Mus musculus Original motif 0.201535 0.165213 0.201324 0.431929 0.136153 0.443451 0.179132 0.241264 0.263149 0.555137 0.067983 0.113731 0.142183 0.737634 0.045722 0.074461 0.044982 0.884112 0.045356 0.025549 0.246434 0.590578 0.022655 0.140333 0.123049 0.591257 0.033072 0.252622 0.018153 0.944742 0.010254 0.026851 0.035459 0.953844 0.003988 0.006709 0.020000 0.954344 0.005966 0.019690 0.015299 0.964390 0.006755 0.013557 0.028565 0.936152 0.011660 0.023623 0.300127 0.517309 0.029700 0.152863 0.159063 0.513443 0.051834 0.275660 0.158172 0.647055 0.133256 0.061516 Consensus sequence: DBCCCCCCCCCCMYC Reverse complement motif 0.158172 0.133256 0.647055 0.061516 0.159063 0.051834 0.513443 0.275660 0.300127 0.029700 0.517309 0.152863 0.028565 0.011660 0.936152 0.023623 0.015299 0.006755 0.964390 0.013557 0.020000 0.005966 0.954344 0.019690 0.035459 0.003988 0.953844 0.006709 0.018153 0.010254 0.944742 0.026851 0.123049 0.033072 0.591257 0.252622 0.246434 0.022655 0.590578 0.140333 0.044982 0.045356 0.884112 0.025549 0.142183 0.045722 0.737634 0.074461 0.263149 0.067983 0.555137 0.113731 0.136153 0.179132 0.443451 0.241264 0.431929 0.165213 0.201324 0.201535 Consensus sequence: GKRGGGGGGGGGGBD Alignment: DBCCCCCCCCCCMYC --CCCCKCCCCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Original Motif Backward 3 10 0.030321 Species: Mus musculus Original motif 0.204514 0.198353 0.171218 0.425915 0.167188 0.296785 0.246082 0.289946 0.267330 0.148001 0.398674 0.185994 0.549386 0.060167 0.337100 0.053347 0.050746 0.900013 0.022169 0.027073 0.037905 0.920332 0.008360 0.033403 0.410356 0.566702 0.016267 0.006675 0.009526 0.982354 0.001060 0.007060 0.204292 0.001084 0.748567 0.046056 0.003955 0.988490 0.002821 0.004735 0.004264 0.988826 0.004311 0.002598 0.002758 0.929549 0.001244 0.066448 0.260332 0.421683 0.024720 0.293265 0.184798 0.247697 0.085237 0.482268 0.347537 0.197344 0.139961 0.315159 0.255281 0.166620 0.242297 0.335802 Consensus sequence: HBDRCCMCGCCCHHHD Reverse complement motif 0.335802 0.166620 0.242297 0.255281 0.315159 0.197344 0.139961 0.347537 0.482268 0.247697 0.085237 0.184798 0.260332 0.024720 0.421683 0.293265 0.002758 0.001244 0.929549 0.066448 0.004264 0.004311 0.988826 0.002598 0.003955 0.002821 0.988490 0.004735 0.204292 0.748567 0.001084 0.046056 0.009526 0.001060 0.982354 0.007060 0.410356 0.016267 0.566702 0.006675 0.037905 0.008360 0.920332 0.033403 0.050746 0.022169 0.900013 0.027073 0.053347 0.060167 0.337100 0.549386 0.267330 0.398674 0.148001 0.185994 0.167188 0.246082 0.296785 0.289946 0.425915 0.198353 0.171218 0.204514 Consensus sequence: DHHDGGGCGRGGKHBH Alignment: HBDRCCMCGCCCHHHD ----CCCCKCCCCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondary Reverse Complement Reverse Complement Forward 5 10 0.032301 Species: Mus musculus Original motif 0.162979 0.284781 0.237433 0.314807 0.182449 0.447584 0.069464 0.300502 0.298973 0.261014 0.213211 0.226802 0.136039 0.433062 0.144274 0.286625 0.180084 0.395933 0.158565 0.265418 0.069354 0.748510 0.068898 0.113238 0.060485 0.717828 0.075333 0.146354 0.023280 0.071762 0.645500 0.259457 0.166896 0.749762 0.062730 0.020612 0.050401 0.775248 0.089072 0.085279 0.103847 0.767557 0.068804 0.059791 0.064815 0.748318 0.114588 0.072280 0.340921 0.071942 0.242981 0.344157 0.301967 0.263512 0.165927 0.268594 0.479800 0.222955 0.118441 0.178803 0.229469 0.283621 0.143099 0.343811 0.261733 0.180191 0.169905 0.388170 Consensus sequence: BHHBHCCGCCCCDHHHH Reverse complement motif 0.388170 0.180191 0.169905 0.261733 0.343811 0.283621 0.143099 0.229469 0.178803 0.222955 0.118441 0.479800 0.268594 0.263512 0.165927 0.301967 0.344157 0.071942 0.242981 0.340921 0.064815 0.114588 0.748318 0.072280 0.103847 0.068804 0.767557 0.059791 0.050401 0.089072 0.775248 0.085279 0.166896 0.062730 0.749762 0.020612 0.023280 0.645500 0.071762 0.259457 0.060485 0.075333 0.717828 0.146354 0.069354 0.068898 0.748510 0.113238 0.180084 0.158565 0.395933 0.265418 0.136039 0.144274 0.433062 0.286625 0.226802 0.261014 0.213211 0.298973 0.182449 0.069464 0.447584 0.300502 0.314807 0.284781 0.237433 0.162979 Consensus sequence: HHHHDGGGGCGGDBHDV Alignment: HHHHDGGGGCGGDBHDV ----GGGGGYGGGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_secondary Reverse Complement Reverse Complement Forward 3 10 0.034097 Species: Mus musculus Original motif 0.114462 0.345602 0.289353 0.250583 0.192593 0.250844 0.116250 0.440313 0.338838 0.304929 0.195843 0.160390 0.312051 0.115094 0.162465 0.410390 0.143975 0.600492 0.123348 0.132185 0.078751 0.715072 0.135182 0.070995 0.146191 0.685571 0.069799 0.098439 0.137287 0.646078 0.126428 0.090207 0.335099 0.092260 0.371510 0.201131 0.033090 0.631176 0.074278 0.261456 0.117516 0.619336 0.100946 0.162202 0.114769 0.627362 0.089839 0.168031 0.195787 0.252057 0.220803 0.331353 0.415355 0.120731 0.281372 0.182542 0.111178 0.217079 0.245769 0.425974 0.191517 0.296952 0.153370 0.358162 Consensus sequence: BHVDCCCCDCCCBDBH Reverse complement motif 0.358162 0.296952 0.153370 0.191517 0.425974 0.217079 0.245769 0.111178 0.182542 0.120731 0.281372 0.415355 0.331353 0.252057 0.220803 0.195787 0.114769 0.089839 0.627362 0.168031 0.117516 0.100946 0.619336 0.162202 0.033090 0.074278 0.631176 0.261456 0.335099 0.371510 0.092260 0.201131 0.137287 0.126428 0.646078 0.090207 0.146191 0.069799 0.685571 0.098439 0.078751 0.135182 0.715072 0.070995 0.143975 0.123348 0.600492 0.132185 0.410390 0.115094 0.162465 0.312051 0.160390 0.304929 0.195843 0.338838 0.440313 0.250844 0.116250 0.192593 0.114462 0.289353 0.345602 0.250583 Consensus sequence: HVDVGGGHGGGGDBHB Alignment: HVDVGGGHGGGGDBHB --GGGGGYGGGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_secondary Reverse Complement Reverse Complement Forward 5 10 0.035105 Species: Mus musculus Original motif 0.316572 0.278382 0.152556 0.252490 0.167141 0.257034 0.259894 0.315931 0.175523 0.325956 0.259996 0.238525 0.165052 0.385677 0.239449 0.209822 0.069489 0.782718 0.072454 0.075339 0.049943 0.800636 0.031988 0.117433 0.223382 0.060306 0.552691 0.163621 0.072944 0.818252 0.034406 0.074398 0.070535 0.845127 0.062712 0.021626 0.031035 0.859354 0.055424 0.054187 0.063668 0.798503 0.067274 0.070554 0.348488 0.030697 0.197179 0.423636 0.307220 0.256470 0.181009 0.255301 0.460933 0.285057 0.090258 0.163752 0.315798 0.228431 0.171135 0.284637 0.374527 0.268328 0.198810 0.158335 Consensus sequence: HBBBCCGCCCCWHHHV Reverse complement motif 0.158335 0.268328 0.198810 0.374527 0.284637 0.228431 0.171135 0.315798 0.163752 0.285057 0.090258 0.460933 0.255301 0.256470 0.181009 0.307220 0.423636 0.030697 0.197179 0.348488 0.063668 0.067274 0.798503 0.070554 0.031035 0.055424 0.859354 0.054187 0.070535 0.062712 0.845127 0.021626 0.072944 0.034406 0.818252 0.074398 0.223382 0.552691 0.060306 0.163621 0.049943 0.031988 0.800636 0.117433 0.069489 0.072454 0.782718 0.075339 0.165052 0.239449 0.385677 0.209822 0.175523 0.259996 0.325956 0.238525 0.315931 0.257034 0.259894 0.167141 0.252490 0.278382 0.152556 0.316572 Consensus sequence: BHHHWGGGGCGGBBVH Alignment: BHHHWGGGGCGGBBVH ----GGGGGYGGGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondary Reverse Complement Reverse Complement Forward 7 10 0.039044 Species: Mus musculus Original motif 0.533199 0.080715 0.330435 0.055650 0.152031 0.212841 0.110234 0.524893 0.223934 0.264217 0.087037 0.424811 0.115097 0.339994 0.343861 0.201048 0.124993 0.418259 0.365642 0.091106 0.158365 0.292428 0.088361 0.460847 0.165479 0.561778 0.022254 0.250489 0.136873 0.259822 0.579763 0.023543 0.109570 0.747495 0.055128 0.087807 0.061912 0.792986 0.109031 0.036071 0.508703 0.267806 0.169766 0.053725 0.040912 0.838888 0.057470 0.062730 0.330554 0.606077 0.016192 0.047177 0.068079 0.563969 0.029742 0.338209 0.388799 0.291667 0.191284 0.128249 0.183283 0.578079 0.171100 0.067538 0.165163 0.097206 0.631377 0.106253 0.128564 0.435496 0.253275 0.182665 0.103395 0.088222 0.234758 0.573625 0.432879 0.276641 0.155895 0.134585 0.339199 0.148928 0.311036 0.200836 0.211958 0.298526 0.158443 0.331072 Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Reverse complement motif 0.331072 0.298526 0.158443 0.211958 0.200836 0.148928 0.311036 0.339199 0.134585 0.276641 0.155895 0.432879 0.573625 0.088222 0.234758 0.103395 0.128564 0.253275 0.435496 0.182665 0.165163 0.631377 0.097206 0.106253 0.183283 0.171100 0.578079 0.067538 0.128249 0.291667 0.191284 0.388799 0.068079 0.029742 0.563969 0.338209 0.330554 0.016192 0.606077 0.047177 0.040912 0.057470 0.838888 0.062730 0.053725 0.267806 0.169766 0.508703 0.061912 0.109031 0.792986 0.036071 0.109570 0.055128 0.747495 0.087807 0.136873 0.579763 0.259822 0.023543 0.165479 0.022254 0.561778 0.250489 0.460847 0.292428 0.088361 0.158365 0.124993 0.365642 0.418259 0.091106 0.115097 0.343861 0.339994 0.201048 0.424811 0.264217 0.087037 0.223934 0.524893 0.212841 0.110234 0.152031 0.055650 0.080715 0.330435 0.533199 Consensus sequence: HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK ------GGGGGYGGGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Reverse Complement Reverse Complement Backward 7 10 0.039336 Species: Mus musculus Original motif 0.168550 0.345968 0.396524 0.088958 0.038113 0.360882 0.114042 0.486963 0.349356 0.180599 0.051416 0.418629 0.258773 0.332518 0.244932 0.163778 0.371663 0.208591 0.263136 0.156609 0.225440 0.321741 0.175932 0.276887 0.100827 0.656850 0.018644 0.223679 0.494140 0.155427 0.327424 0.023009 0.105642 0.805846 0.027712 0.060800 0.065110 0.845072 0.058046 0.031772 0.649343 0.110180 0.180680 0.059797 0.064269 0.853604 0.066860 0.015268 0.437421 0.533797 0.016833 0.011948 0.121694 0.787708 0.016177 0.074421 0.625382 0.066925 0.266070 0.041623 0.117819 0.608153 0.165139 0.108889 0.145639 0.102001 0.604926 0.147434 0.521188 0.184986 0.064607 0.229219 0.180371 0.274237 0.096591 0.448801 0.071055 0.455813 0.332817 0.140315 0.084503 0.199982 0.448293 0.267222 0.389451 0.169545 0.155507 0.285497 0.424314 0.227621 0.101210 0.246855 Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Reverse complement motif 0.246855 0.227621 0.101210 0.424314 0.285497 0.169545 0.155507 0.389451 0.084503 0.448293 0.199982 0.267222 0.071055 0.332817 0.455813 0.140315 0.448801 0.274237 0.096591 0.180371 0.229219 0.184986 0.064607 0.521188 0.145639 0.604926 0.102001 0.147434 0.117819 0.165139 0.608153 0.108889 0.041623 0.066925 0.266070 0.625382 0.121694 0.016177 0.787708 0.074421 0.437421 0.016833 0.533797 0.011948 0.064269 0.066860 0.853604 0.015268 0.059797 0.110180 0.180680 0.649343 0.065110 0.058046 0.845072 0.031772 0.105642 0.027712 0.805846 0.060800 0.023009 0.155427 0.327424 0.494140 0.100827 0.018644 0.656850 0.223679 0.225440 0.175932 0.321741 0.276887 0.156609 0.208591 0.263136 0.371663 0.258773 0.244932 0.332518 0.163778 0.418629 0.180599 0.051416 0.349356 0.486963 0.360882 0.114042 0.038113 0.168550 0.396524 0.345968 0.088958 Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV Alignment: HHBSHTCGTGRGTGGKGDBVWMV -------GGGGGYGGGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Original Motif Original Motif Backward 4 10 0.041386 Species: Mus musculus Original motif 0.150668 0.131779 0.245665 0.471887 0.316817 0.287314 0.150829 0.245040 0.256473 0.409066 0.109700 0.224761 0.210646 0.220222 0.345010 0.224122 0.166679 0.508939 0.081676 0.242705 0.049351 0.759380 0.088489 0.102780 0.047598 0.785546 0.121957 0.044898 0.004606 0.944933 0.034696 0.015764 0.040252 0.050652 0.890382 0.018713 0.003038 0.913699 0.022449 0.060814 0.028672 0.941477 0.012276 0.017575 0.635243 0.139731 0.110495 0.114531 0.240016 0.385948 0.182848 0.191188 0.210430 0.274127 0.085171 0.430272 0.088118 0.454598 0.208989 0.248295 0.181269 0.265028 0.149023 0.404680 0.101070 0.252682 0.368542 0.277706 Consensus sequence: DHHBCCCCGCCAHHBHB Reverse complement motif 0.101070 0.368542 0.252682 0.277706 0.404680 0.265028 0.149023 0.181269 0.088118 0.208989 0.454598 0.248295 0.430272 0.274127 0.085171 0.210430 0.240016 0.182848 0.385948 0.191188 0.114531 0.139731 0.110495 0.635243 0.028672 0.012276 0.941477 0.017575 0.003038 0.022449 0.913699 0.060814 0.040252 0.890382 0.050652 0.018713 0.004606 0.034696 0.944933 0.015764 0.047598 0.121957 0.785546 0.044898 0.049351 0.088489 0.759380 0.102780 0.166679 0.081676 0.508939 0.242705 0.210646 0.345010 0.220222 0.224122 0.256473 0.109700 0.409066 0.224761 0.245040 0.287314 0.150829 0.316817 0.471887 0.131779 0.245665 0.150668 Consensus sequence: BHBHDTGGCGGGGBDHD Alignment: DHHBCCCCGCCAHHBHB ----CCCCKCCCCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Original Motif Original Motif Forward 4 10 0.041895 Species: Mus musculus Original motif 0.136946 0.396508 0.135309 0.331236 0.185528 0.417538 0.215409 0.181525 0.171276 0.341901 0.172832 0.313991 0.145641 0.590572 0.146376 0.117412 0.138035 0.660416 0.114016 0.087533 0.222728 0.750532 0.007528 0.019212 0.024633 0.963314 0.001894 0.010159 0.009557 0.979956 0.000642 0.009844 0.010416 0.977424 0.000541 0.011619 0.026401 0.956740 0.001544 0.015314 0.195502 0.755959 0.011060 0.037480 0.491291 0.364785 0.025613 0.118311 0.305153 0.398160 0.071680 0.225008 0.253497 0.232647 0.213246 0.300610 0.156964 0.297876 0.144683 0.400477 0.179549 0.292514 0.319462 0.208475 Consensus sequence: HVBCCCCCCCCMHHHB Reverse complement motif 0.179549 0.319462 0.292514 0.208475 0.400477 0.297876 0.144683 0.156964 0.300610 0.232647 0.213246 0.253497 0.305153 0.071680 0.398160 0.225008 0.118311 0.364785 0.025613 0.491291 0.195502 0.011060 0.755959 0.037480 0.026401 0.001544 0.956740 0.015314 0.010416 0.000541 0.977424 0.011619 0.009557 0.000642 0.979956 0.009844 0.024633 0.001894 0.963314 0.010159 0.222728 0.007528 0.750532 0.019212 0.138035 0.114016 0.660416 0.087533 0.145641 0.146376 0.590572 0.117412 0.171276 0.172832 0.341901 0.313991 0.185528 0.215409 0.417538 0.181525 0.136946 0.135309 0.396508 0.331236 Consensus sequence: BHHDYGGGGGGGGBVD Alignment: HVBCCCCCCCCMHHHB ---CCCCKCCCCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Original Motif Original Motif Forward 3 10 0.042071 Species: Mus musculus Original motif 0.155386 0.223380 0.374454 0.246780 0.247106 0.159582 0.345111 0.248201 0.238889 0.258354 0.165304 0.337454 0.255612 0.489586 0.051621 0.203182 0.450100 0.545383 0.001071 0.003447 0.003704 0.991007 0.002456 0.002833 0.035504 0.001814 0.928129 0.034553 0.001494 0.991406 0.003414 0.003686 0.003045 0.990628 0.005182 0.001145 0.000990 0.963237 0.001215 0.034557 0.148016 0.838396 0.000666 0.012922 0.014261 0.905847 0.007200 0.072692 0.083394 0.270068 0.058368 0.588170 0.149141 0.286783 0.142802 0.421274 0.204851 0.347195 0.253356 0.194597 0.184442 0.299908 0.194408 0.321242 0.125793 0.380109 0.245318 0.248780 Consensus sequence: BDHHMCGCCCCCTHVBB Reverse complement motif 0.125793 0.245318 0.380109 0.248780 0.321242 0.299908 0.194408 0.184442 0.204851 0.253356 0.347195 0.194597 0.421274 0.286783 0.142802 0.149141 0.588170 0.270068 0.058368 0.083394 0.014261 0.007200 0.905847 0.072692 0.148016 0.000666 0.838396 0.012922 0.000990 0.001215 0.963237 0.034557 0.003045 0.005182 0.990628 0.001145 0.001494 0.003414 0.991406 0.003686 0.035504 0.928129 0.001814 0.034553 0.003704 0.002456 0.991007 0.002833 0.450100 0.001071 0.545383 0.003447 0.255612 0.051621 0.489586 0.203182 0.337454 0.258354 0.165304 0.238889 0.247106 0.345111 0.159582 0.248201 0.155386 0.374454 0.223380 0.246780 Consensus sequence: BVVHAGGGGGCGRDHHB Alignment: BDHHMCGCCCCCTHVBB --CCCCKCCCCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 33 Motif name: RXRAVDR Original motif 0.300000 0.000000 0.700000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.900000 0.100000 0.000000 0.000000 0.000000 1.000000 0.000000 0.900000 0.000000 0.100000 0.900000 0.000000 0.100000 0.000000 0.400000 0.200000 0.000000 0.400000 0.200000 0.400000 0.200000 0.200000 0.200000 0.000000 0.800000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.100000 0.000000 0.000000 0.900000 0.000000 0.900000 0.000000 0.100000 0.700000 0.100000 0.200000 0.000000 Consensus sequence: GGGTCAWBGRGTTCA Reserve complement motif 0.000000 0.100000 0.200000 0.700000 0.000000 0.000000 0.900000 0.100000 0.900000 0.000000 0.000000 0.100000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.200000 0.800000 0.000000 0.000000 0.200000 0.200000 0.400000 0.200000 0.400000 0.200000 0.000000 0.400000 0.000000 0.000000 0.100000 0.900000 0.000000 0.000000 0.900000 0.100000 1.000000 0.000000 0.000000 0.000000 0.000000 0.900000 0.000000 0.100000 0.000000 1.000000 0.000000 0.000000 0.300000 0.700000 0.000000 0.000000 Consensus sequence: TGAACKCBWTGACCC ************************************************************************ Best Matches for Motif ID 33 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00037 Zfp105_secondary Original Motif Original Motif Backward 1 15 0.063164 Species: Mus musculus Original motif 0.266678 0.210793 0.270357 0.252172 0.060513 0.387388 0.139940 0.412159 0.129835 0.094669 0.581455 0.194041 0.222891 0.216518 0.374389 0.186202 0.051470 0.183173 0.261264 0.504093 0.033295 0.098623 0.075218 0.792864 0.159222 0.757734 0.066213 0.016831 0.909619 0.041577 0.030716 0.018087 0.790897 0.139370 0.044203 0.025531 0.016549 0.121838 0.111434 0.750178 0.747907 0.043147 0.179106 0.029840 0.696917 0.099750 0.098316 0.105017 0.132206 0.270741 0.232896 0.364158 0.140809 0.132229 0.164933 0.562029 0.054822 0.313780 0.179755 0.451644 0.144402 0.139143 0.255283 0.461171 0.263219 0.160957 0.382446 0.193379 Consensus sequence: DYGVKTCAATAABTYDD Reverse complement motif 0.263219 0.382446 0.160957 0.193379 0.461171 0.139143 0.255283 0.144402 0.451644 0.313780 0.179755 0.054822 0.562029 0.132229 0.164933 0.140809 0.364158 0.270741 0.232896 0.132206 0.105017 0.099750 0.098316 0.696917 0.029840 0.043147 0.179106 0.747907 0.750178 0.121838 0.111434 0.016549 0.025531 0.139370 0.044203 0.790897 0.018087 0.041577 0.030716 0.909619 0.159222 0.066213 0.757734 0.016831 0.792864 0.098623 0.075218 0.033295 0.504093 0.183173 0.261264 0.051470 0.222891 0.374389 0.216518 0.186202 0.129835 0.581455 0.094669 0.194041 0.412159 0.387388 0.139940 0.060513 0.266678 0.270357 0.210793 0.252172 Consensus sequence: HDMAVTTATTGARVCMH Alignment: DYGVKTCAATAABTYDD --GGGTCAWBGRGTTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00044 Mafk_primary Reverse Complement Original Motif Backward 1 15 0.063967 Species: Mus musculus Original motif 0.245931 0.193118 0.199428 0.361523 0.489106 0.078574 0.157014 0.275306 0.744659 0.025715 0.102440 0.127186 0.677561 0.030532 0.064134 0.227772 0.621949 0.037389 0.034818 0.305844 0.394828 0.100590 0.123295 0.381287 0.040491 0.082155 0.007425 0.869929 0.023425 0.010118 0.934562 0.031895 0.108761 0.847231 0.005930 0.038078 0.049587 0.025925 0.010216 0.914271 0.048851 0.008289 0.821725 0.121135 0.919694 0.018019 0.017253 0.045033 0.013536 0.716811 0.037362 0.232291 0.148097 0.100721 0.092846 0.658336 0.185674 0.220883 0.168608 0.424835 Consensus sequence: DWAAAWTGCTGACTH Reverse complement motif 0.424835 0.220883 0.168608 0.185674 0.658336 0.100721 0.092846 0.148097 0.013536 0.037362 0.716811 0.232291 0.045033 0.018019 0.017253 0.919694 0.048851 0.821725 0.008289 0.121135 0.914271 0.025925 0.010216 0.049587 0.108761 0.005930 0.847231 0.038078 0.023425 0.934562 0.010118 0.031895 0.869929 0.082155 0.007425 0.040491 0.381287 0.100590 0.123295 0.394828 0.305844 0.037389 0.034818 0.621949 0.227772 0.030532 0.064134 0.677561 0.127186 0.025715 0.102440 0.744659 0.275306 0.078574 0.157014 0.489106 0.361523 0.193118 0.199428 0.245931 Consensus sequence: HAGTCAGCAWTTTWD Alignment: DWAAAWTGCTGACTH TGAACKCBWTGACCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Original Motif Original Motif Forward 9 15 0.068282 Species: Mus musculus Original motif 0.204923 0.208846 0.365383 0.220848 0.294304 0.300143 0.167287 0.238266 0.109711 0.619514 0.117379 0.153396 0.178979 0.378580 0.230177 0.212264 0.159594 0.542602 0.118178 0.179627 0.125206 0.430074 0.151826 0.292894 0.097692 0.709845 0.116956 0.075506 0.148292 0.565912 0.037632 0.248164 0.077951 0.034190 0.855503 0.032356 0.001657 0.001061 0.971877 0.025405 0.001926 0.001084 0.991712 0.005278 0.033031 0.012001 0.057796 0.897171 0.002723 0.002647 0.993348 0.001281 0.003261 0.000963 0.987199 0.008577 0.000611 0.090925 0.074857 0.833608 0.015299 0.978878 0.004949 0.000874 0.013368 0.600902 0.033485 0.352245 0.231949 0.149575 0.118804 0.499672 0.267580 0.186002 0.371242 0.175176 0.264884 0.223483 0.110082 0.401551 0.221365 0.170121 0.179559 0.428955 0.112997 0.692930 0.139981 0.054092 0.460305 0.207883 0.155111 0.176702 Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Reverse complement motif 0.176702 0.207883 0.155111 0.460305 0.112997 0.139981 0.692930 0.054092 0.428955 0.170121 0.179559 0.221365 0.401551 0.223483 0.110082 0.264884 0.267580 0.371242 0.186002 0.175176 0.499672 0.149575 0.118804 