MOTIFSIM - MOTIF SIMilarity Detection Tool

Version 2.2

INPUT

Input Parameters
Number of files: 5
Number of top significant motifs: 10
Number of best matches: 10
Similarity cutoff >= 0.75
Matching motif database: UniProbe Mus Musculus
Motif tree: Yes
Combined similar motifs: Yes
Output file type: All
Output file format: All

Input files and motif counts
File name Count of motifs Dataset number
MEME_DM05.txt 46 1
MEME-ChIP_DM05.txt 4 2
PScanChIP_DM05.txt 16 3
RSAT_peak-motifs_DM05.txt 17 4
W-ChIPMotifs_DM05.txt 11 5

RESULTS

Top 10 Significant Motifs - Global Matching (Highest to Lowest)

Dataset #: 5 Motif ID: 84 Motif name: TFW3

Original motif     Consensus sequence: GCACTG Reverse complement motif     Consensus sequence: CAGTGC

Best Matches for Top Significant Motif ID 84 (Highest to Lowest)

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 11
Number of overlap: 6
Similarity score: 0

Alignment:
TGTGGTGTCACAGTGCTCC
---CAGTGC----------

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA


Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0.000794289

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
------CAGTGC-------------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG


Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.00482436

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
--------------CAGTGC----

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA


Dataset #: 4
Motif ID: 76
Motif name: CAcCACAGTGGAGCAct
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0.0201914

Alignment:
CAHCACAGTGGAGCACT
------CAGTGC-----

Original motif     Consensus sequence: CAHCACAGTGGAGCACT Reverse complement motif     Consensus sequence: AGTGCTCCACTGTGDTG


Dataset #: 4
Motif ID: 70
Motif name: CagTGCTCCACTGTGgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.0205497

Alignment:
ABCACAGTGGAGCACTG
----CAGTGC-------

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG


Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 13
Number of overlap: 6
Similarity score: 0.0290883

Alignment:
AGTGCTCCACTGTGGTGTCACAGT
------GCACTG------------

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT


Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 15
Number of overlap: 6
Similarity score: 0.039883

Alignment:
TTCAGCACCATGGACAGCKCC
-CAGTGC--------------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 3
Motif ID: 65
Motif name: Tcfcp2l1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 6
Similarity score: 0.0447224

Alignment:
CCAGYYHVADCCRG
-------CAGTGC-

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG


Dataset #: 1
Motif ID: 5
Motif name: Motif 5
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 6
Similarity score: 0.0459818

Alignment:
CWGAGCCAYCTYTC
--------CAGTGC

Original motif     Consensus sequence: CWGAGCCAYCTYTC Reverse complement motif     Consensus sequence: GAKAGKTGGCTCWG


Dataset #: 4
Motif ID: 75
Motif name: wwCCAmAGTCmt
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.0587933

Alignment:
VDGACTRTGGDD
-----GCACTG-

Original motif     Consensus sequence: DDCCAMAGTCHB Reverse complement motif     Consensus sequence: VDGACTRTGGDD


Dataset #: 5 Motif ID: 85 Motif name: TFW1

Original motif     Consensus sequence: TTGCGCAA Reverse complement motif     Consensus sequence: TTGCGCAA

Best Matches for Top Significant Motif ID 85 (Highest to Lowest)

Dataset #: 1
Motif ID: 21
Motif name: Motif 21
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0195312

Alignment:
TTYGGAAAGCAG
----TTGCGCAA

Original motif     Consensus sequence: CTGCTTTCCMAA Reverse complement motif     Consensus sequence: TTYGGAAAGCAG


Dataset #: 3
Motif ID: 52
Motif name: NR2F1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0276442

Alignment:
AKGYYCAAAGRTCA
TTGCGCAA------

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA


Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0277567

Alignment:
BTRGGDCARAGGKCA
------TTGCGCAA-

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 1
Motif ID: 28
Motif name: Motif 28
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0328125

Alignment:
TTTACTAAAT
-TTGCGCAA-

Original motif     Consensus sequence: ATTTAGTAAA Reverse complement motif     Consensus sequence: TTTACTAAAT


Dataset #: 4
Motif ID: 76
Motif name: CAcCACAGTGGAGCAct
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0336914

