**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 5 Number of top significant motifs: 10 Number of best matches: 10 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Motif tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # MEME_DM05.txt 46 1 MEME-ChIP_DM05.txt 4 2 PScanChIP_DM05.txt 16 3 RSAT_peak-motifs_DM05.txt 17 4 W-ChIPMotifs_DM05.txt 11 5 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** *************************************************************** Combined Motifs for Top Best Match Motif ID 1 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 1 TFM2 Original Motif Original Motif CYTSCCTCTGC CHHCHBTCCTSCYTCTGC CHHCHBTCCTSCCTCTGC Direction: Forward Position #: 8 Overlap #: 11 Alignment: -------CYTSCCTCTGC CHHCHBTCCTSCYTCTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 48 Reverse Complement Original Motif GCAGAGGSAGGABDGHDG GCARRGGSAGS GCAGAGGSAGSABDGHDG Direction: Forward Position #: 1 Overlap #: 11 Alignment: GCAGAGGSAGGABDGHDG GCARRGGSAGS------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Original Motif GCAGAGGSAGSABDGHDG CTGCTGBDBBDGBD GCWGCKGSAGSHBDVHDG Direction: Forward Position #: 2 Overlap #: 14 Alignment: GCAGAGGSAGSABDGHDG -CTGCTGBDBBDGBD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Reverse Complement Reverse Complement CHHVHBHSCTSCRGCWGC VCTSTGKSCMKBCTRCYCTK VCTSTGKSCMKBCTRCYHTBHBHSCTSCRGCWGC Direction: Forward Position #: 17 Overlap #: 4 Alignment: ----------------CHHVHBHSCTSCRGCWGC VCTSTGKSCMKBCTRCYCTK-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Reverse Complement VCTSTGKSCMKBCTRCYHTBHBHSCTSCRGCWGC BMSMGCCYMCTKSTGGMHM VCTSTGKSCMKBCTRCYHTHVCDCCYVCWGSTGSMHM Direction: Forward Position #: 19 Overlap #: 16 Alignment: VCTSTGKSCMKBCTRCYHTBHBHSCTSCRGCWGC--- ------------------BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Reverse Complement VCTSTGKSCMKBCTRCYHTHVCDCCYVCWGSTGSMHM GGYGCTGTCCATGGTGCTGAA VCTSTGKSCMKDSHGCTSTCCMDSSTSCTGMWGSMHM Direction: Forward Position #: 12 Overlap #: 21 Alignment: VCTSTGKSCMKBCTRCYHTHVCDCCYVCWGSTGSMHM -----------GGYGCTGTCCATGGTGCTGAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif YDRSCWYCAGSASSDYGGASAGCHSHRRGSRCASAGV VDBHMAGGTCACCCTGACCY YDRSCWYCAGSASSDYGGASAGVDSHVRGGDCASMSTGACCY Direction: Forward Position #: 23 Overlap #: 15 Alignment: YDRSCWYCAGSASSDYGGASAGCHSHRRGSRCASAGV----- ----------------------VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Original Motif MGGTCASYSTGDCCKBDSDVCTSTCCMDSSTSCTGMWGSMHM BTRGGDCARAGGKCA MGGTCASYSTGDCCKBDSDVCTSTCCVDVGKVCWRAGGBCHM Direction: Forward Position #: 27 Overlap #: 15 Alignment: MGGTCASYSTGDCCKBDSDVCTSTCCMDSSTSCTGMWGSMHM --------------------------BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 Combined Motif Original Motif Reverse Complement MGGTCASYSTGDCCKBDSDVCTSTCCVDVGKVCWRAGGBCHM CKGGDTBDMMCTGG MGGTCASYSTGDCCKBDSDVCTSTCBGGDKBBMWSDGGBCHM Direction: Forward Position #: 25 Overlap #: 14 Alignment: MGGTCASYSTGDCCKBDSDVCTSTCCVDVGKVCWRAGGBCHM ------------------------CKGGDTBDMMCTGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 47 Reverse Complement Original Motif YHGBCCDSWRBVYHCCBGASAGVDSHVRGGDCASMSTGACCY YGCCACCTDSTGGY YGCCVCCYDSTGBHYHCCBGASAGVDSHVRGGDCASMSTGACCY Direction: Forward Position #: 3 Overlap #: 12 Alignment: --YHGBCCDSWRBVYHCCBGASAGVDSHVRGGDCASMSTGACCY YGCCACCTDSTGGY------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCCCCGCSssk Combined Motif Original Motif Reverse Complement YGCCVCCYDSTGBHYHCCBGASAGVDSHVRGGDCASMSTGACCY BBSGGCGGGGBS YGCCVCCYDSTGBHYHCCBGASAGVDBBVGGSGSRGVSTGACCY Direction: Forward Position #: 27 Overlap #: 12 Alignment: YGCCVCCYDSTGBHYHCCBGASAGVDSHVRGGDCASMSTGACCY --------------------------BBSGGCGGGGBS------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 2 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 TFM1 Reverse Complement Reverse Complement GTGTGTGTGTGTGT TGTGTGWGTGTGTGTGTG TGTGTGTGTGTGTGTGTG Direction: Backward Position #: 4 Overlap #: 14 Alignment: -GTGTGTGTGTGTGT--- TGTGTGWGTGTGTGTGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Reverse Complement Original Motif CACACACACACACACACA CAMACACACACAYDCACACA CAMACACACACAYDCACACACACACACACACACA Direction: Forward Position #: 17 Overlap #: 4 Alignment: ----------------CACACACACACACACACA CAMACACACACAYDCACACA-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement CAMACACACACAYDCACACACACACACACACACA AGTGSWSCACTGTGAMAMCACAGTG AGTGSWSCACTGYRMMMACACASWBDCACACACACACACACACACA Direction: Forward Position #: 13 Overlap #: 13 Alignment: ------------CAMACACACACAYDCACACACACACACACACACA AGTGSWSCACTGTGAMAMCACAGTG--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif TGTGTGTGTGTGTGTGTGTGDBWSTGTGTRYYMMCAGTGSWSCACT KTTTTTTKTTTTTTDAAB TGTGTKTKTKTGTKTKTKTRABWSTGTGTRYYMMCAGTGSWSCACT Direction: Forward Position #: 5 Overlap #: 18 Alignment: TGTGTGTGTGTGTGTGTGTGDBWSTGTGTRYYMMCAGTGSWSCACT ----KTTTTTTKTTTTTTDAAB------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Original Motif Reverse Complement TGTGTKTKTKTGTKTKTKTRABWSTGTGTRYYMMCAGTGSWSCACT TGTGTSWGTBTSTG TGTGTKTKTKTGTKTKTGTGTSWGTGTGTGYYMMCAGTGSWSCACT Direction: Forward Position #: 17 Overlap #: 14 Alignment: TGTGTKTKTKTGTKTKTKTRABWSTGTGTRYYMMCAGTGSWSCACT ----------------TGTGTSWGTBTSTG---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Reverse Complement AGTGSWSCACTGYRMMCACACACWSACACARAYACAYARARACACA WHAATTAAARAARAAAAAAA AGTGSWSCACTGYRMMCACACACWSWHAHWDAHAVAHAAAAAMAMA Direction: Forward Position #: 26 Overlap #: 20 Alignment: AGTGSWSCACTGYRMMCACACACWSACACARAYACAYARARACACA -------------------------WHAATTAAARAARAAAAAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Original Motif Original Motif AGTGSWSCACTGYRMMCACACACWSWHAHWDAHAVAHAAAAAMAMA HAAAAHAAARMAAA AGTGSWSCACTGYRMMCACACACWSWHAHWDAAAAAHAAARMAAAA Direction: Forward Position #: 32 Overlap #: 14 Alignment: AGTGSWSCACTGYRMMCACACACWSWHAHWDAHAVAHAAAAAMAMA -------------------------------HAAAAHAAARMAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Reverse Complement AGTGSWSCACTGYRMMCACACACWSWHAHWDAAAAAHAAARMAAAA HVCDBBDBCAGCAG AGTGSWSCACTGYRMMCACACASHBDCAGHWVAAAAHAAARMAAAA Direction: Forward Position #: 19 Overlap #: 14 Alignment: AGTGSWSCACTGYRMMCACACACWSWHAHWDAAAAAHAAARMAAAA ------------------HVCDBBDBCAGCAG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Original Motif Original Motif AGTGSWSCACTGYRMMCACACASHBDCAGHWVAAAAHAAARMAAAA AGGACAAAGAVV AGTGSWSCACTGYRMMCACACASHBDCAGHWARRAMAAARAVMAAA Direction: Forward Position #: 32 Overlap #: 12 Alignment: AGTGSWSCACTGYRMMCACACASHBDCAGHWVAAAAHAAARMAAAA -------------------------------AGGACAAAGAVV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif srACyCCGAyr Reverse Complement Reverse Complement TTTYBTKTTTRTKMTWDCTGDBHSTGTGTGYYMMCAGTGSWSCACT KKTCGGKGTKS TTTCGGKKTTSTKMTWDCTGDBHSTGTGTGYYMMCAGTGSWSCACT Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTTYBTKTTTRTKMTWDCTGDBHSTGTGTGYYMMCAGTGSWSCACT KKTCGGKGTKS----------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 3 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 TFM12 Original Motif Original Motif HCAGRRVACASAG RAGKGMAGVRRGSRCASAGV RAGKGMWSARRRVRCASAGV Direction: Forward Position #: 7 Overlap #: 13 Alignment: ------HCAGRRVACASAG- RAGKGMAGVRRGSRCASAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement RAGKGMWSARRRVRCASAGV MGGTCAGGGTGACCTRDBHV RAGGBCASDRKGRMCWSDGHV Direction: Forward Position #: 2 Overlap #: 19 Alignment: RAGKGMWSARRRVRCASAGV- -MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Reverse Complement Original Motif VDCDSWGRKCRMDSTGVCCTK CACTGTGRTRTCACAGTGSWSCACT CACTGTGRTVDCACWGTSCTBCACT Direction: Forward Position #: 1 Overlap #: 21 Alignment: VDCDSWGRKCRMDSTGVCCTK---- CACTGTGRTRTCACAGTGSWSCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Original Motif AGTGBAGSACWGTGDVAMCACAGTG CHHCHBTCCTSCYTCTGC AGTGBABBHCHBTSHDVCCWCWGYG Direction: Forward Position #: 7 Overlap #: 18 Alignment: AGTGBAGSACWGTGDVAMCACAGTG ------CHHCHBTCCTSCYTCTGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Reverse Complement AGTGBABBHCHBTSHDVCCWCWGYG BMSMGCCYMCTKSTGGMHM AGTGSMGCCCMCTBVTGSCHVWGYG Direction: Forward Position #: 3 Overlap #: 19 Alignment: AGTGBABBHCHBTSHDVCCWCWGYG --BMSMGCCYMCTKSTGGMHM---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Original Motif Original Motif AGTGSMGCCCMCTBVTGSCHVWGYG TGGAGCACTGTGACAVCACAGTGG AGTGGAGCMCTSTGAYRSCACAGTGG Direction: Forward Position #: 3 Overlap #: 23 Alignment: AGTGSMGCCCMCTBVTGSCHVWGYG- --TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Reverse Complement AGTGGAGCMCTSTGAYRSCACAGTGG TGRCCTKTGHCCKAB AGTGGWGVMCTKTGVCMBMVCAGTGG Direction: Forward Position #: 6 Overlap #: 15 Alignment: AGTGGAGCMCTSTGAYRSCACAGTGG -----TGRCCTKTGHCCKAB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 Combined Motif Reverse Complement Reverse Complement CCACTGBRBRGBCAYAGRVCWCCACT CKGGDTBDMMCTGG CCACYKGGBDDBMACWGGVCWCCACT Direction: Forward Position #: 5 Overlap #: 14 Alignment: CCACTGBRBRGBCAYAGRVCWCCACT ----CKGGDTBDMMCTGG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Reverse Complement Original Motif AGTGGWGVCCWGTRVHDVCCYKGTGG TTTTTTTKTTKTTTAATTHW TTTTTTTKTTKTTTARTKVWGVCCWGTRVHDVCCYKGTGG Direction: Forward Position #: 15 Overlap #: 6 Alignment: --------------AGTGGWGVCCWGTRVHDVCCYKGTGG TTTTTTTKTTKTTTAATTHW-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Original Motif TTTTTTTKTTKTTTARTKVWGVCCWGTRVHDVCCYKGTGG CTGCTGBDBBDGBD TTTTTTTKTTKTTTARTKVWGVCCWSTGCTGVVBHDGHGG Direction: Forward Position #: 26 Overlap #: 14 Alignment: TTTTTTTKTTKTTTARTKVWGVCCWGTRVHDVCCYKGTGG -------------------------CTGCTGBDBBDGBD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 4 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 TFM13 Original Motif Reverse Complement HAAAAHAAARMAAA WHAATTAAARAARAAAAAAA WHAATHAAAAAAAAAMAAAA Direction: Forward Position #: 6 Overlap #: 14 Alignment: -----HAAAAHAAARMAAA- WHAATTAAARAARAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif TTTTYTTTTTTTTTHATTDW KTTTTTTKTTTTTTDAAB TTTTTTTTTTTTTTTAWWBW Direction: Forward Position #: 2 Overlap #: 18 Alignment: TTTTYTTTTTTTTTHATTDW -KTTTTTTKTTTTTTDAAB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Reverse Complement Original Motif WBWWTAAAAAAAAAAAAAAA AAAAAAAAAAAAAT WBWAAAAAAAAAAAAAWAAA Direction: Forward Position #: 4 Overlap #: 14 Alignment: WBWWTAAAAAAAAAAAAAAA ---AAAAAAAAAAAAAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 33 Combined Motif Reverse Complement Original Motif TTTWTTTTTTTTTTTTTWBW TTTAATGTYTTTWA TTTTTTWWTKTTTTTWWWBW Direction: Forward Position #: 4 Overlap #: 14 Alignment: TTTWTTTTTTTTTTTTTWBW ---TTTAATGTYTTTWA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Reverse Complement TTTTTTWWTKTTTTTWWWBW TGTGTGDKTGTGTGTGTRTG TKTKTKWDTGTKTKTDWRKK Direction: Forward Position #: 1 Overlap #: 20 Alignment: TTTTTTWWTKTTTTTWWWBW TGTGTGDKTGTGTGTGTRTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Reverse Complement TKTKTKWDTGTKTKTDWRKK TGTGTGWGTGTGTGTGTG TGTKTGWKTGTGTGTGTRKK Direction: Forward Position #: 1 Overlap #: 18 Alignment: TKTKTKWDTGTKTKTDWRKK TGTGTGWGTGTGTGTGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Original Motif Reverse Complement TGTKTGWKTGTGTGTGTRKK TGTGTSWGTBTSTG TGTGTSWGTGTGTGTGTRKK Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGTKTGWKTGTGTGTGTRKK TGTGTSWGTBTSTG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif YRMACACACACACWSACACA RAGKGMAGVRRGSRCASAGV YRVAVASMVRHAVDSACACAGV Direction: Forward Position #: 3 Overlap #: 18 Alignment: YRMACACACACACWSACACA-- --RAGKGMAGVRRGSRCASAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 5 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 CTCF Reverse Complement Original Motif GAKAGKTGGCTCWG YDRCCASYAGRKGGCRSYV YDRCCRVBAGGTGGCDCWG Direction: Backward Position #: 1 Overlap #: 14 Alignment: -----GAKAGKTGGCTCWG YDRCCASYAGRKGGCRSYV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Original Motif CWGHGCCACCTVBKGGMHM TGGAGCACTGTGACAVCACAGTGG TGGAGCACTGTGMCACCWCHGKGVHM Direction: Forward Position #: 8 Overlap #: 17 Alignment: -------CWGHGCCACCTVBKGGMHM TGGAGCACTGTGACAVCACAGTGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif TGGAGCACTGTGMCACCWCHGKGVHM RAGKGMAGVRRGSRCASAGV TGGAGBRCWGHGVSRVCWSAGBGVHM Direction: Forward Position #: 3 Overlap #: 20 Alignment: TGGAGCACTGTGMCACCWCHGKGVHM --RAGKGMAGVRRGSRCASAGV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif TGGAGBRCWGHGVSRVCWSAGBGVHM AGTGCTCCACTGTGGTGTCACAGT AGTGSWSCACTGTGVYGTCACAGTGVHM Direction: Forward Position #: 3 Overlap #: 22 Alignment: --TGGAGBRCWGHGVSRVCWSAGBGVHM AGTGCTCCACTGTGGTGTCACAGT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Original Motif AGTGSWSCACTGTGVYGTCACAGTGVHM AMTGTGACACCACAGT AVTGYKACACYRYRGTGTCACAGTGVHM Direction: Forward Position #: 1 Overlap #: 16 Alignment: AGTGSWSCACTGTGVYGTCACAGTGVHM AMTGTGACACCACAGT------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Original Motif Reverse Complement AVTGYKACACYRYRGTGTCACAGTGVHM AGTGSWSCACTGTGAMAMCACAGTG AGTGBDVCACTGTGVYRHCACAGTGVHM Direction: Forward Position #: 1 Overlap #: 25 Alignment: AVTGYKACACYRYRGTGTCACAGTGVHM AGTGSWSCACTGTGAMAMCACAGTG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement AGTGBDVCACTGTGVYRHCACAGTGVHM BAGGYCABHBTGACCKHV AGTRGDBCACYGTGACMBYACAGTGVHM Direction: Forward Position #: 3 Overlap #: 18 Alignment: AGTGBDVCACTGTGVYRHCACAGTGVHM --BAGGYCABHBTGACCKHV-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif AGTRGDBCACYGTGACMBYACAGTGVHM VDBHMAGGTCACCCTGACCY AGTRGDBCACYGTGAVVBHVMRGTSABMCTGACCY Direction: Forward Position #: 16 Overlap #: 13 Alignment: AGTRGDBCACYGTGACMBYACAGTGVHM------- ---------------VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Reverse Complement Reverse Complement MGGTCAGRBTSACKRBDVVVTCACMGTGVHCMACT GGAGCACTGTGACACCACA MGGTCAGGRKCACTGTGACAYCACAGTGVHCMACT Direction: Forward Position #: 7 Overlap #: 19 Alignment: MGGTCAGRBTSACKRBDVVVTCACMGTGVHCMACT ------GGAGCACTGTGACACCACA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 Combined Motif Reverse Complement Reverse Complement AGTRGDBCACTGTGKTGTCACAGTGYKCCTGACCY CKGGDTBDMMCTGG AGTRGDBCACYKKGDTBBMACDGKGYKCCTGACCY Direction: Forward Position #: 11 Overlap #: 14 Alignment: AGTRGDBCACTGTGKTGTCACAGTGYKCCTGACCY ----------CKGGDTBDMMCTGG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 6 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 TFM11 Reverse Complement Reverse Complement TGTGTSWGTBTSTG TGTGTGDKTGTGTGTGTRTG TGTGTSWGTGTGTGTGTRTG Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGTGTSWGTBTSTG------ TGTGTGDKTGTGTGTGTRTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Reverse Complement TGTGTSWGTGTGTGTGTRTG TGTGTGWGTGTGTGTGTG TGTGTGWGTGTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 18 Alignment: TGTGTSWGTGTGTGTGTRTG TGTGTGWGTGTGTGTGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif CACACACACACACWCACACA TTCAGCACCATGGACAGCKCC TTCAGCACCAYRSACASMBVCWCACACA Direction: Forward Position #: 9 Overlap #: 13 Alignment: --------CACACACACACACWCACACA TTCAGCACCATGGACAGCKCC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Original Motif Reverse Complement TTCAGCACCAYRSACASMBVCWCACACA BAGGYCABHBTGACCKHV BAGGYCWYCAKSACCDHRSACASMBVCWCACACA Direction: Forward Position #: 7 Overlap #: 12 Alignment: ------TTCAGCACCAYRSACASMBVCWCACACA BAGGYCABHBTGACCKHV---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Reverse Complement BAGGYCWYCAKSACCDHRSACASMBVCWCACACA GGAGCACTGTGACACCACA GBAGSACWKYGDSACCAHASACASMBVCWCACACA Direction: Forward Position #: 2 Overlap #: 18 Alignment: -BAGGYCWYCAKSACCDHRSACASMBVCWCACACA GGAGCACTGTGACACCACA---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Reverse Complement Original Motif TGTGTGWGBBYSTGTSTDTGGTSDCMYWGTSCTBC TTTTTTTKTTKTTTAATTHW TTKTKTKKKTKTBTRWBTDWGGTSDCMYWGTSCTBC Direction: Forward Position #: 2 Overlap #: 19 Alignment: -TGTGTGWGBBYSTGTSTDTGGTSDCMYWGTSCTBC TTTTTTTKTTKTTTAATTHW---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Original Motif GBAGSACWKYGDSACCWDABWMAVARARRRARARAA TGGAGCACTGTGACAVCACAGTGG TGGAGCACTGTGACACCACAGTVRVARARRRARARAA Direction: Forward Position #: 2 Overlap #: 23 Alignment: -GBAGSACWKYGDSACCWDABWMAVARARRRARARAA TGGAGCACTGTGACAVCACAGTGG------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Original Motif Original Motif TGGAGCACTGTGACACCACAGTVRVARARRRARARAA HAAAAHAAARMAAA TGGAGCACTGTGACACCACAGTVRHAAAADAAAAMAAA Direction: Forward Position #: 25 Overlap #: 13 Alignment: TGGAGCACTGTGACACCACAGTVRVARARRRARARAA- ------------------------HAAAAHAAARMAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Reverse Complement TGGAGCACTGTGACACCACAGTVRHAAAADAAAAMAAA BTTHAAAAAAYAAAAAAR TGGAGCACTGTGACACCACAGBTWHAAAAAAMAAAAAAR Direction: Forward Position #: 22 Overlap #: 17 Alignment: TGGAGCACTGTGACACCACAGTVRHAAAADAAAAMAAA- ---------------------BTTHAAAAAAYAAAAAAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif TGGAGCACTGTGACACCACAGBTWHAAAAAAMAAAAAAR AGTGCTCCACTGTGGTGTCACAGT AGTGSWSCACTGTGRYRYCACAGTTWHAAAAAAMAAAAAAR Direction: Forward Position #: 3 Overlap #: 22 Alignment: --TGGAGCACTGTGACACCACAGBTWHAAAAAAMAAAAAAR AGTGCTCCACTGTGGTGTCACAGT----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 7 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Motif 25 Original Motif Reverse Complement AAAATKCTATT AATCTGTTATT AAWMTGYTATT Direction: Backward Position #: 1 Overlap #: 11 Alignment: AAAATKCTATT AATCTGTTATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 13 Original Motif Original Motif AAWMTGYTATT AAWATRTATTT AAWATGTWWTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAWMTGYTATT AAWATRTATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 45 Original Motif Original Motif AAWATGTWWTT TAASTCTWTTTTAA WAAVTSTWTTTTAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAWATGTWWTT--- TAASTCTWTTTTAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 12 Original Motif Reverse Complement WAAVTSTWTTTTAA AAATGTGTTGT AAAWGTGTTKTTTAA Direction: Forward Position #: 2 Overlap #: 10 Alignment: -WAAVTSTWTTTTAA AAATGTGTTGT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 33 Original Motif Original Motif AAAWGTGTTKTTTAA TTTAATGTYTTTWA WWWARTGTTTTTTAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: AAAWGTGTTKTTTAA TTTAATGTYTTTWA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Original Motif Reverse Complement WWWARTGTTTTTTAA TAGTTTYAKCTTT TAGTTTHATSTTTTTTAA Direction: Forward Position #: 4 Overlap #: 10 Alignment: ---WWWARTGTTTTTTAA TAGTTTYAKCTTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Reverse Complement Original Motif TTAAAAAASATHAAACTA AAAAAAAAAAAAAT TTAAAAAARAWAAAAYTA Direction: Forward Position #: 3 Overlap #: 14 Alignment: TTAAAAAASATHAAACTA --AAAAAAAAAAAAAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Original Motif Reverse Complement TTAAAAAARAWAAAAYTA TGAAAATATGTT TKAAAAWAWRTWAAAYTA Direction: Forward Position #: 1 Overlap #: 12 Alignment: TTAAAAAARAWAAAAYTA TGAAAATATGTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 11 Combined Motif Reverse Complement Reverse Complement TAKTTTWAMWTWTTTTYA TTYAAACATYTT TATTTWAACATHTTTTYA Direction: Forward Position #: 3 Overlap #: 12 Alignment: TAKTTTWAMWTWTTTTYA --TTYAAACATYTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 10 Original Motif Reverse Complement TATTTWAACATHTTTTYA AAACAATYTTT AAACWATTTTWACATHTTTTYA Direction: Forward Position #: 5 Overlap #: 7 Alignment: ----TATTTWAACATHTTTTYA AAACAATYTTT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 8 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Motif 9 Original Motif Reverse Complement TGAAAATSCTT TGAAAATATGTT TGAAAATVYKTT Direction: Backward Position #: 2 Overlap #: 11 Alignment: TGAAAATSCTT- TGAAAATATGTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 33 Original Motif Original Motif TGAAAATVYKTT TTTAATGTYTTTWA TKWAAWKDYTTTWA Direction: Forward Position #: 1 Overlap #: 12 Alignment: TGAAAATVYKTT-- TTTAATGTYTTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Original Motif Reverse Complement TKWAAWKDYTTTWA TTYAAACATYTT TTHAAABATTTTWA Direction: Forward Position #: 1 Overlap #: 12 Alignment: TKWAAWKDYTTTWA TTYAAACATYTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 10 Reverse Complement Reverse Complement TWAAAATBTTTHAA AAACAATYTTT WAAMAATBTTTHAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: TWAAAATBTTTHAA AAACAATYTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement WAAMAATBTTTHAA CCACTGTGVTGTCACAGTGCTCCA CCACTGTGVTGTMACARTGYTYMAA Direction: Forward Position #: 12 Overlap #: 13 Alignment: -----------WAAMAATBTTTHAA CCACTGTGVTGTCACAGTGCTCCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Reverse Complement CCACTGTGVTGTMACARTGYTYMAA GGAGCACTGTGACACCACA GGASCACTGTGAYRHCACARTGYTYMAA Direction: Forward Position #: 4 Overlap #: 16 Alignment: ---CCACTGTGVTGTMACARTGYTYMAA GGAGCACTGTGACACCACA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 9 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Motif 11 Original Motif Original Motif AACATATTTTCA AAMATGTTTMAA AACATRTTTHMA Direction: Forward Position #: 1 Overlap #: 12 Alignment: AACATATTTTCA AAMATGTTTMAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 45 Reverse Complement Reverse Complement TYHAAAKATGTT TTAAAAWAGASTTA TTAAAADAKRBTTA Direction: Forward Position #: 1 Overlap #: 12 Alignment: TYHAAAKATGTT-- TTAAAAWAGASTTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 33 Original Motif Original Motif TTAAAADAKRBTTA TTTAATGTYTTTWA TTWAAWGWBWTTTA Direction: Forward Position #: 1 Overlap #: 14 Alignment: TTAAAADAKRBTTA TTTAATGTYTTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif TTWAAWGWBWTTTA AGTGCTCCACTGTGGTGTCACAGT AGTGCTCCACTGTGGTKTYAMAGTBWTTTA Direction: Forward Position #: 17 Overlap #: 8 Alignment: ----------------TTWAAWGWBWTTTA AGTGCTCCACTGTGGTGTCACAGT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM1 Original Motif Reverse Complement AGTGCTCCACTGTGGTKTYAMAGTBWTTTA TGTGTGWGTGTGTGTGTG TGTGTGWGTGTGWGTGYKCCACTGTGGTKTYAMAGTBWTTTA Direction: Forward Position #: 13 Overlap #: 6 Alignment: ------------AGTGCTCCACTGTGGTKTYAMAGTBWTTTA TGTGTGWGTGTGTGTGTG------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Reverse Complement TGTGTGWGTGTGWGTGYKCCACTGTGGTKTYAMAGTBWTTTA ACTGTGGTGTCACART ACTGTKGTGTSABWGTGWGTGYKCCACTGTGGTKTYAMAGTBWTTTA Direction: Forward Position #: 6 Overlap #: 11 Alignment: -----TGTGTGWGTGTGWGTGYKCCACTGTGGTKTYAMAGTBWTTTA ACTGTGGTGTCACART------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Original Motif Original Motif ACTGTKGTGTSABWGTGWGTGYKCCACTGTGGTKTYAMAGTBWTTTA TGGAGCACTGTGACAVCACAGTGG ACTGTKGTGTSABWGTGWGTGBWSCACTGTGRYWYCACAGTKDTTTA Direction: Forward Position #: 20 Overlap #: 24 Alignment: ACTGTKGTGTSABWGTGWGTGYKCCACTGTGGTKTYAMAGTBWTTTA -------------------TGGAGCACTGTGACAVCACAGTGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Reverse Complement ACTGTKGTGTSABWGTGWGTGBWSCACTGTGRYWYCACAGTKDTTTA TGTGTGDKTGTGTGTGTRTG ACTGTKGTGTSABTGTGTGTGDGBSWSTGTGDKWYCACAGTKDTTTA Direction: Forward Position #: 14 Overlap #: 20 Alignment: ACTGTKGTGTSABWGTGWGTGBWSCACTGTGRYWYCACAGTKDTTTA -------------TGTGTGDKTGTGTGTGTRTG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Original Motif Reverse Complement ACTGTKGTGTSABTGTGTGTGDGBSWSTGTGDKWYCACAGTKDTTTA AGTGSWSCACTGTGAMAMCACAGTG ACTGTKGTGTSABTGTGWGTGBDBCACTGTGDVAHCACAGTGDTTTA Direction: Forward Position #: 18 Overlap #: 25 Alignment: ACTGTKGTGTSABTGTGTGTGDGBSWSTGTGDKWYCACAGTKDTTTA -----------------AGTGSWSCACTGTGAMAMCACAGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 49 Reverse Complement Original Motif TAAAHCACTGTGDTVDCACAGTGBDBCACWCACABTSACACRACAGT AAAAAAAAAAAAAT AAAAAWAAAAMAMTGTGDTVDCACAGTGBDBCACWCACABTSACACRACAGT Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----TAAAHCACTGTGDTVDCACAGTGBDBCACWCACABTSACACRACAGT AAAAAAAAAAAAAT-------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 10 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 Motif 45 Original Motif Reverse Complement AAAMATTGTTT TTAAAAWAGASTTA TTAAAAHAKWGTTW Direction: Backward Position #: 1 Overlap #: 11 Alignment: ---AAAMATTGTTT TTAAAAWAGASTTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 13 Reverse Complement Original Motif WAACWYTHTTTTAA AAWATRTATTT AAAMTNTATTTTAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: WAACWYTHTTTTAA AAWATRTATTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Reverse Complement Reverse Complement TTAAAATANAYTTT TGAAAATATGTT TKAAAATATRTTTT Direction: Forward Position #: 1 Overlap #: 12 Alignment: TTAAAATANAYTTT TGAAAATATGTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Original Motif TKAAAATATRTTTT TGAAAATSCTT TGAAAATVYTTTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: TKAAAATATRTTTT TGAAAATSCTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Reverse Complement Original Motif AAAAAKBATTTTCA AATAACAGATT AAWAAMRGATTTTCA Direction: Forward Position #: 2 Overlap #: 10 Alignment: -AAAAAKBATTTTCA AATAACAGATT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 7 Original Motif Original Motif AAWAAMRGATTTTCA AAAATKCTATT AAAAWBMTATTTTCA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAWAAMRGATTTTCA AAAATKCTATT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 33 Reverse Complement Reverse Complement TGAAAATARBWTTTT TWAAAKACATTAAA TWAAAKACWKWAAATARBWTTTT Direction: Forward Position #: 9 Overlap #: 6 Alignment: --------TGAAAATARBWTTTT TWAAAKACATTAAA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Original Motif Original Motif TWAAAKACWKWAAATARBWTTTT AAAAAAAAAAAAAT TWAAADAMAWAAAAWAATWTTTT Direction: Forward Position #: 5 Overlap #: 14 Alignment: TWAAAKACWKWAAATARBWTTTT ----AAAAAAAAAAAAAT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 29 Original Motif Reverse Complement TWAAADAMAWAAAAWAATWTTTT TAGCAATAAAT TAGYAAWAAAHAWAAAAWAATWTTTT Direction: Forward Position #: 4 Overlap #: 8 Alignment: ---TWAAADAMAWAAAAWAATWTTTT TAGCAATAAAT--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 12 Reverse Complement Original Motif AAAAWATTWTTTTWTHTTTWTTKCTA ACAACACATTT AMAACAYWTTTTTWTHTTTWTTKCTA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAAAWATTWTTTTWTHTTTWTTKCTA ACAACACATTT--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 11 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 11 Motif 9 Original Motif Original Motif AAMATGTTTMAA AACATATTTTCA AACATRTTTHMA Direction: Backward Position #: 1 Overlap #: 12 Alignment: AAMATGTTTMAA AACATATTTTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 33 Reverse Complement Original Motif TYHAAAKATGTT TTTAATGTYTTTWA TTTAAWGWTKTTWA Direction: Forward Position #: 1 Overlap #: 12 Alignment: TYHAAAKATGTT-- TTTAATGTYTTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 45 Reverse Complement Original Motif TWAARAWCWTTAAA TAASTCTWTTTTAA TAAVTMTHTTTTAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: TWAARAWCWTTAAA TAASTCTWTTTTAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Original Motif Original Motif TAAVTMTHTTTTAA KTTTTTTKTTTTTTDAAB KTTTTTTKTTTTTTWAABMTHTTTTAA Direction: Forward Position #: 14 Overlap #: 5 Alignment: -------------TAAVTMTHTTTTAA KTTTTTTKTTTTTTDAAB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Reverse Complement TTAAAADARVTTWAAAAAAYAAAAAAR WHAATTAAARAARAAAAAAA TTAAAADARVTTWAAAAWWAAAAAAAAAAAAAA Direction: Forward Position #: 14 Overlap #: 14 Alignment: TTAAAADARVTTWAAAAAAYAAAAAAR------ -------------WHAATTAAARAARAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Reverse Complement Reverse Complement TTTTTTTTTTTTTTWWTTTTWAABMTHTTTTAA GTTGACCTTTGACCTTT GTTGACCTTTKWYYTTTTTTTWWTTTTWAABMTHTTTTAA Direction: Forward Position #: 8 Overlap #: 10 Alignment: -------TTTTTTTTTTTTTTWWTTTTWAABMTHTTTTAA GTTGACCTTTGACCTTT----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Original Motif Reverse Complement GTTGACCTTTKWYYTTTTTTTWWTTTTWAABMTHTTTTAA ATTTTTTTTTTTTT GTTGACCTTTKWYYWTTTTTTTTTTTTTAABMTHTTTTAA Direction: Forward Position #: 15 Overlap #: 14 Alignment: GTTGACCTTTKWYYTTTTTTTWWTTTTWAABMTHTTTTAA --------------ATTTTTTTTTTTTT------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 46 Original Motif Reverse Complement GTTGACCTTTKWYYWTTTTTTTTTTTTTAABMTHTTTTAA TATKCTAAACCTAT TATKCTWRACCTWTKWYYWTTTTTTTTTTTTTAABMTHTTTTAA Direction: Forward Position #: 5 Overlap #: 10 Alignment: ----GTTGACCTTTKWYYWTTTTTTTTTTTTTAABMTHTTTTAA TATKCTAAACCTAT------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 13 Combined Motif Reverse Complement Reverse Complement TTAAAADARVTTAAAAAAAAAAAAAWKMWYAWAGGTKWAGYATA AAATAKATWTT TTAAAADARVTTAAAAAAAAAAWADATATTAWAGGTKWAGYATA Direction: Forward Position #: 20 Overlap #: 11 Alignment: TTAAAADARVTTAAAAAAAAAAAAAWKMWYAWAGGTKWAGYATA -------------------AAATAKATWTT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 12 Reverse Complement Reverse Complement TATKCTWYACCTWTAATATDTWTTTTTTTTTTAABMTHTTTTAA AAATGTGTTGT AAATGTRTTGTWYACCTWTAATATDTWTTTTTTTTTTAABMTHTTTTAA Direction: Forward Position #: 6 Overlap #: 6 Alignment: -----TATKCTWYACCTWTAATATDTWTTTTTTTTTTAABMTHTTTTAA AAATGTGTTGT-------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 12 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 12 AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif AAATGTGTTGT AGTGCTCCACTGTGGTGTCACAGT AGTGCTCMAMTGTGKTGTCACAGT Direction: Forward Position #: 8 Overlap #: 11 Alignment: -------AAATGTGTTGT------ AGTGCTCCACTGTGGTGTCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Reverse Complement ACTGTGACARCACAYTYGAGCACT CCACTGTGVTGTCACAGTGCTCCA CCACTGTGAYRWCACABTBSWSCACT Direction: Forward Position #: 3 Overlap #: 22 Alignment: --ACTGTGACARCACAYTYGAGCACT CCACTGTGVTGTCACAGTGCTCCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 13 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 13 Motif 45 Original Motif Reverse Complement AAWATRTATTT TTAAAAWAGASTTA TTAAAATAKABTTA Direction: Backward Position #: 2 Overlap #: 11 Alignment: --AAWATRTATTT- TTAAAAWAGASTTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Original Motif Reverse Complement TTAAAATAKABTTA TGAAAATATGTT TKAAAATATRTTTA Direction: Forward Position #: 1 Overlap #: 12 Alignment: TTAAAATAKABTTA TGAAAATATGTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 7 Reverse Complement Original Motif TAAAKATATTTTYA AAAATKCTATT WAAATDYWWTTTYA Direction: Forward Position #: 1 Overlap #: 11 Alignment: TAAAKATATTTTYA AAAATKCTATT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 33 Reverse Complement Original Motif TKAAAWWKDATTTW TTTAATGTYTTTWA TTWAATRTBWTTTA Direction: Forward Position #: 1 Overlap #: 14 Alignment: TKAAAWWKDATTTW TTTAATGTYTTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 12 Combined Motif Reverse Complement Original Motif TAAAWVAMATTWAA ACAACACATTT TAMAACACATTTAA Direction: Forward Position #: 2 Overlap #: 11 Alignment: TAAAWVAMATTWAA -ACAACACATTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 24 Original Motif Reverse Complement TAMAACACATTTAA TTWATGWCTTT TWHAWSACWTTTAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: TAMAACACATTTAA TTWATGWCTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Reverse Complement Reverse Complement TTAAAWGTSWTHWA TTYAAACATYTT TTHAAASWYHTTWA Direction: Forward Position #: 1 Overlap #: 12 Alignment: TTAAAWGTSWTHWA TTYAAACATYTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 10 Reverse Complement Original Motif TWAAHMWSTTTHAA AAAMATTGTTT WAAAATTGTTTHAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: TWAAHMWSTTTHAA AAAMATTGTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Original Motif Original Motif WAAAATTGTTTHAA AATAACAGATT AAWAACWGWTTHAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: WAAAATTGTTTHAA AATAACAGATT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Original Motif Original Motif AAWAACWGWTTHAA AAAAAAAAAAAAAT AAAAAMARAWWAAAT Direction: Forward Position #: 2 Overlap #: 13 Alignment: AAWAACWGWTTHAA- -AAAAAAAAAAAAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 14 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 14 Motif 33 Reverse Complement Original Motif TTATATYATTA TTTAATGTYTTTWA TTTWATRTYWTTAA Direction: Backward Position #: 2 Overlap #: 11 Alignment: --TTATATYATTA- TTTAATGTYTTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Reverse Complement Reverse Complement TTAAWKAKATWAAA WHAATTAAARAARAAAAAAA WHAATTAAARAARAAWWAAAKAKATWAAA Direction: Forward Position #: 16 Overlap #: 5 Alignment: ---------------TTAAWKAKATWAAA WHAATTAAARAARAAAAAAA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 23 Combined Motif Original Motif Reverse Complement WHAATTAAARAARAAWWAAAKAKATWAAA ATYAATGAAWACAT WHAATTAWHAAWGAAWAMATKAKATWAAA Direction: Forward Position #: 7 Overlap #: 14 Alignment: WHAATTAAARAARAAWWAAAKAKATWAAA ------ATYAATGAAWACAT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 29 Reverse Complement Original Motif TTTWATYTYATYTWTTCWTTHWTAATTDW ATTTATTGCTA WTTTATTKCTWYTWTTCWTTHWTAATTDW Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTTWATYTYATYTWTTCWTTHWTAATTDW ATTTATTGCTA------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Original Motif Reverse Complement WTTTATTKCTWYTWTTCWTTHWTAATTDW TWTTGACAYAGA WTTTATTKCTWYTWTTSAYWYAKAATTDW Direction: Forward Position #: 13 Overlap #: 12 Alignment: WTTTATTKCTWYTWTTCWTTHWTAATTDW ------------TWTTGACAYAGA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Original Motif Reverse Complement WTTTATTKCTWYTWTTSAYWYAKAATTDW TGAAAATATGTT TGAAAATWTRTTKCTWYTWTTSAYWYAKAATTDW Direction: Forward Position #: 6 Overlap #: 7 Alignment: -----WTTTATTKCTWYTWTTSAYWYAKAATTDW TGAAAATATGTT---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Original Motif Reverse Complement TGAAAATWTRTTKCTWYTWTTSAYWYAKAATTDW ATTTTTTTTTTTTT TGAAAATWWDTTTYTTTTTTTTAYWYAKAATTDW Direction: Forward Position #: 9 Overlap #: 14 Alignment: TGAAAATWTRTTKCTWYTWTTSAYWYAKAATTDW --------ATTTTTTTTTTTTT------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif TGAAAATWWDTTTYTTTTTTTTAYWYAKAATTDW KTTTTTTKTTTTTTDAAB TGAAAATWWDTTTYTTTTTTTTWYTBWTWWTTDAAB Direction: Forward Position #: 19 Overlap #: 16 Alignment: TGAAAATWWDTTTYTTTTTTTTAYWYAKAATTDW-- ------------------KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Original Motif Reverse Complement TGAAAATWWDTTTYTTTTTTTTWYTBWTWWTTDAAB TTTRKTTTHTTTTH TGAAAATWWDTTTYTTTTTTTKTTTTWTTTTTDAAB Direction: Forward Position #: 19 Overlap #: 14 Alignment: TGAAAATWWDTTTYTTTTTTTTWYTBWTWWTTDAAB ------------------TTTRKTTTHTTTTH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 45 Combined Motif Original Motif Original Motif TGAAAATWWDTTTYTTTTTTTKTTTTWTTTTTDAAB TAASTCTWTTTTAA TGAAAATWTAWBTCTWTTTTWATTTTWTTTTTDAAB Direction: Forward Position #: 9 Overlap #: 14 Alignment: TGAAAATWWDTTTYTTTTTTTKTTTTWTTTTTDAAB --------TAASTCTWTTTTAA-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 15 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Motif 46 Reverse Complement Original Motif TAGTTTYAKCTTT ATAGGTTTAGYATA ATAGKTTTAGCWTW Direction: Backward Position #: 1 Overlap #: 13 Alignment: -TAGTTTYAKCTTT ATAGGTTTAGYATA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Reverse Complement Original Motif WAWGCTAAAYCTAT AAAGGTCAAAGGTCAAC AAAGGTCAAAGSTMAAYCTAT Direction: Forward Position #: 8 Overlap #: 10 Alignment: -------WAWGCTAAAYCTAT AAAGGTCAAAGGTCAAC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 49 Original Motif Original Motif AAAGGTCAAAGSTMAAYCTAT AAAAAAAAAAAAAT AAAAAAAAAAARRTCAAAGSTMAAYCTAT Direction: Forward Position #: 9 Overlap #: 6 Alignment: --------AAAGGTCAAAGSTMAAYCTAT AAAAAAAAAAAAAT--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Reverse Complement Reverse Complement ATAGKTTRASCTTTGAKKTTTTTTTTTTT TTTRKTTTHTTTTH ATAGKTTRASCTTTGAKKTTTKTTTTTTTTTH Direction: Forward Position #: 19 Overlap #: 11 Alignment: ATAGKTTRASCTTTGAKKTTTTTTTTTTT--- ------------------TTTRKTTTHTTTTH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif ATAGKTTRASCTTTGAKKTTTKTTTTTTTTTH TTTTTTTKTTKTTTAATTHW ATAGKTTRASCTTTGAKKTTTTTTTTTTTTTTTAATTHW Direction: Forward Position #: 