0.231949 0.013368 0.033485 0.600902 0.352245 0.015299 0.004949 0.978878 0.000874 0.833608 0.090925 0.074857 0.000611 0.003261 0.987199 0.000963 0.008577 0.002723 0.993348 0.002647 0.001281 0.897171 0.012001 0.057796 0.033031 0.001926 0.991712 0.001084 0.005278 0.001657 0.971877 0.001061 0.025405 0.077951 0.855503 0.034190 0.032356 0.148292 0.037632 0.565912 0.248164 0.097692 0.116956 0.709845 0.075506 0.125206 0.151826 0.430074 0.292894 0.159594 0.118178 0.542602 0.179627 0.178979 0.230177 0.378580 0.212264 0.109711 0.117379 0.619514 0.153396 0.294304 0.167287 0.300143 0.238266 0.204923 0.365383 0.208846 0.220848 Consensus sequence: HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH --------GGGTCAWBGRGTTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primary Reverse Complement Original Motif Forward 2 15 0.069950 Species: Mus musculus Original motif 0.472795 0.179227 0.091251 0.256726 0.036521 0.159743 0.204840 0.598896 0.164582 0.312805 0.221324 0.301289 0.237069 0.249050 0.293048 0.220833 0.401949 0.225181 0.229401 0.143469 0.161422 0.494334 0.252207 0.092036 0.252940 0.177721 0.369400 0.199939 0.119630 0.024651 0.849920 0.005798 0.000962 0.002398 0.990616 0.006023 0.937852 0.027016 0.034535 0.000597 0.008963 0.987756 0.000629 0.002652 0.001584 0.992898 0.002349 0.003169 0.956822 0.027342 0.002484 0.013352 0.009873 0.987759 0.000988 0.001381 0.016397 0.980856 0.000369 0.002378 0.081761 0.758555 0.038572 0.121112 0.371713 0.091838 0.448027 0.088423 0.111617 0.121913 0.683885 0.082585 0.334562 0.102916 0.436488 0.126034 0.210362 0.101261 0.238339 0.450037 0.169041 0.271583 0.320799 0.238576 0.140316 0.049885 0.735236 0.074563 Consensus sequence: HTBVVVDGGACCACCCRGRDBG Reverse complement motif 0.140316 0.735236 0.049885 0.074563 0.169041 0.320799 0.271583 0.238576 0.450037 0.101261 0.238339 0.210362 0.334562 0.436488 0.102916 0.126034 0.111617 0.683885 0.121913 0.082585 0.371713 0.448027 0.091838 0.088423 0.081761 0.038572 0.758555 0.121112 0.016397 0.000369 0.980856 0.002378 0.009873 0.000988 0.987759 0.001381 0.013352 0.027342 0.002484 0.956822 0.001584 0.002349 0.992898 0.003169 0.008963 0.000629 0.987756 0.002652 0.000597 0.027016 0.034535 0.937852 0.000962 0.990616 0.002398 0.006023 0.119630 0.849920 0.024651 0.005798 0.252940 0.369400 0.177721 0.199939 0.161422 0.252207 0.494334 0.092036 0.143469 0.225181 0.229401 0.401949 0.237069 0.293048 0.249050 0.220833 0.164582 0.221324 0.312805 0.301289 0.598896 0.159743 0.204840 0.036521 0.256726 0.179227 0.091251 0.472795 Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH Alignment: HTBVVVDGGACCACCCRGRDBG -TGAACKCBWTGACCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Reverse Complement Reverse Complement Backward 1 15 0.071170 Species: Mus musculus Original motif 0.331499 0.188505 0.182841 0.297156 0.328961 0.213025 0.273530 0.184484 0.197213 0.129292 0.524914 0.148581 0.274491 0.226406 0.312118 0.186986 0.103231 0.393726 0.364988 0.138055 0.552594 0.166422 0.186262 0.094722 0.157618 0.064773 0.616497 0.161112 0.139166 0.176098 0.621185 0.063551 0.748420 0.062398 0.012447 0.176735 0.116584 0.009438 0.860326 0.013653 0.005030 0.003646 0.974877 0.016447 0.055257 0.007181 0.921760 0.015802 0.032748 0.058249 0.052709 0.856293 0.105606 0.872231 0.014370 0.007793 0.019480 0.497379 0.125899 0.357242 0.478582 0.269713 0.061464 0.190242 0.253985 0.287006 0.201320 0.257689 0.319384 0.210231 0.175842 0.294543 0.222123 0.287802 0.201294 0.288782 0.139951 0.376041 0.081133 0.402875 0.213450 0.343835 0.383676 0.059039 0.322294 0.355918 0.148062 0.173725 Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Reverse complement motif 0.322294 0.148062 0.355918 0.173725 0.213450 0.383676 0.343835 0.059039 0.402875 0.376041 0.081133 0.139951 0.288782 0.287802 0.201294 0.222123 0.294543 0.210231 0.175842 0.319384 0.253985 0.201320 0.287006 0.257689 0.190242 0.269713 0.061464 0.478582 0.019480 0.125899 0.497379 0.357242 0.105606 0.014370 0.872231 0.007793 0.856293 0.058249 0.052709 0.032748 0.055257 0.921760 0.007181 0.015802 0.005030 0.974877 0.003646 0.016447 0.116584 0.860326 0.009438 0.013653 0.176735 0.062398 0.012447 0.748420 0.139166 0.621185 0.176098 0.063551 0.157618 0.616497 0.064773 0.161112 0.094722 0.166422 0.186262 0.552594 0.103231 0.364988 0.393726 0.138055 0.274491 0.312118 0.226406 0.186986 0.197213 0.524914 0.129292 0.148581 0.184484 0.213025 0.273530 0.328961 0.297156 0.188505 0.182841 0.331499 Consensus sequence: DVMHHDHKGACCCTCCTSVCBH Alignment: DVMHHDHKGACCCTCCTSVCBH -------TGAACKCBWTGACCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primary Original Motif Reverse Complement Backward 2 15 0.072162 Species: Mus musculus Original motif 0.180868 0.321661 0.134642 0.362829 0.232215 0.134289 0.315356 0.318141 0.065068 0.093681 0.569842 0.271408 0.370822 0.229680 0.154738 0.244759 0.323039 0.182873 0.173588 0.320500 0.175039 0.266898 0.276080 0.281984 0.412669 0.147730 0.146326 0.293275 0.325953 0.028805 0.629596 0.015646 0.003017 0.001766 0.979711 0.015507 0.888973 0.040666 0.069420 0.000941 0.017309 0.979155 0.000899 0.002637 0.001732 0.988816 0.004856 0.004596 0.889763 0.078125 0.010384 0.021729 0.007566 0.987081 0.001421 0.003932 0.027797 0.966593 0.000878 0.004731 0.025816 0.867003 0.065749 0.041433 0.220658 0.075256 0.582904 0.121182 0.088946 0.283695 0.565345 0.062015 0.328012 0.241332 0.305901 0.124755 0.307302 0.137589 0.375928 0.179181 0.298752 0.231470 0.315255 0.154524 0.094565 0.142901 0.705696 0.056838 Consensus sequence: HDGHHBHRGACCACCCGSVDVG Reverse complement motif 0.094565 0.705696 0.142901 0.056838 0.298752 0.315255 0.231470 0.154524 0.307302 0.375928 0.137589 0.179181 0.124755 0.241332 0.305901 0.328012 0.088946 0.565345 0.283695 0.062015 0.220658 0.582904 0.075256 0.121182 0.025816 0.065749 0.867003 0.041433 0.027797 0.000878 0.966593 0.004731 0.007566 0.001421 0.987081 0.003932 0.021729 0.078125 0.010384 0.889763 0.001732 0.004856 0.988816 0.004596 0.017309 0.000899 0.979155 0.002637 0.000941 0.040666 0.069420 0.888973 0.003017 0.979711 0.001766 0.015507 0.325953 0.629596 0.028805 0.015646 0.293275 0.147730 0.146326 0.412669 0.281984 0.266898 0.276080 0.175039 0.320500 0.182873 0.173588 0.323039 0.244759 0.229680 0.154738 0.370822 0.065068 0.569842 0.093681 0.271408 0.318141 0.134289 0.315356 0.232215 0.362829 0.321661 0.134642 0.180868 Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH Alignment: CVHBSCGGGTGGTCMHVHHCDH ------GGGTCAWBGRGTTCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00045 Mafb_primary Reverse Complement Original Motif Forward 2 14 0.562034 Species: Mus musculus Original motif 0.420301 0.182299 0.161481 0.235919 0.593201 0.055751 0.202477 0.148571 0.653364 0.017008 0.054630 0.274998 0.339176 0.102943 0.050258 0.507622 0.171557 0.078698 0.267471 0.482273 0.044703 0.033212 0.003920 0.918165 0.010333 0.004451 0.972441 0.012775 0.034026 0.949298 0.004788 0.011889 0.016078 0.008878 0.004007 0.971037 0.020331 0.004077 0.929676 0.045916 0.975739 0.007450 0.005991 0.010819 0.012733 0.887375 0.018700 0.081192 0.259981 0.111885 0.243051 0.385083 0.327677 0.149969 0.094895 0.427459 0.541721 0.105923 0.242224 0.110132 0.258689 0.068305 0.493226 0.179779 0.306041 0.306854 0.168308 0.218798 Consensus sequence: HAAWDTGCTGACDWARH Reverse complement motif 0.306041 0.168308 0.306854 0.218798 0.258689 0.493226 0.068305 0.179779 0.110132 0.105923 0.242224 0.541721 0.427459 0.149969 0.094895 0.327677 0.385083 0.111885 0.243051 0.259981 0.012733 0.018700 0.887375 0.081192 0.010819 0.007450 0.005991 0.975739 0.020331 0.929676 0.004077 0.045916 0.971037 0.008878 0.004007 0.016078 0.034026 0.004788 0.949298 0.011889 0.010333 0.972441 0.004451 0.012775 0.918165 0.033212 0.003920 0.044703 0.482273 0.078698 0.267471 0.171557 0.507622 0.102943 0.050258 0.339176 0.274998 0.017008 0.054630 0.653364 0.148571 0.055751 0.202477 0.593201 0.235919 0.182299 0.161481 0.420301 Consensus sequence: DMTWDGTCAGCADWTTH Alignment: DMTWDGTCAGCADWTTH- -TGAACKCBWTGACCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00012 Bbx_primary Original Motif Reverse Complement Forward 2 14 0.562788 Species: Mus musculus Original motif 0.243561 0.194936 0.123150 0.438353 0.606538 0.159878 0.056476 0.177109 0.460256 0.141315 0.215237 0.183192 0.134434 0.033508 0.053304 0.778753 0.091333 0.019966 0.020704 0.867997 0.136284 0.753571 0.062560 0.047585 0.917109 0.031475 0.015472 0.035944 0.452244 0.084890 0.121698 0.341168 0.035944 0.015472 0.031475 0.917109 0.047585 0.062560 0.753571 0.136284 0.867997 0.020704 0.019966 0.091333 0.778753 0.053304 0.033508 0.134434 0.123705 0.284125 0.353361 0.238808 0.291282 0.126574 0.120737 0.461406 0.330626 0.062565 0.348868 0.257941 Consensus sequence: HADTTCAWTGAABWD Reverse complement motif 0.330626 0.348868 0.062565 0.257941 0.461406 0.126574 0.120737 0.291282 0.123705 0.353361 0.284125 0.238808 0.134434 0.053304 0.033508 0.778753 0.091333 0.020704 0.019966 0.867997 0.047585 0.753571 0.062560 0.136284 0.917109 0.015472 0.031475 0.035944 0.341168 0.084890 0.121698 0.452244 0.035944 0.031475 0.015472 0.917109 0.136284 0.062560 0.753571 0.047585 0.867997 0.019966 0.020704 0.091333 0.778753 0.033508 0.053304 0.134434 0.183192 0.141315 0.215237 0.460256 0.177109 0.159878 0.056476 0.606538 0.438353 0.194936 0.123150 0.243561 Consensus sequence: HWBTTCAWTGAADTH Alignment: HWBTTCAWTGAADTH- -GGGTCAWBGRGTTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_secondary Original Motif Reverse Complement Forward 1 14 0.565490 Species: Mus musculus Original motif 0.198427 0.243196 0.159241 0.399136 0.267754 0.388187 0.116811 0.227248 0.448284 0.056403 0.414623 0.080691 0.031469 0.826323 0.055436 0.086772 0.035527 0.756642 0.022985 0.184845 0.127338 0.316078 0.155806 0.400778 0.135021 0.313650 0.287760 0.263570 0.418892 0.082297 0.068352 0.430460 0.201062 0.044735 0.711358 0.042845 0.038934 0.022320 0.903763 0.034982 0.201790 0.065554 0.460526 0.272130 0.006890 0.786923 0.061853 0.144334 0.460666 0.103658 0.196452 0.239224 0.092272 0.204611 0.390375 0.312742 Consensus sequence: HHRCCBBWGGDCDB Reverse complement motif 0.092272 0.390375 0.204611 0.312742 0.239224 0.103658 0.196452 0.460666 0.006890 0.061853 0.786923 0.144334 0.201790 0.460526 0.065554 0.272130 0.038934 0.903763 0.022320 0.034982 0.201062 0.711358 0.044735 0.042845 0.430460 0.082297 0.068352 0.418892 0.135021 0.287760 0.313650 0.263570 0.400778 0.316078 0.155806 0.127338 0.035527 0.022985 0.756642 0.184845 0.031469 0.055436 0.826323 0.086772 0.080691 0.056403 0.414623 0.448284 0.267754 0.116811 0.388187 0.227248 0.399136 0.243196 0.159241 0.198427 Consensus sequence: BDGHCCWBVGGKDH Alignment: HHRCCBBWGGDCDB- GGGTCAWBGRGTTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Original Motif Reverse Complement Forward 4 14 0.565777 Species: Mus musculus Original motif 0.281920 0.214207 0.278077 0.225796 0.325566 0.151435 0.298797 0.224202 0.290253 0.145824 0.243443 0.320480 0.069286 0.404645 0.141614 0.384454 0.070044 0.621448 0.142647 0.165862 0.007295 0.907657 0.038110 0.046938 0.015587 0.018273 0.000658 0.965482 0.005527 0.005886 0.001905 0.986682 0.024512 0.001189 0.001344 0.972955 0.007384 0.025221 0.952270 0.015125 0.966438 0.000630 0.002693 0.030239 0.082252 0.001173 0.001495 0.915080 0.030255 0.677155 0.275323 0.017267 0.199467 0.118815 0.056814 0.624905 0.345445 0.169597 0.216831 0.268127 0.278106 0.150864 0.173693 0.397336 0.251834 0.339733 0.219703 0.188730 Consensus sequence: DDDYCCTTTGATCTDDV Reverse complement motif 0.251834 0.219703 0.339733 0.188730 0.397336 0.150864 0.173693 0.278106 0.268127 0.169597 0.216831 0.345445 0.624905 0.118815 0.056814 0.199467 0.030255 0.275323 0.677155 0.017267 0.915080 0.001173 0.001495 0.082252 0.030239 0.000630 0.002693 0.966438 0.007384 0.952270 0.025221 0.015125 0.972955 0.001189 0.001344 0.024512 0.986682 0.005886 0.001905 0.005527 0.965482 0.018273 0.000658 0.015587 0.007295 0.038110 0.907657 0.046938 0.070044 0.142647 0.621448 0.165862 0.069286 0.141614 0.404645 0.384454 0.320480 0.145824 0.243443 0.290253 0.224202 0.151435 0.298797 0.325566 0.225796 0.214207 0.278077 0.281920 Consensus sequence: VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD- ---GGGTCAWBGRGTTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 34 Motif name: RREB1 Original motif 0.272727 0.727273 0.000000 0.000000 0.090909 0.909091 0.000000 0.000000 0.272727 0.727273 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.636364 0.363636 0.000000 0.000000 0.818182 0.181818 0.000000 0.000000 0.727273 0.272727 0.000000 0.000000 0.363636 0.545455 0.000000 0.090909 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.363636 0.636364 0.000000 0.000000 0.090909 0.909091 0.000000 0.000000 0.272727 0.727273 0.000000 0.000000 0.363636 0.545455 0.090909 0.000000 0.181818 0.818182 0.000000 0.000000 0.363636 0.454545 0.000000 0.181818 0.363636 0.454545 0.090909 0.090909 0.363636 0.545455 0.000000 0.090909 0.090909 0.636364 0.272727 0.000000 0.363636 0.363636 0.181818 0.090909 Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reserve complement motif 0.090909 0.363636 0.181818 0.363636 0.090909 0.272727 0.636364 0.000000 0.363636 0.000000 0.545455 0.090909 0.363636 0.090909 0.454545 0.090909 0.363636 0.000000 0.454545 0.181818 0.181818 0.000000 0.818182 0.000000 0.363636 0.090909 0.545455 0.000000 0.272727 0.000000 0.727273 0.000000 0.090909 0.000000 0.909091 0.000000 0.363636 0.000000 0.636364 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.363636 0.000000 0.545455 0.090909 0.000000 0.272727 0.000000 0.727273 0.000000 0.181818 0.000000 0.818182 0.000000 0.363636 0.000000 0.636364 0.000000 0.000000 1.000000 0.000000 0.272727 0.000000 0.727273 0.000000 0.090909 0.000000 0.909091 0.000000 0.272727 0.000000 0.727273 0.000000 Consensus sequence: BGRRRGRGGRTGRTTYGGGG ************************************************************************ Best Matches for Motif ID 34 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primary Reverse Complement Reverse Complement Backward 4 20 0.044337 Species: Mus musculus Original motif 0.641428 0.180211 0.044767 0.133594 0.171696 0.262981 0.334148 0.231174 0.129726 0.322735 0.243462 0.304077 0.165713 0.175735 0.256108 0.402445 0.146090 0.171890 0.412753 0.269266 0.212837 0.439192 0.280990 0.066980 0.251088 0.275516 0.374380 0.099015 0.575438 0.079656 0.338201 0.006704 0.005634 0.003422 0.972597 0.018348 0.890447 0.077034 0.031851 0.000668 0.007128 0.986862 0.000496 0.005515 0.001445 0.991564 0.001925 0.005066 0.738761 0.190157 0.026399 0.044684 0.013384 0.983783 0.000896 0.001937 0.068077 0.929549 0.000773 0.001602 0.040830 0.933742 0.005283 0.020145 0.730274 0.029225 0.145689 0.094812 0.165032 0.572838 0.162001 0.100129 0.383584 0.129942 0.429497 0.056977 0.455959 0.071959 0.208204 0.263878 0.134271 0.262985 0.222626 0.380117 0.071193 0.346594 0.346081 0.236132 0.445661 0.405278 0.053901 0.095160 Consensus sequence: ABBBBVVRGACCACCCACRDBBM Reverse complement motif 0.095160 0.405278 0.053901 0.445661 0.071193 0.346081 0.346594 0.236132 0.380117 0.262985 0.222626 0.134271 0.263878 0.071959 0.208204 0.455959 0.383584 0.429497 0.129942 0.056977 0.165032 0.162001 0.572838 0.100129 0.094812 0.029225 0.145689 0.730274 0.040830 0.005283 0.933742 0.020145 0.068077 0.000773 0.929549 0.001602 0.013384 0.000896 0.983783 0.001937 0.044684 0.190157 0.026399 0.738761 0.001445 0.001925 0.991564 0.005066 0.007128 0.000496 0.986862 0.005515 0.000668 0.077034 0.031851 0.890447 0.005634 0.972597 0.003422 0.018348 0.006704 0.079656 0.338201 0.575438 0.251088 0.374380 0.275516 0.099015 0.212837 0.280990 0.439192 0.066980 0.146090 0.412753 0.171890 0.269266 0.402445 0.175735 0.256108 0.165713 0.129726 0.243462 0.322735 0.304077 0.171696 0.334148 0.262981 0.231174 0.133594 0.180211 0.044767 0.641428 Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT Alignment: YBVDMGTGGGTGGTCKVVBVBBT BGRRRGRGGRTGRTTYGGGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Original Motif Original Motif Backward 2 20 0.049057 Species: Mus musculus Original motif 0.404007 0.395873 0.173319 0.026801 0.305977 0.215534 0.215359 0.263130 0.370148 0.250957 0.113088 0.265808 0.324336 0.229498 0.174679 0.271487 0.263563 0.137896 0.079217 0.519324 0.265762 0.222582 0.082555 0.429102 0.206721 0.288405 0.017851 0.487023 0.164361 0.236500 0.061051 0.538088 0.593344 0.348446 0.050304 0.007906 0.031328 0.947050 0.007032 0.014590 0.010428 0.956605 0.029142 0.003825 0.459636 0.207616 0.155368 0.177380 0.014573 0.964608 0.012209 0.008610 0.066291 0.918196 0.008729 0.006784 0.019488 0.866774 0.018897 0.094841 0.767405 0.104198 0.029234 0.099164 0.052494 0.772531 0.039832 0.135142 0.296085 0.243498 0.350935 0.109482 0.518843 0.226659 0.124784 0.129714 0.647901 0.019721 0.159901 0.172477 0.113912 0.231511 0.214864 0.439713 0.223117 0.310596 0.293328 0.172959 0.185557 0.487662 0.136321 0.190459 Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Reverse complement motif 0.185557 0.136321 0.487662 0.190459 0.223117 0.293328 0.310596 0.172959 0.439713 0.231511 0.214864 0.113912 0.172477 0.019721 0.159901 0.647901 0.129714 0.226659 0.124784 0.518843 0.296085 0.350935 0.243498 0.109482 0.052494 0.039832 0.772531 0.135142 0.099164 0.104198 0.029234 0.767405 0.019488 0.018897 0.866774 0.094841 0.066291 0.008729 0.918196 0.006784 0.014573 0.012209 0.964608 0.008610 0.177380 0.207616 0.155368 0.459636 0.010428 0.029142 0.956605 0.003825 0.031328 0.007032 0.947050 0.014590 0.007906 0.348446 0.050304 0.593344 0.538088 0.236500 0.061051 0.164361 0.487023 0.288405 0.017851 0.206721 0.429102 0.222582 0.082555 0.265762 0.519324 0.137896 0.079217 0.263563 0.271487 0.229498 0.174679 0.324336 0.265808 0.250957 0.113088 0.370148 0.263130 0.215534 0.215359 0.305977 0.026801 0.395873 0.173319 0.404007 Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH --CCCCMAAMCAMCCMCMMMCV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primary Reverse Complement Reverse Complement Forward 2 20 0.054617 Species: Mus musculus Original motif 0.183797 0.268049 0.330111 0.218043 0.127599 0.330310 0.243614 0.298477 0.143199 0.188046 0.268593 0.400162 0.214690 0.205230 0.247090 0.332990 0.294688 0.299104 0.327152 0.079056 0.221909 0.193223 0.480155 0.104712 0.444072 0.068239 0.481838 0.005852 0.006182 0.015429 0.901278 0.077111 0.766535 0.111138 0.121632 0.000696 0.014848 0.973961 0.000298 0.010893 0.001807 0.992200 0.002669 0.003324 0.795344 0.140510 0.018576 0.045571 0.006990 0.988200 0.002510 0.002299 0.154898 0.842296 0.000998 0.001808 0.029577 0.919262 0.006935 0.044226 0.677987 0.032075 0.185065 0.104874 0.195132 0.364580 0.319321 0.120967 0.225412 0.115034 0.612849 0.046705 0.548628 0.058900 0.162857 0.229616 0.112531 0.340331 0.165910 0.381227 0.073029 0.303078 0.363896 0.259997 0.561485 0.260567 0.092979 0.084969 0.132283 0.457691 0.140159 0.269867 Consensus sequence: BBBDVVRGACCACCCAVGABBAB Reverse complement motif 0.132283 0.140159 0.457691 0.269867 0.084969 0.260567 0.092979 0.561485 0.073029 0.363896 0.303078 0.259997 0.381227 0.340331 0.165910 0.112531 0.229616 0.058900 0.162857 0.548628 0.225412 0.612849 0.115034 0.046705 0.195132 0.319321 0.364580 0.120967 0.104874 0.032075 0.185065 0.677987 0.029577 0.006935 0.919262 0.044226 0.154898 0.000998 0.842296 0.001808 0.006990 0.002510 0.988200 0.002299 0.045571 0.140510 0.018576 0.795344 0.001807 0.002669 0.992200 0.003324 0.014848 0.000298 0.973961 0.010893 0.000696 0.111138 0.121632 0.766535 0.006182 0.901278 0.015429 0.077111 0.444072 0.481838 0.068239 0.005852 0.221909 0.480155 0.193223 0.104712 0.294688 0.327152 0.299104 0.079056 0.332990 0.205230 0.247090 0.214690 0.400162 0.188046 0.268593 0.143199 0.127599 0.243614 0.330310 0.298477 0.183797 0.330111 0.268049 0.218043 Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB Alignment: BTBVTCVTGGGTGGTCMVVDVBB -BGRRRGRGGRTGRTTYGGGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Original Motif Original Motif Backward 3 20 0.055783 Species: Mus musculus Original motif 0.168550 0.345968 0.396524 0.088958 0.038113 0.360882 0.114042 0.486963 0.349356 0.180599 0.051416 0.418629 0.258773 0.332518 0.244932 0.163778 0.371663 0.208591 0.263136 0.156609 0.225440 0.321741 0.175932 0.276887 0.100827 0.656850 0.018644 0.223679 0.494140 0.155427 0.327424 0.023009 0.105642 0.805846 0.027712 0.060800 0.065110 0.845072 0.058046 0.031772 0.649343 0.110180 0.180680 0.059797 0.064269 0.853604 0.066860 0.015268 0.437421 0.533797 0.016833 0.011948 0.121694 0.787708 0.016177 0.074421 0.625382 0.066925 0.266070 0.041623 0.117819 0.608153 0.165139 0.108889 0.145639 0.102001 0.604926 0.147434 0.521188 0.184986 0.064607 0.229219 0.180371 0.274237 0.096591 0.448801 0.071055 0.455813 0.332817 0.140315 0.084503 0.199982 0.448293 0.267222 0.389451 0.169545 0.155507 0.285497 0.424314 0.227621 0.101210 0.246855 Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Reverse