Alignment:
CAHCACAGTGGAGCACT
-TTGCGCAA--------

Original motif     Consensus sequence: CAHCACAGTGGAGCACT Reverse complement motif     Consensus sequence: AGTGCTCCACTGTGDTG


Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 17
Number of overlap: 8
Similarity score: 0.0338471

Alignment:
TGGAGCACTGTGACAVCACAGTGG
TTGCGCAA----------------

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA


Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.034375

Alignment:
AGTGCTCCACTGTGGTGTCACAGT
---------------TTGCGCAA-

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT


Dataset #: 4
Motif ID: 70
Motif name: CagTGCTCCACTGTGgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0354167

Alignment:
CAGTGCTCCACTGTGBT
-------TTGCGCAA--

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG


Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0407242

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
---------------TTGCGCAA--

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG


Dataset #: 1
Motif ID: 16
Motif name: Motif 16
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0421875

Alignment:
TWTTGACAYAGA
--TTGCGCAA--

Original motif     Consensus sequence: TCTKTGTCAAWA Reverse complement motif     Consensus sequence: TWTTGACAYAGA


Dataset #: 3 Motif ID: 55 Motif name: ZEB1

Original motif     Consensus sequence: CACCTD Reverse complement motif     Consensus sequence: HAGGTG

Best Matches for Top Significant Motif ID 55 (Highest to Lowest)

Dataset #: 2
Motif ID: 47
Motif name: Motif 47
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0

Alignment:
YGCCACCTDSTGGY
---CACCTD-----

Original motif     Consensus sequence: YGCCACCTDSTGGY Reverse complement motif     Consensus sequence: KCCASDAGGTGGCK


Dataset #: 1
Motif ID: 5
Motif name: Motif 5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0.00902841

Alignment:
CWGAGCCAYCTYTC
------CACCTD--

Original motif     Consensus sequence: CWGAGCCAYCTYTC Reverse complement motif     Consensus sequence: GAKAGKTGGCTCWG


Dataset #: 1
Motif ID: 46
Motif name: Motif 46
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 6
Similarity score: 0.0285279

Alignment:
TATKCTAAACCTAT
-CACCTD-------

Original motif     Consensus sequence: ATAGGTTTAGYATA Reverse complement motif     Consensus sequence: TATKCTAAACCTAT


Dataset #: 1
Motif ID: 20
Motif name: Motif 20
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0346255

Alignment:
TCCTCCTGGAA
--CACCTD---

Original motif     Consensus sequence: TCCTCCTGGAA Reverse complement motif     Consensus sequence: TTCCAGGAGGA


Dataset #: 1
Motif ID: 12
Motif name: Motif 12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.0376742

Alignment:
ACAACACATTT
----CACCTD-

Original motif     Consensus sequence: ACAACACATTT Reverse complement motif     Consensus sequence: AAATGTGTTGT


Dataset #: 1
Motif ID: 34
Motif name: Motif 34
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.0397068

Alignment:
AAAGATGA
-HAGGTG-

Original motif     Consensus sequence: AAAGATGA Reverse complement motif     Consensus sequence: TCATCTTT


Dataset #: 1
Motif ID: 22
Motif name: Motif 22
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.0397068

Alignment:
TTTATGGTGAGCAT
-----HAGGTG---

Original motif     Consensus sequence: TTTATGGTGAGCAT Reverse complement motif     Consensus sequence: ATGCTCACCATAAA


Dataset #: 1
Motif ID: 17
Motif name: Motif 17
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.0458043

Alignment:
GAGGTCAGAAG
HAGGTG-----

Original motif     Consensus sequence: CTTCTGACCTC Reverse complement motif     Consensus sequence: GAGGTCAGAAG


Dataset #: 5
Motif ID: 92
Motif name: TFM11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.0461561

Alignment:
CAMACACACACAYDCACACA
--------CACCTD------

Original motif     Consensus sequence: CAMACACACACAYDCACACA Reverse complement motif     Consensus sequence: TGTGTGDKTGTGTGTGTRTG


Dataset #: 5
Motif ID: 89
Motif name: TFM1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.0467843

Alignment:
CACACACACACWCACACA
------CACCTD------

Original motif     Consensus sequence: CACACACACACWCACACA Reverse complement motif     Consensus sequence: TGTGTGWGTGTGTGTGTG