20 Overlap #: 13 Alignment: ATAGKTTRASCTTTGAKKTTTKTTTTTTTTTH------- -------------------TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif ATAGKTTRASCTTTGAKKTTTTTTTTTTTTTTTAATTHW KTTTTTTKTTTTTTDAAB ATAGKTTRASCTTTGAKKTTTTTTTTTTTTTTTWWTTDAAB Direction: Forward Position #: 24 Overlap #: 16 Alignment: ATAGKTTRASCTTTGAKKTTTTTTTTTTTTTTTAATTHW-- -----------------------KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 23 Original Motif Reverse Complement ATAGKTTRASCTTTGAKKTTTTTTTTTTTTTTTWWTTDAAB ATYAATGAAWACAT ATYAATGAATASRTTRASCTTTGAKKTTTTTTTTTTTTTTTWWTTDAAB Direction: Forward Position #: 9 Overlap #: 6 Alignment: --------ATAGKTTRASCTTTGAKKTTTTTTTTTTTTTTTWWTTDAAB ATYAATGAAWACAT----------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 45 Original Motif Original Motif ATYAATGAATASRTTRASCTTTGAKKTTTTTTTTTTTTTTTWWTTDAAB TAASTCTWTTTTAA TAASTMTHWWTKAATASRTTRASCTTTGAKKTTTTTTTTTTTTTTTWWTTDAAB Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----ATYAATGAATASRTTRASCTTTGAKKTTTTTTTTTTTTTTTWWTTDAAB TAASTCTWTTTTAA---------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Original Motif Original Motif TAASTMTHWWTKAATASRTTRASCTTTGAKKTTTTTTTTTTTTTTTWWTTDAAB CWGAGCCAYCTYTC CWGAGCYAMCTCTYWWTKAATASRTTRASCTTTGAKKTTTTTTTTTTTTTTTWWTTDAAB Direction: Forward Position #: 7 Overlap #: 8 Alignment: ------TAASTMTHWWTKAATASRTTRASCTTTGAKKTTTTTTTTTTTTTTTWWTTDAAB CWGAGCCAYCTYTC---------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 22 Original Motif Original Motif CWGAGCYAMCTCTYWWTKAATASRTTRASCTTTGAKKTTTTTTTTTTTTTTTWWTTDAAB TTTATGGTGAGCAT TTTATGSTGAGCHWMCTCTYWWTKAATASRTTRASCTTTGAKKTTTTTTTTTTTTTTTWWTTDAAB Direction: Forward Position #: 7 Overlap #: 8 Alignment: ------CWGAGCYAMCTCTYWWTKAATASRTTRASCTTTGAKKTTTTTTTTTTTTTTTWWTTDAAB TTTATGGTGAGCAT---------------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 16 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 TGGAGCACTGTGACAcCACAGTGg Original Motif Original Motif TCTKTGTCAAWA TGGAGCACTGTGACAVCACAGTGG TGGAGCWCTGTGWCAAHACAGTGG Direction: Forward Position #: 7 Overlap #: 12 Alignment: ------TCTKTGTCAAWA------ TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement TGGAGCWCTGTGWCAAHACAGTGG AGTGSWSCACTGTGAMAMCACAGTG AGTGGAGCACTGTGWCAMCACAGTGG Direction: Forward Position #: 3 Overlap #: 23 Alignment: --TGGAGCWCTGTGWCAAHACAGTGG AGTGSWSCACTGTGAMAMCACAGTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Reverse Complement Reverse Complement CCACTGTGYTGWCACAGTGCTCCACT GGAGCACTGTGACACCACA GGASCACTGTGWYRHCACAGTGCTCCACT Direction: Forward Position #: 4 Overlap #: 16 Alignment: ---CCACTGTGYTGWCACAGTGCTCCACT GGAGCACTGTGACACCACA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif AGTGGAGCACTGTGDKKWCACAGTGSTCC AGTGCTCCACTGTGGTGTCACAGT AGTGSWSCACTGTGKTGTCACAGTGSTCC Direction: Forward Position #: 1 Overlap #: 24 Alignment: AGTGGAGCACTGTGDKKWCACAGTGSTCC AGTGCTCCACTGTGGTGTCACAGT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Original Motif AGTGSWSCACTGTGKTGTCACAGTGSTCC AMTGTGACACCACAGT AVTGYKMCACYRYRGTGTCACAGTGSTCC Direction: Forward Position #: 1 Overlap #: 16 Alignment: AGTGSWSCACTGTGKTGTCACAGTGSTCC AMTGTGACACCACAGT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Reverse Complement Original Motif GGASCACTGTGACACKMKMGTGYYMCAVT KTTTTTTKTTTTTTDAAB KTTTTTTKTTTTTTGRASCACTGTGACACKMKMGTGYYMCAVT Direction: Forward Position #: 15 Overlap #: 4 Alignment: --------------GGASCACTGTGACACKMKMGTGYYMCAVT KTTTTTTKTTTTTTDAAB------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Reverse Complement AVTGYKMCACYRYRGTGTCACAGTGSTKCAAAAAAYAAAAAAR WHAATTAAARAARAAAAAAA AVTGYKMCACYRYRGTGTCACAGTGSTKHHAAWWAHAAAAAAAAAAAA Direction: Forward Position #: 29 Overlap #: 15 Alignment: AVTGYKMCACYRYRGTGTCACAGTGSTKCAAAAAAYAAAAAAR----- ----------------------------WHAATTAAARAARAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Original Motif TTTTTTTTTTTTHTWWTTHHRASCACTGTGACACKMKMGTGYYMCAVT BTRGGDCARAGGKCA TTTTTTTTTTTTHTWWTBTDRRBCAVWGKKMMACKMKMGTGYYMCAVT Direction: Forward Position #: 18 Overlap #: 15 Alignment: TTTTTTTTTTTTHTWWTTHHRASCACTGTGACACKMKMGTGYYMCAVT -----------------BTRGGDCARAGGKCA---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Original Motif Reverse Complement TTTTTTTTTTTTHTWWTBTDRRBCAVWGKKMMACKMKMGTGYYMCAVT GTTGACCTTTGACCTTT GTTGACCTTTKWYYTTTTTHTWWTBTDRRBCAVWGKKMMACKMKMGTGYYMCAVT Direction: Forward Position #: 8 Overlap #: 10 Alignment: -------TTTTTTTTTTTTHTWWTBTDRRBCAVWGKKMMACKMKMGTGYYMCAVT GTTGACCTTTGACCTTT-------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 33 Original Motif Original Motif GTTGACCTTTKWYYTTTTTHTWWTBTDRRBCAVWGKKMMACKMKMGTGYYMCAVT TTTAATGTYTTTWA TTTAATGTYKTTDACCTTTKWYYTTTTTHTWWTBTDRRBCAVWGKKMMACKMKMGTGYYMCAVT Direction: Forward Position #: 10 Overlap #: 5 Alignment: ---------GTTGACCTTTKWYYTTTTTHTWWTBTDRRBCAVWGKKMMACKMKMGTGYYMCAVT TTTAATGTYTTTWA-------------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 17 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 17 NR1H2RXRA Reverse Complement Original Motif GAGGTCAGAAG AAAGGTCAAAGGTCAAC ARAGGTCARARGTCAAC Direction: Backward Position #: 6 Overlap #: 11 Alignment: -GAGGTCAGAAG----- AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Original Motif ARAGGTCARARGTCAAC BTRGGDCARAGGKCA VDAGGTCARAGGTCAAC Direction: Forward Position #: 1 Overlap #: 15 Alignment: ARAGGTCARARGTCAAC BTRGGDCARAGGKCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 24 Reverse Complement Reverse Complement GTTGACCTKTGACCTHB TTWATGWCTTT TTDWTGACYTTTGACCTHB Direction: Forward Position #: 3 Overlap #: 9 Alignment: --GTTGACCTKTGACCTHB TTWATGWCTTT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 18 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 18 NR1H2RXRA Original Motif Original Motif CAAAGTCCAGC AAAGGTCAAAGGTCAAC AAAGGTCAAAGKYCARC Direction: Forward Position #: 7 Overlap #: 11 Alignment: ------CAAAGTCCAGC AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Reverse Complement Original Motif GMTGKYCTTTGACCTTT CAGTGCTCCACTGTGBT CAGTGCTCCACKVTGKTCTTTGACCTTT Direction: Forward Position #: 12 Overlap #: 6 Alignment: -----------GMTGKYCTTTGACCTTT CAGTGCTCCACTGTGBT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Original Motif Original Motif CAGTGCTCCACKVTGKTCTTTGACCTTT CAHCACAGTGGAGCACT CAHCACAGTGSWSCACTVTGKTCTTTGACCTTT Direction: Forward Position #: 6 Overlap #: 12 Alignment: -----CAGTGCTCCACKVTGKTCTTTGACCTTT CAHCACAGTGGAGCACT---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif CAHCACAGTGSWSCACTVTGKTCTTTGACCTTT AGTGCTCCACTGTGGTGTCACAGT AGTGCWCCACWGTGSTGYMMYATKKTCTTTGACCTTT Direction: Forward Position #: 5 Overlap #: 20 Alignment: ----CAHCACAGTGSWSCACTVTGKTCTTTGACCTTT AGTGCTCCACTGTGGTGTCACAGT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement AGTGCWCCACWGTGSTGYMMYATKKTCTTTGACCTTT AGTGSWSCACTGTGAMAMCACAGTG AGTGCWSCACTGTGVHVHCACAKTGTCTTTGACCTTT Direction: Forward Position #: 1 Overlap #: 25 Alignment: AGTGCWCCACWGTGSTGYMMYATKKTCTTTGACCTTT AGTGSWSCACTGTGAMAMCACAGTG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement AGTGCWSCACTGTGVHVHCACAKTGTCTTTGACCTTT CCACTGTGVTGTCACAGTGCTCCA CCACTRKKGYDBCACWGTGCTVCMACAKTGTCTTTGACCTTT Direction: Forward Position #: 6 Overlap #: 19 Alignment: -----AGTGCWSCACTGTGVHVHCACAKTGTCTTTGACCTTT CCACTGTGVTGTCACAGTGCTCCA------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Reverse Complement Original Motif AAAGGTCAAAGACAYTGTYGVAGCACWGTGVHMCRRMAGTGG TGTGGTGTCACAGTGCTCC AAAGGTCAAAGACWBTGKTGBMACASTGYKVCMCRRMAGTGG Direction: Forward Position #: 14 Overlap #: 19 Alignment: AAAGGTCAAAGACAYTGTYGVAGCACWGTGVHMCRRMAGTGG -------------TGTGGTGTCACAGTGCTCC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif AAAGGTCAAAGACWBTGKTGBMACASTGYKVCMCRRMAGTGG TTCAGCACCATGGACAGCKCC TTCAGCACMADGGWCARMGMCWBTGKTGBMACASTGYKVCMCRRMAGTGG Direction: Forward Position #: 9 Overlap #: 13 Alignment: --------AAAGGTCAAAGACWBTGKTGBMACASTGYKVCMCRRMAGTGG TTCAGCACCATGGACAGCKCC----------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Reverse Complement Original Motif CCACTRKKGYGVYMCASTGTRVCARCABWGRCYKTGWCCDTRGTGCTGAA AAAGRTMAAACTA AAAGRTMMMACTAKKGYGVYMCASTGTRVCARCABWGRCYKTGWCCDTRGTGCTGAA Direction: Forward Position #: 8 Overlap #: 6 Alignment: -------CCACTRKKGYGVYMCASTGTRVCARCABWGRCYKTGWCCDTRGTGCTGAA AAAGRTMAAACTA-------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 4 Original Motif Original Motif AAAGRTMMMACTAKKGYGVYMCASTGTRVCARCABWGRCYKTGWCCDTRGTGCTGAA HAAAAHAAARMAAA HAAAAGAWAAMAMWAKKGYGVYMCASTGTRVCARCABWGRCYKTGWCCDTRGTGCTGAA Direction: Forward Position #: 3 Overlap #: 12 Alignment: --AAAGRTMMMACTAKKGYGVYMCASTGTRVCARCABWGRCYKTGWCCDTRGTGCTGAA HAAAAHAAARMAAA--------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 19 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Motif 43 Reverse Complement Reverse Complement CTTTCTCT TGCCTTTCYTT TGCCTTTCTYT Direction: Backward Position #: 1 Overlap #: 8 Alignment: ---CTTTCTCT TGCCTTTCYTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 21 Reverse Complement Reverse Complement AKAGAAAGGCA TTYGGAAAGCAG WTHGRAARGCAG Direction: Forward Position #: 1 Overlap #: 11 Alignment: AKAGAAAGGCA- TTYGGAAAGCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 44 Reverse Complement Reverse Complement CTGCKTTKCHAW TTCTTYCATT TTCTKCBWTTCHAW Direction: Forward Position #: 3 Overlap #: 8 Alignment: --CTGCKTTKCHAW TTCTTYCATT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Reverse Complement Reverse Complement WTDGAAWBGYAGAA TWTTGACAYAGA TWTTGAMABRBAGAA Direction: Forward Position #: 2 Overlap #: 11 Alignment: -WTDGAAWBGYAGAA TWTTGACAYAGA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Reverse Complement Reverse Complement TTCTBKBTYTCAAWA TAGTTTYAKCTTT TAGTTYTHKCTTTCAAWA Direction: Forward Position #: 4 Overlap #: 10 Alignment: ---TTCTBKBTYTCAAWA TAGTTTYAKCTTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 49 Reverse Complement Reverse Complement TWTTGAAAGRBAKAACTA ATTTTTTTTTTTTT ATTTTTTTTTTTTTGAAAGRBAKAACTA Direction: Forward Position #: 11 Overlap #: 4 Alignment: ----------TWTTGAAAGRBAKAACTA ATTTTTTTTTTTTT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 41 Combined Motif Reverse Complement Reverse Complement TAGTTYTHKCTTTCAAAAAAAAAAAAAT TTTCCTCCA TAGTTYTTTCYTYCAAAAAAAAAAAAAT Direction: Forward Position #: 7 Overlap #: 9 Alignment: TAGTTYTHKCTTTCAAAAAAAAAAAAAT ------TTTCCTCCA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Original Motif ATTTTTTTTTTTTTGKAKGAAAKAACTA TTTTTTTKTTKTTTAATTHW ATTTTTTTTTTTTTGTWTRAWWBAACTA Direction: Forward Position #: 5 Overlap #: 20 Alignment: ATTTTTTTTTTTTTGKAKGAAAKAACTA ----TTTTTTTKTTKTTTAATTHW---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Original Motif Reverse Complement ATTTTTTTTTTTTTGTWTRAWWBAACTA GTTGACCTTTGACCTTT GTTGACCTTTGAYYTTTTTTTTTTTGTWTRAWWBAACTA Direction: Forward Position #: 12 Overlap #: 6 Alignment: -----------ATTTTTTTTTTTTTGTWTRAWWBAACTA GTTGACCTTTGACCTTT---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Original Motif Reverse Complement GTTGACCTTTGAYYTTTTTTTTTTTGTWTRAWWBAACTA TTTRKTTTHTTTTH GTTGACCTTTGAYTTTDTTTTTTTTKTWTRAWWBAACTA Direction: Forward Position #: 14 Overlap #: 14 Alignment: GTTGACCTTTGAYYTTTTTTTTTTTGTWTRAWWBAACTA -------------TTTRKTTTHTTTTH------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 20 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 20 CTCF Original Motif Reverse Complement TCCTCCTGGAA BMSMGCCYMCTKSTGGMHM BMSMGCCTCCTCCTGGAAM Direction: Forward Position #: 8 Overlap #: 11 Alignment: -------TCCTCCTGGAA- BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 47 Reverse Complement Original Motif YTTCCAGGAGGAGGCRSYV YGCCACCTDSTGGY YGCCHCCWGSWGGMGGCRSYV Direction: Forward Position #: 3 Overlap #: 12 Alignment: --YTTCCAGGAGGAGGCRSYV YGCCACCTDSTGGY------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 21 Combined Motif Reverse Complement Original Motif BMSMGCCYCCWSCWGGHGGCK CTGCTTTCCMAA BMSMGCCYCCWSCWGGCTGCTTTCCMAA Direction: Forward Position #: 17 Overlap #: 5 Alignment: BMSMGCCYCCWSCWGGHGGCK------- ----------------CTGCTTTCCMAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 23 Reverse Complement Original Motif TTYGGAAAGCAGCCWGSWGGMGGCRSYV ATGTWTTCATTMAT ATGTWTTCATTHRKAAAGCAGCCWGSWGGMGGCRSYV Direction: Forward Position #: 10 Overlap #: 5 Alignment: ---------TTYGGAAAGCAGCCWGSWGGMGGCRSYV ATGTWTTCATTMAT----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Reverse Complement Original Motif BMSMGCCYCCWSCWGGCTGCTTTYKDAATGAAWACAT HSCACGTGGC HSCACGTGGCGCCYCCWSCWGGCTGCTTTYKDAATGAAWACAT Direction: Forward Position #: 7 Overlap #: 4 Alignment: ------BMSMGCCYCCWSCWGGCTGCTTTYKDAATGAAWACAT HSCACGTGGC--------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 27 Combined Motif Reverse Complement Original Motif ATGTWTTCATTHYKAAAGCAGCCWGSWGGMGGCGCCACGTGSD ATTCTGTRAAG ATGTWTTCATTCTGWAARSAGCCWGSWGGMGGCGCCACGTGSD Direction: Forward Position #: 9 Overlap #: 11 Alignment: ATGTWTTCATTHYKAAAGCAGCCWGSWGGMGGCGCCACGTGSD --------ATTCTGTRAAG------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Reverse Complement Original Motif HSCACGTGGCGCCYCCWSCWGGCTSKTTWCAGAATGAAWACAT VGCACGTGGH VSCACGTGGCGCCYCCWSCWGGCTSKTTWCAGAATGAAWACAT Direction: Forward Position #: 1 Overlap #: 10 Alignment: HSCACGTGGCGCCYCCWSCWGGCTSKTTWCAGAATGAAWACAT VGCACGTGGH--------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif VSCACGTGGCGCCYCCWSCWGGCTSKTTWCAGAATGAAWACAT TTCAGCACCATGGACAGCKCC TTCAGCACCACGKRSAGCBHCCWSCWGGCTSKTTWCAGAATGAAWACAT Direction: Forward Position #: 7 Overlap #: 15 Alignment: ------VSCACGTGGCGCCYCCWSCWGGCTSKTTWCAGAATGAAWACAT TTCAGCACCATGGACAGCKCC---------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 30 Reverse Complement Original Motif ATGTWTTCATTCTGWAAYSAGCCWGSWGGDBGCTSKYCGTGGTGCTGAA TTGCTGCTTTT TTGMTGYTTTYATTCTGWAAYSAGCCWGSWGGDBGCTSKYCGTGGTGCTGAA Direction: Forward Position #: 4 Overlap #: 8 Alignment: ---ATGTWTTCATTCTGWAAYSAGCCWGSWGGDBGCTSKYCGTGGTGCTGAA TTGCTGCTTTT----------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 22 Reverse Complement Original Motif TTCAGCACCACGKRSAGCBHCCWSCWGGCTSKTTWCAGAATKAAAKCAYCAA TTTATGGTGAGCAT TTTATGGTSAGCAYCACGKRSAGCBHCCWSCWGGCTSKTTWCAGAATKAAAKCAYCAA Direction: Forward Position #: 7 Overlap #: 8 Alignment: ------TTCAGCACCACGKRSAGCBHCCWSCWGGCTSKTTWCAGAATKAAAKCAYCAA TTTATGGTGAGCAT-------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 21 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 21 Motif 22 Original Motif Reverse Complement CTGCTTTCCMAA ATGCTCACCATAAA MTGCTYWCCAWAAA Direction: Backward Position #: 3 Overlap #: 12 Alignment: CTGCTTTCCMAA-- ATGCTCACCATAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Reverse Complement Original Motif TTTWTGGWKAGCAY KTTTTTTKTTTTTTDAAB KTTTTTTTTTTTKKWDAGCAY Direction: Forward Position #: 8 Overlap #: 11 Alignment: -------TTTWTGGWKAGCAY KTTTTTTKTTTTTTDAAB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Reverse Complement KTGCTDWYYAAAAAAAAAAAR GGYGCTGTCCATGGTGCTGAA GGYGCTGTCCDTGSTDHYBAAAAAAAAAAAR Direction: Forward Position #: 11 Overlap #: 11 Alignment: ----------KTGCTDWYYAAAAAAAAAAAR GGYGCTGTCCATGGTGCTGAA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Reverse Complement GGYGCTGTCCDTGSTDHYBAAAAAAAAAAAR ACTGTGGTGTCACART ACKGTGSTGTCMCWGBTDHYBAAAAAAAAAAAR Direction: Forward Position #: 3 Overlap #: 14 Alignment: --GGYGCTGTCCDTGSTDHYBAAAAAAAAAAAR ACTGTGGTGTCACART----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement ACKGTGSTGTCMCWGBTDHYBAAAAAAAAAAAR ACTGTGACACCACAGTGGAGCACT ACTGTGAYRYCACAGTKGAKCAMWAAAAAAAAR Direction: Forward Position #: 1 Overlap #: 24 Alignment: ACKGTGSTGTCMCWGBTDHYBAAAAAAAAAAAR ACTGTGACACCACAGTGGAGCACT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement ACTGTGAYRYCACAGTKGAKCAMWAAAAAAAAR CCACTGTGVTGTCACAGTGCTCCA CCACTGTGVTGTCACAGTGSWSCAMWAAAAAAAAR Direction: Forward Position #: 3 Overlap #: 22 Alignment: --ACTGTGAYRYCACAGTKGAKCAMWAAAAAAAAR CCACTGTGVTGTCACAGTGCTCCA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Reverse Complement CCACTGTGVTGTCACAGTGSWSCAMWAAAAAAAAR GGAGCACTGTGACACCACA GGASCACTGTGAYRYCACAGTGSWSCAMWAAAAAAAAR Direction: Forward Position #: 4 Overlap #: 16 Alignment: ---CCACTGTGVTGTCACAGTGSWSCAMWAAAAAAAAR GGAGCACTGTGACACCACA------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 23 Reverse Complement Original Motif KTTTTTTTTWYTGSWSCACTGTGMKKTCACAGTGSTCC ATGTWTTCATTMAT ATGTTTTYWTTHATGSWSCACTGTGMKKTCACAGTGSTCC Direction: Forward Position #: 3 Overlap #: 12 Alignment: --KTTTTTTTTWYTGSWSCACTGTGMKKTCACAGTGSTCC ATGTWTTCATTMAT-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 46 Original Motif Original Motif ATGTTTTYWTTHATGSWSCACTGTGMKKTCACAGTGSTCC ATAGGTTTAGYATA ATAKGTTTWSHWTAATGSWSCACTGTGMKKTCACAGTGSTCC Direction: Forward Position #: 3 Overlap #: 12 Alignment: --ATGTTTTYWTTHATGSWSCACTGTGMKKTCACAGTGSTCC ATAGGTTTAGYATA---------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 22 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 22 Motif 23 Original Motif Reverse Complement TTTATGGTGAGCAT ATYAATGAAWACAT WTTAWKGWRARCAT Direction: Backward Position #: 1 Overlap #: 14 Alignment: TTTATGGTGAGCAT ATYAATGAAWACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 46 Reverse Complement Original Motif ATGKTKWCYWTAAW ATAGGTTTAGYATA ATAKGTTTASYATAAW Direction: Forward Position #: 3 Overlap #: 12 Alignment: --ATGKTKWCYWTAAW ATAGGTTTAGYATA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 33 Original Motif Original Motif ATAKGTTTASYATAAW TTTAATGTYTTTWA TTWWATGTTTWBHATAAW Direction: Forward Position #: 3 Overlap #: 12 Alignment: --ATAKGTTTASYATAAW TTTAATGTYTTTWA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 21 Reverse Complement Original Motif WTTATHVWAAACATWWAA CTGCTTTCCMAA CTGCTTTMYMAAAAACATWWAA Direction: Forward Position #: 5 Overlap #: 8 Alignment: ----WTTATHVWAAACATWWAA CTGCTTTCCMAA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Reverse Complement Original Motif TTWWATGTTTTTYKYAAAGCAG AAAGGTCAAAGGTCAAC AAAGGTYAAAKGTYWWYYKYAAAGCAG Direction: Forward Position #: 6 