complement motif 0.246855 0.227621 0.101210 0.424314 0.285497 0.169545 0.155507 0.389451 0.084503 0.448293 0.199982 0.267222 0.071055 0.332817 0.455813 0.140315 0.448801 0.274237 0.096591 0.180371 0.229219 0.184986 0.064607 0.521188 0.145639 0.604926 0.102001 0.147434 0.117819 0.165139 0.608153 0.108889 0.041623 0.066925 0.266070 0.625382 0.121694 0.016177 0.787708 0.074421 0.437421 0.016833 0.533797 0.011948 0.064269 0.066860 0.853604 0.015268 0.059797 0.110180 0.180680 0.649343 0.065110 0.058046 0.845072 0.031772 0.105642 0.027712 0.805846 0.060800 0.023009 0.155427 0.327424 0.494140 0.100827 0.018644 0.656850 0.223679 0.225440 0.175932 0.321741 0.276887 0.156609 0.208591 0.263136 0.371663 0.258773 0.244932 0.332518 0.163778 0.418629 0.180599 0.051416 0.349356 0.486963 0.360882 0.114042 0.038113 0.168550 0.396524 0.345968 0.088958 Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH -CCCCMAAMCAMCCMCMMMCV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Reverse Complement Original Motif Forward 3 20 0.057969 Species: Mus musculus Original motif 0.319838 0.171199 0.138099 0.370865 0.269358 0.196600 0.346909 0.187133 0.176807 0.338888 0.193903 0.290402 0.230268 0.119645 0.310500 0.339587 0.517372 0.257658 0.111673 0.113296 0.159477 0.126524 0.561119 0.152879 0.117072 0.553013 0.130919 0.198996 0.073372 0.163548 0.525014 0.238066 0.143608 0.186896 0.170528 0.498967 0.054943 0.079034 0.722992 0.143031 0.048852 0.015134 0.852458 0.083556 0.029001 0.023938 0.918900 0.028160 0.036727 0.092645 0.090591 0.780037 0.017757 0.057598 0.895222 0.029423 0.026113 0.048113 0.879744 0.046030 0.023041 0.787043 0.123490 0.066426 0.579766 0.004868 0.296873 0.118493 0.303862 0.042931 0.290151 0.363055 0.099672 0.237431 0.262301 0.400597 0.217788 0.163908 0.367628 0.250676 0.450783 0.141108 0.226137 0.181972 0.485086 0.102553 0.242662 0.169700 0.109057 0.454222 0.145665 0.291056 Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Reverse complement motif 0.109057 0.145665 0.454222 0.291056 0.169700 0.102553 0.242662 0.485086 0.181972 0.141108 0.226137 0.450783 0.217788 0.367628 0.163908 0.250676 0.400597 0.237431 0.262301 0.099672 0.363055 0.042931 0.290151 0.303862 0.118493 0.004868 0.296873 0.579766 0.023041 0.123490 0.787043 0.066426 0.026113 0.879744 0.048113 0.046030 0.017757 0.895222 0.057598 0.029423 0.780037 0.092645 0.090591 0.036727 0.029001 0.918900 0.023938 0.028160 0.048852 0.852458 0.015134 0.083556 0.054943 0.722992 0.079034 0.143031 0.498967 0.186896 0.170528 0.143608 0.073372 0.525014 0.163548 0.238066 0.117072 0.130919 0.553013 0.198996 0.159477 0.561119 0.126524 0.152879 0.113296 0.257658 0.111673 0.517372 0.339587 0.119645 0.310500 0.230268 0.176807 0.193903 0.338888 0.290402 0.269358 0.346909 0.196600 0.187133 0.370865 0.171199 0.138099 0.319838 Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB --BGRRRGRGGRTGRTTYGGGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_primary Original Motif Original Motif Backward 2 20 0.059510 Species: Mus musculus Original motif 0.137831 0.118922 0.394177 0.349070 0.190108 0.163633 0.138507 0.507753 0.346002 0.332315 0.228621 0.093063 0.113254 0.287554 0.373285 0.225908 0.272578 0.125402 0.328963 0.273057 0.333973 0.115165 0.194267 0.356595 0.381054 0.086215 0.501679 0.031052 0.002232 0.007405 0.966087 0.024276 0.834741 0.112115 0.052053 0.001091 0.009034 0.983239 0.000766 0.006960 0.002054 0.988103 0.003138 0.006705 0.805772 0.171299 0.008415 0.014515 0.020076 0.976846 0.000894 0.002183 0.079914 0.917273 0.001179 0.001634 0.013983 0.950545 0.004205 0.031267 0.789407 0.039441 0.108645 0.062507 0.055453 0.161271 0.595249 0.188028 0.333424 0.128169 0.373270 0.165136 0.536103 0.109520 0.062980 0.291397 0.346477 0.090909 0.279533 0.283081 0.045892 0.190183 0.584314 0.179611 0.088294 0.406148 0.251647 0.253912 0.202467 0.447159 0.162802 0.187571 Consensus sequence: DTVBDDRGACCACCCAGDWDGBH Reverse complement motif 0.202467 0.162802 0.447159 0.187571 0.088294 0.251647 0.406148 0.253912 0.045892 0.584314 0.190183 0.179611 0.283081 0.090909 0.279533 0.346477 0.291397 0.109520 0.062980 0.536103 0.333424 0.373270 0.128169 0.165136 0.055453 0.595249 0.161271 0.188028 0.062507 0.039441 0.108645 0.789407 0.013983 0.004205 0.950545 0.031267 0.079914 0.001179 0.917273 0.001634 0.020076 0.000894 0.976846 0.002183 0.014515 0.171299 0.008415 0.805772 0.002054 0.003138 0.988103 0.006705 0.009034 0.000766 0.983239 0.006960 0.001091 0.112115 0.052053 0.834741 0.002232 0.966087 0.007405 0.024276 0.381054 0.501679 0.086215 0.031052 0.356595 0.115165 0.194267 0.333973 0.272578 0.328963 0.125402 0.273057 0.113254 0.373285 0.287554 0.225908 0.093063 0.332315 0.228621 0.346002 0.507753 0.163633 0.138507 0.190108 0.137831 0.394177 0.118922 0.349070 Consensus sequence: DBCDWHCTGGGTGGTCMDHBBAH Alignment: DTVBDDRGACCACCCAGDWDGBH --CCCCMAAMCAMCCMCMMMCV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Reverse Complement Original Motif Forward 2 20 0.062200 Species: Mus musculus Original motif 0.204923 0.208846 0.365383 0.220848 0.294304 0.300143 0.167287 0.238266 0.109711 0.619514 0.117379 0.153396 0.178979 0.378580 0.230177 0.212264 0.159594 0.542602 0.118178 0.179627 0.125206 0.430074 0.151826 0.292894 0.097692 0.709845 0.116956 0.075506 0.148292 0.565912 0.037632 0.248164 0.077951 0.034190 0.855503 0.032356 0.001657 0.001061 0.971877 0.025405 0.001926 0.001084 0.991712 0.005278 0.033031 0.012001 0.057796 0.897171 0.002723 0.002647 0.993348 0.001281 0.003261 0.000963 0.987199 0.008577 0.000611 0.090925 0.074857 0.833608 0.015299 0.978878 0.004949 0.000874 0.013368 0.600902 0.033485 0.352245 0.231949 0.149575 0.118804 0.499672 0.267580 0.186002 0.371242 0.175176 0.264884 0.223483 0.110082 0.401551 0.221365 0.170121 0.179559 0.428955 0.112997 0.692930 0.139981 0.054092 0.460305 0.207883 0.155111 0.176702 Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Reverse complement motif 0.176702 0.207883 0.155111 0.460305 0.112997 0.139981 0.692930 0.054092 0.428955 0.170121 0.179559 0.221365 0.401551 0.223483 0.110082 0.264884 0.267580 0.371242 0.186002 0.175176 0.499672 0.149575 0.118804 0.231949 0.013368 0.033485 0.600902 0.352245 0.015299 0.004949 0.978878 0.000874 0.833608 0.090925 0.074857 0.000611 0.003261 0.987199 0.000963 0.008577 0.002723 0.993348 0.002647 0.001281 0.897171 0.012001 0.057796 0.033031 0.001926 0.991712 0.001084 0.005278 0.001657 0.971877 0.001061 0.025405 0.077951 0.855503 0.034190 0.032356 0.148292 0.037632 0.565912 0.248164 0.097692 0.116956 0.709845 0.075506 0.125206 0.151826 0.430074 0.292894 0.159594 0.118178 0.542602 0.179627 0.178979 0.230177 0.378580 0.212264 0.109711 0.117379 0.619514 0.153396 0.294304 0.167287 0.300143 0.238266 0.204923 0.365383 0.208846 0.220848 Consensus sequence: HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH -BGRRRGRGGRTGRTTYGGGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondary Original Motif Original Motif Forward 2 20 0.062695 Species: Mus musculus Original motif 0.533199 0.080715 0.330435 0.055650 0.152031 0.212841 0.110234 0.524893 0.223934 0.264217 0.087037 0.424811 0.115097 0.339994 0.343861 0.201048 0.124993 0.418259 0.365642 0.091106 0.158365 0.292428 0.088361 0.460847 0.165479 0.561778 0.022254 0.250489 0.136873 0.259822 0.579763 0.023543 0.109570 0.747495 0.055128 0.087807 0.061912 0.792986 0.109031 0.036071 0.508703 0.267806 0.169766 0.053725 0.040912 0.838888 0.057470 0.062730 0.330554 0.606077 0.016192 0.047177 0.068079 0.563969 0.029742 0.338209 0.388799 0.291667 0.191284 0.128249 0.183283 0.578079 0.171100 0.067538 0.165163 0.097206 0.631377 0.106253 0.128564 0.435496 0.253275 0.182665 0.103395 0.088222 0.234758 0.573625 0.432879 0.276641 0.155895 0.134585 0.339199 0.148928 0.311036 0.200836 0.211958 0.298526 0.158443 0.331072 Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Reverse complement motif 0.331072 0.298526 0.158443 0.211958 0.200836 0.148928 0.311036 0.339199 0.134585 0.276641 0.155895 0.432879 0.573625 0.088222 0.234758 0.103395 0.128564 0.253275 0.435496 0.182665 0.165163 0.631377 0.097206 0.106253 0.183283 0.171100 0.578079 0.067538 0.128249 0.291667 0.191284 0.388799 0.068079 0.029742 0.563969 0.338209 0.330554 0.016192 0.606077 0.047177 0.040912 0.057470 0.838888 0.062730 0.053725 0.267806 0.169766 0.508703 0.061912 0.109031 0.792986 0.036071 0.109570 0.055128 0.747495 0.087807 0.136873 0.579763 0.259822 0.023543 0.165479 0.022254 0.561778 0.250489 0.460847 0.292428 0.088361 0.158365 0.124993 0.365642 0.418259 0.091106 0.115097 0.343861 0.339994 0.201048 0.424811 0.264217 0.087037 0.223934 0.524893 0.212841 0.110234 0.152031 0.055650 0.080715 0.330435 0.533199 Consensus sequence: HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH -CCCCMAAMCAMCCMCMMMCV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Original Motif Reverse Complement Backward 3 20 0.063190 Species: Mus musculus Original motif 0.331499 0.188505 0.182841 0.297156 0.328961 0.213025 0.273530 0.184484 0.197213 0.129292 0.524914 0.148581 0.274491 0.226406 0.312118 0.186986 0.103231 0.393726 0.364988 0.138055 0.552594 0.166422 0.186262 0.094722 0.157618 0.064773 0.616497 0.161112 0.139166 0.176098 0.621185 0.063551 0.748420 0.062398 0.012447 0.176735 0.116584 0.009438 0.860326 0.013653 0.005030 0.003646 0.974877 0.016447 0.055257 0.007181 0.921760 0.015802 0.032748 0.058249 0.052709 0.856293 0.105606 0.872231 0.014370 0.007793 0.019480 0.497379 0.125899 0.357242 0.478582 0.269713 0.061464 0.190242 0.253985 0.287006 0.201320 0.257689 0.319384 0.210231 0.175842 0.294543 0.222123 0.287802 0.201294 0.288782 0.139951 0.376041 0.081133 0.402875 0.213450 0.343835 0.383676 0.059039 0.322294 0.355918 0.148062 0.173725 Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Reverse complement motif 0.322294 0.148062 0.355918 0.173725 0.213450 0.383676 0.343835 0.059039 0.402875 0.376041 0.081133 0.139951 0.288782 0.287802 0.201294 0.222123 0.294543 0.210231 0.175842 0.319384 0.253985 0.201320 0.287006 0.257689 0.190242 0.269713 0.061464 0.478582 0.019480 0.125899 0.497379 0.357242 0.105606 0.014370 0.872231 0.007793 0.856293 0.058249 0.052709 0.032748 0.055257 0.921760 0.007181 0.015802 0.005030 0.974877 0.003646 0.016447 0.116584 0.860326 0.009438 0.013653 0.176735 0.062398 0.012447 0.748420 0.139166 0.621185 0.176098 0.063551 0.157618 0.616497 0.064773 0.161112 0.094722 0.166422 0.186262 0.552594 0.103231 0.364988 0.393726 0.138055 0.274491 0.312118 0.226406 0.186986 0.197213 0.524914 0.129292 0.148581 0.184484 0.213025 0.273530 0.328961 0.297156 0.188505 0.182841 0.331499 Consensus sequence: DVMHHDHKGACCCTCCTSVCBH Alignment: DVMHHDHKGACCCTCCTSVCBH CCCCMAAMCAMCCMCMMMCV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Reverse Complement Reverse Complement Backward 1 20 0.067385 Species: Mus musculus Original motif 0.399785 0.446658 0.111435 0.042122 0.535175 0.103991 0.089706 0.271128 0.078171 0.387987 0.375083 0.158759 0.309001 0.519142 0.070618 0.101239 0.201844 0.255818 0.323149 0.219190 0.534101 0.109845 0.235026 0.121028 0.656038 0.037473 0.261484 0.045006 0.315713 0.164290 0.471815 0.048182 0.651960 0.009412 0.328237 0.010391 0.937365 0.017313 0.007516 0.037807 0.019983 0.044238 0.012387 0.923392 0.061195 0.021485 0.881645 0.035675 0.017521 0.952998 0.013139 0.016342 0.254160 0.029735 0.493023 0.223082 0.239200 0.593324 0.114503 0.052973 0.610822 0.071539 0.099169 0.218470 0.166610 0.389712 0.204400 0.239278 0.227752 0.361626 0.178497 0.232125 0.537030 0.182466 0.026035 0.254470 0.235902 0.151006 0.043788 0.569304 0.081851 0.250397 0.590059 0.077693 0.340417 0.189613 0.272075 0.197895 Consensus sequence: MWSMBAARRATGCDCABHATGD Reverse complement motif 0.197895 0.189613 0.272075 0.340417 0.081851 0.590059 0.250397 0.077693 0.569304 0.151006 0.043788 0.235902 0.254470 0.182466 0.026035 0.537030 0.227752 0.178497 0.361626 0.232125 0.166610 0.204400 0.389712 0.239278 0.218470 0.071539 0.099169 0.610822 0.239200 0.114503 0.593324 0.052973 0.254160 0.493023 0.029735 0.223082 0.017521 0.013139 0.952998 0.016342 0.061195 0.881645 0.021485 0.035675 0.923392 0.044238 0.012387 0.019983 0.037807 0.017313 0.007516 0.937365 0.010391 0.009412 0.328237 0.651960 0.315713 0.471815 0.164290 0.048182 0.045006 0.037473 0.261484 0.656038 0.121028 0.109845 0.235026 0.534101 0.201844 0.323149 0.255818 0.219190 0.309001 0.070618 0.519142 0.101239 0.078171 0.375083 0.387987 0.158759 0.271128 0.103991 0.089706 0.535175 0.399785 0.111435 0.446658 0.042122 Consensus sequence: DCATDBTGHGCATKMTTBRSWR Alignment: DCATDBTGHGCATKMTTBRSWR --BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 35 Motif name: REST Original motif 0.132621 0.109365 0.230044 0.527970 0.036318 0.168441 0.091421 0.703820 0.047589 0.855354 0.031309 0.065748 0.906367 0.018727 0.058677 0.016230 0.021197 0.027431 0.945137 0.006234 0.076012 0.609346 0.201246 0.113396 0.980697 0.004359 0.007472 0.007472 0.001868 0.987547 0.007472 0.003113 0.021793 0.922167 0.012453 0.043587 0.568847 0.125234 0.100935 0.204984 0.136534 0.233791 0.077307 0.552369 0.024314 0.004364 0.966958 0.004364 0.012469 0.003117 0.983167 0.001247 0.877105 0.069869 0.021210 0.031815 0.008125 0.800000 0.145625 0.046250 0.983750 0.005625 0.004375 0.006250 0.026349 0.008156 0.959849 0.005646 0.128688 0.632141 0.114878 0.124294 0.229899 0.019472 0.432161 0.318467 0.133962 0.586792 0.200629 0.078616 0.112579 0.700629 0.023270 0.163522 Consensus sequence: TTCAGCACCATGGACAGCKCC Reserve complement motif 0.112579 0.023270 0.700629 0.163522 0.133962 0.200629 0.586792 0.078616 0.229899 0.432161 0.019472 0.318467 0.128688 0.114878 0.632141 0.124294 0.026349 0.959849 0.008156 0.005646 0.006250 0.005625 0.004375 0.983750 0.008125 0.145625 0.800000 0.046250 0.031815 0.069869 0.021210 0.877105 0.012469 0.983167 0.003117 0.001247 0.024314 0.966958 0.004364 0.004364 0.552369 0.233791 0.077307 0.136534 0.204984 0.125234 0.100935 0.568847 0.021793 0.012453 0.922167 0.043587 0.001868 0.007472 0.987547 0.003113 0.007472 0.004359 0.007472 0.980697 0.076012 0.201246 0.609346 0.113396 0.021197 0.945137 0.027431 0.006234 0.016230 0.018727 0.058677 0.906367 0.047589 0.031309 0.855354 0.065748 0.703820 0.168441 0.091421 0.036318 0.527970 0.109365 0.230044 0.132621 Consensus sequence: GGYGCTGTCCATGGTGCTGAA ************************************************************************ Best Matches for Motif ID 35 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primary Original Motif Original Motif Forward 3 21 0.069918 Species: Mus musculus Original motif 0.183797 0.268049 0.330111 0.218043 0.127599 0.330310 0.243614 0.298477 0.143199 0.188046 0.268593 0.400162 0.214690 0.205230 0.247090 0.332990 0.294688 0.299104 0.327152 0.079056 0.221909 0.193223 0.480155 0.104712 0.444072 0.068239 0.481838 0.005852 0.006182 0.015429 0.901278 0.077111 0.766535 0.111138 0.121632 0.000696 0.014848 0.973961 0.000298 0.010893 0.001807 0.992200 0.002669 0.003324 0.795344 0.140510 0.018576 0.045571 0.006990 0.988200 0.002510 0.002299 0.154898 0.842296 0.000998 0.001808 0.029577 0.919262 0.006935 0.044226 0.677987 0.032075 0.185065 0.104874 0.195132 0.364580 0.319321 0.120967 0.225412 0.115034 0.612849 0.046705 0.548628 0.058900 0.162857 0.229616 0.112531 0.340331 0.165910 0.381227 0.073029 0.303078 0.363896 0.259997 0.561485 0.260567 0.092979 0.084969 0.132283 0.457691 0.140159 0.269867 Consensus sequence: BBBDVVRGACCACCCAVGABBAB Reverse complement motif 0.132283 0.140159 0.457691 0.269867 0.084969 0.260567 0.092979 0.561485 0.073029 0.363896 0.303078 0.259997 0.381227 0.340331 0.165910 0.112531 0.229616 0.058900 0.162857 0.548628 0.225412 0.612849 0.115034 0.046705 0.195132 0.319321 0.364580 0.120967 0.104874 0.032075 0.185065 0.677987 0.029577 0.006935 0.919262 0.044226 0.154898 0.000998 0.842296 0.001808 0.006990 0.002510 0.988200 0.002299 0.045571 0.140510 0.018576 0.795344 0.001807 0.002669 0.992200 0.003324 0.014848 0.000298 0.973961 0.010893 0.000696 0.111138 0.121632 0.766535 0.006182 0.901278 0.015429 0.077111 0.444072 0.481838 0.068239 0.005852 0.221909 0.480155 0.193223 0.104712 0.294688 0.327152 0.299104 0.079056 0.332990 0.205230 0.247090 0.214690 0.400162 0.188046 0.268593 0.143199 0.127599 0.243614 0.330310 0.298477 0.183797 0.330111 0.268049 0.218043 Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB Alignment: BBBDVVRGACCACCCAVGABBAB --TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Reverse Complement Reverse Complement Forward 1 21 0.073468 Species: Mus musculus Original motif 0.214165 0.143436 0.372522 0.269876 0.314445 0.406003 0.160351 0.119201 0.137147 0.092924 0.042921 0.727007 0.044121 0.072843 0.051741 0.831295 0.261292 0.324124 0.298498 0.116086 0.258125 0.323243 0.263362 0.155271 0.204557 0.589399 0.107153 0.098891 0.371021 0.244027 0.291102 0.093849 0.096327 0.572718 0.011797 0.319159 0.027282 0.046183 0.844519 0.082016 0.018921 0.012887 0.915917 0.052275 0.364793 0.166722 0.084229 0.384256 0.028216 0.011233 0.951056 0.009495 0.054974 0.004738 0.890377 0.049911 0.006802 0.312915 0.134247 0.546036 0.241289 0.628210 0.104788 0.025713 0.237863 0.302807 0.213018 0.246311 0.349399 0.203220 0.086635 0.360746 0.386634 0.144693 0.246895 0.221779 0.425101 0.354676 0.093374 0.126849 0.060272 0.391320 0.104905 0.443503 0.162090 0.190233 0.227433 0.420244 Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Reverse complement motif 0.420244 0.190233 0.227433 0.162090 0.443503 0.391320 0.104905 0.060272 0.126849 0.354676 0.093374 0.425101 0.221779 0.144693 0.246895 0.386634 0.360746 0.203220 0.086635 0.349399 0.237863 0.213018 0.302807 0.246311 0.241289 0.104788 0.628210 0.025713 0.546036 0.312915 0.134247 0.006802 0.054974 0.890377 0.004738 0.049911 0.028216 0.951056 0.011233 0.009495 0.384256 0.166722 0.084229 0.364793 0.018921 0.915917 0.012887 0.052275 0.027282 0.844519 0.046183 0.082016 0.096327 0.011797 0.572718 0.319159 0.093849 0.244027 0.291102 0.371021 0.204557 0.107153 0.589399 0.098891 0.258125 0.263362 0.323243 0.155271 0.261292 0.298498 0.324124 0.116086 0.831295 0.072843 0.051741 0.044121 0.727007 0.092924 0.042921 0.137147 0.314445 0.160351 0.406003 0.119201 0.214165 0.372522 0.143436 0.269876 Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH Alignment: VMYDHDGMCCHCCKBGVVAAVH GGYGCTGTCCATGGTGCTGAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Original Motif Original Motif Forward 2 21 0.074065 Species: Mus musculus Original motif 0.168550 0.345968 0.396524 0.088958 0.038113 0.360882 0.114042 0.486963 0.349356 0.180599 0.051416 0.418629 0.258773 0.332518 0.244932 0.163778 0.371663 0.208591 0.263136 0.156609 0.225440 0.321741 0.175932 0.276887 0.100827 0.656850 0.018644 0.223679 0.494140 0.155427 0.327424 0.023009 0.105642 0.805846 0.027712 0.060800 0.065110 0.845072 0.058046 0.031772 0.649343 0.110180 0.180680 0.059797 0.064269 0.853604 0.066860 0.015268 0.437421 0.533797 0.016833 0.011948 0.121694 0.787708 0.016177 0.074421 0.625382 0.066925 0.266070 0.041623 0.117819 0.608153 0.165139 0.108889 0.145639 0.102001 0.604926 0.147434 0.521188 0.184986 0.064607 0.229219 0.180371 0.274237 0.096591 0.448801 0.071055 0.455813 0.332817 0.140315 0.084503 0.199982 0.448293 0.267222 0.389451 0.169545 0.155507 0.285497 0.424314 0.227621 0.101210 0.246855 Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Reverse complement motif 0.246855 0.227621 0.101210 0.424314 0.285497 0.169545 0.155507 0.389451 0.084503 0.448293 0.199982 0.267222 0.071055 0.332817 0.455813 0.140315 0.448801 0.274237 0.096591 0.180371 0.229219 0.184986 0.064607 0.521188 0.145639 0.604926 0.102001 0.147434 0.117819 0.165139 0.608153 0.108889 0.041623 0.066925 0.266070 0.625382 0.121694 0.016177 0.787708 0.074421 0.437421 0.016833 0.533797 0.011948 0.064269 0.066860 0.853604 0.015268 0.059797 0.110180 0.180680 0.649343 0.065110 0.058046 0.845072 0.031772 0.105642 0.027712 0.805846 0.060800 0.023009 0.155427 0.327424 0.494140 0.100827 0.018644 0.656850 0.223679 0.225440 0.175932 0.321741 0.276887 0.156609 0.208591 0.263136 0.371663 0.258773 0.244932 0.332518 0.163778 0.418629 0.180599 0.051416 0.349356 0.486963 0.360882 0.114042 0.038113 0.168550 0.396524 0.345968 0.088958 Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH -TTCAGCACCATGGACAGCKCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Original Motif Original Motif Backward 1 21 0.075015 Species: Mus musculus Original motif 0.404007 0.395873 0.173319 0.026801 0.305977 0.215534 0.215359 0.263130 0.370148 0.250957 0.113088 0.265808 0.324336 0.229498 0.174679 0.271487 0.263563 0.137896 0.079217 0.519324 0.265762 0.222582 0.082555 0.429102 0.206721 0.288405 0.017851 0.487023 0.164361 0.236500 0.061051 0.538088 0.593344 0.348446 0.050304 0.007906 0.031328 0.947050 0.007032 0.014590 0.010428 0.956605 0.029142 0.003825 0.459636 0.207616 0.155368 0.177380 0.014573 0.964608 0.012209 0.008610 0.066291 0.918196 0.008729 0.006784 0.019488 0.866774 