Dataset #: 1 Motif ID: 3 Motif name: Motif 3

Original motif     Consensus sequence: HCAGRRVACASAG Reverse complement motif     Consensus sequence: CTSTGTBKMCTGH

Best Matches for Top Significant Motif ID 3 (Highest to Lowest)

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 13
Similarity score: 0.00926418

Alignment:
RAGKGMAGVRRGSRCASAGV
------HCAGRRVACASAG-

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK


Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 13
Similarity score: 0.0328703

Alignment:
VDBHMAGGTCACCCTGACCY
---HCAGRRVACASAG----

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV


Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 0.0400966

Alignment:
AGTGSWSCACTGTGAMAMCACAGTG
----------HCAGRRVACASAG--

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG


Dataset #: 5
Motif ID: 90
Motif name: TFM2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 0.0435274

Alignment:
GCAGAKGSAGGABDGHDG
--HCAGRRVACASAG---

Original motif     Consensus sequence: CHHCHBTCCTSCYTCTGC Reverse complement motif     Consensus sequence: GCAGAKGSAGGABDGHDG


Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 13
Similarity score: 0.0448341

Alignment:
YDRCCASYAGRKGGCRSYV
------HCAGRRVACASAG

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM


Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 13
Similarity score: 0.045698

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
---CTSTGTBKMCTGH--------

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA


Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 0.0457253

Alignment:
BTRGGDCARAGGKCA
HCAGRRVACASAG--

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 3
Motif ID: 65
Motif name: Tcfcp2l1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 0.0477557

Alignment:
CKGGDTBDMMCTGG
CTSTGTBKMCTGH-

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG


Dataset #: 5
Motif ID: 94
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 13
Similarity score: 0.0478998

Alignment:
WHAATTAAARAARAAAAAAA
----HCAGRRVACASAG---

Original motif     Consensus sequence: TTTTTTTKTTKTTTAATTHW Reverse complement motif     Consensus sequence: WHAATTAAARAARAAAAAAA


Dataset #: 5
Motif ID: 88
Motif name: TFF11
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.048132

Alignment:
HVCDBBDBCAGCAG
-HCAGRRVACASAG

Original motif     Consensus sequence: CTGCTGBDBBDGBD Reverse complement motif     Consensus sequence: HVCDBBDBCAGCAG


Dataset #: 2 Motif ID: 48 Motif name: Motif 48

Original motif     Consensus sequence: GCARRGGSAGS Reverse complement motif     Consensus sequence: SCTSCCKMTGC

Best Matches for Top Significant Motif ID 48 (Highest to Lowest)

Dataset #: 1
Motif ID: 1
Motif name: Motif 1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0

Alignment:
CYTSCCTCTGC
SCTSCCKMTGC

Original motif     Consensus sequence: CYTSCCTCTGC Reverse complement motif     Consensus sequence: GCAGAGGSAKG


Dataset #: 5
Motif ID: 90
Motif name: TFM2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.000952693

Alignment:
GCAGAKGSAGGABDGHDG
GCARRGGSAGS-------

Original motif     Consensus sequence: CHHCHBTCCTSCYTCTGC Reverse complement motif     Consensus sequence: GCAGAKGSAGGABDGHDG


Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.033658

Alignment:
YDRCCASYAGRKGGCRSYV
------GCARRGGSAGS--

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM


Dataset #: 5
Motif ID: 88
Motif name: TFF11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0410341

Alignment:
CTGCTGBDBBDGBD
--SCTSCCKMTGC-

Original motif     Consensus sequence: CTGCTGBDBBDGBD Reverse complement motif     Consensus sequence: HVCDBBDBCAGCAG


Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 11
Similarity score: 0.0422459

Alignment:
RAGKGMAGVRRGSRCASAGV
----GCARRGGSAGS-----

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK


Dataset #: 3
Motif ID: 65
Motif name: Tcfcp2l1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0533531

Alignment:
CCAGYYHVADCCRG
SCTSCCKMTGC---

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG


Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0578944

Alignment:
GGYGCTGTCCATGGTGCTGAA
---SCTSCCKMTGC-------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0620615

Alignment:
VDBHMAGGTCACCCTGACCY
--GCARRGGSAGS-------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV


Dataset #: 1
Motif ID: 3
Motif name: Motif 3
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0627554