Overlap #: 12 Alignment: -----TTWWATGTTTTTYKYAAAGCAG AAAGGTCAAAGGTCAAC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Original Motif Original Motif AAAGGTYAAAKGTYWWYYKYAAAGCAG AAAGRTMAAACTA AAAGGTHAAASKWYWWYYKYAAAGCAG Direction: Forward Position #: 1 Overlap #: 13 Alignment: AAAGGTYAAAKGTYWWYYKYAAAGCAG AAAGRTMAAACTA-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 31 Reverse Complement Original Motif CTGCTTTKYMMWWKWYSTTTDACCTTT TTGTTGATTTT TTGYTGMTTTTYMMWWKWYSTTTDACCTTT Direction: Forward Position #: 4 Overlap #: 8 Alignment: ---CTGCTTTKYMMWWKWYSTTTDACCTTT TTGTTGATTTT------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Original Motif Reverse Complement TTGYTGMTTTTYMMWWKWYSTTTDACCTTT CTTKACAGAAT CTTTRCWGAWTTTYMMWWKWYSTTTDACCTTT Direction: Forward Position #: 3 Overlap #: 9 Alignment: --TTGYTGMTTTTYMMWWKWYSTTTDACCTTT CTTKACAGAAT--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 17 Reverse Complement Reverse Complement AAAGGTHAAASKWYWWYYKAAAWTCWGKAAAG GAGGTCAGAAG GAGGTCARARGTHAAASKWYWWYYKAAAWTCWGKAAAG Direction: Forward Position #: 7 Overlap #: 5 Alignment: ------AAAGGTHAAASKWYWWYYKAAAWTCWGKAAAG GAGGTCAGAAG--------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 24 Original Motif Original Motif GAGGTCARARGTHAAASKWYWWYYKAAAWTCWGKAAAG AAAGWCATWAA RARGTCAKAARTHAAASKWYWWYYKAAAWTCWGKAAAG Direction: Forward Position #: 1 Overlap #: 11 Alignment: GAGGTCARARGTHAAASKWYWWYYKAAAWTCWGKAAAG AAAGWCATWAA--------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 23 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 23 Motif 49 Original Motif Reverse Complement ATGTWTTCATTMAT ATTTTTTTTTTTTT ATKTTTTYWTTHWT Direction: Backward Position #: 1 Overlap #: 14 Alignment: ATGTWTTCATTMAT ATTTTTTTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Reverse Complement Reverse Complement AWHAAWKAAAAYAT WHAATTAAARAARAAAAAAA WHAATTAAARAARAAAAAAAKAAAAYAT Direction: Forward Position #: 15 Overlap #: 6 Alignment: --------------AWHAAWKAAAAYAT WHAATTAAARAARAAAAAAA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif ATKTTTTYTTTTTTTKTTKTTTAATTDW KTTTTTTKTTTTTTDAAB ATKTTTTYTTTTTTTKTTTTTTDWTTTTTDAAB Direction: Forward Position #: 16 Overlap #: 13 Alignment: ATKTTTTYTTTTTTTKTTKTTTAATTDW----- ---------------KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 33 Combined Motif Original Motif Original Motif ATKTTTTYTTTTTTTKTTTTTTDWTTTTTDAAB TTTAATGTYTTTWA ATKTTTTYTTTTTTTKTTTTTWATKTTTTTAAB Direction: Forward Position #: 19 Overlap #: 14 Alignment: ATKTTTTYTTTTTTTKTTTTTTDWTTTTTDAAB ------------------TTTAATGTYTTTWA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 22 Reverse Complement Reverse Complement BTTAAAAAYATWAAAAARAAAAAAAKAAAAYAT ATGCTCACCATAAA ATGCTCACCWTAAAAAYATWAAAAARAAAAAAAKAAAAYAT Direction: Forward Position #: 9 Overlap #: 6 Alignment: --------BTTAAAAAYATWAAAAARAAAAAAAKAAAAYAT ATGCTCACCATAAA--------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 45 Reverse Complement Original Motif ATKTTTTYTTTTTTTKTTTTTWATKTTTTTAWGGTGAGCAT TAASTCTWTTTTAA TAWBTYTTTTTTWWTTKTTTTTWATKTTTTTAWGGTGAGCAT Direction: Forward Position #: 2 Overlap #: 13 Alignment: -ATKTTTTYTTTTTTTKTTTTTWATKTTTTTAWGGTGAGCAT TAASTCTWTTTTAA---------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Reverse Complement Original Motif ATGCTCACCWTAAAAAYATWAAAAARAAWWAAAAAAKABWTA HAAAAHAAARMAAA ATGCTCACCWTAAAAAYATWAAAAADAAAWAAAAAARAHWTA Direction: Forward Position #: 26 Overlap #: 14 Alignment: ATGCTCACCWTAAAAAYATWAAAAARAAWWAAAAAAKABWTA -------------------------HAAAAHAAARMAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Combined Motif Original Motif Original Motif ATGCTCACCWTAAAAAYATWAAAAADAAAWAAAAAARAHWTA AAAGRTMAAACTA ATGCTCACCWTAAAAAYATWAAAAAAARATMAAAMWAAHWTA Direction: Forward Position #: 25 Overlap #: 13 Alignment: ATGCTCACCWTAAAAAYATWAAAAADAAAWAAAAAARAHWTA ------------------------AAAGRTMAAACTA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 46 Original Motif Reverse Complement ATGCTCACCWTAAAAAYATWAAAAAAARATMAAAMWAAHWTA TATKCTAAACCTAT TATGCTMAMCMTAWAAAYATWAAAAAAARATMAAAMWAAHWTA Direction: Forward Position #: 2 Overlap #: 13 Alignment: -ATGCTCACCWTAAAAAYATWAAAAAAARATMAAAMWAAHWTA TATKCTAAACCTAT----------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 21 Original Motif Original Motif TATGCTMAMCMTAWAAAYATWAAAAAAARATMAAAMWAAHWTA CTGCTTTCCMAA CTGYWTKCYMAACMTAWAAAYATWAAAAAAARATMAAAMWAAHWTA Direction: Forward Position #: 4 Overlap #: 9 Alignment: ---TATGCTMAMCMTAWAAAYATWAAAAAAARATMAAAMWAAHWTA CTGCTTTCCMAA---------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 24 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 24 Motif 33 Original Motif Reverse Complement AAAGWCATWAA TWAAAKACATTAAA TWAAAGACATTAAA Direction: Backward Position #: 2 Overlap #: 11 Alignment: --AAAGWCATWAA- TWAAAKACATTAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 31 Reverse Complement Original Motif TTTAATGTCTTTWA TTGTTGATTTT TTKTTRATKTYTTTWA Direction: Forward Position #: 3 Overlap #: 9 Alignment: --TTTAATGTCTTTWA TTGTTGATTTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Original Motif Reverse Complement TTKTTRATKTYTTTWA ATTTTTTTTTTTTT TWTTTTWTTTTTTTTA Direction: Forward Position #: 2 Overlap #: 14 Alignment: TTKTTRATKTYTTTWA -ATTTTTTTTTTTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 30 Combined Motif Reverse Complement Reverse Complement TAAAAAAAAWAAAAWA AAAAGCAGCAA TAAAAARMADMAAAWA Direction: Forward Position #: 3 Overlap #: 11 Alignment: TAAAAAAAAWAAAAWA --AAAAGCAGCAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 13 Reverse Complement Reverse Complement TWTTTRHTRMTTTTTA AAATAKATWTT AAATAKWTDTTRMTTTTTA Direction: Forward Position #: 4 Overlap #: 8 Alignment: ---TWTTTRHTRMTTTTTA AAATAKATWTT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Reverse Complement TAAAAARMAADAWRTATTT BTTHAAAAAAYAAAAAAR TWWAAAAAAAHAAAWAWWT Direction: Forward Position #: 1 Overlap #: 18 Alignment: TAAAAARMAADAWRTATTT BTTHAAAAAAYAAAAAAR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Original Motif Original Motif TWWAAAAAAAHAAAWAWWT HAAAAHAAARMAAA TWWAAAAMAAAAMAAAWWT Direction: Forward Position #: 3 Overlap #: 14 Alignment: TWWAAAAAAAHAAAWAWWT --HAAAAHAAARMAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Original Motif AWWTTTYTTTTYTTTTWWA TTTTTTTKTTKTTTAATTHW AWWTTTYTTTTTTTTTTTDTTTAATTHW Direction: Forward Position #: 9 Overlap #: 11 Alignment: AWWTTTYTTTTYTTTTWWA--------- --------TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Combined Motif Reverse Complement Original Motif WHAATTAAADAAAAAAAAAAAMAAAWWT AAAGRTMAAACTA WHAATTAAAGAWAAAACWAAAMAAAWWT Direction: Forward Position #: 7 Overlap #: 13 Alignment: WHAATTAAADAAAAAAAAAAAMAAAWWT ------AAAGRTMAAACTA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM1 Original Motif Original Motif WHAATTAAAGAWAAAACWAAAMAAAWWT CACACACACACWCACACA CACACACACAYAVWYAMAGAWAAAACWAAAMAAAWWT Direction: Forward Position #: 10 Overlap #: 9 Alignment: ---------WHAATTAAAGAWAAAACWAAAMAAAWWT CACACACACACWCACACA------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 25 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 25 Motif 7 Original Motif Reverse Complement AATAACAGATT AATAGYATTTT AATARCAKWTT Direction: Backward Position #: 1 Overlap #: 11 Alignment: AATAACAGATT AATAGYATTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 49 Reverse Complement Original Motif AAWYTGKTATT AAAAAAAAAAAAAT AAAAAAAAAAAAHTGKTATT Direction: Forward Position #: 10 Overlap #: 5 Alignment: ---------AAWYTGKTATT AAAAAAAAAAAAAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 13 Combined Motif Original Motif Reverse Complement AAAAAAAAAAAAHTGKTATT AAATAKATWTT AAAAAAWADAWWTTGKTATT Direction: Forward Position #: 4 Overlap #: 11 Alignment: AAAAAAAAAAAAHTGKTATT ---AAATAKATWTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 45 Combined Motif Original Motif Reverse Complement AAAAAAWADAWWTTGKTATT TTAAAAWAGASTTA AAAAWWAAAAWAKWGTTATT Direction: Forward Position #: 5 Overlap #: 14 Alignment: AAAAAAWADAWWTTGKTATT ----TTAAAAWAGASTTA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Original Motif Reverse Complement AAAAWWAAAAWAKWGTTATT CTTKACAGAAT CTTKAMARAATAAAAWAKWGTTATT Direction: Forward Position #: 6 Overlap #: 6 Alignment: -----AAAAWWAAAAWAKWGTTATT CTTKACAGAAT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 33 Combined Motif Original Motif Reverse Complement CTTKAMARAATAAAAWAKWGTTATT TWAAAKACATTAAA CTTDAAADAMWWWAAAAKWGTTATT Direction: Forward Position #: 3 Overlap #: 14 Alignment: CTTKAMARAATAAAAWAKWGTTATT --TWAAAKACATTAAA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 Combined Motif Original Motif Reverse Complement CTTDAAADAMWWWAAAAKWGTTATT AAACAATYTTT CTTDAAABAATTTWWAAKWGTTATT Direction: Forward Position #: 5 Overlap #: 11 Alignment: CTTDAAADAMWWWAAAAKWGTTATT ----AAACAATYTTT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif AATAACWYTTWWAAATTBTTTDAAG AGTGCTCCACTGTGGTGTCACAGT AGTGCTCCACTGTGGWRTMACABTTWWAAATTBTTTDAAG Direction: Forward Position #: 16 Overlap #: 9 Alignment: ---------------AATAACWYTTWWAAATTBTTTDAAG AGTGCTCCACTGTGGTGTCACAGT---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Reverse Complement Original Motif CTTDAAABAATTTWWAABTGTYAKWCCACAGTGGAGCACT AAAGRTMAAACTA AAASDTHAAACWATTTWWAABTGTYAKWCCACAGTGGAGCACT Direction: Forward Position #: 4 Overlap #: 10 Alignment: ---CTTDAAABAATTTWWAABTGTYAKWCCACAGTGGAGCACT AAAGRTMAAACTA------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 11 Combined Motif Reverse Complement Original Motif AGTGCTCCACTGTGGWRTMACABTTWWAAATWGTTTHADSTTT AAMATGTTTMAA AGTGCTCCACTGTGGWAWMAYRTTTHAAAATWGTTTHADSTTT Direction: Forward Position #: 17 Overlap #: 12 Alignment: AGTGCTCCACTGTGGWRTMACABTTWWAAATWGTTTHADSTTT ----------------AAMATGTTTMAA--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 26 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Motif 23 Original Motif Original Motif CTGTTTTWAT ATGTWTTCATTMAT MTGTTTTHATTMAT Direction: Backward Position #: 5 Overlap #: 10 Alignment: CTGTTTTWAT---- ATGTWTTCATTMAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Reverse Complement Reverse Complement ATYAATDAAAACAY WHAATTAAARAARAAAAAAA WHAATTAAARAARAAWHAAWDAAAACAY Direction: Forward Position #: 15 Overlap #: 6 Alignment: --------------ATYAATDAAAACAY WHAATTAAARAARAAAAAAA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Original Motif Original Motif WHAATTAAARAARAAWHAAWDAAAACAY AAAAAAAAAAAAAT WHAATTAAARAARAAWAAAAAAAAAMAHAT Direction: Forward Position #: 17 Overlap #: 12 Alignment: WHAATTAAARAARAAWHAAWDAAAACAY-- ----------------AAAAAAAAAAAAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 33 Combined Motif Reverse Complement Original Motif ATHTYTTTTTTTTTWTTKTTKTTTAATTDW TTTAATGTYTTTWA ATHTYTTTTTTWWTDTTTTTTWTTAATTDW Direction: Forward Position #: 9 Overlap #: 14 Alignment: ATHTYTTTTTTTTTWTTKTTKTTTAATTDW --------TTTAATGTYTTTWA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Reverse Complement Original Motif WHAATTAAWAAAAAAHAWWAAAAAAKAHAT TCTKTGTCAAWA TCTBWGTYAAWAAAAAAHAWWAAAAAAKAHAT Direction: Forward Position #: 3 Overlap #: 10 Alignment: --WHAATTAAWAAAAAAHAWWAAAAAAKAHAT TCTKTGTCAAWA-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Original Motif Original Motif TCTBWGTYAAWAAAAAAHAWWAAAAAAKAHAT HAAAAHAAARMAAA TCTBWGTYAAWAAAAAAHAWWAAAAAADAMAWA Direction: Forward Position #: 20 Overlap #: 13 Alignment: TCTBWGTYAAWAAAAAAHAWWAAAAAAKAHAT- -------------------HAAAAHAAARMAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Reverse Complement TCTBWGTYAAWAAAAAAHAWWAAAAAADAMAWA BTTHAAAAAAYAAAAAAR TCTBWGTYAAWAAAAAVTWHAAAAAAAAAAAAAR Direction: Forward Position #: 17 Overlap #: 17 Alignment: TCTBWGTYAAWAAAAAAHAWWAAAAAADAMAWA- ----------------BTTHAAAAAAYAAAAAAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 21 Original Motif Original Motif TCTBWGTYAAWAAAAAVTWHAAAAAAAAAAAAAR CTGCTTTCCMAA CTKCTTTSYMAAWAAAAAVTWHAAAAAAAAAAAAAR Direction: Forward Position #: 3 Overlap #: 10 Alignment: --TCTBWGTYAAWAAAAAVTWHAAAAAAAAAAAAAR CTGCTTTCCMAA------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 45 Combined Motif Reverse Complement Original Motif KTTTTTTTTTTTTTHWABTTTTTWTTRKSAAAGYAG TAASTCTWTTTTAA KTTTTTTTTTTTWWVTCTTTTTTAWTRKSAAAGYAG Direction: Forward Position #: 12 Overlap #: 14 Alignment: KTTTTTTTTTTTTTHWABTTTTTWTTRKSAAAGYAG -----------TAASTCTWTTTTAA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 25 Combined Motif Reverse Complement Original Motif CTKCTTTSYMAWTAAAAAAGAVWWAAAAAAAAAAAR AATAACAGATT CTKCTTTSYMAWWAWAAMAGATTWAAAAAAAAAAAR Direction: Forward Position #: 13 Overlap #: 11 Alignment: CTKCTTTSYMAWTAAAAAAGAVWWAAAAAAAAAAAR ------------AATAACAGATT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 27 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 27 Motif 25 Original Motif Reverse Complement ATTCTGTRAAG AATCTGTTATT AWTCTGTDAWK Direction: Forward Position #: 1 Overlap #: 11 Alignment: ATTCTGTRAAG AATCTGTTATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Reverse Complement Reverse Complement YWTDACAGAWT BTTHAAAAAAYAAAAAAR YTTHAMARAATAAAAAAR Direction: Forward Position #: 1 Overlap #: 11 Alignment: YWTDACAGAWT------- BTTHAAAAAAYAAAAAAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Original Motif Reverse Complement YTTHAMARAATAAAAAAR TWTTGACAYAGA THTTGACABARWAAAAAAR Direction: Forward Position #: 2 Overlap #: 11 Alignment: -YTTHAMARAATAAAAAAR TWTTGACAYAGA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ctatacggacg Original Motif Reverse Complement THTTGACABARWAAAAAAR CGTCCGTATAG CGTCCGTATWGACABARWAAAAAAR Direction: Forward Position #: 7 Overlap #: 5 Alignment: ------THTTGACABARWAAAAAAR CGTCCGTATAG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Reverse Complement CGTCCGTATWGACABARWAAAAAAR WHAATTAAARAARAAAAAAA CGTCCGTATWGACADWDAAAAAAAAAAAAAA Direction: Forward Position #: 12 Overlap #: 14 Alignment: CGTCCGTATWGACABARWAAAAAAR------ -----------WHAATTAAARAARAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 22 Original Motif Original Motif CGTCCGTATWGACADWDAAAAAAAAAAAAAA TTTATGGTGAGCAT TTTATSGTSMGYATWGACADWDAAAAAAAAAAAAAA Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----CGTCCGTATWGACADWDAAAAAAAAAAAAAA TTTATGGTGAGCAT---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 28 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 28 Motif 27 Reverse Complement Reverse Complement TTTACTAAAT CTTKACAGAAT CTTTACWRAAT Direction: Backward Position #: 1 Overlap #: 10 Alignment: -TTTACTAAAT CTTKACAGAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 46 Reverse Complement Original Motif ATTKWGTAAAG ATAGGTTTAGYATA ATAGRTTTAGTAWAG Direction: Forward Position #: 5 Overlap #: 10 Alignment: ----ATTKWGTAAAG ATAGGTTTAGYATA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 33 Original Motif Reverse Complement ATAGRTTTAGTAWAG TWAAAKACATTAAA TWAAATASATTWARTAWAG Direction: Forward Position #: 5 Overlap #: 10 Alignment: ----ATAGRTTTAGTAWAG TWAAAKACATTAAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif CTWTAKTWAATSTATTTWA KTTTTTTKTTTTTTDAAB CTWTWKTTWATBTWTTTAAB Direction: Forward Position #: 3 Overlap #: 17 Alignment: CTWTAKTWAATSTATTTWA- --KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 23 Reverse Complement Reverse Complement BTTAAAWAVATWAARWAWAG ATYAATGAAWACAT ATYVWTRAAWACATWAARWAWAG Direction: Forward Position #: 4 Overlap #: 11 Alignment: ---BTTAAAWAVATWAARWAWAG ATYAATGAAWACAT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 29 Original Motif Original Motif ATYVWTRAAWACATWAARWAWAG ATTTATTGCTA ATTTATKRMTACATWAARWAWAG Direction: Forward Position #: 1 Overlap #: 11 Alignment: ATYVWTRAAWACATWAARWAWAG ATTTATTGCTA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Reverse Complement CTWTWKTTWATGTARMRATAAAT WHAATTAAARAARAAAAAAA CTWTWKTTWATDTARHDAWAAAWRAAAAAAA Direction: Forward Position #: 12 Overlap #: 12 Alignment: CTWTWKTTWATGTARMRATAAAT-------- -----------WHAATTAAARAARAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Original Motif Original Motif CTWTWKTTWATDTARHDAWAAAWRAAAAAAA TCTKTGTCAAWA CTWTWKTYTDTGTMAAWAWAAAWRAAAAAAA Direction: Forward Position #: 7 Overlap #: 12 Alignment: CTWTWKTTWATDTARHDAWAAAWRAAAAAAA ------TCTKTGTCAAWA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 14 Reverse Complement Reverse Complement TTTTTTTKWTTTWTWTTRACADAKARWAWAG TTATATYATTA TTATWTTWTTAWTTTWTWTTRACADAKARWAWAG Direction: Forward Position #: 4 Overlap #: 8 Alignment: ---TTTTTTTKWTTTWTWTTRACADAKARWAWAG TTATATYATTA----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Reverse Complement Original Motif CTWTWKTYTDTGTMAAWAWAAAWTAAWAAWATAA HAAAAHAAARMAAA CTWTWKTYTDTGTMAAWAWAAAWWAAWAAAAYAAA Direction: Forward Position #: 22 Overlap #: 13 Alignment: CTWTWKTYTDTGTMAAWAWAAAWTAAWAAWATAA- ---------------------HAAAAHAAARMAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 29 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 29 Motif 49 Reverse Complement Original Motif TAGCAATAAAT AAAAAAAAAAAAAT AAAWARMAAWAAAT Direction: Backward Position #: 1 Overlap #: 11 Alignment: ---TAGCAATAAAT AAAAAAAAAAAAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 23 Reverse Complement Original Motif ATTTWTTYKTWTTT ATGTWTTCATTMAT ATKTWTTCDTTHWT Direction: Forward Position #: 1 Overlap #: 14 Alignment: ATTTWTTYKTWTTT ATGTWTTCATTMAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 14 Combined Motif Reverse Complement Original Motif AWHAADGAAWAYAT TAATKATATAA AWTAATKAWAWHAT Direction: Forward Position #: 3 Overlap #: 11 Alignment: AWHAADGAAWAYAT --TAATKATATAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Original Motif Original Motif AWTAATKAWAWHAT AAAGRTMAAACTA AAARATVAAAHTAT Direction: Forward Position #: 1 Overlap #: 13 Alignment: AWTAATKAWAWHAT AAAGRTMAAACTA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Reverse Complement Reverse Complement ATADTTTVATMTTT TGAAAATATGTT TGAWAATWTGWTMTTT Direction: Forward Position #: 3 Overlap #: 10 Alignment: --ATADTTTVATMTTT TGAAAATATGTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 