0.018897 0.094841 0.767405 0.104198 0.029234 0.099164 0.052494 0.772531 0.039832 0.135142 0.296085 0.243498 0.350935 0.109482 0.518843 0.226659 0.124784 0.129714 0.647901 0.019721 0.159901 0.172477 0.113912 0.231511 0.214864 0.439713 0.223117 0.310596 0.293328 0.172959 0.185557 0.487662 0.136321 0.190459 Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Reverse complement motif 0.185557 0.136321 0.487662 0.190459 0.223117 0.293328 0.310596 0.172959 0.439713 0.231511 0.214864 0.113912 0.172477 0.019721 0.159901 0.647901 0.129714 0.226659 0.124784 0.518843 0.296085 0.350935 0.243498 0.109482 0.052494 0.039832 0.772531 0.135142 0.099164 0.104198 0.029234 0.767405 0.019488 0.018897 0.866774 0.094841 0.066291 0.008729 0.918196 0.006784 0.014573 0.012209 0.964608 0.008610 0.177380 0.207616 0.155368 0.459636 0.010428 0.029142 0.956605 0.003825 0.031328 0.007032 0.947050 0.014590 0.007906 0.348446 0.050304 0.593344 0.538088 0.236500 0.061051 0.164361 0.487023 0.288405 0.017851 0.206721 0.429102 0.222582 0.082555 0.265762 0.519324 0.137896 0.079217 0.263563 0.271487 0.229498 0.174679 0.324336 0.265808 0.250957 0.113088 0.370148 0.263130 0.215534 0.215359 0.305977 0.026801 0.395873 0.173319 0.404007 Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH --TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Reverse Complement Original Motif Backward 3 21 0.075145 Species: Mus musculus Original motif 0.204923 0.208846 0.365383 0.220848 0.294304 0.300143 0.167287 0.238266 0.109711 0.619514 0.117379 0.153396 0.178979 0.378580 0.230177 0.212264 0.159594 0.542602 0.118178 0.179627 0.125206 0.430074 0.151826 0.292894 0.097692 0.709845 0.116956 0.075506 0.148292 0.565912 0.037632 0.248164 0.077951 0.034190 0.855503 0.032356 0.001657 0.001061 0.971877 0.025405 0.001926 0.001084 0.991712 0.005278 0.033031 0.012001 0.057796 0.897171 0.002723 0.002647 0.993348 0.001281 0.003261 0.000963 0.987199 0.008577 0.000611 0.090925 0.074857 0.833608 0.015299 0.978878 0.004949 0.000874 0.013368 0.600902 0.033485 0.352245 0.231949 0.149575 0.118804 0.499672 0.267580 0.186002 0.371242 0.175176 0.264884 0.223483 0.110082 0.401551 0.221365 0.170121 0.179559 0.428955 0.112997 0.692930 0.139981 0.054092 0.460305 0.207883 0.155111 0.176702 Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Reverse complement motif 0.176702 0.207883 0.155111 0.460305 0.112997 0.139981 0.692930 0.054092 0.428955 0.170121 0.179559 0.221365 0.401551 0.223483 0.110082 0.264884 0.267580 0.371242 0.186002 0.175176 0.499672 0.149575 0.118804 0.231949 0.013368 0.033485 0.600902 0.352245 0.015299 0.004949 0.978878 0.000874 0.833608 0.090925 0.074857 0.000611 0.003261 0.987199 0.000963 0.008577 0.002723 0.993348 0.002647 0.001281 0.897171 0.012001 0.057796 0.033031 0.001926 0.991712 0.001084 0.005278 0.001657 0.971877 0.001061 0.025405 0.077951 0.855503 0.034190 0.032356 0.148292 0.037632 0.565912 0.248164 0.097692 0.116956 0.709845 0.075506 0.125206 0.151826 0.430074 0.292894 0.159594 0.118178 0.542602 0.179627 0.178979 0.230177 0.378580 0.212264 0.109711 0.117379 0.619514 0.153396 0.294304 0.167287 0.300143 0.238266 0.204923 0.365383 0.208846 0.220848 Consensus sequence: HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH GGYGCTGTCCATGGTGCTGAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Original Motif Reverse Complement Backward 2 21 0.075832 Species: Mus musculus Original motif 0.319838 0.171199 0.138099 0.370865 0.269358 0.196600 0.346909 0.187133 0.176807 0.338888 0.193903 0.290402 0.230268 0.119645 0.310500 0.339587 0.517372 0.257658 0.111673 0.113296 0.159477 0.126524 0.561119 0.152879 0.117072 0.553013 0.130919 0.198996 0.073372 0.163548 0.525014 0.238066 0.143608 0.186896 0.170528 0.498967 0.054943 0.079034 0.722992 0.143031 0.048852 0.015134 0.852458 0.083556 0.029001 0.023938 0.918900 0.028160 0.036727 0.092645 0.090591 0.780037 0.017757 0.057598 0.895222 0.029423 0.026113 0.048113 0.879744 0.046030 0.023041 0.787043 0.123490 0.066426 0.579766 0.004868 0.296873 0.118493 0.303862 0.042931 0.290151 0.363055 0.099672 0.237431 0.262301 0.400597 0.217788 0.163908 0.367628 0.250676 0.450783 0.141108 0.226137 0.181972 0.485086 0.102553 0.242662 0.169700 0.109057 0.454222 0.145665 0.291056 Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Reverse complement motif 0.109057 0.145665 0.454222 0.291056 0.169700 0.102553 0.242662 0.485086 0.181972 0.141108 0.226137 0.450783 0.217788 0.367628 0.163908 0.250676 0.400597 0.237431 0.262301 0.099672 0.363055 0.042931 0.290151 0.303862 0.118493 0.004868 0.296873 0.579766 0.023041 0.123490 0.787043 0.066426 0.026113 0.879744 0.048113 0.046030 0.017757 0.895222 0.057598 0.029423 0.780037 0.092645 0.090591 0.036727 0.029001 0.918900 0.023938 0.028160 0.048852 0.852458 0.015134 0.083556 0.054943 0.722992 0.079034 0.143031 0.498967 0.186896 0.170528 0.143608 0.073372 0.525014 0.163548 0.238066 0.117072 0.130919 0.553013 0.198996 0.159477 0.561119 0.126524 0.152879 0.113296 0.257658 0.111673 0.517372 0.339587 0.119645 0.310500 0.230268 0.176807 0.193903 0.338888 0.290402 0.269358 0.346909 0.196600 0.187133 0.370865 0.171199 0.138099 0.319838 Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH -TTCAGCACCATGGACAGCKCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_primary Original Motif Original Motif Backward 1 21 0.077345 Species: Mus musculus Original motif 0.137831 0.118922 0.394177 0.349070 0.190108 0.163633 0.138507 0.507753 0.346002 0.332315 0.228621 0.093063 0.113254 0.287554 0.373285 0.225908 0.272578 0.125402 0.328963 0.273057 0.333973 0.115165 0.194267 0.356595 0.381054 0.086215 0.501679 0.031052 0.002232 0.007405 0.966087 0.024276 0.834741 0.112115 0.052053 0.001091 0.009034 0.983239 0.000766 0.006960 0.002054 0.988103 0.003138 0.006705 0.805772 0.171299 0.008415 0.014515 0.020076 0.976846 0.000894 0.002183 0.079914 0.917273 0.001179 0.001634 0.013983 0.950545 0.004205 0.031267 0.789407 0.039441 0.108645 0.062507 0.055453 0.161271 0.595249 0.188028 0.333424 0.128169 0.373270 0.165136 0.536103 0.109520 0.062980 0.291397 0.346477 0.090909 0.279533 0.283081 0.045892 0.190183 0.584314 0.179611 0.088294 0.406148 0.251647 0.253912 0.202467 0.447159 0.162802 0.187571 Consensus sequence: DTVBDDRGACCACCCAGDWDGBH Reverse complement motif 0.202467 0.162802 0.447159 0.187571 0.088294 0.251647 0.406148 0.253912 0.045892 0.584314 0.190183 0.179611 0.283081 0.090909 0.279533 0.346477 0.291397 0.109520 0.062980 0.536103 0.333424 0.373270 0.128169 0.165136 0.055453 0.595249 0.161271 0.188028 0.062507 0.039441 0.108645 0.789407 0.013983 0.004205 0.950545 0.031267 0.079914 0.001179 0.917273 0.001634 0.020076 0.000894 0.976846 0.002183 0.014515 0.171299 0.008415 0.805772 0.002054 0.003138 0.988103 0.006705 0.009034 0.000766 0.983239 0.006960 0.001091 0.112115 0.052053 0.834741 0.002232 0.966087 0.007405 0.024276 0.381054 0.501679 0.086215 0.031052 0.356595 0.115165 0.194267 0.333973 0.272578 0.328963 0.125402 0.273057 0.113254 0.373285 0.287554 0.225908 0.093063 0.332315 0.228621 0.346002 0.507753 0.163633 0.138507 0.190108 0.137831 0.394177 0.118922 0.349070 Consensus sequence: DBCDWHCTGGGTGGTCMDHBBAH Alignment: DTVBDDRGACCACCCAGDWDGBH --TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Original Motif Original Motif Forward 3 21 0.077537 Species: Mus musculus Original motif 0.120938 0.344851 0.124072 0.410138 0.220931 0.169844 0.422396 0.186829 0.127752 0.260812 0.103811 0.507625 0.140641 0.405473 0.287668 0.166218 0.296957 0.155579 0.301094 0.246370 0.219647 0.287193 0.154072 0.339087 0.049294 0.026059 0.121789 0.802859 0.520042 0.289284 0.173423 0.017251 0.049190 0.943472 0.004308 0.003030 0.902609 0.006767 0.074770 0.015854 0.003221 0.971329 0.005512 0.019937 0.019937 0.005512 0.971329 0.003221 0.015854 0.074770 0.006767 0.902609 0.003030 0.004308 0.943472 0.049190 0.003497 0.088920 0.685942 0.221641 0.802859 0.121789 0.026059 0.049294 0.334544 0.155170 0.275193 0.235092 0.275957 0.132104 0.454982 0.136957 0.134097 0.254352 0.422940 0.188611 0.396163 0.432784 0.051281 0.119772 0.276474 0.115627 0.419844 0.188056 0.160759 0.088061 0.649863 0.101318 0.203314 0.166595 0.106821 0.523270 Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Reverse complement motif 0.523270 0.166595 0.106821 0.203314 0.160759 0.649863 0.088061 0.101318 0.276474 0.419844 0.115627 0.188056 0.396163 0.051281 0.432784 0.119772 0.134097 0.422940 0.254352 0.188611 0.275957 0.454982 0.132104 0.136957 0.235092 0.155170 0.275193 0.334544 0.049294 0.121789 0.026059 0.802859 0.003497 0.685942 0.088920 0.221641 0.003030 0.943472 0.004308 0.049190 0.902609 0.074770 0.006767 0.015854 0.019937 0.971329 0.005512 0.003221 0.003221 0.005512 0.971329 0.019937 0.015854 0.006767 0.074770 0.902609 0.049190 0.004308 0.943472 0.003030 0.017251 0.289284 0.173423 0.520042 0.802859 0.026059 0.121789 0.049294 0.339087 0.287193 0.154072 0.219647 0.296957 0.301094 0.155579 0.246370 0.140641 0.287668 0.405473 0.166218 0.507625 0.260812 0.103811 0.127752 0.220931 0.422396 0.169844 0.186829 0.410138 0.344851 0.124072 0.120938 Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM Alignment: YDYBDHTMCACGTGGADDBMDGT --TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Reverse Complement Reverse Complement Backward 1 21 0.077977 Species: Mus musculus Original motif 0.399785 0.446658 0.111435 0.042122 0.535175 0.103991 0.089706 0.271128 0.078171 0.387987 0.375083 0.158759 0.309001 0.519142 0.070618 0.101239 0.201844 0.255818 0.323149 0.219190 0.534101 0.109845 0.235026 0.121028 0.656038 0.037473 0.261484 0.045006 0.315713 0.164290 0.471815 0.048182 0.651960 0.009412 0.328237 0.010391 0.937365 0.017313 0.007516 0.037807 0.019983 0.044238 0.012387 0.923392 0.061195 0.021485 0.881645 0.035675 0.017521 0.952998 0.013139 0.016342 0.254160 0.029735 0.493023 0.223082 0.239200 0.593324 0.114503 0.052973 0.610822 0.071539 0.099169 0.218470 0.166610 0.389712 0.204400 0.239278 0.227752 0.361626 0.178497 0.232125 0.537030 0.182466 0.026035 0.254470 0.235902 0.151006 0.043788 0.569304 0.081851 0.250397 0.590059 0.077693 0.340417 0.189613 0.272075 0.197895 Consensus sequence: MWSMBAARRATGCDCABHATGD Reverse complement motif 0.197895 0.189613 0.272075 0.340417 0.081851 0.590059 0.250397 0.077693 0.569304 0.151006 0.043788 0.235902 0.254470 0.182466 0.026035 0.537030 0.227752 0.178497 0.361626 0.232125 0.166610 0.204400 0.389712 0.239278 0.218470 0.071539 0.099169 0.610822 0.239200 0.114503 0.593324 0.052973 0.254160 0.493023 0.029735 0.223082 0.017521 0.013139 0.952998 0.016342 0.061195 0.881645 0.021485 0.035675 0.923392 0.044238 0.012387 0.019983 0.037807 0.017313 0.007516 0.937365 0.010391 0.009412 0.328237 0.651960 0.315713 0.471815 0.164290 0.048182 0.045006 0.037473 0.261484 0.656038 0.121028 0.109845 0.235026 0.534101 0.201844 0.323149 0.255818 0.219190 0.309001 0.070618 0.519142 0.101239 0.078171 0.375083 0.387987 0.158759 0.271128 0.103991 0.089706 0.535175 0.399785 0.111435 0.446658 0.042122 Consensus sequence: DCATDBTGHGCATKMTTBRSWR Alignment: DCATDBTGHGCATKMTTBRSWR -GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Original Motif Backward 1 21 0.078597 Species: Mus musculus Original motif 0.104824 0.412716 0.254506 0.227955 0.644922 0.065476 0.140479 0.149122 0.201205 0.166164 0.347131 0.285501 0.360606 0.256316 0.150766 0.232313 0.199831 0.240681 0.279350 0.280137 0.234308 0.204076 0.321306 0.240310 0.274112 0.462435 0.111425 0.152028 0.067070 0.717501 0.073934 0.141496 0.106745 0.084442 0.658566 0.150247 0.025128 0.967053 0.003585 0.004234 0.006412 0.982989 0.003227 0.007371 0.009588 0.877620 0.002571 0.110221 0.621521 0.355443 0.015669 0.007366 0.002600 0.980275 0.004191 0.012934 0.118773 0.026658 0.783843 0.070725 0.022358 0.822101 0.024684 0.130857 0.713212 0.080912 0.128793 0.077084 0.166568 0.250955 0.107934 0.474544 0.225040 0.222494 0.163301 0.389166 0.268976 0.223206 0.265314 0.242504 0.137052 0.229058 0.148439 0.485451 0.135819 0.304550 0.141994 0.417637 0.272440 0.319501 0.230580 0.177478 Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Reverse complement motif 0.272440 0.230580 0.319501 0.177478 0.417637 0.304550 0.141994 0.135819 0.485451 0.229058 0.148439 0.137052 0.242504 0.223206 0.265314 0.268976 0.389166 0.222494 0.163301 0.225040 0.474544 0.250955 0.107934 0.166568 0.077084 0.080912 0.128793 0.713212 0.022358 0.024684 0.822101 0.130857 0.118773 0.783843 0.026658 0.070725 0.002600 0.004191 0.980275 0.012934 0.007366 0.355443 0.015669 0.621521 0.009588 0.002571 0.877620 0.110221 0.006412 0.003227 0.982989 0.007371 0.025128 0.003585 0.967053 0.004234 0.106745 0.658566 0.084442 0.150247 0.067070 0.073934 0.717501 0.141496 0.274112 0.111425 0.462435 0.152028 0.234308 0.321306 0.204076 0.240310 0.280137 0.240681 0.279350 0.199831 0.232313 0.256316 0.150766 0.360606 0.201205 0.347131 0.166164 0.285501 0.149122 0.065476 0.140479 0.644922 0.104824 0.254506 0.412716 0.227955 Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB Alignment: BADHBDHCGCCCMCGCAHHDBBV --GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 36 Motif name: PPARGRXRA Original motif 0.109685 0.369895 0.373396 0.147025 0.117716 0.193473 0.148019 0.540793 0.453488 0.026744 0.427907 0.091860 0.116144 0.003484 0.779326 0.101045 0.161253 0.017401 0.781903 0.039443 0.168213 0.149652 0.458237 0.223898 0.082271 0.633835 0.207416 0.076477 0.949015 0.024334 0.017381 0.009270 0.604867 0.055620 0.312862 0.026651 0.825231 0.005787 0.158565 0.010417 0.095017 0.002317 0.888760 0.013905 0.047509 0.010429 0.803013 0.139050 0.025492 0.114716 0.304751 0.555041 0.062645 0.643852 0.167053 0.126450 0.784223 0.067285 0.054524 0.093968 Consensus sequence: BTRGGDCARAGGKCA Reserve complement motif 0.093968 0.067285 0.054524 0.784223 0.062645 0.167053 0.643852 0.126450 0.555041 0.114716 0.304751 0.025492 0.047509 0.803013 0.010429 0.139050 0.095017 0.888760 0.002317 0.013905 0.010417 0.005787 0.158565 0.825231 0.026651 0.055620 0.312862 0.604867 0.009270 0.024334 0.017381 0.949015 0.082271 0.207416 0.633835 0.076477 0.168213 0.458237 0.149652 0.223898 0.161253 0.781903 0.017401 0.039443 0.116144 0.779326 0.003484 0.101045 0.091860 0.026744 0.427907 0.453488 0.540793 0.193473 0.148019 0.117716 0.109685 0.373396 0.369895 0.147025 Consensus sequence: TGRCCTKTGHCCKAB ************************************************************************ Best Matches for Motif ID 36 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Original Motif Reverse Complement Backward 2 15 0.030495 Species: Mus musculus Original motif 0.281920 0.214207 0.278077 0.225796 0.325566 0.151435 0.298797 0.224202 0.290253 0.145824 0.243443 0.320480 0.069286 0.404645 0.141614 0.384454 0.070044 0.621448 0.142647 0.165862 0.007295 0.907657 0.038110 0.046938 0.015587 0.018273 0.000658 0.965482 0.005527 0.005886 0.001905 0.986682 0.024512 0.001189 0.001344 0.972955 0.007384 0.025221 0.952270 0.015125 0.966438 0.000630 0.002693 0.030239 0.082252 0.001173 0.001495 0.915080 0.030255 0.677155 0.275323 0.017267 0.199467 0.118815 0.056814 0.624905 0.345445 0.169597 0.216831 0.268127 0.278106 0.150864 0.173693 0.397336 0.251834 0.339733 0.219703 0.188730 Consensus sequence: DDDYCCTTTGATCTDDV Reverse complement motif 0.251834 0.219703 0.339733 0.188730 0.397336 0.150864 0.173693 0.278106 0.268127 0.169597 0.216831 0.345445 0.624905 0.118815 0.056814 0.199467 0.030255 0.275323 0.677155 0.017267 0.915080 0.001173 0.001495 0.082252 0.030239 0.000630 0.002693 0.966438 0.007384 0.952270 0.025221 0.015125 0.972955 0.001189 0.001344 0.024512 0.986682 0.005886 0.001905 0.005527 0.965482 0.018273 0.000658 0.015587 0.007295 0.038110 0.907657 0.046938 0.070044 0.142647 0.621448 0.165862 0.069286 0.141614 0.404645 0.384454 0.320480 0.145824 0.243443 0.290253 0.224202 0.151435 0.298797 0.325566 0.225796 0.214207 0.278077 0.281920 Consensus sequence: VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD -BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00058 Tcf3_primary Original Motif Original Motif Forward 2 15 0.031947 Species: Mus musculus Original motif 0.185864 0.201179 0.183663 0.429294 0.371100 0.233868 0.122934 0.272098 0.249563 0.171285 0.128851 0.450301 0.582940 0.043382 0.129099 0.244578 0.041400 0.395349 0.497087 0.066163 0.759123 0.009670 0.005936 0.225270 0.056579 0.008662 0.003986 0.930772 0.043968 0.865783 0.056001 0.034249 0.962748 0.003731 0.003265 0.030256 0.971318 0.003542 0.012299 0.012841 0.937558 0.003991 0.020195 0.038256 0.125931 0.057976 0.798081 0.018012 0.209401 0.172342 0.483980 0.134277 0.485703 0.129227 0.309936 0.075134 0.397027 0.195902 0.152395 0.254676 0.311636 0.231510 0.157732 0.299122 0.320965 0.206031 0.164299 0.308705 Consensus sequence: HHHASATCAAAGVRHHH Reverse complement motif 0.308705 0.206031 0.164299 0.320965 0.299122 0.231510 0.157732 0.311636 0.254676 0.195902 0.152395 0.397027 0.075134 0.129227 0.309936 0.485703 0.209401 0.483980 0.172342 0.134277 0.125931 0.798081 0.057976 0.018012 0.038256 0.003991 0.020195 0.937558 0.012841 0.003542 0.012299 0.971318 0.030256 0.003731 0.003265 0.962748 0.043968 0.056001 0.865783 0.034249 0.930772 0.008662 0.003986 0.056579 0.225270 0.009670 0.005936 0.759123 0.041400 0.497087 0.395349 0.066163 0.244578 0.043382 0.129099 0.582940 0.450301 0.171285 0.128851 0.249563 0.272098 0.233868 0.122934 0.371100 0.429294 0.201179 0.183663 0.185864 Consensus sequence: HHHKVCTTTGATSTHHH Alignment: HHHASATCAAAGVRHHH -BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00054 Tcf7_primary Original Motif Original Motif Backward 2 15 0.032779 Species: Mus musculus Original motif 0.170811 0.196976 0.220503 0.411710 0.337231 0.228482 0.140137 0.294150 0.299312 0.173780 0.143426 0.383481 0.603957 0.053557 0.128214 0.214271 0.036338 0.377925 0.534647 0.051091 0.725865 0.010314 0.008501 0.255320 0.067855 0.007849 0.004559 0.919737 0.049387 0.815496 0.098330 0.036787 0.960514 0.005036 0.005137 0.029313 0.960631 0.004550 0.018815 0.016004 0.935245 0.005169 0.023866 0.035720 0.159760 0.060340 0.761341 0.018559 0.228534 0.153897 0.523052 0.094517 0.557984 0.123512 0.254154 0.064350 0.490252 0.211976 0.124557 0.173215 0.310463 0.250279 0.132612 0.306646 0.332720 0.248937 0.120633 0.297711 Consensus sequence: BHHASATCAAAGGAHHH Reverse complement motif 0.297711 0.248937 0.120633 0.332720 0.306646 0.250279 0.132612 0.310463 0.173215 0.211976 0.124557 0.490252 0.064350 0.123512 0.254154 0.557984 0.228534 0.523052 0.153897 0.094517 0.159760 0.761341 0.060340 0.018559 0.035720 0.005169 0.023866 0.935245 0.016004 0.004550 0.018815 0.960631 0.029313 0.005036 0.005137 0.960514 0.049387 0.098330 0.815496 0.036787 0.919737 0.007849 0.004559 0.067855 0.255320 0.010314 0.008501 0.725865 0.036338 0.534647 0.377925 0.051091 0.214271 0.053557 0.128214 0.603957 0.383481 0.173780 0.143426 0.299312 0.294150 0.228482 0.140137 0.337231 0.411710 0.196976 0.220503 0.170811 Consensus sequence: HHHTCCTTTGATSTHHV Alignment: BHHASATCAAAGGAHHH -BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00082 Zfp187_secondary Original Motif Reverse Complement Backward 2 15 0.033418 Species: Mus musculus Original motif 0.173063 0.169680 0.440836 0.216421 0.353277 0.179996 0.249403 0.217325 0.307337 0.038055 0.616380 0.038228 0.316636 0.564670 0.023732 0.094962 0.015484 0.923764 0.019439 0.041313 0.011243 0.956300 0.009443 0.023014 0.062273 0.107531 0.010739 0.819456 0.126670 0.201521 0.192005 0.479803 0.093090 0.045924 0.835792 0.025194 0.020165 0.015483 0.009567 0.954786 0.010873 0.672448 0.004559 0.312121 0.018002 0.846860 0.017605 0.117533 0.335703 0.408170 0.104095 0.152031 0.150308 0.362296 0.067408 0.419988 0.286490 0.242211 0.176532 0.294767 0.265022 0.249655 0.272219 0.213104 Consensus sequence: DDGMCCTBGTCCHYHV Reverse complement motif 0.265022 0.272219 0.249655 0.213104 0.294767 0.242211 0.176532 0.286490 0.419988 0.362296 0.067408 0.150308 0.335703 0.104095 0.408170 0.152031 0.018002 0.017605 0.846860 0.117533 0.010873 0.004559 0.672448 0.312121 0.954786 0.015483 0.009567 0.020165 0.093090 0.835792 0.045924 0.025194 0.479803 0.201521 0.192005 0.126670 0.819456 0.107531 0.010739 0.062273 0.011243 0.009443 0.956300 0.023014 0.015484 0.019439 0.923764 0.041313 0.316636 0.023732 0.564670 0.094962 0.307337 0.616380 0.038055 0.038228 0.217325 0.179996 0.249403 0.353277 0.173063 0.440836 0.169680 0.216421 Consensus sequence: VHMDGGACVAGGRCDH Alignment: VHMDGGACVAGGRCDH BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Original Motif Original Motif Backward 2 15 0.035254 Species: Mus musculus Original motif 0.427843 0.231210 0.119424 0.221523 0.196506 0.239531 0.304906 0.259057 0.302488 0.156922 0.290190 0.250401 0.433872 0.149126 0.196496 0.220506 0.258426 0.076511 0.475100 0.189963 0.841714 0.046453 0.099915 0.011918 0.983853 0.001612 0.001362 0.013174 0.003460 0.982032 0.005728 0.008780 0.989743 0.002253 0.002020 0.005984 0.990761 0.003397 0.002843 0.003000 0.770864 0.003540 