Alignment:
HCAGRRVACASAG
GCARRGGSAGS--

Original motif     Consensus sequence: HCAGRRVACASAG Reverse complement motif     Consensus sequence: CTSTGTBKMCTGH


Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0646979

Alignment:
VHRGGTCABDBTGMCCTB
---SCTSCCKMTGC----

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV


Dataset #: 5 Motif ID: 87 Motif name: TFF1

Original motif     Consensus sequence: AGGACAAAGAVV Reverse complement motif     Consensus sequence: VVTCTTTGTCCT

Best Matches for Top Significant Motif ID 87 (Highest to Lowest)

Dataset #: 3
Motif ID: 51
Motif name: HNF4A
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.0111472

Alignment:
TGMYCTTTGBCCK
-VVTCTTTGTCCT

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK


Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0210867

Alignment:
BTRGGDCARAGGKCA
--AGGACAAAGAVV-

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 12
Similarity score: 0.0351633

Alignment:
BAGGYCABHBTGACCKHV
----VVTCTTTGTCCT--

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV


Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 12
Similarity score: 0.039773

Alignment:
VDBHMAGGTCACCCTGACCY
VVTCTTTGTCCT--------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV


Dataset #: 3
Motif ID: 52
Motif name: NR2F1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0472374

Alignment:
AKGYYCAAAGRTCA
-AGGACAAAGAVV-

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA


Dataset #: 3
Motif ID: 60
Motif name: NR1H2RXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0472884

Alignment:
GTTGACCTTTGACCTTT
---VVTCTTTGTCCT--

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT


Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 12
Similarity score: 0.0530556

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
-------AGGACAAAGAVV------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG


Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 13
Number of overlap: 12
Similarity score: 0.0539204

Alignment:
TGGAGCACTGTGACAVCACAGTGG
------------AGGACAAAGAVV

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA


Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.0558379

Alignment:
TTCAGCACCATGGACAGCKCC
---AGGACAAAGAVV------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 12
Similarity score: 0.0609269

Alignment:
AGTGCTCCACTGTGGTGTCACAGT
------VVTCTTTGTCCT------

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT


Dataset #: 1 Motif ID: 37 Motif name: Motif 37

Original motif     Consensus sequence: ACTTTGG Reverse complement motif     Consensus sequence: CCAAAGT

Best Matches for Top Significant Motif ID 37 (Highest to Lowest)

Dataset #: 4
Motif ID: 69
Motif name: atactttggc
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0

Alignment:
GCCAAAGTAT
-CCAAAGT--

Original motif     Consensus sequence: ATACTTTGGC Reverse complement motif     Consensus sequence: GCCAAAGTAT


Dataset #: 4
Motif ID: 75
Motif name: wwCCAmAGTCmt
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 7
Similarity score: 0.0275974

Alignment:
DDCCAMAGTCHB
--CCAAAGT---

Original motif     Consensus sequence: DDCCAMAGTCHB Reverse complement motif     Consensus sequence: VDGACTRTGGDD


Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 10
Number of overlap: 7
Similarity score: 0.056841

Alignment:
ACTGTGACACCACAGTGGAGCACT
---------CCAAAGT--------

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT


Dataset #: 4
Motif ID: 71
Motif name: AmTGTGACACCACAGT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 10
Number of overlap: 7
Similarity score: 0.0597098

Alignment:
ACTGTGGTGTCACART
ACTTTGG---------

Original motif     Consensus sequence: AMTGTGACACCACAGT Reverse complement motif     Consensus sequence: ACTGTGGTGTCACART


Dataset #: 4
Motif ID: 76
Motif name: CAcCACAGTGGAGCAct
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 7
Similarity score: 0.061942

Alignment:
AGTGCTCCACTGTGDTG
--------ACTTTGG--

Original motif     Consensus sequence: CAHCACAGTGGAGCACT Reverse complement motif     Consensus sequence: AGTGCTCCACTGTGDTG


Dataset #: 4
Motif ID: 70
Motif name: CagTGCTCCACTGTGgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0.0625

Alignment:
ABCACAGTGGAGCACTG
-CCAAAGT---------

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG


Dataset #: 3
Motif ID: 52
Motif name: NR2F1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0.0686813

Alignment:
TGAMCTTTGMMCYT
---ACTTTGG----

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA


Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0.0714286

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
-ACTTTGG-----------------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG


Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.0714286

Alignment:
TGGAGCACTGTGACAVCACAGTGG
---------------CCAAAGT--

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA


Dataset #: 3
Motif ID: 60
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0.0728571

Alignment:
GTTGACCTTTGACCTTT
----ACTTTGG------

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT


Dataset #: 2 Motif ID: 50 Motif name: Motif 50

Original motif     Consensus sequence: GGAAM Reverse complement motif     Consensus sequence: YTTCC

Best Matches for Top Significant Motif ID 50 (Highest to Lowest)

Dataset #: 1
Motif ID: 21
Motif name: Motif 21
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 5
Similarity score: 0.01875

Alignment:
CTGCTTTCCMAA
---YTTCC----

Original motif     Consensus sequence: CTGCTTTCCMAA Reverse complement motif     Consensus sequence: TTYGGAAAGCAG


Dataset #: 1
Motif ID: 41
Motif name: Motif 41
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 5
Similarity score: 0.01875

Alignment:
TTTCCTCCA
YTTCC----

Original motif     Consensus sequence: TGGAGGAAA Reverse complement motif     Consensus sequence: TTTCCTCCA


Dataset #: 1
Motif ID: 43
Motif name: Motif 43
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 5
Similarity score: 0.04375

Alignment:
TGCCTTTCYTT
----YTTCC--

Original motif     Consensus sequence: AAKGAAAGGCA Reverse complement motif     Consensus sequence: TGCCTTTCYTT


Dataset #: 1
Motif ID: 44
Motif name: Motif 44
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 5
Similarity score: 0.05625

Alignment:
TTCTTYCATT
--YTTCC---

Original motif     Consensus sequence: AATGKAAGAA Reverse complement motif     Consensus sequence: TTCTTYCATT


Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 5
Similarity score: 0.06875

Alignment:
TGAAAATATGTT
-------GGAAM

Original motif     Consensus sequence: AACATATTTTCA Reverse complement motif     Consensus sequence: TGAAAATATGTT


Dataset #: 1
Motif ID: 19
Motif name: Motif 19
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 5
Similarity score: 0.06875

Alignment:
CTTTCTCT
-YTTCC--

Original motif     Consensus sequence: AGAGAAAG Reverse complement motif     Consensus sequence: CTTTCTCT


Dataset #: 1
Motif ID: 28
Motif name: Motif 28
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 5
Similarity score: 0.06875

Alignment:
ATTTAGTAAA
-----GGAAM

Original motif     Consensus sequence: ATTTAGTAAA Reverse complement motif     Consensus sequence: TTTACTAAAT


Dataset #: 1
Motif ID: 8
Motif name: Motif 8
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 5
Similarity score: 0.06875

Alignment:
AAGSATTTTCA
------YTTCC

Original motif     Consensus sequence: TGAAAATSCTT Reverse complement motif     Consensus sequence: AAGSATTTTCA


Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 5
Similarity score: 0.0747947

Alignment:
GGYGCTGTCCATGGTGCTGAA
-----YTTCC-----------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 1
Motif ID: 23
Motif name: Motif 23
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 5
Similarity score: 0.075

Alignment:
ATGTWTTCATTMAT
-----YTTCC----

Original motif     Consensus sequence: ATGTWTTCATTMAT Reverse complement motif     Consensus sequence: ATYAATGAAWACAT


Dataset #: 3 Motif ID: 61 Motif name: NR4A2

Original motif     Consensus sequence: AAGGTCAC Reverse complement motif     Consensus sequence: GTGACCTT

Best Matches for Top Significant Motif ID 61 (Highest to Lowest)

Dataset #: 1
Motif ID: 17
Motif name: Motif 17
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0393171

Alignment:
CTTCTGACCTC
GTGACCTT---

Original motif     Consensus sequence: CTTCTGACCTC Reverse complement motif     Consensus sequence: GAGGTCAGAAG


Dataset #: 1
Motif ID: 15
Motif name: Motif 15
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.040519

Alignment:
AAAGRTMAAACTA
-AAGGTCAC----

Original motif     Consensus sequence: AAAGRTMAAACTA Reverse complement motif     Consensus sequence: TAGTTTYAKCTTT


Dataset #: 1
Motif ID: 24
Motif name: Motif 24
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0539119