10 Reverse Complement Original Motif AAARAWCAWATTWTCA AAAMATTGTTT AAAVATYRTWTTWTCA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAARAWCAWATTWTCA AAAMATTGTTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Original Motif Reverse Complement AAAVATYRTWTTWTCA WHAATTAAARAARAAAAAAA WHAATTAAARAARAAAAAAAATYRTWTTWTCA Direction: Forward Position #: 17 Overlap #: 4 Alignment: ----------------AAAVATYRTWTTWTCA WHAATTAAARAARAAAAAAA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif TGAWAAWAKMATTTTTTTTKTTKTTTAATTDW KTTTTTTKTTTTTTDAAB TGAWAAWAKMATTTTTTTTTTTTTTTWWTTTTDAAB Direction: Forward Position #: 19 Overlap #: 14 Alignment: TGAWAAWAKMATTTTTTTTKTTKTTTAATTDW---- ------------------KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 33 Combined Motif Original Motif Original Motif TGAWAAWAKMATTTTTTTTTTTTTTTWWTTTTDAAB TTTAATGTYTTTWA TGAWAAWAKMATTTWWTKTTTTTTWTWWTTTTDAAB Direction: Forward Position #: 12 Overlap #: 14 Alignment: TGAWAAWAKMATTTTTTTTTTTTTTTWWTTTTDAAB -----------TTTAATGTYTTTWA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 45 Combined Motif Reverse Complement Reverse Complement BTTHAAAAWWAWAAAAAAYAWWAAATYYTWTTWTCA TTAAAAWAGASTTA BTTHAAAAWWWTAAAAWABABTWAATYYTWTTWTCA Direction: Forward Position #: 11 Overlap #: 14 Alignment: BTTHAAAAWWAWAAAAAAYAWWAAATYYTWTTWTCA ----------TTAAAAWAGASTTA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 30 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 30 Motif 31 Original Motif Original Motif TTGCTGCTTTT TTGTTGATTTT TTGYTGMTTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTGCTGCTTTT TTGTTGATTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 33 Original Motif Original Motif TTGYTGMTTTT TTTAATGTYTTTWA TTKHWKVTTTTTWA Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTGYTGMTTTT--- TTTAATGTYTTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 4 Original Motif Reverse Complement TTKHWKVTTTTTWA TTTRKTTTHTTTTH TTTRKTTTHTTTTHWKVTTTTTWA Direction: Forward Position #: 11 Overlap #: 4 Alignment: ----------TTKHWKVTTTTTWA TTTRKTTTHTTTTH---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 24 Combined Motif Reverse Complement Original Motif TWAAAAAVYWHAAAAHAAARMAAA AAAGWCATWAA TWAAAAAABWCAWAAAAAARMAAA Direction: Forward Position #: 6 Overlap #: 11 Alignment: TWAAAAAVYWHAAAAHAAARMAAA -----AAAGWCATWAA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Reverse Complement Reverse Complement TTTRKTTTTTTWTGWBTTTTTTWA ATTTTTTTTTTTTT TTTRKWTTTTTTTKTTTTTTTTWA Direction: Forward Position #: 6 Overlap #: 14 Alignment: TTTRKTTTTTTWTGWBTTTTTTWA -----ATTTTTTTTTTTTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif TTTRKWTTTTTTTKTTTTTTTTWA KTTTTTTKTTTTTTDAAB TTTRKWTTTTTTTTTTTTTTTTTWTTDAAB Direction: Forward Position #: 13 Overlap #: 12 Alignment: TTTRKWTTTTTTTKTTTTTTTTWA------ ------------KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif TTTRKWTTTTTTTTTTTTTTTTTWTTDAAB TTTTTTTKTTKTTTAATTHW TTTRKWTTTTTTTTTTTTTTTTTTTTTWWDATTHW Direction: Forward Position #: 16 Overlap #: 15 Alignment: TTTRKWTTTTTTTTTTTTTTTTTWTTDAAB----- ---------------TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Reverse Complement Original Motif WHAATHWWAAAAAAAAAAAAAAAAAAAAAWRMAAA CTGCTGBDBBDGBD CTGCTGHVDTHDDDAAAAAAAAAAAAAAAAAAAAWRMAAA Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----WHAATHWWAAAAAAAAAAAAAAAAAAAAAWRMAAA CTGCTGBDBBDGBD-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Reverse Complement Reverse Complement TTTRKWTTTTTTTTTTTTTTTTTTTTDDDHADBDCAGCAG AATCTGTTATT AATYTGTTWTTTTTTTTTTTTTTTTTTTDDDHADBDCAGCAG Direction: Forward Position #: 3 Overlap #: 9 Alignment: --TTTRKWTTTTTTTTTTTTTTTTTTTTDDDHADBDCAGCAG AATCTGTTATT------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 45 Original Motif Original Motif AATYTGTTWTTTTTTTTTTTTTTTTTTTDDDHADBDCAGCAG TAASTCTWTTTTAA WAWBTSTWTTTTWWTTTTTTTTTTTTTTDDDHADBDCAGCAG Direction: Forward Position #: 1 Overlap #: 14 Alignment: AATYTGTTWTTTTTTTTTTTTTTTTTTTDDDHADBDCAGCAG TAASTCTWTTTTAA---------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 31 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 31 Motif 30 Original Motif Original Motif TTGTTGATTTT TTGCTGCTTTT TTGYTGMTTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTGTTGATTTT TTGCTGCTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 49 Reverse Complement Original Motif AAAAYCAKCAA AAAAAAAAAAAAAT AAAAAAAAAAAAATCAKCAA Direction: Forward Position #: 10 Overlap #: 5 Alignment: ---------AAAAYCAKCAA AAAAAAAAAAAAAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Original Motif TTGYTGATTTTTTTTTTTTT TTTTTTTKTTKTTTAATTHW TTGYTGATTTTTTTTTTTTTTTTAATTHW Direction: Forward Position #: 10 Overlap #: 11 Alignment: TTGYTGATTTTTTTTTTTTT--------- ---------TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 33 Combined Motif Original Motif Original Motif TTGYTGATTTTTTTTTTTTTTTTAATTHW TTTAATGTYTTTWA TTGYTGATTTWWTKTTTTTTWTTAATTHW Direction: Forward Position #: 8 Overlap #: 14 Alignment: TTGYTGATTTTTTTTTTTTTTTTAATTHW -------TTTAATGTYTTTWA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 24 Combined Motif Original Motif Reverse Complement TTGYTGATTTWWTKTTTTTTWTTAATTHW TTWATGWCTTT TTGYTGATTTATKDYTTTTTWTTAATTHW Direction: Forward Position #: 8 Overlap #: 11 Alignment: TTGYTGATTTWWTKTTTTTTWTTAATTHW -------TTWATGWCTTT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif TTGYTGATTTATKDYTTTTTWTTAATTHW KTTTTTTKTTTTTTDAAB TTGYTGATTTATKDYTTTTTTTTDWTTTTTDAAB Direction: Forward Position #: 17 Overlap #: 13 Alignment: TTGYTGATTTATKDYTTTTTWTTAATTHW----- ----------------KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Original Motif Reverse Complement TTGYTGATTTATKDYTTTTTTTTDWTTTTTDAAB TTTRKTTTHTTTTH TTGYTGATTTATKDYTTTTTDTTTTTTTTTDAAB Direction: Forward Position #: 18 Overlap #: 14 Alignment: TTGYTGATTTATKDYTTTTTTTTDWTTTTTDAAB -----------------TTTRKTTTHTTTTH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 13 Original Motif Original Motif TTGYTGATTTATKDYTTTTTDTTTTTTTTTDAAB AAWATRTATTT AAWATRTWKTTGATTTATKDYTTTTTDTTTTTTTTTDAAB Direction: Forward Position #: 7 Overlap #: 5 Alignment: ------TTGYTGATTTATKDYTTTTTDTTTTTTTTTDAAB AAWATRTATTT----------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 22 Original Motif Reverse Complement AAWATRTWKTTGATTTATKDYTTTTTDTTTTTTTTTDAAB ATGCTCACCATAAA ATGCTCAMHATAWAKTTGATTTATKDYTTTTTDTTTTTTTTTDAAB Direction: Forward Position #: 7 Overlap #: 8 Alignment: ------AAWATRTWKTTGATTTATKDYTTTTTDTTTTTTTTTDAAB ATGCTCACCATAAA-------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 45 Combined Motif Reverse Complement Original Motif BTTDAAAAAAAAAHAAAAAKDYATAAATCAAYTWTATDYTGAGCAT TAASTCTWTTTTAA BTTDAAAAAAAAATAAVWMTWTWTWAATCAAYTWTATDYTGAGCAT Direction: Forward Position #: 14 Overlap #: 14 Alignment: BTTDAAAAAAAAAHAAAAAKDYATAAATCAAYTWTATDYTGAGCAT -------------TAASTCTWTTTTAA------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 32 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 32 Motif 33 Original Motif Original Motif TTACWGTTT TTTAATGTYTTTWA TTTAMTGTTTTTWA Direction: Backward Position #: 5 Overlap #: 9 Alignment: -TTACWGTTT---- TTTAATGTYTTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Reverse Complement Original Motif TWAAAAACAYTAAA AATAACAGATT WAWAAMASATTAAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: TWAAAAACAYTAAA AATAACAGATT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 30 Reverse Complement Original Motif TTTAATSTRTTWTW TTGCTGCTTTT TTKMWKCTKTTWTW Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTTAATSTRTTWTW TTGCTGCTTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Original Motif Reverse Complement TTKMWKCTKTTWTW CTTKACAGAAT CTTKACASWATTWTW Direction: Forward Position #: 2 Overlap #: 10 Alignment: -TTKMWKCTKTTWTW CTTKACAGAAT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Reverse Complement Reverse Complement WAWAATWSTGTYAAG BTTHAAAAAAYAAAAAAR BTTHAAAAAAYAAAAAAAATWSTGTYAAG Direction: Forward Position #: 15 Overlap #: 4 Alignment: --------------WAWAATWSTGTYAAG BTTHAAAAAAYAAAAAAR----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 7 Reverse Complement Original Motif CTTKACASWATTTTTTTTKTTTTTTDAAB AAAATKCTATT AAAATKCTWTWCASWATTTTTTTTKTTTTTTDAAB Direction: Forward Position #: 7 Overlap #: 5 Alignment: ------CTTKACASWATTTTTTTTKTTTTTTDAAB AAAATKCTATT------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 13 Combined Motif Reverse Complement Reverse Complement BTTHAAAAAAYAAAAAAAATWSTGWAWAGYATTTT AAATAKATWTT BTTHAAAAAAYAAAWADAWWTYTGWAWAGYATTTT Direction: Forward Position #: 12 Overlap #: 11 Alignment: BTTHAAAAAAYAAAAAAAATWSTGWAWAGYATTTT -----------AAATAKATWTT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Reverse Complement Reverse Complement AAAATKCTWTWCAMAWWTDTWTTTKTTTTTTDAAB ATTTTTTTTTTTTT AAAATKCTWTWCAMAWWTDTWTWTTTTTTTTTWWTT Direction: Forward Position #: 23 Overlap #: 13 Alignment: AAAATKCTWTWCAMAWWTDTWTTTKTTTTTTDAAB- ----------------------ATTTTTTTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 45 Combined Motif Reverse Complement Reverse Complement AAWWAAAAAAAAAWAWADAWWTYTGWAWAGYATTTT TTAAAAWAGASTTA AAWWAAAAAWWAAAAWAGANTTHTGWAWAGYATTTT Direction: Forward Position #: 10 Overlap #: 14 Alignment: AAWWAAAAAAAAAWAWADAWWTYTGWAWAGYATTTT ---------TTAAAAWAGASTTA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 24 Combined Motif Reverse Complement Reverse Complement AAAATKCTWTWCAHAANTCTWTTTTWWTTTTTWWTT TTWATGWCTTT AAAATKCTWTWCAHAANTCTWTTTTWATKTYTTTTT Direction: Forward Position #: 24 Overlap #: 11 Alignment: AAAATKCTWTWCAHAANTCTWTTTTWWTTTTTWWTT -----------------------TTWATGWCTTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 33 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 33 Motif 4 Reverse Complement Original Motif TWAAAKACATTAAA HAAAAHAAARMAAA TWAAADAMADYAAA Direction: Backward Position #: 1 Overlap #: 14 Alignment: TWAAAKACATTAAA HAAAAHAAARMAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Original Motif Reverse Complement TWAAADAMADYAAA WHAATTAAARAARAAAAAAA WHAATTAAARAARAWAAAAHAMADYAAA Direction: Forward Position #: 15 Overlap #: 6 Alignment: --------------TWAAADAMADYAAA WHAATTAAARAARAAAAAAA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif TTTMDTRTHTTTTWTKTTKTTTAATTDW KTTTTTTKTTTTTTDAAB TTTMDTRTHTTTTWTKTTTTTTDWTTTTTDAAB Direction: Forward Position #: 16 Overlap #: 13 Alignment: TTTMDTRTHTTTTWTKTTKTTTAATTDW----- ---------------KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Reverse Complement Original Motif BTTHAAAAAWDAAAAAARAWAAAAHAMADYAAA AAAAAAAAAAAAAT BTTHAAAAAWDAAAAAARAWAAAAAAAAAAAAAT Direction: Forward Position #: 21 Overlap #: 13 Alignment: BTTHAAAAAWDAAAAAARAWAAAAHAMADYAAA- --------------------AAAAAAAAAAAAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 23 Combined Motif Original Motif Reverse Complement BTTHAAAAAWDAAAAAARAWAAAAAAAAAAAAAT ATYAATGAAWACAT BTTHAAAAATBAAWRAAWAMAWAAAAAAAAAAAT Direction: Forward Position #: 9 Overlap #: 14 Alignment: BTTHAAAAAWDAAAAAARAWAAAAAAAAAAAAAT --------ATYAATGAAWACAT------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 45 Combined Motif Reverse Complement Original Motif ATTTTTTTTTTTWTRTWTTMWTTVATTTTTDAAB TAASTCTWTTTTAA ATTTTTTTTTTTAWGTYTTYTTTAATTTTTDAAB Direction: Forward Position #: 12 Overlap #: 14 Alignment: ATTTTTTTTTTTWTRTWTTMWTTVATTTTTDAAB -----------TAASTCTWTTTTAA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 22 Reverse Complement Reverse Complement BTTHAAAAATTAAAMAAKACWTAAAAAAAAAAAT ATGCTCACCATAAA ATGCTCACCWTAAAAAATTAAAMAAKACWTAAAAAAAAAAAT Direction: Forward Position #: 9 Overlap #: 6 Alignment: --------BTTHAAAAATTAAAMAAKACWTAAAAAAAAAAAT ATGCTCACCATAAA---------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 11 Combined Motif Original Motif Original Motif ATGCTCACCWTAAAAAATTAAAMAAKACWTAAAAAAAAAAAT AAMATGTTTMAA ATGCTCACCWTAAAAAATKWWWMAAKACWTAAAAAAAAAAAT Direction: Forward Position #: 14 Overlap #: 12 Alignment: ATGCTCACCWTAAAAAATTAAAMAAKACWTAAAAAAAAAAAT -------------AAMATGTTTMAA----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Original Motif ATGCTCACCWTAAAAAATKWWWMAAKACWTAAAAAAAAAAAT CACTGTGRTRTCACAGTGSWSCACT CACTGTGRTRTCACARTGCTCMMCTTAAAAAATKWWWMAAKACWTAAAAAAAAAAAT Direction: Forward Position #: 16 Overlap #: 10 Alignment: ---------------ATGCTCACCWTAAAAAATKWWWMAAKACWTAAAAAAAAAAAT CACTGTGRTRTCACAGTGSWSCACT-------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Combined Motif Reverse Complement Reverse Complement ATTTTTTTTTTTAWGTYTTYWWWYATTTTTTAAGRYGAGCAKTGTGAMAMCACAGTG TAGTTTYAKCTTT ATTTTTTTTTTTAWGTYTWBTTTYATYTTTTAAGRYGAGCAKTGTGAMAMCACAGTG Direction: Forward Position #: 18 Overlap #: 13 Alignment: ATTTTTTTTTTTAWGTYTTYWWWYATTTTTTAAGRYGAGCAKTGTGAMAMCACAGTG -----------------TAGTTTYAKCTTT--------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 34 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 34 Motif 15 Reverse Complement Reverse Complement TCATCTTT TAGTTTYAKCTTT TAGTTTCATCTTT Direction: Forward Position #: 6 Overlap #: 8 Alignment: -----TCATCTTT TAGTTTYAKCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif taaacgatgcc Reverse Complement Original Motif AAAGATGAAACTA TAAACGATGCC TAAAMGATGMMACTA Direction: Forward Position #: 3 Overlap #: 9 Alignment: --AAAGATGAAACTA TAAACGATGCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Original Motif Reverse Complement TAAAMGATGMMACTA TGAAAATATGTT TKAAAAKATGHHACTA Direction: Forward Position #: 2 Overlap #: 11 Alignment: -TAAAMGATGMMACTA TGAAAATATGTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Original Motif Original Motif TKAAAAKATGHHACTA AAAGGTCAAAGGTCAAC AAAGGTCAAAGGTBAAMAKATGHHACTA Direction: Forward Position #: 13 Overlap #: 5 Alignment: ------------TKAAAAKATGHHACTA AAAGGTCAAAGGTCAAC----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Original Motif Reverse Complement AAAGGTCAAAGGTBAAMAKATGHHACTA AKGYYCAAAGRTCA AKGYYCAAAGGTCAAAGGTBAAMAKATGHHACTA Direction: Forward Position #: 7 Overlap #: 8 Alignment: ------AAAGGTCAAAGGTBAAMAKATGHHACTA AKGYYCAAAGRTCA-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 45 Reverse Complement Reverse Complement TAGTHHCATYTYTTBACCTTTGACCTTTGMMCYT TTAAAAWAGASTTA TTAAAATAGWVTYATYTYTTBACCTTTGACCTTTGMMCYT Direction: Forward Position #: 7 Overlap #: 8 Alignment: ------TAGTHHCATYTYTTBACCTTTGACCTTTGMMCYT TTAAAAWAGASTTA-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 35 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 35 Motif 33 Original Motif Original Motif AGATGYTCTTG TTTAATGTYTTTWA TTWRATGTTYTTDA Direction: Backward Position #: 2 Overlap #: 11 Alignment: --AGATGYTCTTG- TTTAATGTYTTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif THAAKAACATKWAA TTCAGCACCATGGACAGCKCC TTCARBAMCATGDAMAGCKCC Direction: Forward Position #: 2 Overlap #: 14 Alignment: -THAAKAACATKWAA------ TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Reverse Complement Original Motif GGYGCTYTHCATGRTBKTGAA CWGAGCCAYCTYTC CWGAGSSABCTYTYCATGRTBKTGAA Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----GGYGCTYTHCATGRTBKTGAA CWGAGCCAYCTYTC------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Original Motif Original Motif CWGAGSSABCTYTYCATGRTBKTGAA CTGCTGBDBBDGBD CWGMKGSHBCTBTHCATGRTBKTGAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: CWGAGSSABCTYTYCATGRTBKTGAA CTGCTGBDBBDGBD------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 36 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 36 AmTGTGACACCACAGT Original Motif Reverse Complement TGGTGTCA ACTGTGGTGTCACART ACTGTGGTGTCACART Direction: Backward Position #: 5 Overlap #: 8 Alignment: ----TGGTGTCA---- ACTGTGGTGTCACART ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Reverse Complement AMTGTGACACCACAGT ACTGTGACACCACAGTGGAGCACT ACTGTGACACCACAGTGGAGCACT Direction: Forward Position #: 1 Overlap #: 16 Alignment: AMTGTGACACCACAGT-------- ACTGTGACACCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Reverse Complement Original Motif AGTGCTCCACTGTGGTGTCACAGT TGTGGTGTCACAGTGCTCC TRKKGYKYCACWGTGSTSYCACAGT Direction: Forward Position #: 2 Overlap #: 18 Alignment: -AGTGCTCCACTGTGGTGTCACAGT TGTGGTGTCACAGTGCTCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Reverse Complement Original Motif ACTGTGMSASCACWGTGMRMCRRKA TGGAGCACTGTGACAVCACAGTGG ACTGTKVSAGCACWGTGAVACVABAGTGG Direction: Forward Position #: 6 Overlap #: 20 Alignment: ACTGTGMSASCACWGTGMRMCRRKA---- -----TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Original Motif Reverse Complement ACTGTKVSAGCACWGTGAVACVABAGTGG AGTGSWSCACTGTGAMAMCACAGTG ACTRKTGSAGCACTGTGAMACCACAGTGG Direction: Forward Position #: 4 Overlap #: 25 Alignment: ACTGTKVSAGCACWGTGAVACVABAGTGG ---AGTGSWSCACTGTGAMAMCACAGTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 23 Combined Motif Reverse Complement Reverse Complement CCACTGTGGTRTCACAGTGCTSCARMAGT ATYAATGAAWACAT CCACTGTGGTRTCACAGTGCTSCAWYAATGAAWACAT Direction: Forward Position #: 24 Overlap #: 6 Alignment: CCACTGTGGTRTCACAGTGCTSCARMAGT-------- -----------------------ATYAATGAAWACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Reverse Complement Reverse Complement ATGTWTTCATTKWTGSAGCACTGTGAMACCACAGTGG TAGTTTYAKCTTT TARTKTHWTCWTTKWTGSAGCACTGTGAMACCACAGTGG Direction: Forward Position #: 3 Overlap #: 11 Alignment: --ATGTWTTCATTKWTGSAGCACTGTGAMACCACAGTGG TAGTTTYAKCTTT-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Original Motif Reverse Complement TARTKTHWTCWTTKWTGSAGCACTGTGAMACCACAGTGG TWTTGACAYAGA TWTTGACATAGWKTHWTCWTTKWTGSAGCACTGTGAMACCACAGTGG Direction: Forward Position #: 9 Overlap #: 4 Alignment: --------TARTKTHWTCWTTKWTGSAGCACTGTGAMACCACAGTGG TWTTGACAYAGA----------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Original Motif Original Motif TWTTGACATAGWKTHWTCWTTKWTGSAGCACTGTGAMACCACAGTGG ATTCTGTRAAG ATTCTGTDWWGACATAGWKTHWTCWTTKWTGSAGCACTGTGAMACCACAGTGG Direction: Forward Position #: 7 Overlap #: 5 Alignment: ------TWTTGACATAGWKTHWTCWTTKWTGSAGCACTGTGAMACCACAGTGG ATTCTGTRAAG------------------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 47 Reverse Complement