0.001549 0.224048 0.235342 0.002598 0.757383 0.004677 0.371426 0.089574 0.529959 0.009040 0.480804 0.196949 0.240413 0.081833 0.187158 0.355102 0.216599 0.241142 0.248006 0.232182 0.157452 0.362360 0.403367 0.177684 0.164649 0.254300 Consensus sequence: HBDDDAACAAAGRVBHH Reverse complement motif 0.254300 0.177684 0.164649 0.403367 0.362360 0.232182 0.157452 0.248006 0.187158 0.216599 0.355102 0.241142 0.081833 0.196949 0.240413 0.480804 0.371426 0.529959 0.089574 0.009040 0.235342 0.757383 0.002598 0.004677 0.224048 0.003540 0.001549 0.770864 0.003000 0.003397 0.002843 0.990761 0.005984 0.002253 0.002020 0.989743 0.003460 0.005728 0.982032 0.008780 0.013174 0.001612 0.001362 0.983853 0.011918 0.046453 0.099915 0.841714 0.258426 0.475100 0.076511 0.189963 0.220506 0.149126 0.196496 0.433872 0.250401 0.156922 0.290190 0.302488 0.196506 0.304906 0.239531 0.259057 0.221523 0.231210 0.119424 0.427843 Consensus sequence: HHBBMCTTTGTTHDDBH Alignment: HBDDDAACAAAGRVBHH -BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Original Motif Original Motif Backward 2 15 0.035878 Species: Mus musculus Original motif 0.351812 0.238467 0.143954 0.265768 0.195246 0.235838 0.281473 0.287443 0.349478 0.172616 0.210739 0.267167 0.484061 0.110438 0.173131 0.232370 0.276692 0.070713 0.479604 0.172991 0.859124 0.044167 0.083951 0.012758 0.975608 0.002029 0.002285 0.020079 0.006422 0.978485 0.007124 0.007969 0.987489 0.003025 0.002868 0.006617 0.987739 0.005463 0.002730 0.004067 0.693013 0.004067 0.002445 0.300475 0.189100 0.003677 0.801408 0.005814 0.352090 0.072517 0.567737 0.007656 0.542316 0.176545 0.192768 0.088371 0.196382 0.304176 0.205985 0.293457 0.289415 0.201358 0.182937 0.326290 0.385801 0.216362 0.152363 0.245475 Consensus sequence: HBDDRAACAAAGRABHH Reverse complement motif 0.245475 0.216362 0.152363 0.385801 0.326290 0.201358 0.182937 0.289415 0.196382 0.205985 0.304176 0.293457 0.088371 0.176545 0.192768 0.542316 0.352090 0.567737 0.072517 0.007656 0.189100 0.801408 0.003677 0.005814 0.300475 0.004067 0.002445 0.693013 0.004067 0.005463 0.002730 0.987739 0.006617 0.003025 0.002868 0.987489 0.006422 0.007124 0.978485 0.007969 0.020079 0.002029 0.002285 0.975608 0.012758 0.044167 0.083951 0.859124 0.276692 0.479604 0.070713 0.172991 0.232370 0.110438 0.173131 0.484061 0.267167 0.172616 0.210739 0.349478 0.287443 0.235838 0.281473 0.195246 0.265768 0.238467 0.143954 0.351812 Consensus sequence: HHBTMCTTTGTTMDDVH Alignment: HBDDRAACAAAGRABHH -BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00101 Sox12_secondary Reverse Complement Reverse Complement Backward 2 15 0.037473 Species: Mus musculus Original motif 0.378898 0.318901 0.205859 0.096341 0.352524 0.321236 0.224504 0.101736 0.323551 0.182056 0.210897 0.283496 0.135539 0.325230 0.208031 0.331200 0.663106 0.055471 0.154459 0.126963 0.051748 0.292567 0.537307 0.118378 0.886489 0.042361 0.035742 0.035408 0.043647 0.688744 0.094358 0.173252 0.882052 0.039818 0.018899 0.059231 0.864171 0.036011 0.068363 0.031455 0.790158 0.046868 0.041594 0.121379 0.087447 0.143905 0.707798 0.060849 0.295919 0.132479 0.485703 0.085899 0.653156 0.133004 0.110012 0.103828 0.351764 0.131771 0.217730 0.298736 0.203977 0.196773 0.099958 0.499292 Consensus sequence: VVDBASACAAAGRADH Reverse complement motif 0.499292 0.196773 0.099958 0.203977 0.298736 0.131771 0.217730 0.351764 0.103828 0.133004 0.110012 0.653156 0.295919 0.485703 0.132479 0.085899 0.087447 0.707798 0.143905 0.060849 0.121379 0.046868 0.041594 0.790158 0.031455 0.036011 0.068363 0.864171 0.059231 0.039818 0.018899 0.882052 0.043647 0.094358 0.688744 0.173252 0.035408 0.042361 0.035742 0.886489 0.051748 0.537307 0.292567 0.118378 0.126963 0.055471 0.154459 0.663106 0.331200 0.325230 0.208031 0.135539 0.283496 0.182056 0.210897 0.323551 0.101736 0.321236 0.224504 0.352524 0.096341 0.318901 0.205859 0.378898 Consensus sequence: HDTMCTTTGTSTVDBB Alignment: HDTMCTTTGTSTVDBB TGRCCTKTGHCCKAB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00083 Tcf7l2_primary Original Motif Reverse Complement Forward 2 15 0.037976 Species: Mus musculus Original motif 0.285725 0.187143 0.254855 0.272277 0.276264 0.157893 0.258178 0.307665 0.238788 0.161120 0.254018 0.346074 0.076041 0.333901 0.150903 0.439156 0.093376 0.526578 0.180529 0.199517 0.010827 0.880320 0.034150 0.074703 0.016546 0.023834 0.000940 0.958680 0.007166 0.008215 0.001941 0.982678 0.029634 0.001363 0.001379 0.967625 0.010872 0.031751 0.926186 0.031190 0.949407 0.000760 0.002581 0.047253 0.109203 0.001362 0.002094 0.887341 0.044198 0.567994 0.353059 0.034749 0.222623 0.142360 0.041281 0.593736 0.358872 0.167597 0.220534 0.252997 0.233072 0.141480 0.230985 0.394463 0.350703 0.243129 0.233961 0.172207 Consensus sequence: DDDYCCTTTGATSTDDV Reverse complement motif 0.172207 0.243129 0.233961 0.350703 0.394463 0.141480 0.230985 0.233072 0.252997 0.167597 0.220534 0.358872 0.593736 0.142360 0.041281 0.222623 0.044198 0.353059 0.567994 0.034749 0.887341 0.001362 0.002094 0.109203 0.047253 0.000760 0.002581 0.949407 0.010872 0.926186 0.031751 0.031190 0.967625 0.001363 0.001379 0.029634 0.982678 0.008215 0.001941 0.007166 0.958680 0.023834 0.000940 0.016546 0.010827 0.034150 0.880320 0.074703 0.093376 0.180529 0.526578 0.199517 0.439156 0.333901 0.150903 0.076041 0.346074 0.161120 0.254018 0.238788 0.307665 0.157893 0.258178 0.276264 0.272277 0.187143 0.254855 0.285725 Consensus sequence: BDDASATCAAAGGMDDD Alignment: BDDASATCAAAGGMDDD -BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Reverse Complement Backward 2 15 0.038273 Species: Mus musculus Original motif 0.204514 0.198353 0.171218 0.425915 0.167188 0.296785 0.246082 0.289946 0.267330 0.148001 0.398674 0.185994 0.549386 0.060167 0.337100 0.053347 0.050746 0.900013 0.022169 0.027073 0.037905 0.920332 0.008360 0.033403 0.410356 0.566702 0.016267 0.006675 0.009526 0.982354 0.001060 0.007060 0.204292 0.001084 0.748567 0.046056 0.003955 0.988490 0.002821 0.004735 0.004264 0.988826 0.004311 0.002598 0.002758 0.929549 0.001244 0.066448 0.260332 0.421683 0.024720 0.293265 0.184798 0.247697 0.085237 0.482268 0.347537 0.197344 0.139961 0.315159 0.255281 0.166620 0.242297 0.335802 Consensus sequence: HBDRCCMCGCCCHHHD Reverse complement motif 0.335802 0.166620 0.242297 0.255281 0.315159 0.197344 0.139961 0.347537 0.482268 0.247697 0.085237 0.184798 0.260332 0.024720 0.421683 0.293265 0.002758 0.001244 0.929549 0.066448 0.004264 0.004311 0.988826 0.002598 0.003955 0.002821 0.988490 0.004735 0.204292 0.748567 0.001084 0.046056 0.009526 0.001060 0.982354 0.007060 0.410356 0.016267 0.566702 0.006675 0.037905 0.008360 0.920332 0.033403 0.050746 0.022169 0.900013 0.027073 0.053347 0.060167 0.337100 0.549386 0.267330 0.398674 0.148001 0.185994 0.167188 0.246082 0.296785 0.289946 0.425915 0.198353 0.171218 0.204514 Consensus sequence: DHHDGGGCGRGGKHBH Alignment: DHHDGGGCGRGGKHBH BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00055 Hbp1_secondary Original Motif Reverse Complement Forward 1 15 0.039717 Species: Mus musculus Original motif 0.313621 0.149049 0.200899 0.336432 0.262644 0.147616 0.334882 0.254859 0.175848 0.137857 0.292272 0.394023 0.045910 0.364107 0.180535 0.409448 0.093235 0.718630 0.093516 0.094619 0.095552 0.724866 0.044589 0.134993 0.058227 0.785149 0.029814 0.126810 0.897368 0.023735 0.019064 0.059832 0.043826 0.041750 0.020731 0.893692 0.044268 0.013557 0.014689 0.927487 0.102208 0.026005 0.709573 0.162214 0.058404 0.046118 0.135257 0.760221 0.303689 0.280676 0.320259 0.095375 0.258633 0.262177 0.197029 0.282161 0.564761 0.122466 0.194691 0.118082 0.104738 0.358061 0.310533 0.226668 0.267450 0.230099 0.197859 0.304593 Consensus sequence: DDDYCCCATTGTVHABH Reverse complement motif 0.304593 0.230099 0.197859 0.267450 0.104738 0.310533 0.358061 0.226668 0.118082 0.122466 0.194691 0.564761 0.282161 0.262177 0.197029 0.258633 0.303689 0.320259 0.280676 0.095375 0.760221 0.046118 0.135257 0.058404 0.102208 0.709573 0.026005 0.162214 0.927487 0.013557 0.014689 0.044268 0.893692 0.041750 0.020731 0.043826 0.059832 0.023735 0.019064 0.897368 0.058227 0.029814 0.785149 0.126810 0.095552 0.044589 0.724866 0.134993 0.093235 0.093516 0.718630 0.094619 0.409448 0.364107 0.180535 0.045910 0.394023 0.137857 0.292272 0.175848 0.262644 0.334882 0.147616 0.254859 0.336432 0.149049 0.200899 0.313621 Consensus sequence: HBTHVACAATGGGMDHD Alignment: DDDYCCCATTGTVHABH BTRGGDCARAGGKCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 37 Motif name: PLAG1 Original motif 0.000000 0.000000 1.000000 0.000000 0.166667 0.000000 0.777778 0.055556 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.944444 0.055556 0.000000 0.777778 0.222222 0.000000 0.000000 0.833333 0.055556 0.111111 0.222222 0.555556 0.055556 0.166667 0.666667 0.000000 0.000000 0.333333 0.611111 0.277778 0.111111 0.000000 0.111111 0.000000 0.777778 0.111111 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.888889 0.111111 0.111111 0.000000 0.888889 0.000000 Consensus sequence: GGGGCCCAAGGGGG Reserve complement motif 0.111111 0.888889 0.000000 0.000000 0.000000 0.888889 0.000000 0.111111 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.111111 0.777778 0.000000 0.111111 0.000000 0.277778 0.111111 0.611111 0.333333 0.000000 0.000000 0.666667 0.222222 0.055556 0.555556 0.166667 0.000000 0.055556 0.833333 0.111111 0.000000 0.222222 0.777778 0.000000 0.000000 0.944444 0.000000 0.055556 0.000000 1.000000 0.000000 0.000000 0.166667 0.777778 0.000000 0.055556 0.000000 1.000000 0.000000 0.000000 Consensus sequence: CCCCCTTGGGCCCC ************************************************************************ Best Matches for Motif ID 37 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00102 Zic1_primary Reverse Complement Reverse Complement Forward 1 14 0.049953 Species: Mus musculus Original motif 0.174040 0.367918 0.270176 0.187866 0.359560 0.309872 0.111047 0.219520 0.094468 0.790352 0.026034 0.089145 0.114860 0.779490 0.050895 0.054755 0.105195 0.837712 0.031857 0.025237 0.045234 0.825039 0.073990 0.055737 0.145555 0.592986 0.228415 0.033044 0.045273 0.175001 0.607615 0.172111 0.055737 0.073990 0.825039 0.045234 0.025237 0.031857 0.837712 0.105195 0.054755 0.050895 0.779490 0.114860 0.089145 0.026034 0.790352 0.094468 0.060833 0.067787 0.717352 0.154028 0.097742 0.194545 0.591608 0.116104 Consensus sequence: BHCCCCCGGGGGGG Reverse complement motif 0.097742 0.591608 0.194545 0.116104 0.060833 0.717352 0.067787 0.154028 0.089145 0.790352 0.026034 0.094468 0.054755 0.779490 0.050895 0.114860 0.025237 0.837712 0.031857 0.105195 0.055737 0.825039 0.073990 0.045234 0.045273 0.607615 0.175001 0.172111 0.145555 0.228415 0.592986 0.033044 0.045234 0.073990 0.825039 0.055737 0.105195 0.031857 0.837712 0.025237 0.114860 0.050895 0.779490 0.054755 0.094468 0.026034 0.790352 0.089145 0.219520 0.309872 0.111047 0.359560 0.174040 0.270176 0.367918 0.187866 Consensus sequence: CCCCCCCGGGGGHB Alignment: CCCCCCCGGGGGHB CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primary Reverse Complement Original Motif Backward 1 14 0.054061 Species: Mus musculus Original motif 0.183797 0.268049 0.330111 0.218043 0.127599 0.330310 0.243614 0.298477 0.143199 0.188046 0.268593 0.400162 0.214690 0.205230 0.247090 0.332990 0.294688 0.299104 0.327152 0.079056 0.221909 0.193223 0.480155 0.104712 0.444072 0.068239 0.481838 0.005852 0.006182 0.015429 0.901278 0.077111 0.766535 0.111138 0.121632 0.000696 0.014848 0.973961 0.000298 0.010893 0.001807 0.992200 0.002669 0.003324 0.795344 0.140510 0.018576 0.045571 0.006990 0.988200 0.002510 0.002299 0.154898 0.842296 0.000998 0.001808 0.029577 0.919262 0.006935 0.044226 0.677987 0.032075 0.185065 0.104874 0.195132 0.364580 0.319321 0.120967 0.225412 0.115034 0.612849 0.046705 0.548628 0.058900 0.162857 0.229616 0.112531 0.340331 0.165910 0.381227 0.073029 0.303078 0.363896 0.259997 0.561485 0.260567 0.092979 0.084969 0.132283 0.457691 0.140159 0.269867 Consensus sequence: BBBDVVRGACCACCCAVGABBAB Reverse complement motif 0.132283 0.140159 0.457691 0.269867 0.084969 0.260567 0.092979 0.561485 0.073029 0.363896 0.303078 0.259997 0.381227 0.340331 0.165910 0.112531 0.229616 0.058900 0.162857 0.548628 0.225412 0.612849 0.115034 0.046705 0.195132 0.319321 0.364580 0.120967 0.104874 0.032075 0.185065 0.677987 0.029577 0.006935 0.919262 0.044226 0.154898 0.000998 0.842296 0.001808 0.006990 0.002510 0.988200 0.002299 0.045571 0.140510 0.018576 0.795344 0.001807 0.002669 0.992200 0.003324 0.014848 0.000298 0.973961 0.010893 0.000696 0.111138 0.121632 0.766535 0.006182 0.901278 0.015429 0.077111 0.444072 0.481838 0.068239 0.005852 0.221909 0.480155 0.193223 0.104712 0.294688 0.327152 0.299104 0.079056 0.332990 0.205230 0.247090 0.214690 0.400162 0.188046 0.268593 0.143199 0.127599 0.243614 0.330310 0.298477 0.183797 0.330111 0.268049 0.218043 Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB Alignment: BTBVTCVTGGGTGGTCMVVDVBB ---------CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_primary Reverse Complement Original Motif Backward 1 14 0.054841 Species: Mus musculus Original motif 0.171475 0.300729 0.275648 0.252148 0.274948 0.494479 0.090926 0.139646 0.136266 0.716563 0.033328 0.113843 0.116272 0.772964 0.046083 0.064680 0.103529 0.835329 0.032215 0.028927 0.057023 0.813129 0.071277 0.058571 0.057483 0.766273 0.157290 0.018955 0.071535 0.110226 0.631760 0.186479 0.058571 0.071277 0.813129 0.057023 0.028927 0.032215 0.835329 0.103529 0.064680 0.046083 0.772964 0.116272 0.113843 0.033328 0.716563 0.136266 0.119744 0.068294 0.609218 0.202743 0.065793 0.215443 0.562951 0.155813 0.178819 0.196535 0.205955 0.418691 Consensus sequence: BMCCCCCGGGGGGGB Reverse complement motif 0.418691 0.196535 0.205955 0.178819 0.065793 0.562951 0.215443 0.155813 0.119744 0.609218 0.068294 0.202743 0.113843 0.716563 0.033328 0.136266 0.064680 0.772964 0.046083 0.116272 0.028927 0.835329 0.032215 0.103529 0.058571 0.813129 0.071277 0.057023 0.071535 0.631760 0.110226 0.186479 0.057483 0.157290 0.766273 0.018955 0.057023 0.071277 0.813129 0.058571 0.103529 0.032215 0.835329 0.028927 0.116272 0.046083 0.772964 0.064680 0.136266 0.033328 0.716563 0.113843 0.274948 0.090926 0.494479 0.139646 0.171475 0.275648 0.300729 0.252148 Consensus sequence: VCCCCCCCGGGGGRB Alignment: VCCCCCCCGGGGGRB -CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_secondary Original Motif Reverse Complement Backward 1 14 0.055678 Species: Mus musculus Original motif 0.198427 0.243196 0.159241 0.399136 0.267754 0.388187 0.116811 0.227248 0.448284 0.056403 0.414623 0.080691 0.031469 0.826323 0.055436 0.086772 0.035527 0.756642 0.022985 0.184845 0.127338 0.316078 0.155806 0.400778 0.135021 0.313650 0.287760 0.263570 0.418892 0.082297 0.068352 0.430460 0.201062 0.044735 0.711358 0.042845 0.038934 0.022320 0.903763 0.034982 0.201790 0.065554 0.460526 0.272130 0.006890 0.786923 0.061853 0.144334 0.460666 0.103658 0.196452 0.239224 0.092272 0.204611 0.390375 0.312742 Consensus sequence: HHRCCBBWGGDCDB Reverse complement motif 0.092272 0.390375 0.204611 0.312742 0.239224 0.103658 0.196452 0.460666 0.006890 0.061853 0.786923 0.144334 0.201790 0.460526 0.065554 0.272130 0.038934 0.903763 0.022320 0.034982 0.201062 0.711358 0.044735 0.042845 0.430460 0.082297 0.068352 0.418892 0.135021 0.287760 0.313650 0.263570 0.400778 0.316078 0.155806 0.127338 0.035527 0.022985 0.756642 0.184845 0.031469 0.055436 0.826323 0.086772 0.080691 0.056403 0.414623 0.448284 0.267754 0.116811 0.388187 0.227248 0.399136 0.243196 0.159241 0.198427 Consensus sequence: BDGHCCWBVGGKDH Alignment: HHRCCBBWGGDCDB GGGGCCCAAGGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00006 Zic3_primary Reverse Complement Original Motif Forward 2 14 0.056976 Species: Mus musculus Original motif 0.133123 0.374622 0.252864 0.239392 0.305344 0.451195 0.093638 0.149822 0.125347 0.723516 0.027695 0.123442 0.129457 0.754873 0.045215 0.070455 0.117681 0.809987 0.036742 0.035590 0.046565 0.817263 0.077300 0.058872 0.047132 0.790594 0.143506 0.018768 0.059681 0.087688 0.665195 0.187436 0.058872 0.077300 0.817263 0.046565 0.035590 0.036742 0.809987 0.117681 0.070455 0.045215 0.754873 0.129457 0.123442 0.027695 0.723516 0.125347 0.104029 0.069439 0.636026 0.190506 0.070968 0.197801 0.581172 0.150060 0.147077 0.235294 0.230097 0.387531 Consensus sequence: BMCCCCCGGGGGGGB Reverse complement motif 0.387531 0.235294 0.230097 0.147077 0.070968 0.581172 0.197801 0.150060 0.104029 0.636026 0.069439 0.190506 0.123442 0.723516 0.027695 0.125347 0.070455 0.754873 0.045215 0.129457 0.035590 0.809987 0.036742 0.117681 0.058872 0.817263 0.077300 0.046565 0.059681 0.665195 0.087688 0.187436 0.047132 0.143506 0.790594 0.018768 0.046565 0.077300 0.817263 0.058872 0.117681 0.036742 0.809987 0.035590 0.129457 0.045215 0.754873 0.070455 0.125347 0.027695 0.723516 0.123442 0.305344 0.093638 0.451195 0.149822 0.133123 0.252864 0.374622 0.239392 Consensus sequence: VCCCCCCCGGGGGRB Alignment: BMCCCCCGGGGGGGB -CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primary Reverse Complement Original Motif Backward 9 14 0.057350 Species: Mus musculus Original motif 0.180868 0.321661 0.134642 0.362829 0.232215 0.134289 0.315356 0.318141 0.065068 0.093681 0.569842 0.271408 0.370822 0.229680 0.154738 0.244759 0.323039 0.182873 0.173588 0.320500 0.175039 0.266898 0.276080 0.281984 0.412669 0.147730 0.146326 0.293275 0.325953 0.028805 0.629596 0.015646 0.003017 0.001766 0.979711 0.015507 0.888973 0.040666 0.069420 0.000941 0.017309 0.979155 0.000899 0.002637 0.001732 0.988816 0.004856 0.004596 0.889763 0.078125 0.010384 0.021729 0.007566 0.987081 0.001421 0.003932 0.027797 0.966593 0.000878 0.004731 0.025816 0.867003 0.065749 0.041433 0.220658 0.075256 0.582904 0.121182 0.088946 0.283695 0.565345 0.062015 0.328012 0.241332 0.305901 0.124755 0.307302 0.137589 0.375928 0.179181 0.298752 0.231470 0.315255 0.154524 0.094565 0.142901 0.705696 0.056838 Consensus sequence: HDGHHBHRGACCACCCGSVDVG Reverse complement motif 0.094565 0.705696 0.142901 0.056838 0.298752 0.315255 0.231470 0.154524 0.307302 0.375928 0.137589 0.179181 0.124755 0.241332 0.305901 0.328012 0.088946 0.565345 0.283695 0.062015 0.220658 0.582904 0.075256 0.121182 0.025816 0.065749 0.867003 0.041433 0.027797 0.000878 0.966593 0.004731 0.007566 0.001421 0.987081 0.003932 0.021729 0.078125 0.010384 0.889763 0.001732 0.004856 0.988816 0.004596 0.017309 0.000899 0.979155 0.002637 0.000941 0.040666 0.069420 0.888973 0.003017 0.979711 0.001766 0.015507 0.325953 0.629596 0.028805 0.015646 0.293275 0.147730 0.146326 0.412669 0.281984 0.266898 0.276080 0.175039 0.320500 0.182873 0.173588 0.323039 0.244759 0.229680 0.154738 0.370822 0.065068 0.569842 0.093681 0.271408 0.318141 0.134289 0.315356 0.232215 0.362829 0.321661 0.134642 0.180868 Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH Alignment: HDGHHBHRGACCACCCGSVDVG CCCCCTTGGGCCCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Reverse Complement Reverse Complement Forward 9 14 0.057902 Species: Mus musculus Original motif 0.214165 0.143436 0.372522 0.269876 0.314445 0.406003 0.160351 0.119201 0.137147 0.092924 0.042921 0.727007 0.044121 0.072843 0.051741 0.831295 0.261292 0.324124 0.298498 0.116086 0.258125 0.323243 0.263362 0.155271 0.204557 0.589399 0.107153 0.098891 0.371021 0.244027 0.291102 0.093849 0.096327 0.572718 0.011797 0.319159 0.027282 0.046183 0.844519 0.082016 0.018921 0.012887 0.915917 0.052275 0.364793 0.166722 0.084229 0.384256 0.028216 0.011233 0.951056 0.009495 0.054974 0.004738 0.890377 0.049911 0.006802 0.312915 0.134247 0.546036 0.241289 0.628210 0.104788 0.025713 0.237863 0.302807 0.213018 0.246311 0.349399 0.203220 0.086635 0.360746 0.386634 0.144693 0.246895 0.221779 0.425101 0.354676 0.093374 0.126849 0.060272 0.391320 0.104905 0.443503 0.162090 0.190233 0.227433 0.420244 Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Reverse complement motif 0.420244 0.190233 0.227433 0.162090 0.443503 0.391320 0.104905 0.060272 0.126849 0.354676 0.093374 0.425101 0.221779 0.144693 0.246895 0.386634 0.360746 0.203220 0.086635 0.349399 0.237863 0.213018 0.302807 0.246311 0.241289 0.104788 0.628210 0.025713 0.546036 0.312915 0.134247 0.006802 0.054974 0.890377 0.004738 0.049911 0.028216 0.951056 0.011233 0.009495 0.384256 0.166722 0.084229 0.364793 0.018921 0.915917 0.012887 0.052275 0.027282 0.844519 0.046183 0.082016 0.096327 0.011797 0.572718 0.319159 0.093849 0.244027 0.291102 0.371021 0.204557 0.107153 0.589399 0.098891 0.258125 0.263362 0.323243 0.155271 0.261292 0.298498 0.324124 0.116086 0.831295 0.072843 0.051741 0.044121 0.727007 0.092924 0.042921 0.137147 0.314445 0.160351 0.406003 0.119201 0.214165 0.372522 0.143436 0.269876 Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH Alignment: VMYDHDGMCCHCCKBGVVAAVH --------CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Reverse Complement