Alignment:
TTWATGWCTTT
---GTGACCTT

Original motif     Consensus sequence: AAAGWCATWAA Reverse complement motif     Consensus sequence: TTWATGWCTTT


Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0557243

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
------AAGGTCAC-----------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG


Dataset #: 1
Motif ID: 35
Motif name: Motif 35
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0566591

Alignment:
AGATGYTCTTG
-GTGACCTT--

Original motif     Consensus sequence: AGATGYTCTTG Reverse complement motif     Consensus sequence: CAAGAKCATCT


Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 8
Similarity score: 0.0584971

Alignment:
RAGKGMAGVRRGSRCASAGV
---------AAGGTCAC---

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK


Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.060729

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
-------AAGGTCAC---------

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA


Dataset #: 4
Motif ID: 71
Motif name: AmTGTGACACCACAGT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0645146

Alignment:
ACTGTGGTGTCACART
-----AAGGTCAC---

Original motif     Consensus sequence: AMTGTGACACCACAGT Reverse complement motif     Consensus sequence: ACTGTGGTGTCACART


Dataset #: 1
Motif ID: 22
Motif name: Motif 22
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0.0664462

Alignment:
TTTATGGTGAGCAT
GTGACCTT------

Original motif     Consensus sequence: TTTATGGTGAGCAT Reverse complement motif     Consensus sequence: ATGCTCACCATAAA


Dataset #: 1
Motif ID: 18
Motif name: Motif 18
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0674765

Alignment:
GCTGGACTTTG
-GTGACCTT--

Original motif     Consensus sequence: CAAAGTCCAGC Reverse complement motif     Consensus sequence: GCTGGACTTTG


Dataset #: 4 Motif ID: 79 Motif name: cCGCGGrCACG

Original motif     Consensus sequence: CCGCGGRCACG Reverse complement motif     Consensus sequence: CGTGKCCGCGG

Best Matches for Top Significant Motif ID 79 (Highest to Lowest)

Dataset #: 5
Motif ID: 88
Motif name: TFF11
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0478408

Alignment:
HVCDBBDBCAGCAG
---CGTGKCCGCGG

Original motif     Consensus sequence: CTGCTGBDBBDGBD Reverse complement motif     Consensus sequence: HVCDBBDBCAGCAG


Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0484441

Alignment:
TTCAGCACCATGGACAGCKCC
-------CCGCGGRCACG---

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0486581

Alignment:
MGGTCAGGGTGACCTRDBHV
-------CGTGKCCGCGG--

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV


Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0588663

Alignment:
YDRCCASYAGRKGGCRSYV
-------CCGCGGRCACG-

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM


Dataset #: 1
Motif ID: 3
Motif name: Motif 3
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0597806

Alignment:
HCAGRRVACASAG
-CCGCGGRCACG-

Original motif     Consensus sequence: HCAGRRVACASAG Reverse complement motif     Consensus sequence: CTSTGTBKMCTGH


Dataset #: 1
Motif ID: 2
Motif name: Motif 2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0624268

Alignment:
GTGTGTGTGTGTGT
-CGTGKCCGCGG--

Original motif     Consensus sequence: ACACACACACACAC Reverse complement motif     Consensus sequence: GTGTGTGTGTGTGT


Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0625015

Alignment:
RAGKGMAGVRRGSRCASAGV
-----CCGCGGRCACG----

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK


Dataset #: 5
Motif ID: 89
Motif name: TFM1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0628056

Alignment:
CACACACACACWCACACA
-----CCGCGGRCACG--

Original motif     Consensus sequence: CACACACACACWCACACA Reverse complement motif     Consensus sequence: TGTGTGWGTGTGTGTGTG


Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0629476

Alignment:
TGRCCTKTGHCCKAB
---CGTGKCCGCGG-

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 5
Motif ID: 92
Motif name: TFM11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 11
Similarity score: 0.0634175

Alignment:
CAMACACACACAYDCACACA
-------CCGCGGRCACG--

Original motif     Consensus sequence: CAMACACACACAYDCACACA Reverse complement motif     Consensus sequence: TGTGTGDKTGTGTGTGTRTG


Results created by MOTIFSIM on 06-19-2018 09:09:18
Runtime: 1079.09 seconds

MOTIFSIM is written by Ngoc Tam L. Tran
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