Original Motif CCACTGTGGTRTCACAGTGCTSCAWYAAWGAWHAYWCTATGTCWWDACAGAAT YGCCACCTDSTGGY YGCCACYKTGDKGYCACAGTGCTSCAWYAAWGAWHAYWCTATGTCWWDACAGAAT Direction: Forward Position #: 3 Overlap #: 12 Alignment: --CCACTGTGGTRTCACAGTGCTSCAWYAAWGAWHAYWCTATGTCWWDACAGAAT YGCCACCTDSTGGY----------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 37 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 37 atactttggc Reverse Complement Reverse Complement CCAAAGT GCCAAAGTAT GCCAAAGTAT Direction: Forward Position #: 2 Overlap #: 7 Alignment: -CCAAAGT-- GCCAAAGTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwCCAmAGTCmt Original Motif Original Motif GCCAAAGTAT DDCCAMAGTCHB DGCCAAAGTMTB Direction: Forward Position #: 2 Overlap #: 10 Alignment: -GCCAAAGTAT- DDCCAMAGTCHB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif DGCCAAAGTMTB AGTGCTCCACTGTGGTGTCACAGT AGTGHTCCAMWGTVBTGTCACAGT Direction: Forward Position #: 5 Overlap #: 12 Alignment: ----DGCCAAAGTMTB-------- AGTGCTCCACTGTGGTGTCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Reverse Complement Original Motif ACTGTGACAVVACWRTGGADCACT AMTGTGACACCACAGT ACTGTGACAVCACAGTGGADCACT Direction: Forward Position #: 1 Overlap #: 16 Alignment: ACTGTGACAVVACWRTGGADCACT AMTGTGACACCACAGT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Reverse Complement Reverse Complement AGTGHTCCACTGTGVTGTCACAGT AGTGCTCCACTGTGDTG AGTGCTCCACTGTGVTGTCACAGT Direction: Forward Position #: 1 Overlap #: 17 Alignment: AGTGHTCCACTGTGVTGTCACAGT AGTGCTCCACTGTGDTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Original Motif AGTGCTCCACTGTGVTGTCACAGT CAGTGCTCCACTGTGBT CAGTGCTCCACTGTGBTGTCACAGT Direction: Forward Position #: 2 Overlap #: 16 Alignment: -AGTGCTCCACTGTGVTGTCACAGT CAGTGCTCCACTGTGBT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Reverse Complement Original Motif ACTGTGACABCACAGTGGAGCACTG TGAMCTTTGMMCYT TGAMCTKTGACMHCACAGTGGAGCACTG Direction: Forward Position #: 4 Overlap #: 11 Alignment: ---ACTGTGACABCACAGTGGAGCACTG TGAMCTTTGMMCYT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement TGAMCTKTGACMHCACAGTGGAGCACTG AGTGSWSCACTGTGAMAMCACAGTG AGTGSTGMACTGTGAMMHCACAGTGGAGCACTG Direction: Forward Position #: 6 Overlap #: 20 Alignment: -----TGAMCTKTGACMHCACAGTGGAGCACTG AGTGSWSCACTGTGAMAMCACAGTG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Reverse Complement Original Motif CAGTGCTCCACTGTGDYRTCACAGTYCASCACT TGGAGCACTGTGACAVCACAGTGG CAGTGSWSCACTGTGAYRYCACAGTBSASCACT Direction: Forward Position #: 4 Overlap #: 24 Alignment: CAGTGCTCCACTGTGDYRTCACAGTYCASCACT ---TGGAGCACTGTGACAVCACAGTGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Reverse Complement Original Motif AGTGSTSBACTGTGMKKTCACAGTGSWSCACTG AAAGGTCAAAGGTCAAC AAAGGTCARWGGTCAACTGTGMKKTCACAGTGSWSCACTG Direction: Forward Position #: 8 Overlap #: 10 Alignment: -------AGTGSTSBACTGTGMKKTCACAGTGSWSCACTG AAAGGTCAAAGGTCAAC----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 38 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 38 Motif 33 Original Motif Original Motif ATKAYTTTG TTTAATGTYTTTWA TTTAATGWYTTTDA Direction: Forward Position #: 5 Overlap #: 9 Alignment: ----ATKAYTTTG- TTTAATGTYTTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 35 Original Motif Original Motif TTTAATGWYTTTDA AGATGYTCTTG AGATGYTYTTRATGWYTTTDA Direction: Forward Position #: 8 Overlap #: 4 Alignment: -------TTTAATGWYTTTDA AGATGYTCTTG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 18 Combined Motif Reverse Complement Original Motif THAAAKWCATKAAKAKCATCT CAAAGTCCAGC TCAAAGTCMWGMAKAKCATCT Direction: Forward Position #: 2 Overlap #: 11 Alignment: THAAAKWCATKAAKAKCATCT -CAAAGTCCAGC--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Original Motif TCAAAGTCMWGMAKAKCATCT TGAAAATSCTT TSAAARTCCTKMAKAKCATCT Direction: Forward Position #: 1 Overlap #: 11 Alignment: TCAAAGTCMWGMAKAKCATCT TGAAAATSCTT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 49 Original Motif Original Motif TSAAARTCCTKMAKAKCATCT AAAAAAAAAAAAAT AAAAAAAWAAAAATCCTKMAKAKCATCT Direction: Forward Position #: 8 Overlap #: 7 Alignment: -------TSAAARTCCTKMAKAKCATCT AAAAAAAAAAAAAT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwCCAmAGTCmt Combined Motif Original Motif Original Motif AAAAAAAWAAAAATCCTKMAKAKCATCT DDCCAMAGTCHB AAAAAAAHCAAARTCCTKMAKAKCATCT Direction: Forward Position #: 6 Overlap #: 12 Alignment: AAAAAAAWAAAAATCCTKMAKAKCATCT -----DDCCAMAGTCHB----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif atactttggc Original Motif Reverse Complement AAAAAAAHCAAARTCCTKMAKAKCATCT GCCAAAGTAT GCMAAARWATCAAARTCCTKMAKAKCATCT Direction: Forward Position #: 3 Overlap #: 8 Alignment: --AAAAAAAHCAAARTCCTKMAKAKCATCT GCCAAAGTAT-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 7 Reverse Complement Original Motif AGATGYTYTYRAGGAMTTTGATWKTTTYGC AAAATKCTATT AARATGCTHTTRAGGAMTTTGATWKTTTYGC Direction: Forward Position #: 2 Overlap #: 10 Alignment: -AGATGYTYTYRAGGAMTTTGATWKTTTYGC AAAATKCTATT-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 14 Reverse Complement Original Motif GCKAAAYWATCAAARTCCTKAAHAGCATKTT TAATKATATAA TARYKAWATAATCAAARTCCTKAAHAGCATKTT Direction: Forward Position #: 3 Overlap #: 9 Alignment: --GCKAAAYWATCAAARTCCTKAAHAGCATKTT TAATKATATAA---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 46 Original Motif Original Motif TARYKAWATAATCAAARTCCTKAAHAGCATKTT ATAGGTTTAGYATA ATAGBTWTAKHATAAAARTCCTKAAHAGCATKTT Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TARYKAWATAATCAAARTCCTKAAHAGCATKTT ATAGGTTTAGYATA-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 39 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 39 TgTGgTGTCACAGTGCTCC Original Motif Reverse Complement GCTGTGAC GGAGCACTGTGACACCACA GGAGCRCTGTGACACCACA Direction: Forward Position #: 6 Overlap #: 8 Alignment: -----GCTGTGAC------ GGAGCACTGTGACACCACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Reverse Complement GGAGCRCTGTGACACCACA ACTGTGGTGTCACART RSWGYGSTGTSACAVYACA Direction: Forward Position #: 1 Overlap #: 16 Alignment: GGAGCRCTGTGACACCACA ACTGTGGTGTCACART--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement RSWGYGSTGTSACAVYACA ACTGTGACACCACAGTGGAGCACT ASTGTGAYRYCACAGTRSAGCACT Direction: Forward Position #: 1 Overlap #: 19 Alignment: RSWGYGSTGTSACAVYACA----- ACTGTGACACCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Original Motif ASTGTGAYRYCACAGTRSAGCACT TGGAGCACTGTGACAVCACAGTGG TRSWGYRMTGTSACAVYACAGYRST Direction: Forward Position #: 2 Overlap #: 23 Alignment: -ASTGTGAYRYCACAGTRSAGCACT TGGAGCACTGTGACAVCACAGTGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA Combined Motif Reverse Complement Original Motif ASKMCTGTKVTGTSACARKKCWSMA AAAGGTCAAAGGTCAAC ASKMCTGWDVKGTCAMAGGTCAVCA Direction: Forward Position #: 8 Overlap #: 17 Alignment: ASKMCTGTKVTGTSACARKKCWSMA -------AAAGGTCAAAGGTCAAC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement ASKMCTGWDVKGTCAMAGGTCAVCA AGTGSWSCACTGTGAMAMCACAGTG AGTRCTGCAMTGTSAMAVSWCAGYR Direction: Forward Position #: 1 Overlap #: 25 Alignment: ASKMCTGWDVKGTCAMAGGTCAVCA AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 40 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 40 Motif 18 Original Motif Original Motif AAGTTCA CAAAGTCCAGC CAAAGTYCAGC Direction: Forward Position #: 3 Overlap #: 7 Alignment: --AAGTTCA-- CAAAGTCCAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Reverse Complement Reverse Complement GCTGKACTTTG GTTGACCTTTGACCTTT GYTGDMCTTTGACCTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: GCTGKACTTTG------ GTTGACCTTTGACCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Original Motif Original Motif GYTGDMCTTTGACCTTT TGAMCTTTGMMCYT TGAMCKYTGVMCTTTGACCTTT Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----GYTGDMCTTTGACCTTT TGAMCTTTGMMCYT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Esrrb Original Motif Reverse Complement TGAMCKYTGVMCTTTGACCTTT TGACCTTGMBBB TGACCTTKRVVCTTTGACCTTT Direction: Forward Position #: 1 Overlap #: 12 Alignment: TGAMCKYTGVMCTTTGACCTTT TGACCTTGMBBB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 35 Reverse Complement Reverse Complement AAAGGTCAAAGVBMRAAGGTCA CAAGAKCATCT MAAGRTCAWMTVBMRAAGGTCA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAAGGTCAAAGVBMRAAGGTCA CAAGAKCATCT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Original Motif Original Motif MAAGRTCAWMTVBMRAAGGTCA AAAGRTMAAACTA AAAGRTCAAAYTAMRAAGGTCA Direction: Forward Position #: 1 Overlap #: 13 Alignment: MAAGRTCAWMTVBMRAAGGTCA AAAGRTMAAACTA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR4A2 Reverse Complement Reverse Complement TGACCTTKRTAKTTTGAKCTTT GTGACCTT GTGACCTTKRTAKTTTGAKCTTT Direction: Forward Position #: 2 Overlap #: 7 Alignment: -TGACCTTKRTAKTTTGAKCTTT GTGACCTT--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RORA_1 Reverse Complement Original Motif AAAGRTCAAAYTAMRAAGGTCAC AWVDAGGTCA AWMAAGGTCAAAYTAMRAAGGTCAC Direction: Forward Position #: 3 Overlap #: 8 Alignment: --AAAGRTCAAAYTAMRAAGGTCAC AWVDAGGTCA--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW2 Reverse Complement Original Motif GTGACCTTKRTAKTTTGACCTTYWT YGGACTTACG VKGACYTWBGTAKTTTGACCTTYWT Direction: Forward Position #: 1 Overlap #: 10 Alignment: GTGACCTTKRTAKTTTGACCTTYWT YGGACTTACG--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 41 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 41 Motif 28 Reverse Complement Reverse Complement TTTCCTCCA TTTACTAAAT TTTMCTMMAT Direction: Forward Position #: 1 Overlap #: 9 Alignment: TTTCCTCCA- TTTACTAAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 23 Reverse Complement Reverse Complement ATYYAGYAAA ATYAATGAAWACAT ATYHAKBAAAACAT Direction: Forward Position #: 1 Overlap #: 10 Alignment: ATYYAGYAAA---- ATYAATGAAWACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Reverse Complement Original Motif ATGTTTTBYTHKAT CAGTGCTCCACTGTGBT CAGTGCTCCAMTGTKTTBYTHKAT Direction: Forward Position #: 11 Overlap #: 7 Alignment: ----------ATGTTTTBYTHKAT CAGTGCTCCACTGTGBT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Reverse Complement ATYHAKBAAYACAYTGGAGCACTG ACTGTGACACCACAGTGGAGCACT AMTBTRDCAVCACABTGGAGCACTG Direction: Forward Position #: 2 Overlap #: 23 Alignment: -ATYHAKBAAYACAYTGGAGCACTG ACTGTGACACCACAGTGGAGCACT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Reverse Complement Original Motif CAGTGCTCCABTGTGVTGDKABAYT CAHCACAGTGGAGCACT CAHCACAGTGSWSCACTGTGVTGDKABAYT Direction: Forward Position #: 6 Overlap #: 12 Alignment: -----CAGTGCTCCABTGTGVTGDKABAYT CAHCACAGTGGAGCACT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Reverse Complement AMTBTRDCAVCACAGTGSWSCACTGTGDTG CCACTGTGVTGTCACAGTGCTCCA CCAMTGTGDYRTCACAGTGCTSCACTGTGDTG Direction: Forward Position #: 3 Overlap #: 22 Alignment: --AMTBTRDCAVCACAGTGSWSCACTGTGDTG CCACTGTGVTGTCACAGTGCTCCA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 42 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 42 Motif 23 Original Motif Reverse Complement TGAATGAA ATYAATGAAWACAT ATYAATGAATRMAT Direction: Backward Position #: 2 Overlap #: 8 Alignment: -----TGAATGAA- ATYAATGAAWACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 44 Original Motif Original Motif ATYAATGAATRMAT AATGKAAGAA AATBDAWGAATRMAT Direction: Forward Position #: 2 Overlap #: 9 Alignment: -ATYAATGAATRMAT AATGKAAGAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 41 Original Motif Original Motif AATBDAWGAATRMAT TGGAGGAAA TGRAKGAAAGAATRMAT Direction: Forward Position #: 3 Overlap #: 7 Alignment: --AATBDAWGAATRMAT TGGAGGAAA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 33 Original Motif Reverse Complement TGRAKGAAAGAATRMAT TWAAAKACATTAAA TTRAAKRMAWKAAWRMAT Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TGRAKGAAAGAATRMAT TWAAAKACATTAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Original Motif Reverse Complement TTRAAKRMAWKAAWRMAT CTTKACAGAAT CTTDAMDGAATKAAWRMAT Direction: Forward Position #: 2 Overlap #: 10 Alignment: -TTRAAKRMAWKAAWRMAT CTTKACAGAAT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Reverse Complement Original Motif ATYKWTTYATTCDYTHAAG AAMATGTTTMAA AAAWTGTTTHAWTCDYTHAAG Direction: Forward Position #: 3 Overlap #: 10 Alignment: --ATYKWTTYATTCDYTHAAG AAMATGTTTMAA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 21 Reverse Complement Original Motif CTTDAKDGAWTDAAACAWTTT CTGCTTTCCMAA CTGCTTTMBHRAWTDAAACAWTTT Direction: Forward Position #: 4 Overlap #: 9 Alignment: ---CTTDAKDGAWTDAAACAWTTT CTGCTTTCCMAA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif taaacgatgcc Reverse Complement Reverse Complement AAAWTGTTTHAWTKBBRAAAGCAG GGCATCGTTTA GRMATYGTTTAAWTKBBRAAAGCAG Direction: Forward Position #: 2 Overlap #: 10 Alignment: -AAAWTGTTTHAWTKBBRAAAGCAG GGCATCGTTTA-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Original Motif Original Motif GRMATYGTTTAAWTKBBRAAAGCAG AACATATTTTCA RACATMKTTTCAWTKBBRAAAGCAG Direction: Forward Position #: 1 Overlap #: 12 Alignment: GRMATYGTTTAAWTKBBRAAAGCAG AACATATTTTCA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 24 Original Motif Reverse Complement RACATMKTTTCAWTKBBRAAAGCAG TTWATGWCTTT TTDAYRTCTTTTCAWTKBBRAAAGCAG Direction: Forward Position #: 3 Overlap #: 9 Alignment: --RACATMKTTTCAWTKBBRAAAGCAG TTWATGWCTTT---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 43 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 43 Motif 4 Reverse Complement Reverse Complement TGCCTTTCYTT TTTRKTTTHTTTTH TTKSCTTTCTTTTH Direction: Backward Position #: 3 Overlap #: 11 Alignment: -TGCCTTTCYTT-- TTTRKTTTHTTTTH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Original Motif Reverse Complement TTKSCTTTCTTTTH ATTTTTTTTTTTTT WTTBTTTTYTTTTT Direction: Forward Position #: 1 Overlap #: 14 Alignment: TTKSCTTTCTTTTH ATTTTTTTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 21 Reverse Complement Reverse Complement AAAAAMAAAAVAAW TTYGGAAAGCAG TTYGRAAARCARAAVAAW Direction: Forward Position #: 5 Overlap #: 8 Alignment: ----AAAAAMAAAAVAAW TTYGGAAAGCAG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Reverse Complement Original Motif WTTBTTMTGMTTTMCKAA TTTTTTTKTTKTTTAATTHW TTTTTTTKTTKTTTAAWTHWTTMTGMTTTMCKAA Direction: Forward Position #: 17 Overlap #: 4 Alignment: ----------------WTTBTTMTGMTTTMCKAA TTTTTTTKTTKTTTAATTHW-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 23 Original Motif Original Motif TTTTTTTKTTKTTTAAWTHWTTMTGMTTTMCKAA ATGTWTTCATTMAT ATKTTTTYATTHWTTAAWTHWTTMTGMTTTMCKAA Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TTTTTTTKTTKTTTAAWTHWTTMTGMTTTMCKAA ATGTWTTCATTMAT--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Reverse Complement ATKTTTTYATTHWTTAAWTHWTTMTGMTTTMCKAA AAGSATTTTCA AARBATTTTCATTHWTTAAWTHWTTMTGMTTTMCKAA Direction: Forward Position #: 3 Overlap #: 9 Alignment: --ATKTTTTYATTHWTTAAWTHWTTMTGMTTTMCKAA AAGSATTTTCA-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 45 Combined Motif Reverse Complement Reverse Complement TTYGRAAARCARAAWHAWTTAAWHAATGAAAATVKTT TTAAAAWAGASTTA TTYKTAAAAHAGAVTTAWTTAAWHAATGAAAATVKTT Direction: Forward Position #: 4 Overlap #: 14 Alignment: TTYGRAAARCARAAWHAWTTAAWHAATGAAAATVKTT ---TTAAAAWAGASTTA-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 24 Combined Motif Original Motif Original Motif TTYKTAAAAHAGAVTTAWTTAAWHAATGAAAATVKTT AAAGWCATWAA TTYKTAAAAHAGAVTAAAKWMATWAATGAAAATVKTT Direction: Forward Position #: 16 Overlap #: 11 Alignment: TTYKTAAAAHAGAVTTAWTTAAWHAATGAAAATVKTT ---------------AAAGWCATWAA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 33 Combined Motif Original Motif Reverse Complement TTYKTAAAAHAGAVTAAAKWMATWAATGAAAATVKTT TWAAAKACATTAAA TTYKTAAAAHAGAHWAAAKACATTAAWGAAAATVKTT Direction: Forward Position #: 14 Overlap #: 14 Alignment: TTYKTAAAAHAGAVTAAAKWMATWAATGAAAATVKTT -------------TWAAAKACATTAAA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Esrrb Reverse Complement Reverse Complement AAYBATTTTCWTTAATGTYTTTWHTCTHTTTTAYKAA TGACCTTGMBBB TGACCTTRAYBDTTTTCWTTAATGTYTTTWHTCTHTTTTAYKAA Direction: Forward Position #: 8 Overlap #: 5 Alignment: -------AAYBATTTTCWTTAATGTYTTTWHTCTHTTTTAYKAA TGACCTTGMBBB-------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 44 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 44 Motif 23 Original Motif Reverse Complement AATGKAAGAA ATYAATGAAWACAT AWHWRTRARAACAT Direction: Backward Position #: 4 Overlap #: 10 Alignment: -AATGKAAGAA--- ATYAATGAAWACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 14 Original Motif Original Motif AWHWRTRARAACAT TAATKATATAA TAATDATAWAAACAT Direction: Forward Position #: 2 Overlap #: 10 Alignment: -AWHWRTRARAACAT TAATKATATAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Reverse Complement Reverse Complement ATGTTTWTATDATTA AATCTGTTATT AATSTKTTWWTDATTA Direction: Forward Position #: 2 Overlap #: 10 Alignment: -ATGTTTWTATDATTA AATCTGTTATT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Original Motif Reverse Complement AATSTKTTWWTDATTA ATTTTTTTTTTTTT AATBTTTTTTTTTTTA Direction: Forward Position #: 2 Overlap #: 14 Alignment: AATSTKTTWWTDATTA -ATTTTTTTTTTTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 17 Combined Motif Original Motif Original Motif AATBTTTTTTTTTTTA CTTCTGACCTC AATBTTTTTYTTYTKACCTC Direction: Forward Position #: 10 Overlap #: 7 Alignment: AATBTTTTTTTTTTTA---- ---------CTTCTGACCTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 43 Original Motif Reverse Complement AATBTTTTTYTTYTKACCTC TGCCTTTCYTT TGMMTTTYTTTYTTYTKACCTC Direction: Forward Position #: 3 Overlap #: 9 Alignment: --AATBTTTTTYTTYTKACCTC TGCCTTTCYTT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Reverse Complement Reverse Complement GAGGTYAKAAKAAAKAAAYYCA WHAATTAAARAARAAAAAAA GARGTYARAAAAAAAAAAHHCA Direction: Forward Position #: 1 Overlap #: 20 Alignment: GAGGTYAKAAKAAAKAAAYYCA WHAATTAAARAARAAAAAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Reverse Complement Reverse Complement TGHHTTTTTTTTTTKTMACMTC TTTRKTTTHTTTTH TGHHTTTDTTTTTTTTWACMTC Direction: Forward Position #: 5 Overlap #: 14 Alignment: TGHHTTTTTTTTTTKTMACMTC ----TTTRKTTTHTTTTH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 24 Original Motif Reverse Complement TGHHTTTDTTTTTTTTWACMTC TTWATGWCTTT TKWATKTCTTTTTTTTWACMTC Direction: Forward Position #: 1 Overlap #: 11 Alignment: TGHHTTTDTTTTTTTTWACMTC TTWATGWCTTT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 31 Original Motif Original Motif TKWATKTCTTTTTTTTWACMTC TTGTTGATTTT TTDWTGWTTTTTTTTTWACMTC Direction: Forward Position #: 1 Overlap #: 11 Alignment: TKWATKTCTTTTTTTTWACMTC TTGTTGATTTT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 45 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 45 TFM13 Reverse Complement Reverse Complement TTAAAAWAGASTTA WHAATTAAARAARAAAAAAA WHAATTAAAAAAGAVWWAAA Direction: Forward Position #: 5 Overlap #: 14 Alignment: ----TTAAAAWAGASTTA-- WHAATTAAARAARAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Reverse Complement WHAATTAAAAAAGAVWWAAA BTTHAAAAAAYAAAAAAR WBWWTWAAAAAARAAAAAAA Direction: Forward Position #: 2 Overlap #: 18 Alignment: WHAATTAAAAAAGAVWWAAA -BTTHAAAAAAYAAAAAAR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 33 Combined Motif Reverse Complement Original Motif TTTTTTTKTTTTTTWAWWBW TTTAATGTYTTTWA TTTTTTWWTKTTTTTWAWBW Direction: Forward Position #: 4 Overlap #: 14 Alignment: TTTTTTTKTTTTTTWAWWBW ---TTTAATGTYTTTWA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Original Motif Reverse Complement TTTTTTWWTKTTTTTWAWBW TTTRKTTTHTTTTH TTTTTTRDTTTTTTTWWWBW Direction: Forward Position #: 4 Overlap #: 14 Alignment: TTTTTTWWTKTTTTTWAWBW ---TTTRKTTTHTTTTH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 23 Original Motif Original Motif TTTTTTRDTTTTTTTWWWBW ATGTWTTCATTMAT ATKTTTTCATTHWTTTWWWBW Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TTTTTTRDTTTTTTTWWWBW ATGTWTTCATTMAT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 46 Reverse Complement Reverse Complement WBWWWAAAWHAATGAAAAYAT TATKCTAAACCTAT TATKCTAAACCWATGAAAAYAT Direction: Forward Position #: 2 Overlap #: 13 Alignment: -WBWWWAAAWHAATGAAAAYAT TATKCTAAACCTAT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Reverse Complement Reverse Complement ATKTTTTCATWGGTTTAGRATA ATTTTTTTTTTTTT ATKTWTTTWTTKTTTTWTRATA Direction: Forward Position #: 5 Overlap #: 14 Alignment: ATKTTTTCATWGGTTTAGRATA ----ATTTTTTTTTTTTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 46 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 46 Motif 15 Reverse Complement Original Motif TATKCTAAACCTAT AAAGRTMAAACTA TAWDSDWAAMMYWW Direction: Backward Position #: 1 Overlap #: 13 Alignment: TATKCTAAACCTAT -AAAGRTMAAACTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 22 Original Motif Original Motif TAWDSDWAAMMYWW TTTATGGTGAGCAT TTTATGGTDARCATWW Direction: Forward Position #: 3 Overlap #: 12 Alignment: --TAWDSDWAAMMYWW TTTATGGTGAGCAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 45 Original Motif Original Motif TTTATGGTDARCATWW TAASTCTWTTTTAA TAASTYTATKKTAARCATWW Direction: Forward Position #: 5 Overlap #: 10 Alignment: ----TTTATGGTDARCATWW TAASTCTWTTTTAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 23 Reverse Complement Reverse Complement WWATGKTTARRATAKASTTA ATYAATGAAWACAT ATYAATGAAWAYRTTTARRATAKASTTA Direction: Forward Position #: 9 Overlap #: 6 Alignment: --------WWATGKTTARRATAKASTTA ATYAATGAAWACAT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 33 Combined Motif Original Motif Reverse Complement ATYAATGAAWAYRTTTARRATAKASTTA TWAAAKACATTAAA ATYAWTRAADACATTWAARATAKASTTA Direction: Forward Position #: 5 Overlap #: 14 Alignment: ATYAATGAAWAYRTTTARRATAKASTTA ----TWAAAKACATTAAA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 11 Combined Motif Original Motif Original Motif ATYAWTRAADACATTWAARATAKASTTA AAMATGTTTMAA ATYAWTRAAHAYRTTTAAAATAKASTTA Direction: Forward Position #: 8 Overlap #: 12 Alignment: ATYAWTRAADACATTWAARATAKASTTA -------AAMATGTTTMAA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif taaacgatgcc Original Motif Reverse Complement ATYAWTRAAHAYRTTTAAAATAKASTTA GGCATCGTTTA GGCATCRTTDAAHAYRTTTAAAATAKASTTA Direction: Forward Position #: 4 Overlap #: 8 Alignment: ---ATYAWTRAAHAYRTTTAAAATAKASTTA GGCATCGTTTA-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 12 Reverse Complement Original Motif TAASTYTATTTTAAAMMTHTTDAAKGATGCC ACAACACATTT ACAAYAMVTTTATTTTAAAMMTHTTDAAKGATGCC Direction: Forward Position #: 5 Overlap #: 7 Alignment: ----TAASTYTATTTTAAAMMTHTTDAAKGATGCC ACAACACATTT------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 18 Original Motif Original Motif ACAAYAMVTTTATTTTAAAMMTHTTDAAKGATGCC CAAAGTCCAGC CAAAGTMCARCAMVTTTATTTTAAAMMTHTTDAAKGATGCC Direction: Forward Position #: 7 Overlap #: 5 Alignment: ------ACAAYAMVTTTATTTTAAAMMTHTTDAAKGATGCC CAAAGTCCAGC------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Reverse Complement Original Motif GGCATCYTTDAAHAYRTTTAAAATAAABYTGKTGYACTTTG AACATATTTTCA RRCATMTTTTMAHAYRTTTAAAATAAABYTGKTGYACTTTG Direction: Forward Position #: 1 Overlap #: 12 Alignment: GGCATCYTTDAAHAYRTTTAAAATAAABYTGKTGYACTTTG AACATATTTTCA----------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 47 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 47 CTCF Original Motif Reverse Complement YGCCACCTDSTGGY BMSMGCCYMCTKSTGGMHM BMSCGCCMCCTDSTGGHHM Direction: Backward Position #: 3 Overlap #: 14 Alignment: ---YGCCACCTDSTGGY-- BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Original Motif BMSCGCCMCCTDSTGGHHM CAGTGCTCCACTGTGBT BAGYGCYCCMYTGTGGTHM Direction: Forward Position #: 1 Overlap #: 17 Alignment: BMSCGCCMCCTDSTGGHHM CAGTGCTCCACTGTGBT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Reverse Complement Reverse Complement YDACCACAKYGGKGCMCTB AGTGCTCCACTGTGDTG AGTBCWCCACWGTGGTGCMCTB Direction: Forward Position #: 4 Overlap #: 14 Alignment: ---YDACCACAKYGGKGCMCTB AGTGCTCCACTGTGDTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif BAGYGCACCACWGTGGWGBACT AGTGCTCCACTGTGGTGTCACAGT AGTGCTCCACTGTGGTGTCACAGTGCACCACWGTGGWGBACT Direction: Forward Position #: 21 Overlap #: 4 Alignment: --------------------BAGYGCACCACWGTGGWGBACT AGTGCTCCACTGTGGTGTCACAGT------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Reverse Complement AGTGCTCCACTGTGGTGTCACAGTGCACCACWGTGGWGBACT VCTSTGKSCMKBCTRCYCTK AGTGCTCCACTGTGSTGTSACMVTGCWVCMCWGTGGWGBACT Direction: Forward Position #: 14 Overlap #: 20 Alignment: AGTGCTCCACTGTGGTGTCACAGTGCACCACWGTGGWGBACT -------------VCTSTGKSCMKBCTRCYCTK--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Original Motif AGTGCTCCACTGTGSTGTSACMVTGCWVCMCWGTGGWGBACT CHHCHBTCCTSCYTCTGC AGTGCTCCACTGTGSTGTSACMVTBCWVCHYBSTGSHBCWSY Direction: Forward Position #: 25 Overlap #: 18 Alignment: AGTGCTCCACTGTGSTGTSACMVTGCWVCMCWGTGGWGBACT ------------------------CHHCHBTCCTSCYTCTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif AGTGCTCCACTGTGSTGTSACMVTBCWVCHYBSTGSHBCWSY VDBHMAGGTCACCCTGACCY AGTGCTCCACTGTGSTGTSACMVTBVDVCHHBGTSVHBCTGHCCY Direction: Forward Position #: 26 Overlap #: 17 Alignment: AGTGCTCCACTGTGSTGTSACMVTBCWVCHYBSTGSHBCWSY--- -------------------------VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Esrrb Combined Motif Original Motif Reverse Complement AGTGCTCCACTGTGSTGTSACMVTBVDVCHHBGTSVHBCTGHCCY TGACCTTGMBBB AGTGCTCCACTGTGSTGTGACCTTGVBVHHHBGTSVHBCTGHCCY Direction: Forward Position #: 18 Overlap #: 12 Alignment: AGTGCTCCACTGTGSTGTSACMVTBVDVCHHBGTSVHBCTGHCCY -----------------TGACCTTGMBBB---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Reverse Complement Original Motif MGGHCAGBDBSACBHDDVBVCAAGGTCACASCACAGTGGAGCACT TGGAGCACTGTGACAVCACAGTGG MGGHCAGBDBSACBHTGGAGCAMKGTSACASCACAGTGGAGCACT Direction: Forward Position #: 16 Overlap #: 24 Alignment: MGGHCAGBDBSACBHDDVBVCAAGGTCACASCACAGTGGAGCACT ---------------TGGAGCACTGTGACAVCACAGTGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCCCCGCSssk Combined Motif Reverse Complement Original Motif AGTGCTCCACTGTGSTGTSACRRTGCTCCAHBGTSVHBCTGHCCY SBCCCCGCCSBB AGTGCTCCACTGTGSTGTSVCVSYGCBSCDHBGTSVHBCTGHCCY Direction: Forward Position #: 19 Overlap #: 12 Alignment: AGTGCTCCACTGTGSTGTSACRRTGCTCCAHBGTSVHBCTGHCCY ------------------SBCCCCGCCSBB--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 48 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 48 Motif 1 Original Motif Reverse Complement GCARRGGSAGS GCAGAGGSAKG GCAGAGGSAGS Direction: Forward Position #: 1 Overlap #: 11 Alignment: GCARRGGSAGS GCAGAGGSAKG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Reverse Complement Original Motif SCTSCCTCTGC CHHCHBTCCTSCYTCTGC CHHCHBTCCTSCYYCTSCCTCTGC Direction: Forward Position #: 14 Overlap #: 5 Alignment: -------------SCTSCCTCTGC CHHCHBTCCTSCYTCTGC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Reverse Complement CHHCHBTCCTSCYYCTSCCTCTGC BMSMGCCYMCTKSTGGMHM CHHMVHKCCYSCTBSTGSCBMTGC Direction: Forward Position #: 3 Overlap #: 19 Alignment: CHHCHBTCCTSCYYCTSCCTCTGC --BMSMGCCYMCTKSTGGMHM--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Original Motif CHHMVHKCCYSCTBSTGSCBMTGC CTGCTGBDBBDGBD CHHMVCDSCTGCHBSTGBVBMTGC Direction: Forward Position #: 6 Overlap #: 14 Alignment: CHHMVHKCCYSCTBSTGSCBMTGC -----CTGCTGBDBBDGBD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif GCARVVBCASBHGCAGSDGVRHDG RAGKGMAGVRRGSRCASAGV GCARVVBCASBHGMRGSVDGVVRGSRCASAGV Direction: Forward Position #: 13 Overlap #: 12 Alignment: GCARVVBCASBHGCAGSDGVRHDG-------- ------------RAGKGMAGVRRGSRCASAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 Combined Motif Original Motif Reverse Complement GCARVVBCASBHGMRGSVDGVVRGSRCASAGV CKGGDTBDMMCTGG GCARVVBCASBHGMRGSCDGGDDBVVMMBRGV Direction: Forward Position #: 18 Overlap #: 14 Alignment: GCARVVBCASBHGMRGSVDGVVRGSRCASAGV -----------------CKGGDTBDMMCTGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif GCARVVBCASBHGMRGSCDGGDDBVVMMBRGV TTCAGCACCATGGACAGCKCC TKCAGVACCABGGACAGSVBSGDDBVVMMBRGV Direction: Forward Position #: 2 Overlap #: 20 Alignment: -GCARVVBCASBHGMRGSCDGGDDBVVMMBRGV TTCAGCACCATGGACAGCKCC------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif VCMBRRBVBDDCSBVSCTGTCCVTGGTVCTGYA VDBHMAGGTCACCCTGACCY VCMBRRBVBDDCSBVSCTVBVCVWGGTSMYSBWGACCY Direction: Forward Position #: 19 Overlap #: 15 Alignment: VCMBRRBVBDDCSBVSCTGTCCVTGGTVCTGYA----- ------------------VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Reverse Complement MGGTCWBSMYSACCWVGVVVAGSVBSGDDBVVMMBRGV CTSTGTBKMCTGH MGGTCWBSMYSACCWVGVVVAGSCHSKRKBKMMHGDGV Direction: Forward Position #: 24 Overlap #: 13 Alignment: MGGTCWBSMYSACCWVGVVVAGSVBSGDDBVVMMBRGV -----------------------CTSTGTBKMCTGH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif MGGTCWBSMYSACCWVGVVVAGSCHSKRKBKMMHGDGV VHRGGTCABDBTGMCCTB MGGTCWBSMYSACCWVGVVVAGSCHVDGGTCAVDBDGHCCTB Direction: Forward Position #: 25 Overlap #: 14 Alignment: MGGTCWBSMYSACCWVGVVVAGSCHSKRKBKMMHGDGV---- ------------------------VHRGGTCABDBTGMCCTB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 49 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 TFM13 Original Motif Reverse Complement AAAAAAAAAAAAAT WHAATTAAARAARAAAAAAA WHAATTAAAAAAAAAAAAAW Direction: Backward Position #: 1 Overlap #: 14 Alignment: ------AAAAAAAAAAAAAT WHAATTAAARAARAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif WTTTTTTTTTTTTTAATTDW KTTTTTTKTTTTTTDAAB WTTTTTTTTTTTTTDAWWBW Direction: Forward Position #: 2 Overlap #: 18 Alignment: WTTTTTTTTTTTTTAATTDW -KTTTTTTKTTTTTTDAAB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Reverse Complement Original Motif WBWWTDAAAAAAAAAAAAAW HAAAAHAAARMAAA WBWWWAAAAAAAAMAAAAAW Direction: Forward Position #: 4 Overlap #: 14 Alignment: WBWWTDAAAAAAAAAAAAAW ---HAAAAHAAARMAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 23 Reverse Complement Original Motif WTTTTTYTTTTTTTTWWWBW ATGTWTTCATTMAT ATKTTTTYWTTHWTTWWWBW Direction: Forward Position #: 1 Overlap #: 14 Alignment: WTTTTTYTTTTTTTTWWWBW ATGTWTTCATTMAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 33 Combined Motif Reverse Complement Reverse Complement WBWWWAAWHAAWKAAAAYAT TWAAAKACATTAAA WBTWAAAKAMATTAAAAYAT Direction: Forward Position #: 3 Overlap #: 14 Alignment: WBWWWAAWHAAWKAAAAYAT --TWAAAKACATTAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Reverse Complement Reverse Complement ATKTTTTAATRTRTTTWABW TAGTTTYAKCTTT TAGTTTHWKYTTTAATRTRTTTWABW Direction: Forward Position #: 7 Overlap #: 7 Alignment: ------ATKTTTTAATRTRTTTWABW TAGTTTYAKCTTT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 45 Original Motif Original Motif TAGTTTHWKYTTTAATRTRTTTWABW TAASTCTWTTTTAA TARBTYTWTTTTWAATRTRTTTWABW Direction: Forward Position #: 1 Overlap #: 14 Alignment: TAGTTTHWKYTTTAATRTRTTTWABW TAASTCTWTTTTAA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Original Motif Original Motif TARBTYTWTTTTWAATRTRTTTWABW AACATATTTTCA AACATADTTTYATTTTWAATRTRTTTWABW Direction: Forward Position #: 5 Overlap #: 8 Alignment: ----TARBTYTWTTTTWAATRTRTTTWABW AACATATTTTCA------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 11 Combined Motif Reverse Complement Original Motif WBTWAAAKAMATTWAAAATKAAADTATGTT AAMATGTTTMAA WBTWAAAHAYRTTTAAAATKAAADTATGTT Direction: Forward Position #: 6 Overlap #: 12 Alignment: WBTWAAAKAMATTWAAAATKAAADTATGTT -----AAMATGTTTMAA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 31 Reverse Complement Reverse Complement AACATADTTTYATTTTAAAMMTHTTTWABW AAAATCAACAA AAAATCAACAWADTTTYATTTTAAAMMTHTTTWABW Direction: Forward Position #: 7 Overlap #: 5 Alignment: ------AACATADTTTYATTTTAAAMMTHTTTWABW AAAATCAACAA------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 50 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 50 Motif 41 Reverse Complement Reverse Complement YTTCC TTTCCTCCA TTTCCTCCA Direction: Backward Position #: 5 Overlap #: 5 Alignment: YTTCC---- TTTCCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 21 Original Motif Original Motif TTTCCTCCA CTGCTTTCCMAA CTGYTTYCYCMA Direction: Forward Position #: 4 Overlap #: 9 Alignment: ---TTTCCTCCA CTGCTTTCCMAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 43 Original Motif Reverse Complement CTGYTTYCYCMA TGCCTTTCYTT TGCCYTKCTTTCYCMA Direction: Forward Position #: 5 Overlap #: 7 Alignment: ----CTGYTTYCYCMA TGCCTTTCYTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 44 Original Motif Reverse Complement TGCCYTKCTTTCYCMA TTCTTYCATT TTCTKCCHTTCTTTCYCMA Direction: Forward Position #: 4 Overlap #: 7 Alignment: ---TGCCYTKCTTTCYCMA TTCTTYCATT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Reverse Complement TTCTKCCHTTCTTTCYCMA AAGSATTTTCA AAGSATTYTBMCHTTCTTTCYCMA Direction: Forward Position #: 6 Overlap #: 6 Alignment: -----TTCTKCCHTTCTTTCYCMA AAGSATTTTCA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Original Motif Original Motif AAGSATTYTBMCHTTCTTTCYCMA AACATATTTTCA AAMRBATTTTCACHTTCTTTCYCMA Direction: Forward Position #: 2 Overlap #: 11 Alignment: -AAGSATTYTBMCHTTCTTTCYCMA AACATATTTTCA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Original Motif Original Motif AAMRBATTTTCACHTTCTTTCYCMA AGAGAAAG AGAGAAAGBATTTTCACHTTCTTTCYCMA Direction: Forward Position #: 5 Overlap #: 4 Alignment: ----AAMRBATTTTCACHTTCTTTCYCMA AGAGAAAG--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 28 Reverse Complement Original Motif TYGKGAAAGAAHGTGAAAATVCTTTCTCT ATTTAGTAAA ATTTRGKAAAGAAHGTGAAAATVCTTTCTCT Direction: Forward Position #: 3 Overlap #: 8 Alignment: --TYGKGAAAGAAHGTGAAAATVCTTTCTCT ATTTAGTAAA--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 51 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A PPARGRXRA Original Motif Original Motif RGGBCAAAGKYCA BTRGGDCARAGGKCA BTRGGBCAAAGGTCA Direction: Forward Position #: 3 Overlap #: 13 Alignment: --RGGBCAAAGKYCA BTRGGDCARAGGKCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Reverse Complement Original Motif TGACCTTTGBCCKAB TGAMCTTTGMMCYT TGACCTTTGVMCBHB Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGACCTTTGBCCKAB TGAMCTTTGMMCYT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Reverse Complement Original Motif BHVGRVCAAAGGTCA AAAGGTCAAAGGTCAAC VAAGGTCAAAGGTCAAC Direction: Forward Position #: 1 Overlap #: 15 Alignment: BHVGRVCAAAGGTCA-- AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement GTTGACCTTTGACCTTB AGTGSWSCACTGTGAMAMCACAGTG AGTGBTGMMCTKTGACMHYACAGTG Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---GTTGACCTTTGACCTTB----- AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Reverse Complement CACTGTKHRGTCAYAGYRCAVCACT VCTSTGKSCMKBCTRCYCTK CACTGTGBVVHCACWGYVCWVCACT Direction: Forward Position #: 2 Overlap #: 20 Alignment: CACTGTKHRGTCAYAGYRCAVCACT -VCTSTGKSCMKBCTRCYCTK---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Reverse Complement Original Motif AGTGVWGBKCWGTGDVVVCACAGTG TGGAGCACTGTGACAVCACAGTGG AGTGVAGCACTGTGACAVCACAGTGG Direction: Forward Position #: 3 Overlap #: 23 Alignment: AGTGVWGBKCWGTGDVVVCACAGTG- --TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Reverse Complement CCACTGTGVTGTCACAGTGCTVCACT BAGGYCABHBTGACCKHV CCACTSWGGTSWCHCWGWSCTHBACT Direction: Forward Position #: 6 Overlap #: 18 Alignment: CCACTGTGVTGTCACAGTGCTVCACT -----BAGGYCABHBTGACCKHV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Reverse Complement Reverse Complement AGTBDAGSWCWGHGWSACCWSAGTGG GGAGCACTGTGACACCACA AGTGGAGCACWGTGACACCACAGTGG Direction: Forward Position #: 4 Overlap #: 19 Alignment: AGTBDAGSWCWGHGWSACCWSAGTGG ---GGAGCACTGTGACACCACA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement AGTGGAGCACWGTGACACCACAGTGG MGGTCAGGGTGACCTRDBHV AGTGGAGCACWGTGASRYCASRGTGRCCTRDBHV Direction: Forward Position #: 15 Overlap #: 12 Alignment: AGTGGAGCACWGTGACACCACAGTGG-------- --------------MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Reverse Complement Reverse Complement VDBHMAGGMCACKSTGKMSTCACWGTGCTCCACT GGYGCTGTCCATGGTGCTGAA VDBHMAGGMCASBBKSTSYYCAYRGTGCTSMACT Direction: Forward Position #: 12 Overlap #: 21 Alignment: VDBHMAGGMCACKSTGKMSTCACWGTGCTCCACT -----------GGYGCTGTCCATGGTGCTGAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 52 