Reverse Complement Backward 9 14 0.058066 Species: Mus musculus Original motif 0.331499 0.188505 0.182841 0.297156 0.328961 0.213025 0.273530 0.184484 0.197213 0.129292 0.524914 0.148581 0.274491 0.226406 0.312118 0.186986 0.103231 0.393726 0.364988 0.138055 0.552594 0.166422 0.186262 0.094722 0.157618 0.064773 0.616497 0.161112 0.139166 0.176098 0.621185 0.063551 0.748420 0.062398 0.012447 0.176735 0.116584 0.009438 0.860326 0.013653 0.005030 0.003646 0.974877 0.016447 0.055257 0.007181 0.921760 0.015802 0.032748 0.058249 0.052709 0.856293 0.105606 0.872231 0.014370 0.007793 0.019480 0.497379 0.125899 0.357242 0.478582 0.269713 0.061464 0.190242 0.253985 0.287006 0.201320 0.257689 0.319384 0.210231 0.175842 0.294543 0.222123 0.287802 0.201294 0.288782 0.139951 0.376041 0.081133 0.402875 0.213450 0.343835 0.383676 0.059039 0.322294 0.355918 0.148062 0.173725 Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Reverse complement motif 0.322294 0.148062 0.355918 0.173725 0.213450 0.383676 0.343835 0.059039 0.402875 0.376041 0.081133 0.139951 0.288782 0.287802 0.201294 0.222123 0.294543 0.210231 0.175842 0.319384 0.253985 0.201320 0.287006 0.257689 0.190242 0.269713 0.061464 0.478582 0.019480 0.125899 0.497379 0.357242 0.105606 0.014370 0.872231 0.007793 0.856293 0.058249 0.052709 0.032748 0.055257 0.921760 0.007181 0.015802 0.005030 0.974877 0.003646 0.016447 0.116584 0.860326 0.009438 0.013653 0.176735 0.062398 0.012447 0.748420 0.139166 0.621185 0.176098 0.063551 0.157618 0.616497 0.064773 0.161112 0.094722 0.166422 0.186262 0.552594 0.103231 0.364988 0.393726 0.138055 0.274491 0.312118 0.226406 0.186986 0.197213 0.524914 0.129292 0.148581 0.184484 0.213025 0.273530 0.328961 0.297156 0.188505 0.182841 0.331499 Consensus sequence: DVMHHDHKGACCCTCCTSVCBH Alignment: DVMHHDHKGACCCTCCTSVCBH CCCCCTTGGGCCCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Reverse Complement Reverse Complement Backward 1 14 0.059745 Species: Mus musculus Original motif 0.204923 0.208846 0.365383 0.220848 0.294304 0.300143 0.167287 0.238266 0.109711 0.619514 0.117379 0.153396 0.178979 0.378580 0.230177 0.212264 0.159594 0.542602 0.118178 0.179627 0.125206 0.430074 0.151826 0.292894 0.097692 0.709845 0.116956 0.075506 0.148292 0.565912 0.037632 0.248164 0.077951 0.034190 0.855503 0.032356 0.001657 0.001061 0.971877 0.025405 0.001926 0.001084 0.991712 0.005278 0.033031 0.012001 0.057796 0.897171 0.002723 0.002647 0.993348 0.001281 0.003261 0.000963 0.987199 0.008577 0.000611 0.090925 0.074857 0.833608 0.015299 0.978878 0.004949 0.000874 0.013368 0.600902 0.033485 0.352245 0.231949 0.149575 0.118804 0.499672 0.267580 0.186002 0.371242 0.175176 0.264884 0.223483 0.110082 0.401551 0.221365 0.170121 0.179559 0.428955 0.112997 0.692930 0.139981 0.054092 0.460305 0.207883 0.155111 0.176702 Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Reverse complement motif 0.176702 0.207883 0.155111 0.460305 0.112997 0.139981 0.692930 0.054092 0.428955 0.170121 0.179559 0.221365 0.401551 0.223483 0.110082 0.264884 0.267580 0.371242 0.186002 0.175176 0.499672 0.149575 0.118804 0.231949 0.013368 0.033485 0.600902 0.352245 0.015299 0.004949 0.978878 0.000874 0.833608 0.090925 0.074857 0.000611 0.003261 0.987199 0.000963 0.008577 0.002723 0.993348 0.002647 0.001281 0.897171 0.012001 0.057796 0.033031 0.001926 0.991712 0.001084 0.005278 0.001657 0.971877 0.001061 0.025405 0.077951 0.855503 0.034190 0.032356 0.148292 0.037632 0.565912 0.248164 0.097692 0.116956 0.709845 0.075506 0.125206 0.151826 0.430074 0.292894 0.159594 0.118178 0.542602 0.179627 0.178979 0.230177 0.378580 0.212264 0.109711 0.117379 0.619514 0.153396 0.294304 0.167287 0.300143 0.238266 0.204923 0.365383 0.208846 0.220848 Consensus sequence: HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB ---------CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Reverse Complement Original Motif Backward 1 14 0.059809 Species: Mus musculus Original motif 0.201535 0.165213 0.201324 0.431929 0.136153 0.443451 0.179132 0.241264 0.263149 0.555137 0.067983 0.113731 0.142183 0.737634 0.045722 0.074461 0.044982 0.884112 0.045356 0.025549 0.246434 0.590578 0.022655 0.140333 0.123049 0.591257 0.033072 0.252622 0.018153 0.944742 0.010254 0.026851 0.035459 0.953844 0.003988 0.006709 0.020000 0.954344 0.005966 0.019690 0.015299 0.964390 0.006755 0.013557 0.028565 0.936152 0.011660 0.023623 0.300127 0.517309 0.029700 0.152863 0.159063 0.513443 0.051834 0.275660 0.158172 0.647055 0.133256 0.061516 Consensus sequence: DBCCCCCCCCCCMYC Reverse complement motif 0.158172 0.133256 0.647055 0.061516 0.159063 0.051834 0.513443 0.275660 0.300127 0.029700 0.517309 0.152863 0.028565 0.011660 0.936152 0.023623 0.015299 0.006755 0.964390 0.013557 0.020000 0.005966 0.954344 0.019690 0.035459 0.003988 0.953844 0.006709 0.018153 0.010254 0.944742 0.026851 0.123049 0.033072 0.591257 0.252622 0.246434 0.022655 0.590578 0.140333 0.044982 0.045356 0.884112 0.025549 0.142183 0.045722 0.737634 0.074461 0.263149 0.067983 0.555137 0.113731 0.136153 0.179132 0.443451 0.241264 0.431929 0.165213 0.201324 0.201535 Consensus sequence: GKRGGGGGGGGGGBD Alignment: DBCCCCCCCCCCMYC -CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 38 Motif name: NR2F1 Original motif 0.000000 0.000000 0.153846 0.846154 0.076923 0.000000 0.923077 0.000000 0.923077 0.000000 0.076923 0.000000 0.461538 0.538462 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.230769 0.000000 0.769231 0.000000 0.153846 0.000000 0.846154 0.076923 0.000000 0.000000 0.923077 0.153846 0.000000 0.846154 0.000000 0.461538 0.307692 0.230769 0.000000 0.461538 0.384615 0.076923 0.076923 0.076923 0.769231 0.076923 0.076923 0.230769 0.461538 0.000000 0.307692 0.000000 0.230769 0.230769 0.538462 Consensus sequence: TGAMCTTTGMMCYT Reserve complement motif 0.538462 0.230769 0.230769 0.000000 0.230769 0.000000 0.461538 0.307692 0.076923 0.076923 0.769231 0.076923 0.076923 0.384615 0.076923 0.461538 0.000000 0.307692 0.230769 0.461538 0.153846 0.846154 0.000000 0.000000 0.923077 0.000000 0.000000 0.076923 0.846154 0.153846 0.000000 0.000000 0.769231 0.230769 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.461538 0.000000 0.538462 0.000000 0.000000 0.000000 0.076923 0.923077 0.076923 0.923077 0.000000 0.000000 0.846154 0.000000 0.153846 0.000000 Consensus sequence: AKGYYCAAAGRTCA ************************************************************************ Best Matches for Motif ID 38 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00083 Tcf7l2_primary Original Motif Original Motif Backward 3 14 0.045236 Species: Mus musculus Original motif 0.285725 0.187143 0.254855 0.272277 0.276264 0.157893 0.258178 0.307665 0.238788 0.161120 0.254018 0.346074 0.076041 0.333901 0.150903 0.439156 0.093376 0.526578 0.180529 0.199517 0.010827 0.880320 0.034150 0.074703 0.016546 0.023834 0.000940 0.958680 0.007166 0.008215 0.001941 0.982678 0.029634 0.001363 0.001379 0.967625 0.010872 0.031751 0.926186 0.031190 0.949407 0.000760 0.002581 0.047253 0.109203 0.001362 0.002094 0.887341 0.044198 0.567994 0.353059 0.034749 0.222623 0.142360 0.041281 0.593736 0.358872 0.167597 0.220534 0.252997 0.233072 0.141480 0.230985 0.394463 0.350703 0.243129 0.233961 0.172207 Consensus sequence: DDDYCCTTTGATSTDDV Reverse complement motif 0.172207 0.243129 0.233961 0.350703 0.394463 0.141480 0.230985 0.233072 0.252997 0.167597 0.220534 0.358872 0.593736 0.142360 0.041281 0.222623 0.044198 0.353059 0.567994 0.034749 0.887341 0.001362 0.002094 0.109203 0.047253 0.000760 0.002581 0.949407 0.010872 0.926186 0.031751 0.031190 0.967625 0.001363 0.001379 0.029634 0.982678 0.008215 0.001941 0.007166 0.958680 0.023834 0.000940 0.016546 0.010827 0.034150 0.880320 0.074703 0.093376 0.180529 0.526578 0.199517 0.439156 0.333901 0.150903 0.076041 0.346074 0.161120 0.254018 0.238788 0.307665 0.157893 0.258178 0.276264 0.272277 0.187143 0.254855 0.285725 Consensus sequence: BDDASATCAAAGGMDDD Alignment: DDDYCCTTTGATSTDDV -TGAMCTTTGMMCYT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Reverse Complement Reverse Complement Backward 2 14 0.045345 Species: Mus musculus Original motif 0.281920 0.214207 0.278077 0.225796 0.325566 0.151435 0.298797 0.224202 0.290253 0.145824 0.243443 0.320480 0.069286 0.404645 0.141614 0.384454 0.070044 0.621448 0.142647 0.165862 0.007295 0.907657 0.038110 0.046938 0.015587 0.018273 0.000658 0.965482 0.005527 0.005886 0.001905 0.986682 0.024512 0.001189 0.001344 0.972955 0.007384 0.025221 0.952270 0.015125 0.966438 0.000630 0.002693 0.030239 0.082252 0.001173 0.001495 0.915080 0.030255 0.677155 0.275323 0.017267 0.199467 0.118815 0.056814 0.624905 0.345445 0.169597 0.216831 0.268127 0.278106 0.150864 0.173693 0.397336 0.251834 0.339733 0.219703 0.188730 Consensus sequence: DDDYCCTTTGATCTDDV Reverse complement motif 0.251834 0.219703 0.339733 0.188730 0.397336 0.150864 0.173693 0.278106 0.268127 0.169597 0.216831 0.345445 0.624905 0.118815 0.056814 0.199467 0.030255 0.275323 0.677155 0.017267 0.915080 0.001173 0.001495 0.082252 0.030239 0.000630 0.002693 0.966438 0.007384 0.952270 0.025221 0.015125 0.972955 0.001189 0.001344 0.024512 0.986682 0.005886 0.001905 0.005527 0.965482 0.018273 0.000658 0.015587 0.007295 0.038110 0.907657 0.046938 0.070044 0.142647 0.621448 0.165862 0.069286 0.141614 0.404645 0.384454 0.320480 0.145824 0.243443 0.290253 0.224202 0.151435 0.298797 0.325566 0.225796 0.214207 0.278077 0.281920 Consensus sequence: VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD --AKGYYCAAAGRTCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Original Motif Reverse Complement Forward 8 14 0.046136 Species: Mus musculus Original motif 0.331499 0.188505 0.182841 0.297156 0.328961 0.213025 0.273530 0.184484 0.197213 0.129292 0.524914 0.148581 0.274491 0.226406 0.312118 0.186986 0.103231 0.393726 0.364988 0.138055 0.552594 0.166422 0.186262 0.094722 0.157618 0.064773 0.616497 0.161112 0.139166 0.176098 0.621185 0.063551 0.748420 0.062398 0.012447 0.176735 0.116584 0.009438 0.860326 0.013653 0.005030 0.003646 0.974877 0.016447 0.055257 0.007181 0.921760 0.015802 0.032748 0.058249 0.052709 0.856293 0.105606 0.872231 0.014370 0.007793 0.019480 0.497379 0.125899 0.357242 0.478582 0.269713 0.061464 0.190242 0.253985 0.287006 0.201320 0.257689 0.319384 0.210231 0.175842 0.294543 0.222123 0.287802 0.201294 0.288782 0.139951 0.376041 0.081133 0.402875 0.213450 0.343835 0.383676 0.059039 0.322294 0.355918 0.148062 0.173725 Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Reverse complement motif 0.322294 0.148062 0.355918 0.173725 0.213450 0.383676 0.343835 0.059039 0.402875 0.376041 0.081133 0.139951 0.288782 0.287802 0.201294 0.222123 0.294543 0.210231 0.175842 0.319384 0.253985 0.201320 0.287006 0.257689 0.190242 0.269713 0.061464 0.478582 0.019480 0.125899 0.497379 0.357242 0.105606 0.014370 0.872231 0.007793 0.856293 0.058249 0.052709 0.032748 0.055257 0.921760 0.007181 0.015802 0.005030 0.974877 0.003646 0.016447 0.116584 0.860326 0.009438 0.013653 0.176735 0.062398 0.012447 0.748420 0.139166 0.621185 0.176098 0.063551 0.157618 0.616497 0.064773 0.161112 0.094722 0.166422 0.186262 0.552594 0.103231 0.364988 0.393726 0.138055 0.274491 0.312118 0.226406 0.186986 0.197213 0.524914 0.129292 0.148581 0.184484 0.213025 0.273530 0.328961 0.297156 0.188505 0.182841 0.331499 Consensus sequence: DVMHHDHKGACCCTCCTSVCBH Alignment: DVMHHDHKGACCCTCCTSVCBH -------TGAMCTTTGMMCYT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00054 Tcf7_primary Reverse Complement Original Motif Backward 2 14 0.046177 Species: Mus musculus Original motif 0.170811 0.196976 0.220503 0.411710 0.337231 0.228482 0.140137 0.294150 0.299312 0.173780 0.143426 0.383481 0.603957 0.053557 0.128214 0.214271 0.036338 0.377925 0.534647 0.051091 0.725865 0.010314 0.008501 0.255320 0.067855 0.007849 0.004559 0.919737 0.049387 0.815496 0.098330 0.036787 0.960514 0.005036 0.005137 0.029313 0.960631 0.004550 0.018815 0.016004 0.935245 0.005169 0.023866 0.035720 0.159760 0.060340 0.761341 0.018559 0.228534 0.153897 0.523052 0.094517 0.557984 0.123512 0.254154 0.064350 0.490252 0.211976 0.124557 0.173215 0.310463 0.250279 0.132612 0.306646 0.332720 0.248937 0.120633 0.297711 Consensus sequence: BHHASATCAAAGGAHHH Reverse complement motif 0.297711 0.248937 0.120633 0.332720 0.306646 0.250279 0.132612 0.310463 0.173215 0.211976 0.124557 0.490252 0.064350 0.123512 0.254154 0.557984 0.228534 0.523052 0.153897 0.094517 0.159760 0.761341 0.060340 0.018559 0.035720 0.005169 0.023866 0.935245 0.016004 0.004550 0.018815 0.960631 0.029313 0.005036 0.005137 0.960514 0.049387 0.098330 0.815496 0.036787 0.919737 0.007849 0.004559 0.067855 0.255320 0.010314 0.008501 0.725865 0.036338 0.534647 0.377925 0.051091 0.214271 0.053557 0.128214 0.603957 0.383481 0.173780 0.143426 0.299312 0.294150 0.228482 0.140137 0.337231 0.411710 0.196976 0.220503 0.170811 Consensus sequence: HHHTCCTTTGATSTHHV Alignment: BHHASATCAAAGGAHHH --AKGYYCAAAGRTCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00058 Tcf3_primary Reverse Complement Original Motif Backward 2 14 0.047363 Species: Mus musculus Original motif 0.185864 0.201179 0.183663 0.429294 0.371100 0.233868 0.122934 0.272098 0.249563 0.171285 0.128851 0.450301 0.582940 0.043382 0.129099 0.244578 0.041400 0.395349 0.497087 0.066163 0.759123 0.009670 0.005936 0.225270 0.056579 0.008662 0.003986 0.930772 0.043968 0.865783 0.056001 0.034249 0.962748 0.003731 0.003265 0.030256 0.971318 0.003542 0.012299 0.012841 0.937558 0.003991 0.020195 0.038256 0.125931 0.057976 0.798081 0.018012 0.209401 0.172342 0.483980 0.134277 0.485703 0.129227 0.309936 0.075134 0.397027 0.195902 0.152395 0.254676 0.311636 0.231510 0.157732 0.299122 0.320965 0.206031 0.164299 0.308705 Consensus sequence: HHHASATCAAAGVRHHH Reverse complement motif 0.308705 0.206031 0.164299 0.320965 0.299122 0.231510 0.157732 0.311636 0.254676 0.195902 0.152395 0.397027 0.075134 0.129227 0.309936 0.485703 0.209401 0.483980 0.172342 0.134277 0.125931 0.798081 0.057976 0.018012 0.038256 0.003991 0.020195 0.937558 0.012841 0.003542 0.012299 0.971318 0.030256 0.003731 0.003265 0.962748 0.043968 0.056001 0.865783 0.034249 0.930772 0.008662 0.003986 0.056579 0.225270 0.009670 0.005936 0.759123 0.041400 0.497087 0.395349 0.066163 0.244578 0.043382 0.129099 0.582940 0.450301 0.171285 0.128851 0.249563 0.272098 0.233868 0.122934 0.371100 0.429294 0.201179 0.183663 0.185864 Consensus sequence: HHHKVCTTTGATSTHHH Alignment: HHHASATCAAAGVRHHH --AKGYYCAAAGRTCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00082 Zfp187_secondary Original Motif Original Motif Forward 1 14 0.048019 Species: Mus musculus Original motif 0.173063 0.169680 0.440836 0.216421 0.353277 0.179996 0.249403 0.217325 0.307337 0.038055 0.616380 0.038228 0.316636 0.564670 0.023732 0.094962 0.015484 0.923764 0.019439 0.041313 0.011243 0.956300 0.009443 0.023014 0.062273 0.107531 0.010739 0.819456 0.126670 0.201521 0.192005 0.479803 0.093090 0.045924 0.835792 0.025194 0.020165 0.015483 0.009567 0.954786 0.010873 0.672448 0.004559 0.312121 0.018002 0.846860 0.017605 0.117533 0.335703 0.408170 0.104095 0.152031 0.150308 0.362296 0.067408 0.419988 0.286490 0.242211 0.176532 0.294767 0.265022 0.249655 0.272219 0.213104 Consensus sequence: DDGMCCTBGTCCHYHV Reverse complement motif 0.265022 0.272219 0.249655 0.213104 0.294767 0.242211 0.176532 0.286490 0.419988 0.362296 0.067408 0.150308 0.335703 0.104095 0.408170 0.152031 0.018002 0.017605 0.846860 0.117533 0.010873 0.004559 0.672448 0.312121 0.954786 0.015483 0.009567 0.020165 0.093090 0.835792 0.045924 0.025194 0.479803 0.201521 0.192005 0.126670 0.819456 0.107531 0.010739 0.062273 0.011243 0.009443 0.956300 0.023014 0.015484 0.019439 0.923764 0.041313 0.316636 0.023732 0.564670 0.094962 0.307337 0.616380 0.038055 0.038228 0.217325 0.179996 0.249403 0.353277 0.173063 0.440836 0.169680 0.216421 Consensus sequence: VHMDGGACVAGGRCDH Alignment: DDGMCCTBGTCCHYHV TGAMCTTTGMMCYT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Original Motif Reverse Complement Forward 2 14 0.049545 Species: Mus musculus Original motif 0.427843 0.231210 0.119424 0.221523 0.196506 0.239531 0.304906 0.259057 0.302488 0.156922 0.290190 0.250401 0.433872 0.149126 0.196496 0.220506 0.258426 0.076511 0.475100 0.189963 0.841714 0.046453 0.099915 0.011918 0.983853 0.001612 0.001362 0.013174 0.003460 0.982032 0.005728 0.008780 0.989743 0.002253 0.002020 0.005984 0.990761 0.003397 0.002843 0.003000 0.770864 0.003540 0.001549 0.224048 0.235342 0.002598 0.757383 0.004677 0.371426 0.089574 0.529959 0.009040 0.480804 0.196949 0.240413 0.081833 0.187158 0.355102 0.216599 0.241142 0.248006 0.232182 0.157452 0.362360 0.403367 0.177684 0.164649 0.254300 Consensus sequence: HBDDDAACAAAGRVBHH Reverse complement motif 0.254300 0.177684 0.164649 0.403367 0.362360 0.232182 0.157452 0.248006 0.187158 0.216599 0.355102 0.241142 0.081833 0.196949 0.240413 0.480804 0.371426 0.529959 0.089574 0.009040 0.235342 0.757383 0.002598 0.004677 0.224048 0.003540 0.001549 0.770864 0.003000 0.003397 0.002843 0.990761 0.005984 0.002253 0.002020 0.989743 0.003460 0.005728 0.982032 0.008780 0.013174 0.001612 0.001362 0.983853 0.011918 0.046453 0.099915 0.841714 0.258426 0.475100 0.076511 0.189963 0.220506 0.149126 0.196496 0.433872 0.250401 0.156922 0.290190 0.302488 0.196506 0.304906 0.239531 0.259057 0.221523 0.231210 0.119424 0.427843 Consensus sequence: HHBBMCTTTGTTHDDBH Alignment: HHBBMCTTTGTTHDDBH -TGAMCTTTGMMCYT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Original Motif Reverse Complement Backward 3 14 0.049903 Species: Mus musculus Original motif 0.351812 0.238467 0.143954 0.265768 0.195246 0.235838 0.281473 0.287443 0.349478 0.172616 0.210739 0.267167 0.484061 0.110438 0.173131 0.232370 0.276692 0.070713 0.479604 0.172991 0.859124 0.044167 0.083951 0.012758 0.975608 0.002029 0.002285 0.020079 0.006422 0.978485 0.007124 0.007969 0.987489 0.003025 0.002868 0.006617 0.987739 0.005463 0.002730 0.004067 0.693013 0.004067 0.002445 0.300475 0.189100 0.003677 0.801408 0.005814 0.352090 0.072517 0.567737 0.007656 0.542316 0.176545 0.192768 0.088371 0.196382 0.304176 0.205985 0.293457 0.289415 0.201358 0.182937 0.326290 0.385801 0.216362 0.152363 0.245475 Consensus sequence: HBDDRAACAAAGRABHH Reverse complement motif 0.245475 0.216362 0.152363 0.385801 0.326290 0.201358 0.182937 0.289415 0.196382 0.205985 0.304176 0.293457 0.088371 0.176545 0.192768 0.542316 0.352090 0.567737 0.072517 0.007656 0.189100 0.801408 0.003677 0.005814 0.300475 0.004067 0.002445 0.693013 0.004067 0.005463 0.002730 0.987739 0.006617 0.003025 0.002868 0.987489 0.006422 0.007124 0.978485 0.007969 0.020079 0.002029 0.002285 0.975608 0.012758 0.044167 0.083951 0.859124 0.276692 0.479604 0.070713 0.172991 0.232370 0.110438 0.173131 0.484061 0.267167 0.172616 0.210739 0.349478 0.287443 0.235838 0.281473 0.195246 0.265768 0.238467 0.143954 0.351812 Consensus sequence: HHBTMCTTTGTTMDDVH Alignment: HHBTMCTTTGTTMDDVH -TGAMCTTTGMMCYT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00023 Sox30_primary Original Motif Original Motif Forward 3 14 0.051153 Species: Mus musculus Original motif 0.372432 0.102933 0.322145 0.202491 0.328072 0.182071 0.157347 0.332510 0.289417 0.084511 0.292873 0.333198 0.157571 0.227851 0.441662 0.172917 0.716832 0.049010 0.201411 0.032747 0.957368 0.003162 0.004402 0.035068 0.003907 0.862678 0.009407 0.124008 0.977231 0.007658 0.004263 0.010847 0.976481 0.004510 0.015225 0.003784 0.067568 0.004353 0.005071 0.923008 0.158205 0.108442 0.467023 0.266330 0.334549 0.091557 0.510241 0.063654 0.456431 0.182602 0.150234 0.210732 0.387485 0.241062 0.151504 0.219950 0.188387 0.269857 0.176514 0.365242 0.175680 0.243984 0.165833 0.414502 Consensus sequence: DHDBAACAATDRHHHH Reverse complement motif 0.414502 0.243984 0.165833 0.175680 0.365242 0.269857 0.176514 0.188387 0.219950 0.241062 0.151504 0.387485 0.210732 0.182602 0.150234 0.456431 0.334549 0.510241 0.091557 0.063654 0.158205 0.467023 0.108442 0.266330 0.923008 0.004353 0.005071 0.067568 0.003784 0.004510 0.015225 0.976481 0.010847 0.007658 0.004263 0.977231 0.003907 0.009407 0.862678 0.124008 0.035068 0.003162 0.004402 0.957368 0.032747 0.049010 0.201411 0.716832 0.157571 0.441662 0.227851 0.172917 0.333198 0.084511 0.292873 0.289417 0.332510 0.182071 0.157347 0.328072 0.202491 0.102933 0.322145 0.372432 Consensus sequence: HHHHMHATTGTTBDHD Alignment: DHDBAACAATDRHHHH --TGAMCTTTGMMCYT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_secondary Reverse Complement Reverse Complement Backward 1 14 0.051697 Species: Mus musculus Original motif 0.198427 0.243196 0.159241 0.399136 0.267754 0.388187 0.116811 0.227248 0.448284 0.056403 0.414623 0.080691 0.031469 0.826323 0.055436 0.086772 0.035527 0.756642 0.022985 0.184845 0.127338 0.316078 0.155806 0.400778 0.135021 0.313650 0.287760 0.263570 0.418892 0.082297 0.068352 0.430460 0.201062 0.044735 0.711358 0.042845 0.038934 0.022320 0.903763 0.034982 0.201790 0.065554 0.460526 0.272130 0.006890 0.786923 0.061853 0.144334 0.460666 0.103658 0.196452 0.239224 0.092272 0.204611 0.390375 0.312742 Consensus sequence: HHRCCBBWGGDCDB Reverse complement motif 0.092272 0.390375 0.204611 0.312742 0.239224 0.103658 0.196452 0.460666 0.006890 0.061853 0.786923 0.144334 0.201790 0.460526 0.065554 0.272130 0.038934 0.903763 0.022320 0.034982 0.201062 0.711358 0.044735 0.042845 0.430460 0.082297 0.068352 0.418892 0.135021 0.287760 0.313650 0.263570 0.400778 0.316078 0.155806 0.127338 0.035527 0.022985 0.756642 0.184845 0.031469 0.055436 0.826323 0.086772 0.080691 0.056403 0.414623 0.448284 0.267754 0.116811 0.388187 0.227248 0.399136 0.243196 0.159241 0.198427 Consensus sequence: BDGHCCWBVGGKDH Alignment: BDGHCCWBVGGKDH AKGYYCAAAGRTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 39 Motif name: MZF1_1-4 Original motif 0.150000 0.250000 0.200000 0.400000 0.000000 0.000000 0.950000 0.050000 0.100000 0.000000 0.900000 0.000000 0.000000 0.000000 0.950000 0.050000 0.000000 0.000000 1.000000 0.000000 0.900000 0.000000 0.100000 0.000000 Consensus sequence: BGGGGA Reserve complement motif 0.000000 0.000000 0.100000 0.900000 0.000000 1.000000 0.000000 0.000000 0.000000 0.950000 0.000000 0.050000 0.100000 0.900000 0.000000 0.000000 0.000000 0.950000 0.000000 0.050000 0.400000 0.250000 0.200000 0.150000 Consensus sequence: TCCCCV ************************************************************************ Best Matches for Motif ID 39 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00176 Crx Reverse Complement Reverse Complement Backward 4 6 0.000000 Species: Mus musculus Original motif 0.090571 0.470784 0.132533 0.306112 0.097553 0.215274 0.380528 0.306645 0.329642 0.096126 0.139164 0.435068 0.256197 0.120190 0.173105 0.450508 0.092558 0.110352 0.731426 0.065664 0.091713 0.267719 0.595502 0.045066 0.043905 0.002927 0.952004 0.001165 0.003160 0.002104 0.990877 0.003859 0.959206 0.038974 0.000375 0.001444 0.003080 0.004243 0.000706 0.991971 0.015557 0.002685 0.000597 0.981161 0.979685 0.000442 0.002645 0.017227 0.372459 0.028457 0.403587 0.195497 0.092995 0.682203 0.100835 0.123967 0.103130 0.522168 0.231711 0.142992 0.194271 0.158404 0.247437 0.399888 Consensus sequence: YBWDGGGGATTARCCD Reverse complement motif 0.399888 0.158404 0.247437 0.194271 0.103130 0.231711 0.522168 0.142992 0.092995 0.100835 0.682203 0.123967 0.372459 0.403587 0.028457 0.195497 0.017227 0.000442 0.002645 0.979685 0.981161 0.002685 0.000597 0.015557 0.991971 0.004243 0.000706 0.003080 0.001444 0.038974 0.000375 0.959206 0.003160 0.990877 0.002104 0.003859 0.043905 0.952004 0.002927 0.001165 0.091713 0.595502 0.267719 0.045066 0.092558 0.731426 0.110352 0.065664 0.450508 0.120190 0.173105 0.256197 0.435068 0.096126 0.139164 0.329642 0.097553 0.380528 0.215274 0.306645 0.090571 0.132533 0.470784 0.306112 Consensus sequence: DGGMTAATCCCCDWBK Alignment: DGGMTAATCCCCDWBK -------TCCCCV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00265 Pitx3 Reverse Complement Reverse Complement Backward 2 6 0.001933 Species: Mus musculus Original motif 0.376317 0.228810 0.324927 0.069946 0.194464 0.131695 0.538949 0.134892 0.066391 0.226063 0.645457 0.062089 0.174103 0.030838 0.758315 0.036743 0.018838 0.001515 0.979039 0.000608 0.002099 0.002488 0.992192 0.003220 0.958051 0.040431 0.000340 0.001178 0.002126 0.007833 0.000559 0.989482 0.009085 0.005231 0.000358 0.985326 0.975248 0.000371 0.001696 0.022685 0.177679 0.041353 0.541741 0.239227 0.054770 0.772535 0.116688 0.056007 0.157041 0.155159 0.224874 0.462926 0.343501 0.137361 0.357922 0.161216 0.153495 0.344871 0.332684 0.168951 0.125949 0.548089 0.196494 0.129468 Consensus sequence: VGGGGGATTAGCDDBC Reverse complement motif 0.125949 0.196494 0.548089 0.129468 0.153495 0.332684 0.344871 0.168951 0.343501 0.357922 0.137361 0.161216 0.462926 0.155159 0.224874 0.157041 0.054770 0.116688 0.772535 0.056007 0.177679 0.541741 0.041353 0.239227 0.022685 0.000371 0.001696 0.975248 0.985326 0.005231 0.000358 0.009085 0.989482 0.007833 0.000559 0.002126 0.001178 0.040431 0.000340 0.958051 0.002099 0.992192 0.002488 0.003220 0.018838 0.979039 0.001515 0.000608 0.174103 0.758315 0.030838 0.036743 0.066391 0.645457 0.226063 0.062089 0.194464 0.538949 0.131695 0.134892 0.069946 0.228810 0.324927 0.376317 Consensus sequence: GBHDGCTAATCCCCCB Alignment: GBHDGCTAATCCCCCB ---------TCCCCV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00239 Obox2 Reverse Complement Reverse Complement Forward 9 6 0.002847 Species: Mus musculus Original motif 0.293849 0.125144 0.142440 0.438568 0.122280 0.144634 0.408124 0.324963 0.448856 0.147837 0.312347 0.090959 0.152801 0.059872 0.649129 0.138198 0.187720 0.040843 0.725481 0.045956 0.070379 0.021109 0.864530 0.043982 0.063765 0.006819 0.915928 0.013488 0.018370 0.002669 0.948065 0.030896 0.972042 0.020308 0.001317 0.006333 0.009162 0.002535 0.005655 0.982649 0.024250 0.007414 0.002871 0.965464 0.934913 0.002383 0.012220 0.050484 0.694401 0.019404 0.079194 0.207001 0.290944 0.524953 0.061736 0.122367 0.258089 0.064339 0.154268 0.523303 0.510991 0.233652 0.092796 0.162561 0.221195 0.238061 0.076237 0.464507 Consensus sequence: DBRGGGGGATTAAMTAH Reverse complement motif 0.464507 0.238061 0.076237 0.221195 0.162561 0.233652 0.092796 0.510991 0.523303 0.064339 0.154268 0.258089 0.290944 0.061736 0.524953 0.122367 0.207001 0.019404 0.079194 0.694401 0.050484 0.002383 0.012220 0.934913 0.965464 0.007414 0.002871 0.024250 0.982649 0.002535 0.005655 0.009162 0.006333 0.020308 0.001317 0.972042 0.018370 0.948065 0.002669 0.030896 0.063765 0.915928 0.006819 0.013488 0.070379 0.864530 0.021109 0.043982 0.187720 0.725481 0.040843 0.045956 0.152801 0.649129 0.059872 0.138198 0.090959 0.147837 0.312347 0.448856 0.122280 0.408124 0.144634 0.324963 0.438568 0.125144 0.142440 0.293849 Consensus sequence: HTARTTAATCCCCCKBD Alignment: HTARTTAATCCCCCKBD --------TCCCCV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00216 Obox1 Original Motif Original Motif Backward 9 6 0.004620 Species: Mus musculus Original motif 0.239477 0.131084 0.243507 0.385932 0.217543 0.106254 0.206114 0.470089 0.647326 0.113122 0.157767 0.081785 0.447787 0.111541 0.372093 0.068580 0.248541 0.017787 0.686924 0.046748 0.088770 0.008796 0.883034 0.019400 0.049663 0.003287 0.945325 0.001725 0.003569 0.000420 0.960584 0.035426 0.967192 0.029883 0.000248 0.002677 0.001721 0.005927 0.001063 0.991288 0.008389 0.011678 0.000280 0.979653 0.946957 0.000663 0.002329 0.050052 0.711018 0.017942 0.052601 0.218440 0.234125 0.619719 0.073871 0.072285 0.255026 0.148239 0.159856 0.436879 0.448611 0.200869 0.092123 0.258397 0.182337 0.333505 0.182092 0.302066 Consensus sequence: DDARGGGGATTAACDHH Reverse complement motif 0.182337 0.182092 0.333505 0.302066 0.258397 0.200869 0.092123 0.448611 0.436879 0.148239 0.159856 0.255026 0.234125 0.073871 0.619719 0.072285 0.218440 0.017942 0.052601 0.711018 0.050052 0.000663 0.002329 0.946957 0.979653 0.011678 0.000280 0.008389 0.991288 0.005927 0.001063 0.001721 0.002677 0.029883 0.000248 0.967192 0.003569 0.960584 0.000420 0.035426 0.049663 0.945325 0.003287 0.001725 0.088770 0.883034 0.008796 0.019400 0.248541 0.686924 0.017787 0.046748 0.068580 0.111541 0.372093 0.447787 0.081785 0.113122 0.157767 0.647326 0.470089 0.106254 0.206114 0.217543 0.385932 0.131084 0.243507 0.239477 Consensus sequence: DHDGTTAATCCCCKTDD Alignment: DDARGGGGATTAACDHH ---BGGGGA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00160 Obox3 Reverse Complement Reverse Complement Forward 9 6 0.006418 Species: Mus musculus Original motif 0.265987 0.173377 0.153926 0.406710 0.129561 0.268972 0.350646 0.250821 0.342885 0.208848 0.334291 0.113975 0.153240 0.164565 0.582521 0.099674 0.258413 0.031726 0.629457 0.080404 0.111288 0.035159 0.768619 0.084935 0.083021 0.004060 0.905853 0.007066 0.012108 0.002693 0.970145 0.015055 0.982328 0.009671 0.001699 0.006303 0.003572 0.002819 0.006020 0.987589 0.012066 0.006455 0.003574 0.977906 0.954560 0.001995 0.009190 0.034255 0.716184 0.015547 0.126758 0.141512 0.137277 0.673851 0.087215 0.101657 0.282699 0.056894 0.162378 0.498029 0.432159 0.290288 0.109507 0.168046 0.260601 0.267351 0.069676 0.402372 Consensus sequence: HBVGGGGGATTAACWHH Reverse complement motif 0.402372 0.267351 0.069676 0.260601 0.168046 0.290288 0.109507 0.432159 0.498029 0.056894 0.162378 0.282699 0.137277 0.087215 0.673851 0.101657 0.141512 0.015547 0.126758 0.716184 0.034255 0.001995 0.009190 0.954560 0.977906 0.006455 0.003574 0.012066 0.987589 0.002819 0.006020 0.003572 0.006303 0.009671 0.001699 0.982328 0.012108 0.970145 0.002693 0.015055 0.083021 0.905853 0.004060 0.007066 0.111288 0.768619 0.035159 0.084935 0.258413 0.629457 0.031726 0.080404 0.153240 0.582521 0.164565 0.099674 0.113975 0.208848 0.334291 0.342885 0.129561 0.350646 0.268972 0.250821 0.406710 0.173377 0.153926 0.265987 Consensus sequence: HHWGTTAATCCCCCBBH Alignment: HHWGTTAATCCCCCBBH --------TCCCCV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00208 Obox5_2284.1 Original Motif Original Motif Backward 10 6 0.011026 Species: Mus musculus Original motif 0.281264 0.188968 0.136609 0.393160 0.344028 0.038266 0.328422 0.289284 0.266627 0.234290 0.328022 0.171062 0.393172 0.142839 0.379282 0.084706 0.110940 0.063210 0.811347 0.014502 0.089051 0.002920 0.905749 0.002280 0.008411 0.000554 0.984833 0.006202 0.987567 0.004995 0.000896 0.006542 0.003972 0.001261 0.003058 0.991709 0.007568 0.004773 0.000491 0.987168 0.974587 0.000828 0.001598 0.022987 0.799844 0.004926 0.020978 0.174252 0.383707 0.178162 0.082155 0.355976 0.074343 0.081369 0.030820 0.813467 0.182973 0.309007 0.180900 0.327119 0.274045 0.191530 0.121366 0.413060 0.286677 0.377630 0.141803 0.193890 Consensus sequence: HDVRGGGATTAAHTHHH Reverse complement motif 0.286677 0.141803 0.377630 0.193890 0.413060 0.191530 0.121366 0.274045 0.327119 0.309007 0.180900 0.182973 0.813467 0.081369 0.030820 0.074343 0.355976 0.178162 0.082155 0.383707 0.174252 0.004926 0.020978 0.799844 0.022987 0.000828 0.001598 0.974587 0.987168 0.004773 0.000491 0.007568 0.991709 0.001261 0.003058 0.003972 0.006542 0.004995 0.000896 0.987567 0.008411 0.984833 0.000554 0.006202 0.089051 0.905749 0.002920 0.002280 0.110940 0.811347 0.063210 0.014502 0.084706 0.142839 0.379282 0.393172 0.266627 0.328022 0.234290 0.171062 0.289284 0.038266 0.328422 0.344028 0.393160 0.188968 0.136609 0.281264 Consensus sequence: DHHAHTTAATCCCKVDH Alignment: HDVRGGGATTAAHTHHH --BGGGGA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00143 Dobox5 Original Motif Original Motif Forward 3 6 0.013657 Species: Mus musculus Original motif 0.318006 0.161296 0.325541 0.195157 0.313601 0.083023 0.377870 0.225506 0.298208 0.282086 0.190012 0.229693 0.484557 0.174619 0.249175 0.091650 0.178941 0.025979 0.771418 0.023662 0.048080 0.001644 0.948807 0.001469 0.008069 0.000908 0.985703 0.005321 0.964141 0.032554 0.000312 0.002993 0.003637 0.002849 0.001283 0.992231 0.006297 0.007784 0.000276 0.985643 0.930090 0.000696 0.000899 0.068314 0.815261 0.006992 0.154272 0.023474 0.057969 0.177555 0.096246 0.668231 0.236979 0.285921 0.057746 0.419354 0.347812 0.200757 0.249827 0.201604 0.239503 0.153155 0.096118 0.511224 0.234875 0.401818 0.136916 0.226391 Consensus sequence: DDHVGGGATTAATHDTH Reverse complement motif 0.234875 0.136916 0.401818 0.226391 0.511224 0.153155 0.096118 0.239503 0.201604 0.200757 0.249827 0.347812 0.419354 0.285921 0.057746 0.236979 0.668231 0.177555 0.096246 0.057969 0.023474 0.006992 0.154272 0.815261 0.068314 0.000696 0.000899 0.930090 0.985643 0.007784 0.000276 0.006297 0.992231 0.002849 0.001283 0.003637 0.002993 0.032554 0.000312 0.964141 0.008069 0.985703 0.000908 0.005321 0.048080 0.948807 0.001644 0.001469 0.178941 0.771418 0.025979 0.023662 0.091650 0.174619 0.249175 0.484557 0.229693 0.282086 0.190012 0.298208 0.313601 0.377870 0.083023 0.225506 0.318006 0.325541 0.161296 0.195157 Consensus sequence: DADHATTAATCCCBHHH Alignment: DDHVGGGATTAATHDTH --BGGGGA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00229 Otx1 Original Motif Original Motif Backward 10 6 0.013894 Species: Mus musculus Original motif 0.300610 0.149999 0.303810 0.245581 0.194444 0.095366 0.487289 0.222901 0.366838 0.110418 0.162922 0.359822 0.426793 0.049280 0.474292 0.049636 0.176031 0.195172 0.608443 0.020354 0.077179 0.003862 0.916244 0.002715 0.006954 0.001526 0.985903 0.005616 0.953016 0.043074 0.000504 0.003406 0.001743 0.004547 0.001783 0.991927 0.012882 0.003454 0.000402 0.983262 0.939084 0.000404 0.001874 0.058638 0.687439 0.025328 0.143515 0.143718 0.117461 0.128987 0.097084 0.656468 0.291905 0.125407 0.094129 0.488559 0.241296 0.237850 0.201291 0.319563 0.317041 0.222787 0.160309 0.299862 0.187481 0.261819 0.240698 0.310001 Consensus sequence: DDDRGGGATTAATWHHB Reverse complement motif 0.310001 0.261819 0.240698 0.187481 0.299862 0.222787 0.160309 0.317041 0.319563 0.237850 0.201291 0.241296 0.488559 0.125407 0.094129 0.291905 0.656468 0.128987 0.097084 0.117461 0.143718 0.025328 0.143515 0.687439 0.058638 0.000404 0.001874 0.939084 0.983262 0.003454 0.000402 0.012882 0.991927 0.004547 0.001783 0.001743 0.003406 0.043074 0.000504 0.953016 0.006954 0.985903 0.001526 0.005616 0.077179 0.916244 0.003862 0.002715 0.176031 0.608443 0.195172 0.020354 0.426793 0.474292 0.049280 0.049636 0.359822 0.110418 0.162922 0.366838 0.194444 0.487289 0.095366 0.222901 0.300610 0.303810 0.149999 0.245581 Consensus sequence: VHHWATTAATCCCMDHH Alignment: DDDRGGGATTAATWHHB --BGGGGA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00267 Otx2 Original Motif Original Motif Backward 10 6 0.016387 Species: Mus musculus Original motif 0.228258 0.209722 0.271345 0.290675 0.291157 0.069361 0.377485 0.261996 0.287153 0.152094 0.222957 0.337796 0.483727 0.152072 0.310290 0.053911 0.204144 0.113048 0.667872 0.014936 0.075520 0.006026 0.914157 0.004298 0.014517 0.001438 0.974113 0.009931 0.947371 0.046288 0.000447 0.005895 0.005062 0.002217 0.001684 0.991037 0.012926 0.004277 0.000429 0.982368 0.924965 0.000604 0.001421 0.073010 0.746193 0.020984 0.124464 0.108360 0.111140 0.150400 0.115855 0.622606 0.195298 0.342901 0.084437 0.377364 0.295892 0.125170 0.317047 0.261892 0.189707 0.172624 0.206879 0.430790 0.206004 0.451765 0.136227 0.206004 Consensus sequence: DDDRGGGATTAATHDDH Reverse complement motif 0.206004 0.136227 0.451765 0.206004 0.430790 0.172624 0.206879 0.189707 0.295892 0.317047 0.125170 0.261892 0.377364 0.342901 0.084437 0.195298 0.622606 0.150400 0.115855 0.111140 0.108360 0.020984 0.124464 0.746193 0.073010 0.000604 0.001421 0.924965 0.982368 0.004277 0.000429 0.012926 0.991037 0.002217 0.001684 0.005062 0.005895 0.046288 0.000447 0.947371 0.014517 0.974113 0.001438 0.009931 0.075520 0.914157 0.006026 0.004298 0.204144 0.667872 0.113048 0.014936 0.053911 0.152072 0.310290 0.483727 0.337796 0.152094 0.222957 0.287153 0.291157 0.377485 0.069361 0.261996 0.290675 0.209722 0.271345 0.228258 Consensus sequence: DDHHATTAATCCCKDHD Alignment: DDDRGGGATTAATHDDH --BGGGGA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00153 Pitx1 Original Motif Original Motif Backward 9 6 0.016495 Species: Mus musculus Original motif 0.207371 0.246323 0.166934 0.379372 0.115831 0.171040 0.352289 0.360841 0.435857 0.190325 0.290547 0.083272 0.281154 0.147141 0.422767 0.148938 0.453996 0.050465 0.389240 0.106298 0.187631 0.043211 0.734974 0.034185 0.042788 0.001867 0.954016 0.001329 0.006032 0.001055 0.986493 0.006420 0.955163 0.042114 0.000355 0.002368 0.003755 0.004760 0.000754 0.990731 0.005515 0.009073 0.000267 0.985144 0.913280 0.000712 0.001035 0.084973 0.721584 0.024188 0.198396 0.055833 0.334868 0.490003 0.058252 0.116877 0.457303 0.071620 0.241947 0.229130 0.478355 0.207860 0.143752 0.170032 0.256961 0.248882 0.203598 0.290559 Consensus sequence: HBVDRGGGATTAAMDHH Reverse complement motif 0.290559 0.248882 0.203598 0.256961 0.170032 0.207860 0.143752 0.478355 0.229130 0.071620 0.241947 0.457303 0.334868 0.058252 0.490003 0.116877 0.055833 0.024188 0.198396 0.721584 0.084973 0.000712 0.001035 0.913280 0.985144 0.009073 0.000267 0.005515 0.990731 0.004760 0.000754 0.003755 0.002368 0.042114 0.000355 0.955163 0.006032 0.986493 0.001055 0.006420 0.042788 0.954016 0.001867 0.001329 0.187631 0.734974 0.043211 0.034185 0.106298 0.050465 0.389240 0.453996 0.281154 0.422767 0.147141 0.148938 0.083272 0.190325 0.290547 0.435857 0.360841 0.171040 0.352289 0.115831 0.379372 0.246323 0.166934 0.207371 Consensus sequence: HHDRTTAATCCCKHBVH Alignment: HBVDRGGGATTAAMDHH ---BGGGGA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 40 Motif name: Ar Original motif 0.375000 0.291667 0.083333 0.250000 0.375000 0.083333 0.125000 0.416667 0.458333 0.125000 0.125000 0.291667 0.666667 0.041667 0.291667 0.000000 0.000000 0.000000 0.916667 0.083333 0.500000 0.250000 0.041667 0.208333 0.875000 0.083333 0.000000 0.041667 0.000000 1.000000 0.000000 0.000000 0.625000 0.000000 0.333333 0.041667 0.166667 0.375000 0.083333 0.375000 0.208333 0.458333 0.083333 0.250000 0.250000 0.375000 0.375000 0.000000 0.125000 0.208333 0.041667 0.625000 0.000000 0.000000 1.000000 0.000000 0.166667 0.000000 0.000000 0.833333 0.458333 0.208333 0.041667 0.291667 0.041667 0.916667 0.041667 0.000000 0.125000 0.666667 0.041667 0.166667 0.250000 0.291667 0.208333 0.250000 0.250000 0.208333 0.375000 0.166667 0.416667 0.458333 0.000000 0.125000 0.208333 0.458333 0.250000 0.083333 Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reserve complement motif 0.208333 0.250000 0.458333 0.083333 0.416667 0.000000 0.458333 0.125000 0.250000 0.375000 0.208333 0.166667 0.250000 0.208333 0.291667 0.250000 0.125000 0.041667 0.666667 0.166667 0.041667 0.041667 0.916667 0.000000 0.291667 0.208333 0.041667 0.458333 0.833333 0.000000 0.000000 0.166667 0.000000 1.000000 0.000000 0.000000 0.625000 0.208333 0.041667 0.125000 0.250000 0.375000 0.375000 0.000000 0.208333 0.083333 0.458333 0.250000 0.166667 0.083333 0.375000 0.375000 0.041667 0.000000 0.333333 0.625000 0.000000 0.000000 1.000000 0.000000 0.041667 0.083333 0.000000 0.875000 0.208333 0.250000 0.041667 0.500000 0.000000 0.916667 0.000000 0.083333 0.000000 0.041667 0.291667 0.666667 0.291667 0.125000 0.125000 0.458333 0.416667 0.083333 0.125000 0.375000 0.250000 0.291667 0.083333 0.375000 Consensus sequence: VRVDGGHACAVDDKGTHCTDWH ************************************************************************ Best Matches for Motif ID 40 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondary Original Motif Original Motif Backward 1 22 0.067699 Species: Mus musculus Original motif 0.177641 0.319872 0.115137 0.387350 0.136644 0.182137 0.205873 0.475347 0.254263 0.244280 0.165207 0.336250 0.240415 0.207557 0.237497 0.314530 0.271041 0.214702 0.364395 0.149863 0.095475 0.320104 0.191738 0.392682 0.500902 0.142722 0.026556 0.329820 0.051221 0.023698 0.897245 0.027836 0.922410 0.027509 0.024058 0.026023 0.030735 0.070903 0.024248 0.874114 0.242120 0.231992 0.225143 0.300745 0.106956 0.220471 0.283490 0.389083 0.152079 0.165830 0.135066 0.547025 0.839205 0.051581 0.060119 0.049095 0.041204 0.069147 0.070830 0.818819 0.051861 0.848177 0.027599 0.072363 0.383793 0.016807 0.397470 0.201931 0.381899 0.215846 0.255908 0.146347 0.094792 0.358651 0.280905 0.265652 0.296132 0.181545 0.178433 0.343890 0.301997 0.254722 0.108566 0.334714 0.349481 0.270693 0.137507 0.242319 Consensus sequence: HBHDVBWGATHBTATCRVBHHH Reverse complement motif 0.242319 0.270693 0.137507 0.349481 0.334714 0.254722 0.108566 0.301997 0.343890 0.181545 0.178433 0.296132 0.094792 0.280905 0.358651 0.265652 0.146347 0.215846 0.255908 0.381899 0.383793 0.397470 0.016807 0.201931 0.051861 0.027599 0.848177 0.072363 0.818819 0.069147 0.070830 0.041204 0.049095 0.051581 0.060119 0.839205 0.547025 0.165830 0.135066 0.152079 0.389083 0.220471 0.283490 0.106956 0.300745 0.231992 0.225143 0.242120 0.874114 0.070903 0.024248 0.030735 0.026023 0.027509 0.024058 0.922410 0.051221 0.897245 0.023698 0.027836 0.329820 0.142722 0.026556 0.500902 0.392682 0.320104 0.191738 0.095475 0.271041 0.364395 0.214702 0.149863 0.314530 0.207557 0.237497 0.240415 0.336250 0.244280 0.165207 0.254263 0.475347 0.182137 0.205873 0.136644 0.387350 0.319872 0.115137 0.177641 Consensus sequence: HHHBBMGATAVHATCWVVDHVH Alignment: HBHDVBWGATHBTATCRVBHHH HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Reverse Complement Reverse Complement Backward 1 22 0.069215 Species: Mus musculus Original motif 0.067627 0.131333 0.654425 0.146615 0.156488 0.114442 0.145630 0.583441 0.206450 0.265630 0.358017 0.169903 0.090729 0.460713 0.274712 0.173847 0.285994 0.099998 0.154485 0.459523 0.635908 0.184787 0.072982 0.106323 0.748421 0.039204 0.092605 0.119769 0.081342 0.061327 0.044532 0.812799 0.143120 0.043879 0.024216 0.788785 0.247544 0.092102 0.621453 0.038901 0.295531 0.036295 0.027594 0.640580 0.194561 0.305468 0.339916 0.160055 0.175038 0.193568 0.101212 0.530182 0.145226 0.167488 0.559871 0.127415 0.271501 0.237429 0.206701 0.284369 0.216834 0.109191 0.569605 0.104370 0.182624 0.177160 0.300475 0.339742 0.331737 0.198645 0.265137 0.204482 0.230155 0.359365 0.183450 0.227029 0.056581 0.067297 0.463052 0.413070 0.198891 0.324626 0.304424 0.172059 0.181968 0.287547 0.202419 0.328066 Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Reverse complement motif 0.328066 0.287547 0.202419 0.181968 0.198891 0.304424 0.324626 0.172059 0.056581 0.463052 0.067297 0.413070 0.230155 0.183450 0.359365 0.227029 0.204482 0.198645 0.265137 0.331737 0.339742 0.177160 0.300475 0.182624 0.216834 0.569605 0.109191 0.104370 0.284369 0.237429 0.206701 0.271501 0.145226 0.559871 0.167488 0.127415 0.530182 0.193568 0.101212 0.175038 0.194561 0.339916 0.305468 0.160055 0.640580 0.036295 0.027594 0.295531 0.247544 0.621453 0.092102 0.038901 0.788785 0.043879 0.024216 0.143120 0.812799 0.061327 0.044532 0.081342 0.119769 0.039204 0.092605 0.748421 0.106323 0.184787 0.072982 0.635908 0.459523 0.099998 0.154485 0.285994 0.090729 0.274712 0.460713 0.173847 0.206450 0.358017 0.265630 0.169903 0.583441 0.114442 0.145630 0.156488 0.067627 0.654425 0.131333 0.146615 Consensus sequence: VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Reverse Complement Reverse Complement Forward 1 22 0.069561 Species: Mus musculus Original motif 0.347837 0.112349 0.403713 0.136102 0.298329 0.175329 0.324534 0.201809 0.421791 0.222553 0.113615 0.242041 0.387506 0.130670 0.161435 0.320389 0.197183 0.244864 0.304611 0.253342 0.345884 0.188786 0.278290 0.187041 0.228203 0.142148 0.408269 0.221381 0.037126 0.006772 0.231775 0.724328 0.055214 0.942800 0.001192 0.000794 0.974119 0.004466 0.015535 0.005880 0.000300 0.958145 0.007498 0.034056 0.034056 0.007498 0.958145 0.000300 0.005880 0.015535 0.004466 0.974119 0.000794 0.001192 0.942800 0.055214 0.724328 0.231775 0.006772 0.037126 0.015720 0.466476 0.315208 0.202596 0.173670 0.355170 0.210710 0.260449 0.407419 0.261539 0.134430 0.196612 0.351478 0.209698 0.262426 0.176399 0.207869 0.284582 0.198951 0.308598 0.434482 0.113724 0.184408 0.267386 0.211144 0.363745 0.173978 0.251133 Consensus sequence: RDHDBVDTCACGTGASBHVHDH Reverse complement motif 0.211144 0.173978 0.363745 0.251133 0.267386 0.113724 0.184408 0.434482 0.308598 0.284582 0.198951 0.207869 0.176399 0.209698 0.262426 0.351478 0.196612 0.261539 0.134430 0.407419 0.173670 0.210710 0.355170 0.260449 0.015720 0.315208 0.466476 0.202596 0.037126 0.231775 0.006772 0.724328 0.000794 0.942800 0.001192 0.055214 0.974119 0.015535 0.004466 0.005880 0.034056 0.958145 0.007498 0.000300 0.000300 0.007498 0.958145 0.034056 0.005880 0.004466 0.015535 0.974119 0.055214 0.001192 0.942800 0.000794 0.724328 0.006772 0.231775 0.037126 0.228203 0.408269 0.142148 0.221381 0.187041 0.188786 0.278290 0.345884 0.197183 0.304611 0.244864 0.253342 0.320389 0.130670 0.161435 0.387506 0.242041 0.222553 0.113615 0.421791 0.298329 0.324534 0.175329 0.201809 0.347837 0.403713 0.112349 0.136102 Consensus sequence: DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Original Motif Reverse Complement Backward 1 22 0.077135 Species: Mus musculus Original motif 0.120938 0.344851 0.124072 0.410138 0.220931 0.169844 0.422396 0.186829 0.127752 0.260812 0.103811 0.507625 0.140641 0.405473 0.287668 0.166218 0.296957 0.155579 0.301094 0.246370 0.219647 0.287193 0.154072 0.339087 0.049294 0.026059 0.121789 0.802859 0.520042 0.289284 0.173423 0.017251 0.049190 0.943472 0.004308 0.003030 0.902609 0.006767 0.074770 0.015854 0.003221 0.971329 0.005512 0.019937 0.019937 0.005512 0.971329 0.003221 0.015854 0.074770 0.006767 0.902609 0.003030 0.004308 0.943472 0.049190 0.003497 0.088920 0.685942 0.221641 0.802859 0.121789 0.026059 0.049294 0.334544 0.155170 0.275193 0.235092 0.275957 0.132104 0.454982 0.136957 0.134097 0.254352 0.422940 0.188611 0.396163 0.432784 0.051281 0.119772 0.276474 0.115627 0.419844 0.188056 0.160759 0.088061 0.649863 0.101318 0.203314 0.166595 0.106821 0.523270 Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Reverse complement motif 0.523270 0.166595 0.106821 0.203314 0.160759 0.649863 0.088061 0.101318 0.276474 0.419844 0.115627 0.188056 0.396163 0.051281 0.432784 0.119772 0.134097 0.422940 0.254352 0.188611 0.275957 0.454982 0.132104 0.136957 0.235092 0.155170 0.275193 0.334544 0.049294 0.121789 0.026059 0.802859 0.003497 0.685942 0.088920 0.221641 0.003030 0.943472 0.004308 0.049190 0.902609 0.074770 0.006767 0.015854 0.019937 0.971329 0.005512 0.003221 0.003221 0.005512 0.971329 0.019937 0.015854 0.006767 0.074770 0.902609 0.049190 0.004308 0.943472 0.003030 0.017251 0.289284 0.173423 0.520042 0.802859 0.026059 0.121789 0.049294 0.339087 0.287193 0.154072 0.219647 0.296957 0.301094 0.155579 0.246370 0.140641 0.287668 0.405473 0.166218 0.507625 0.260812 0.103811 0.127752 0.220931 0.422396 0.169844 0.186829 0.410138 0.344851 0.124072 0.120938 Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM Alignment: YDYBDHTMCACGTGGADDBMDGT -HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Reverse Complement Original Motif Forward 1 22 0.077205 Species: Mus musculus Original motif 0.456612 0.057181 0.078281 0.407926 0.460529 0.185506 0.083106 0.270859 0.445717 0.179510 0.239355 0.135417 0.116339 0.145186 0.275331 0.463144 0.239398 0.142078 0.480004 0.138520 0.355157 0.217877 0.284296 0.142670 0.318602 0.444835 0.153321 0.083243 0.609569 0.055866 0.280349 0.054216 0.062297 0.769824 0.027844 0.140035 0.151868 0.019245 0.803188 0.025699 0.011842 0.952534 0.017959 0.017665 0.017665 0.017959 0.952534 0.011842 0.025699 0.803188 0.019245 0.151868 0.140035 0.027844 0.769824 0.062297 0.054216 0.280349 0.055866 0.609569 0.013084 0.624655 0.177956 0.184305 0.287647 0.183527 0.295753 0.233074 0.042309 0.345931 0.198458 0.413301 0.338138 0.266033 0.045367 0.350462 0.302850 0.155320 0.074662 0.467168 0.240926 0.068901 0.283055 0.407118 0.409954 0.183157 0.154186 0.252704 Consensus sequence: WHVBVVMACGCGCGTCDYHWDH Reverse complement motif 0.252704 0.183157 0.154186 0.409954 0.407118 0.068901 0.283055 0.240926 0.467168 0.155320 0.074662 0.302850 0.350462 0.266033 0.045367 0.338138 0.413301 0.345931 0.198458 0.042309 0.287647 0.295753 0.183527 0.233074 0.013084 0.177956 0.624655 0.184305 0.609569 0.280349 0.055866 0.054216 0.140035 0.769824 0.027844 0.062297 0.025699 0.019245 0.803188 0.151868 0.017665 0.952534 0.017959 0.011842 0.011842 0.017959 0.952534 0.017665 0.151868 0.803188 0.019245 0.025699 0.062297 0.027844 0.769824 0.140035 0.054216 0.055866 0.280349 0.609569 0.318602 0.153321 0.444835 0.083243 0.142670 0.217877 0.284296 0.355157 0.239398 0.480004 0.142078 0.138520 0.463144 0.145186 0.275331 0.116339 0.135417 0.179510 0.239355 0.445717 0.270859 0.185506 0.083106 0.460529 0.407926 0.057181 0.078281 0.456612 Consensus sequence: HDWHMHGACGCGCGTRBVVBHW Alignment: WHVBVVMACGCGCGTCDYHWDH VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondary Reverse Complement Original Motif Forward 1 22 0.077433 Species: Mus musculus Original motif 0.477863 0.106306 0.184102 0.231729 0.304951 0.149020 0.361418 0.184612 0.548996 0.056128 0.348902 0.045974 0.385727 0.477782 0.086218 0.050273 0.409556 0.232265 0.173851 0.184328 0.174550 0.312880 0.307123 0.205448 0.850398 0.047204 0.041665 0.060734 0.141234 0.548534 0.142230 0.168002 0.059462 0.026354 0.892948 0.021236 0.053714 0.870297 0.028935 0.047055 0.086273 0.069147 0.805284 0.039296 0.033781 0.573881 0.034115 0.358223 0.035191 0.079663 0.824970 0.060176 0.051830 0.862631 0.019359 0.066180 0.178685 0.015738 0.762485 0.043092 0.058988 0.042615 0.017608 0.880789 0.202382 0.173360 0.284095 0.340163 0.098493 0.234651 0.506524 0.160333 0.109087 0.336204 0.250510 0.304198 0.130945 0.250843 0.177122 0.441090 0.353830 0.138838 0.162784 0.344548 0.114290 0.417163 0.160662 0.307885 Consensus sequence: DDRMHBACGCGYGCGTDGBBDB Reverse complement motif 0.114290 0.160662 0.417163 0.307885 0.344548 0.138838 0.162784 0.353830 0.441090 0.250843 0.177122 0.130945 0.109087 0.250510 0.336204 0.304198 0.098493 0.506524 0.234651 0.160333 0.340163 0.173360 0.284095 0.202382 0.880789 0.042615 0.017608 0.058988 0.178685 0.762485 0.015738 0.043092 0.051830 0.019359 0.862631 0.066180 0.035191 0.824970 0.079663 0.060176 0.033781 0.034115 0.573881 0.358223 0.086273 0.805284 0.069147 0.039296 0.053714 0.028935 0.870297 0.047055 0.059462 0.892948 0.026354 0.021236 0.141234 0.142230 0.548534 0.168002 0.060734 0.047204 0.041665 0.850398 0.174550 0.307123 0.312880 0.205448 0.184328 0.232265 0.173851 0.409556 0.385727 0.086218 0.477782 0.050273 0.045974 0.056128 0.348902 0.548996 0.304951 0.361418 0.149020 0.184612 0.231729 0.106306 0.184102 0.477863 Consensus sequence: BDVBCDACGCKCGCGTBHRKHD Alignment: BDVBCDACGCKCGCGTBHRKHD VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Original Motif Original Motif Backward 1 22 0.077690 Species: Mus musculus Original motif 0.168550 0.345968 0.396524 0.088958 0.038113 0.360882 0.114042 0.486963 0.349356 0.180599 0.051416 0.418629 0.258773 0.332518 0.244932 0.163778 0.371663 0.208591 0.263136 0.156609 0.225440 0.321741 0.175932 0.276887 0.100827 0.656850 0.018644 0.223679 0.494140 0.155427 0.327424 0.023009 0.105642 0.805846 0.027712 0.060800 0.065110 0.845072 0.058046 0.031772 0.649343 0.110180 0.180680 0.059797 0.064269 0.853604 0.066860 0.015268 0.437421 0.533797 0.016833 0.011948 0.121694 0.787708 0.016177 0.074421 0.625382 0.066925 0.266070 0.041623 0.117819 0.608153 0.165139 0.108889 0.145639 0.102001 0.604926 0.147434 0.521188 0.184986 0.064607 0.229219 0.180371 0.274237 0.096591 0.448801 0.071055 0.455813 0.332817 0.140315 0.084503 0.199982 0.448293 0.267222 0.389451 0.169545 0.155507 0.285497 0.424314 0.227621 0.101210 0.246855 Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Reverse complement motif 0.246855 0.227621 0.101210 0.424314 0.285497 0.169545 0.155507 0.389451 0.084503 0.448293 0.199982 0.267222 0.071055 0.332817 0.455813 0.140315 0.448801 0.274237 0.096591 0.180371 0.229219 0.184986 0.064607 0.521188 0.145639 0.604926 0.102001 0.147434 0.117819 0.165139 0.608153 0.108889 0.041623 0.066925 0.266070 0.625382 0.121694 0.016177 0.787708 0.074421 0.437421 0.016833 0.533797 0.011948 0.064269 0.066860 0.853604 0.015268 0.059797 0.110180 0.180680 0.649343 0.065110 0.058046 0.845072 0.031772 0.105642 0.027712 0.805846 0.060800 0.023009 0.155427 0.327424 0.494140 0.100827 0.018644 0.656850 0.223679 0.225440 0.175932 0.321741 0.276887 0.156609 0.208591 0.263136 0.371663 0.258773 0.244932 0.332518 0.163778 0.418629 0.180599 0.051416 0.349356 0.486963 0.360882 0.114042 0.038113 0.168550 0.396524 0.345968 0.088958 Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH -HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Original Motif Original Motif Forward 1 22 0.078798 Species: Mus musculus Original motif 0.399785 0.446658 0.111435 0.042122 0.535175 0.103991 0.089706 0.271128 0.078171 0.387987 0.375083 0.158759 0.309001 0.519142 0.070618 0.101239 0.201844 0.255818 0.323149 0.219190 0.534101 0.109845 0.235026 0.121028 0.656038 0.037473 0.261484 0.045006 0.315713 0.164290 0.471815 0.048182 0.651960 0.009412 0.328237 0.010391 0.937365 0.017313 0.007516 0.037807 0.019983 0.044238 0.012387 0.923392 0.061195 0.021485 0.881645 0.035675 0.017521 0.952998 0.013139 0.016342 0.254160 0.029735 0.493023 0.223082 0.239200 0.593324 0.114503 0.052973 0.610822 0.071539 0.099169 0.218470 0.166610 0.389712 0.204400 0.239278 0.227752 0.361626 0.178497 0.232125 0.537030 0.182466 0.026035 0.254470 0.235902 0.151006 0.043788 0.569304 0.081851 0.250397 0.590059 0.077693 0.340417 0.189613 0.272075 0.197895 Consensus sequence: MWSMBAARRATGCDCABHATGD Reverse complement motif 0.197895 0.189613 0.272075 0.340417 0.081851 0.590059 0.250397 0.077693 0.569304 0.151006 0.043788 0.235902 0.254470 0.182466 0.026035 0.537030 0.227752 0.178497 0.361626 0.232125 0.166610 0.204400 0.389712 0.239278 0.218470 0.071539 0.099169 0.610822 0.239200 0.114503 0.593324 0.052973 0.254160 0.493023 0.029735 0.223082 0.017521 0.013139 0.952998 0.016342 0.061195 0.881645 0.021485 0.035675 0.923392 0.044238 0.012387 0.019983 0.037807 0.017313 0.007516 0.937365 0.010391 0.009412 0.328237 0.651960 0.315713 0.471815 0.164290 0.048182 0.045006 0.037473 0.261484 0.656038 0.121028 0.109845 0.235026 0.534101 0.201844 0.323149 0.255818 0.219190 0.309001 0.070618 0.519142 0.101239 0.078171 0.375083 0.387987 0.158759 0.271128 0.103991 0.089706 0.535175 0.399785 0.111435 0.446658 0.042122 Consensus sequence: DCATDBTGHGCATKMTTBRSWR Alignment: MWSMBAARRATGCDCABHATGD HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Original Motif Original Motif Forward 1 22 0.079272 Species: Mus musculus Original motif 0.360997 0.300272 0.115555 0.223177 0.309749 0.228429 0.166233 0.295589 0.149419 0.176868 0.240155 0.433558 0.379704 0.095791 0.276373 0.248133 0.394549 0.174184 0.130641 0.300626 0.443749 0.070776 0.211081 0.274393 0.364301 0.074356 0.370406 0.190936 0.791976 0.038475 0.093390 0.076159 0.963721 0.001826 0.002456 0.031997 0.004516 0.954596 0.008092 0.032796 0.981080 0.002062 0.002161 0.014697 0.986185 0.001846 0.006976 0.004992 0.059567 0.003649 0.002189 0.934595 0.495328 0.024257 0.240450 0.239965 0.305027 0.094878 0.526069 0.074025 0.418442 0.196237 0.158323 0.226998 0.336713 0.220452 0.191155 0.251680 0.192296 0.300342 0.169047 0.338315 0.240387 0.144634 0.128513 0.486465 0.290763 0.271259 0.116600 0.321377 0.224825 0.296233 0.229255 0.249687 0.493240 0.171285 0.075148 0.260326 Consensus sequence: HHBDHDDAACAATDRHHHHHBW Reverse complement motif 0.260326 0.171285 0.075148 0.493240 0.224825 0.229255 0.296233 0.249687 0.321377 0.271259 0.116600 0.290763 0.486465 0.144634 0.128513 0.240387 0.338315 0.300342 0.169047 0.192296 0.251680 0.220452 0.191155 0.336713 0.226998 0.196237 0.158323 0.418442 0.305027 0.526069 0.094878 0.074025 0.239965 0.024257 0.240450 0.495328 0.934595 0.003649 0.002189 0.059567 0.004992 0.001846 0.006976 0.986185 0.014697 0.002062 0.002161 0.981080 0.004516 0.008092 0.954596 0.032796 0.031997 0.001826 0.002456 0.963721 0.076159 0.038475 0.093390 0.791976 0.364301 0.370406 0.074356 0.190936 0.274393 0.070776 0.211081 0.443749 0.300626 0.174184 0.130641 0.394549 0.248133 0.095791 0.276373 0.379704 0.433558 0.176868 0.240155 0.149419 0.295589 0.228429 0.166233 0.309749 0.223177 0.300272 0.115555 0.360997 Consensus sequence: WBHHHHHMDATTGTTHDHDVHH Alignment: HHBDHDDAACAATDRHHHHHBW HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Original Motif Original Motif Backward 1 22 0.079931 Species: Mus musculus Original motif 0.331499 0.188505 0.182841 0.297156 0.328961 0.213025 0.273530 0.184484 0.197213 0.129292 0.524914 0.148581 0.274491 0.226406 0.312118 0.186986 0.103231 0.393726 0.364988 0.138055 0.552594 0.166422 0.186262 0.094722 0.157618 0.064773 0.616497 0.161112 0.139166 0.176098 0.621185 0.063551 0.748420 0.062398 0.012447 0.176735 0.116584 0.009438 0.860326 0.013653 0.005030 0.003646 0.974877 0.016447 0.055257 0.007181 0.921760 0.015802 0.032748 0.058249 0.052709 0.856293 0.105606 0.872231 0.014370 0.007793 0.019480 0.497379 0.125899 0.357242 0.478582 0.269713 0.061464 0.190242 0.253985 0.287006 0.201320 0.257689 0.319384 0.210231 0.175842 0.294543 0.222123 0.287802 0.201294 0.288782 0.139951 0.376041 0.081133 0.402875 0.213450 0.343835 0.383676 0.059039 0.322294 0.355918 0.148062 0.173725 Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Reverse complement motif 0.322294 0.148062 0.355918 0.173725 0.213450 0.383676 0.343835 0.059039 0.402875 0.376041 0.081133 0.139951 0.288782 0.287802 0.201294 0.222123 0.294543 0.210231 0.175842 0.319384 0.253985 0.201320 0.287006 0.257689 0.190242 0.269713 0.061464 0.478582 0.019480 0.125899 0.497379 0.357242 0.105606 0.014370 0.872231 0.007793 0.856293 0.058249 0.052709 0.032748 0.055257 0.921760 0.007181 0.015802 0.005030 0.974877 0.003646 0.016447 0.116584 0.860326 0.009438 0.013653 0.176735 0.062398 0.012447 0.748420 0.139166 0.621185 0.176098 0.063551 0.157618 0.616497 0.064773 0.161112 0.094722 0.166422 0.186262 0.552594 0.103231 0.364988 0.393726 0.138055 0.274491 0.312118 0.226406 0.186986 0.197213 0.524914 0.129292 0.148581 0.184484 0.213025 0.273530 0.328961 0.297156 0.188505 0.182841 0.331499 Consensus sequence: DVMHHDHKGACCCTCCTSVCBH Alignment: HVGVSAGGAGGGTCYHHHHYVH HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 41 Motif name: Arnt Original motif 0.200000 0.800000 0.000000 0.000000 0.950000 0.000000 0.050000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: CACGTG Reserve complement motif 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.050000 0.950000 0.200000 0.000000 0.800000 0.000000 Consensus sequence: CACGTG ************************************************************************ Best Matches for Motif ID 41 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Original Motif Original Motif Forward 9 6 0.000000 Species: Mus musculus Original motif 0.347837 0.112349 0.403713 0.136102 0.298329 0.175329 0.324534 0.201809 0.421791 0.222553 0.113615 0.242041 0.387506 0.130670 0.161435 0.320389 0.197183 0.244864 0.304611 0.253342 0.345884 0.188786 0.278290 0.187041 0.228203 0.142148 0.408269 0.221381 0.037126 0.006772 0.231775 0.724328 0.055214 0.942800 0.001192 0.000794 0.974119 0.004466 0.015535 0.005880 0.000300 0.958145 0.007498 0.034056 0.034056 0.007498 0.958145 0.000300 0.005880 0.015535 0.004466 0.974119 0.000794 0.001192 0.942800 0.055214 0.724328 0.231775 0.006772 0.037126 0.015720 0.466476 0.315208 0.202596 0.173670 0.355170 0.210710 0.260449 0.407419 0.261539 0.134430 0.196612 0.351478 0.209698 0.262426 0.176399 0.207869 0.284582 0.198951 0.308598 0.434482 0.113724 0.184408 0.267386 0.211144 0.363745 0.173978 0.251133 Consensus sequence: RDHDBVDTCACGTGASBHVHDH Reverse complement motif 0.211144 0.173978 0.363745 0.251133 0.267386 0.113724 0.184408 0.434482 0.308598 0.284582 0.198951 0.207869 0.176399 0.209698 0.262426 0.351478 0.196612 0.261539 0.134430 0.407419 0.173670 0.210710 0.355170 0.260449 0.015720 0.315208 0.466476 0.202596 0.037126 0.231775 0.006772 0.724328 0.000794 0.942800 0.001192 0.055214 0.974119 0.015535 0.004466 0.005880 0.034056 0.958145 0.007498 0.000300 0.000300 0.007498 0.958145 0.034056 0.005880 0.004466 0.015535 0.974119 0.055214 0.001192 0.942800 0.000794 0.724328 0.006772 0.231775 0.037126 0.228203 0.408269 0.142148 0.221381 0.187041 0.188786 0.278290 0.345884 0.197183 0.304611 0.244864 0.253342 0.320389 0.130670 0.161435 0.387506 0.242041 0.222553 0.113615 0.421791 0.298329 0.324534 0.175329 0.201809 0.347837 0.403713 0.112349 0.136102 Consensus sequence: DDHBHBSTCACGTGAHBBDHHM Alignment: RDHDBVDTCACGTGASBHVHDH --------CACGTG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Reverse Complement Reverse Complement Backward 9 6 0.002642 Species: Mus musculus Original motif 0.120938 0.344851 0.124072 0.410138 0.220931 0.169844 0.422396 0.186829 0.127752 0.260812 0.103811 0.507625 0.140641 0.405473 0.287668 0.166218 0.296957 0.155579 0.301094 0.246370 0.219647 0.287193 0.154072 0.339087 0.049294 0.026059 0.121789 0.802859 0.520042 0.289284 0.173423 0.017251 0.049190 0.943472 0.004308 0.003030 0.902609 0.006767 0.074770 0.015854 0.003221 0.971329 0.005512 0.019937 0.019937 0.005512 0.971329 0.003221 0.015854 0.074770 0.006767 0.902609 0.003030 0.004308 0.943472 0.049190 0.003497 0.088920 0.685942 0.221641 0.802859 0.121789 0.026059 0.049294 0.334544 0.155170 0.275193 0.235092 0.275957 0.132104 0.454982 0.136957 0.134097 0.254352 0.422940 0.188611 0.396163 0.432784 0.051281 0.119772 0.276474 0.115627 0.419844 0.188056 0.160759 0.088061 0.649863 0.101318 0.203314 0.166595 0.106821 0.523270 Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Reverse complement motif 0.523270 0.166595 0.106821 0.203314 0.160759 0.649863 0.088061 0.101318 0.276474 0.419844 0.115627 0.188056 0.396163 0.051281 0.432784 0.119772 0.134097 0.422940 0.254352 0.188611 0.275957 0.454982 0.132104 0.136957 0.235092 0.155170 0.275193 0.334544 0.049294 0.121789 0.026059 0.802859 0.003497 0.685942 0.088920 0.221641 0.003030 0.943472 0.004308 0.049190 0.902609 0.074770 0.006767 0.015854 0.019937 0.971329 0.005512 0.003221 0.003221 0.005512 0.971329 0.019937 0.015854 0.006767 0.074770 0.902609 0.049190 0.004308 0.943472 0.003030 0.017251 0.289284 0.173423 0.520042 0.802859 0.026059 0.121789 0.049294 0.339087 0.287193 0.154072 0.219647 0.296957 0.301094 0.155579 0.246370 0.140641 0.287668 0.405473 0.166218 0.507625 0.260812 0.103811 0.127752 0.220931 0.422396 0.169844 0.186829 0.410138 0.344851 0.124072 0.120938 Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM ---------CACGTG-------- --------------------------