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 NR1H2RXRA Original Motif Reverse Complement TGAMCTTTGMMCYT GTTGACCTTTGACCTTT GTTGACCTTTGACCTTT Direction: Backward Position #: 2 Overlap #: 14 Alignment: --TGAMCTTTGMMCYT- GTTGACCTTTGACCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Reverse Complement Original Motif AAAGGTCAAAGGTCAAC BTRGGDCARAGGKCA VDRGGKCAAAGGTCAAC Direction: Forward Position #: 1 Overlap #: 15 Alignment: AAAGGTCAAAGGTCAAC BTRGGDCARAGGKCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement GTTGACCTTTGRCCKDB AGTGSWSCACTGTGAMAMCACAGTG AGTGBWGMMCTKTGACMHCACAGTG Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---GTTGACCTTTGRCCKDB----- AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Reverse Complement CACTGTGHRGTCAYAGYRCWVCACT VCTSTGKSCMKBCTRCYCTK CACTSTVHGGBCAYASTRCHMYDCT Direction: Forward Position #: 4 Overlap #: 20 Alignment: CACTGTGHRGTCAYAGYRCWVCACT ---VCTSTGKSCMKBCTRCYCTK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Reverse Complement AGDMRHGMASTMTGBCCHVASAGTG BAGGYCABHBTGACCKHV AGBMGDBCABHVTGDCCDHDSAGTG Direction: Forward Position #: 3 Overlap #: 18 Alignment: AGDMRHGMASTMTGBCCHVASAGTG --BAGGYCABHBTGACCKHV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif CACTSDDDGGDCAVHBTGBHCYVCT TTCAGCACCATGGACAGCKCC TTCAGCACCAYKGACAGSDCMVHBTGBHCYVCT Direction: Forward Position #: 9 Overlap #: 13 Alignment: --------CACTSDDDGGDCAVHBTGBHCYVCT TTCAGCACCATGGACAGCKCC------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Reverse Complement Reverse Complement AGBMGDBCABHVYGDSCTGTCYKTGGTGCTGAA CCACTGTGVTGTCACAGTGCTCCA AGBMGDBCACTGTGDTSTCACMGTGSTSCWGAA Direction: Forward Position #: 7 Overlap #: 24 Alignment: AGBMGDBCABHVYGDSCTGTCYKTGGTGCTGAA ------CCACTGTGVTGTCACAGTGCTCCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Reverse Complement Original Motif TTCWGSASCACYGTGASAHCACAGTGBHCYVCT TGTGGTGTCACAGTGCTCC TTCWGSASCACTGTGRTRTCACAGTGCTCCVCT Direction: Forward Position #: 12 Overlap #: 19 Alignment: TTCWGSASCACYGTGASAHCACAGTGBHCYVCT -----------TGTGGTGTCACAGTGCTCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Reverse Complement Original Motif AGBGGAGCACTGTGAMAKCACAGTGSTSCWGAA RGGBCAAAGKYCA AGBGGAGCAVKGTSAMAGBHCAGTGSTSCWGAA Direction: Forward Position #: 10 Overlap #: 13 Alignment: AGBGGAGCACTGTGAMAKCACAGTGSTSCWGAA ---------RGGBCAAAGKYCA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif TTCWGSASCACTGHBCTYTSACYVTGCTCCVCT VDBHMAGGTCACCCTGACCY TTCWGSASCACTGHBCTYBBVCHVKGBYMCHCTGACCY Direction: Forward Position #: 19 Overlap #: 15 Alignment: TTCWGSASCACTGHBCTYTSACYVTGCTCCVCT----- ------------------VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 53 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement VDBHMAGGTCACCCTGACCY CCACTGTGVTGTCACAGTGCTCCA CCACTGTVRKGTCACMSTGMYCYA Direction: Backward Position #: 2 Overlap #: 20 Alignment: ---VDBHMAGGTCACCCTGACCY- CCACTGTGVTGTCACAGTGCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Original Motif CCACTGTVRKGTCACMSTGMYCYA CACTGTGRTRTCACAGTGSWSCACT CACTGTGRTRTCACAGTGSWCCACTGTVRKGTCACMSTGMYCYA Direction: Forward Position #: 21 Overlap #: 5 Alignment: --------------------CCACTGTVRKGTCACMSTGMYCYA CACTGTGRTRTCACAGTGSWSCACT------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Reverse Complement CACTGTGRTRTCACAGTGSWCCACTGTVRKGTCACMSTGMYCYA VCTSTGKSCMKBCTRCYCTK CACTGTGRTRTCACAGTGSWCCACTGTVRKGDCWCWGTGCYBYMTRCYCTK Direction: Forward Position #: 32 Overlap #: 13 Alignment: CACTGTGRTRTCACAGTGSWCCACTGTVRKGTCACMSTGMYCYA------- -------------------------------VCTSTGKSCMKBCTRCYCTK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Original Motif Reverse Complement CACTGTGRTRTCACAGTGSWCCACTGTVRKGDCWCWGTGCYBYMTRCYCTK GGAGCACTGTGACACCACA CACTGTGRTRTCACAGTGSWSCACTGTGABRBCACAGTGCYBYMTRCYCTK Direction: Forward Position #: 18 Overlap #: 19 Alignment: CACTGTGRTRTCACAGTGSWCCACTGTVRKGDCWCWGTGCYBYMTRCYCTK -----------------GGAGCACTGTGACACCACA--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Reverse Complement Original Motif RAGKGMAYKBKGCACTGTGBKBTCACAGTGSWSCACTGTGAMAMCACAGTG YDRCCASYAGRKGGCRSYV RAGKGMAYKBKGCACTGTGBKDYCACHRKGBKGCACTGTGAMAMCACAGTG Direction: Forward Position #: 20 Overlap #: 19 Alignment: RAGKGMAYKBKGCACTGTGBKBTCACAGTGSWSCACTGTGAMAMCACAGTG -------------------YDRCCASYAGRKGGCRSYV------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Reverse Complement CACTGTGRTRTCACAGTGCYBCYKHGTGKHYVCACAGTGCYBYMTRCYCTK BAGGYCABHBTGACCKHV CACTGTGRTRTCACAGTGCYBCYKHGTGKBHRSWCABBSYGHCCTDVYCTK Direction: Forward Position #: 30 Overlap #: 18 Alignment: CACTGTGRTRTCACAGTGCYBCYKHGTGKHYVCACAGTGCYBYMTRCYCTK -----------------------------BAGGYCABHBTGACCKHV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Original Motif CACTGTGRTRTCACAGTGCYBCYKHGTGKBHRSWCABBSYGHCCTDVYCTK CHHCHBTCCTSCYTCTGC CACTGTGRTRTCACAGTGCYBCYKHGTGKBHRBHHMVBBYSWSCYHSTVYK Direction: Forward Position #: 33 Overlap #: 18 Alignment: CACTGTGRTRTCACAGTGCYBCYKHGTGKBHRSWCABBSYGHCCTDVYCTK --------------------------------CHHCHBTCCTSCYTCTGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Original Motif RMVASHMGSWSKVVVYDHBMHBYCACHRKGBKGCACTGTGAMAMCACAGTG CACACACACACWCACACA RMVASHMGSWSKVVVYDHBCHVACACAVDVDSVCACWGTGAMAMCACAGTG Direction: Forward Position #: 20 Overlap #: 18 Alignment: RMVASHMGSWSKVVVYDHBMHBYCACHRKGBKGCACTGTGAMAMCACAGTG -------------------CACACACACACWCACACA-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Reverse Complement CACTGTGRTRTCACWGTGBSHVDVTGTGTVHGBHHMVBBYSWSCYHSTVYK GGYGCTGTCCATGGTGCTGAA GGYGCTGTCCAYKGTGCTGHMACWGTGBSHVDVTGTGTVHGBHHMVBBYSWSCYHSTVYK Direction: Forward Position #: 10 Overlap #: 12 Alignment: ---------CACTGTGRTRTCACWGTGBSHVDVTGTGTVHGBHHMVBBYSWSCYHSTVYK GGYGCTGTCCATGGTGCTGAA--------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Reverse Complement GGYGCTGTCCAYKGTGCTGHMACWGTGBSHVDVTGTGTVHGBHHMVBBYSWSCYHSTVYK ACTGTGGTGTCACART ACKGTGSTGTCMMMKKTGCTGHMACWGTGBSHVDVTGTGTVHGBHHMVBBYSWSCYHSTVYK Direction: Forward Position #: 3 Overlap #: 14 Alignment: --GGYGCTGTCCAYKGTGCTGHMACWGTGBSHVDVTGTGTVHGBHHMVBBYSWSCYHSTVYK ACTGTGGTGTCACART---------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 54 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Esrrb NR2F1 Reverse Complement Original Motif TGACCTTGMBBB TGAMCTTTGMMCYT TGWSMYYTKRMCHB Direction: Backward Position #: 1 Overlap #: 12 Alignment: --TGACCTTGMBBB TGAMCTTTGMMCYT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Reverse Complement Reverse Complement VDGYMYAKKRSWCA TGRCCTKTGHCCKAB TGRCCTKTGHCMKVBMYAKKRSWCA Direction: Forward Position #: 12 Overlap #: 4 Alignment: -----------VDGYMYAKKRSWCA TGRCCTKTGHCCKAB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Original Motif Reverse Complement TGRCCTKTGHCMKVBMYAKKRSWCA TGMYCTTTGBCCK TGRCCTTKVYCHTTBVYMKKRSWCA Direction: Forward Position #: 7 Overlap #: 13 Alignment: TGRCCTKTGHCMKVBMYAKKRSWCA ------TGMYCTTTGBCCK------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Original Motif Reverse Complement TGRCCTTKVYCHTTBVYMKKRSWCA GTTGACCTTTGACCTTT GTTGACCTTTGACCTTBVYMKKRSWCA Direction: Forward Position #: 3 Overlap #: 15 Alignment: --TGRCCTTKVYCHTTBVYMKKRSWCA GTTGACCTTTGACCTTT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement GTTGACCTTTGACCTTBVYMKKRSWCA MGGTCAGGGTGACCTRDBHV VKKKMMCKKTGACCTDBBHVKKRSWCA Direction: Forward Position #: 1 Overlap #: 20 Alignment: GTTGACCTTTGACCTTBVYMKKRSWCA MGGTCAGGGTGACCTRDBHV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Reverse Complement TGWSMYYBDBBDAGGTCARRGRRYYRV BAGGYCABHBTGACCKHV TGWVMBBYVVBVVKGWCMDDGRRYYRV Direction: Forward Position #: 4 Overlap #: 18 Alignment: TGWSMYYBDBBDAGGTCARRGRRYYRV ---BAGGYCABHBTGACCKHV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif VKKKMMCDHYGWCRBBBBVMBBYVWCA TTCAGCACCATGGACAGCKCC TTCAGBACCDHGGACAGBDBBMBBYVWCA Direction: Forward Position #: 3 Overlap #: 19 Alignment: --VKKKMMCDHYGWCRBBBBVMBBYVWCA TTCAGCACCATGGACAGCKCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Reverse Complement Original Motif TGWVMBBYBBHBCTGTCCHDGGTBCTGAA TGTGGTGTCACAGTGCTCC TGTGGTGTCACDBTGCTCYGTCCHDGGTBCTGAA Direction: Forward Position #: 6 Overlap #: 14 Alignment: -----TGWVMBBYBBHBCTGTCCHDGGTBCTGAA TGTGGTGTCACAGTGCTCC--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Original Motif Reverse Complement TGTGGTGTCACDBTGCTCYGTCCHDGGTBCTGAA CCACTGTGVTGTCACAGTGCTCCA TGTGGTGHCACTGTGBTSTSWCHVTGSTCCWGAA Direction: Forward Position #: 8 Overlap #: 24 Alignment: TGTGGTGTCACDBTGCTCYGTCCHDGGTBCTGAA -------CCACTGTGVTGTCACAGTGCTCCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement TTCWGGASCAVHGWSASABCACAGTGHCACCACA AGTGSWSCACTGTGAMAMCACAGTG AKTSBDSMACWGTGWCAVMACASWGTGHCACCACA Direction: Forward Position #: 2 Overlap #: 24 Alignment: -TTCWGGASCAVHGWSASABCACAGTGHCACCACA AGTGSWSCACTGTGAMAMCACAGTG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 55 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ZEB1 Motif 47 Original Motif Original Motif CACCTD YGCCACCTDSTGGY YGCCACCTDSTGGY Direction: Backward Position #: 6 Overlap #: 6 Alignment: ---CACCTD----- YGCCACCTDSTGGY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Original Motif Original Motif YGCCACCTDSTGGY CWGAGCCAYCTYTC CWGHGCCACCTBBYGGY Direction: Forward Position #: 4 Overlap #: 11 Alignment: ---YGCCACCTDSTGGY CWGAGCCAYCTYTC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CTCF Original Motif Reverse Complement CWGHGCCACCTBBYGGY BMSMGCCYMCTKSTGGMHM CWGMGCCMCCTBSTGGHHM Direction: Forward Position #: 1 Overlap #: 17 Alignment: CWGHGCCACCTBBYGGY-- BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RORA_1 Reverse Complement Reverse Complement YDDCCASVAGGYGGCRCWG TGACCTDVWT TGACCWBVAKGYGGCRCWG Direction: Forward Position #: 1 Overlap #: 10 Alignment: YDDCCASVAGGYGGCRCWG TGACCTDVWT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Reverse Complement TGACCWBVAKGYGGCRCWG GGYGCTGTCCATGGTGCTGAA KGHSCTGTMSRTGGYGCTGAA Direction: Forward Position #: 1 Overlap #: 19 Alignment: TGACCWBVAKGYGGCRCWG-- GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Esrrb Original Motif Reverse Complement KGHSCTGTMSRTGGYGCTGAA TGACCTTGMBBB TGACCTKBMBVHGGYGCTGAA Direction: Forward Position #: 1 Overlap #: 12 Alignment: KGHSCTGTMSRTGGYGCTGAA TGACCTTGMBBB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Original Motif Reverse Complement TGACCTKBMBVHGGYGCTGAA GTTGACCTTTGACCTTT GTTGACCTTTGACCTTBMBVHGGYGCTGAA Direction: Forward Position #: 10 Overlap #: 8 Alignment: ---------TGACCTKBMBVHGGYGCTGAA GTTGACCTTTGACCTTT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 46 Original Motif Reverse Complement GTTGACCTTTGACCTTBMBVHGGYGCTGAA TATKCTAAACCTAT TATKCTWRACCTWTGACCTTBMBVHGGYGCTGAA Direction: Forward Position #: 5 Overlap #: 10 Alignment: ----GTTGACCTTTGACCTTBMBVHGGYGCTGAA TATKCTAAACCTAT-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Reverse Complement TATKCTWRACCTWTGACCTTBMBVHGGYGCTGAA TGRCCTKTGHCCKAB TATKCTTGACCTWTGMCCTDBMBVHGGYGCTGAA Direction: Forward Position #: 7 Overlap #: 15 Alignment: TATKCTWRACCTWTGACCTTBMBVHGGYGCTGAA ------TGRCCTKTGHCCKAB------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR4A2 Original Motif Reverse Complement TATKCTTGACCTWTGMCCTDBMBVHGGYGCTGAA GTGACCTT GTRWBCTTGACCTWTGMCCTDBMBVHGGYGCTGAA Direction: Forward Position #: 2 Overlap #: 7 Alignment: -TATKCTTGACCTWTGMCCTDBMBVHGGYGCTGAA GTGACCTT--------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 56 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mycn Myc Reverse Complement Reverse Complement GCCACGTGSD DCCACGTGCV GCCACGTGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCCACGTGSD DCCACGTGCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sscCCCGCGcs Reverse Complement Reverse Complement VSCACGTGGC SBCGCGGGGSB VSCRCGKGGVB Direction: Forward Position #: 1 Overlap #: 10 Alignment: VSCACGTGGC- SBCGCGGGGSB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CTCF Reverse Complement Original Motif BVCCYCGMGSV YDRCCASYAGRKGGCRSYV YBVCCHCGAGVKGGCRSYV Direction: Forward Position #: 2 Overlap #: 11 Alignment: -BVCCYCGMGSV------- YDRCCASYAGRKGGCRSYV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCCCCGCSssk Combined Motif Original Motif Reverse Complement YBVCCHCGAGVKGGCRSYV BBSGGCGGGGBS YBVCCVSGMGGGGGCRSYV Direction: Forward Position #: 4 Overlap #: 12 Alignment: YBVCCHCGAGVKGGCRSYV ---BBSGGCGGGGBS---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 47 Original Motif Reverse Complement YBVCCVSGMGGGGGCRSYV KCCASDAGGTGGCK KYCACBVGGYGGSGGCRSYV Direction: Forward Position #: 2 Overlap #: 13 Alignment: -YBVCCVSGMGGGGGCRSYV KCCASDAGGTGGCK------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Original Motif BMSMGCCSCCKCCBBGTGKY CACTGTGRTRTCACAGTGSWSCACT CACTGTGRTRTCACAGTGBWSCRCYSCCKCCBBGTGKY Direction: Forward Position #: 19 Overlap #: 7 Alignment: ------------------BMSMGCCSCCKCCBBGTGKY CACTGTGRTRTCACAGTGSWSCACT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement CACTGTGRTRTCACAGTGBWSCRCYSCCKCCBBGTGKY MGGTCAGGGTGACCTRDBHV CACTGTGRTRTCACAGTGBWSCRCYVSSKCMBBGTGDCCTRDBHV Direction: Forward Position #: 26 Overlap #: 13 Alignment: CACTGTGRTRTCACAGTGBWSCRCYSCCKCCBBGTGKY------- -------------------------MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Reverse Complement CACTGTGRTRTCACAGTGBWSCRCYVSSKCMBBGTGDCCTRDBHV ABCACAGTGGAGCACTG ABCACWGTGGWGYMMYRGTGBWSCRCYVSSKCMBBGTGDCCTRDBHV Direction: Forward Position #: 3 Overlap #: 15 Alignment: --CACTGTGRTRTCACAGTGBWSCRCYVSSKCMBBGTGDCCTRDBHV ABCACAGTGGAGCACTG------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Original Motif Reverse Complement ABCACWGTGGWGYMMYRGTGBWSCRCYVSSKCMBBGTGDCCTRDBHV TGMYCTTTGBCCK ABCACWGTGGWGYMMYRGTGBWSCRCYVSSTSMBCKTKGBCYDDBHV Direction: Forward Position #: 31 Overlap #: 13 Alignment: ABCACWGTGGWGYMMYRGTGBWSCRCYVSSKCMBBGTGDCCTRDBHV ------------------------------TGMYCTTTGBCCK---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif ABCACWGTGGWGYMMYRGTGBWSCRCYVSSTSMBCKTKGBCYDDBHV AGTGCTCCACTGTGGTGTCACAGT AGTGCWCCACTGTGGTGTCACAGTGBWSCRCYVSSTSMBCKTKGBCYDDBHV Direction: Forward Position #: 6 Overlap #: 19 Alignment: -----ABCACWGTGGWGYMMYRGTGBWSCRCYVSSTSMBCKTKGBCYDDBHV AGTGCTCCACTGTGGTGTCACAGT---------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 57 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST TFM12 Reverse Complement Reverse Complement GGYGCTGTCCATGGTGCTGAA VCTSTGKSCMKBCTRCYCTK GVCKCTGTCCMTGSTGCTVWD Direction: Backward Position #: 1 Overlap #: 20 Alignment: GGYGCTGTCCATGGTGCTGAA -VCTSTGKSCMKBCTRCYCTK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif GVCKCTGTCCMTGSTGCTVWD AGTGCTCCACTGTGGTGTCACAGT AGTGCTCCACKGYGSTGTCMCWGBTGCTVWD Direction: Forward Position #: 11 Overlap #: 14 Alignment: ----------GVCKCTGTCCMTGSTGCTVWD AGTGCTCCACTGTGGTGTCACAGT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement AGTGCTCCACKGYGSTGTCMCWGBTGCTVWD MGGTCAGGGTGACCTRDBHV AGTGCTCCACKGYGSTGTCMMDGTYRSBSTGACCTRDBHV Direction: Forward Position #: 21 Overlap #: 11 Alignment: AGTGCTCCACKGYGSTGTCMCWGBTGCTVWD--------- --------------------MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Original Motif AGTGCTCCACKGYGSTGTCMMDGTYRSBSTGACCTRDBHV CHHCHBTCCTSCYTCTGC AGTGCTCCACKGYGSTGTCMMDGTYVVHSHBDCCTGCBHVTGC Direction: Forward Position #: 26 Overlap #: 15 Alignment: AGTGCTCCACKGYGSTGTCMMDGTYRSBSTGACCTRDBHV--- -------------------------CHHCHBTCCTSCYTCTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Original Motif AGTGCTCCACKGYGSTGTCMMDGTYVVHSHBDCCTGCBHVTGC CAGTGCTCCACTGTGBT CAGTGCTCCACTGTGBTGTCMMDGTYVVHSHBDCCTGCBHVTGC Direction: Forward Position #: 2 Overlap #: 16 Alignment: -AGTGCTCCACKGYGSTGTCMMDGTYVVHSHBDCCTGCBHVTGC CAGTGCTCCACTGTGBT--------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Original Motif CAGTGCTCCACTGTGBTGTCMMDGTYVVHSHBDCCTGCBHVTGC AMTGTGACACCACAGT AMYRKKRCWCCACWGTGBTGTCMMDGTYVVHSHBDCCTGCBHVTGC Direction: Forward Position #: 3 Overlap #: 14 Alignment: --CAGTGCTCCACTGTGBTGTCMMDGTYVVHSHBDCCTGCBHVTGC AMTGTGACACCACAGT------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Original Motif Reverse Complement AMYRKKRCWCCACWGTGBTGTCMMDGTYVVHSHBDCCTGCBHVTGC CCACTGTGVTGTCACAGTGCTCCA AMYRKKRCWCCACTGTGBTGTCACAGTBCTBCABDCCTGCBHVTGC Direction: Forward Position #: 10 Overlap #: 24 Alignment: AMYRKKRCWCCACWGTGBTGTCMMDGTYVVHSHBDCCTGCBHVTGC ---------CCACTGTGVTGTCACAGTGCTCCA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif AMYRKKRCWCCACTGTGBTGTCACAGTBCTBCABDCCTGCBHVTGC VHRGGTCABDBTGMCCTB AMYRKKRCWCCACTGTGBTGTCACAGTBCTHHAGGYCWBBBTSWSCTB Direction: Forward Position #: 31 Overlap #: 16 Alignment: AMYRKKRCWCCACTGTGBTGTCACAGTBCTBCABDCCTGCBHVTGC-- ------------------------------VHRGGTCABDBTGMCCTB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Original Motif Original Motif AMYRKKRCWCCACTGTGBTGTCACAGTBCTHHAGGYCWBBBTSWSCTB RGGBCAAAGKYCA AMYRKKRCWCCACTGTGBTGTCACAGTBCTHHRGGBCARVGKBHVCTB Direction: Forward Position #: 33 Overlap #: 13 Alignment: AMYRKKRCWCCACTGTGBTGTCACAGTBCTHHAGGYCWBBBTSWSCTB --------------------------------RGGBCAAAGKYCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Reverse Complement AMYRKKRCWCCACTGTGBTGTCACAGTBCTHHRGGBCARVGKBHVCTB TGRCCTKTGHCCKAB AMYRKKRCWCCACTGTGBTGTCACAGTBCTHHRGKBMMMDKTBHCCTVB Direction: Forward Position #: 35 Overlap #: 14 Alignment: AMYRKKRCWCCACTGTGBTGTCACAGTBCTHHRGGBCARVGKBHVCTB- ----------------------------------TGRCCTKTGHCCKAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 58 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Mycn Original Motif Original Motif VGCACGTGGH HSCACGTGGC VSCACGTGGC Direction: Backward Position #: 1 Overlap #: 10 Alignment: VGCACGTGGH HSCACGTGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sscCCCGCGcs Original Motif Reverse Complement VSCACGTGGC SBCGCGGGGSB VSCRCGKGGVB Direction: Forward Position #: 1 Overlap #: 10 Alignment: VSCACGTGGC- SBCGCGGGGSB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCCCCGCSssk Reverse Complement Original Motif BVCCYCGMGSV SBCCCCGCCSBB SBCCCCGCSSBB Direction: Forward Position #: 1 Overlap #: 11 Alignment: BVCCYCGMGSV- SBCCCCGCCSBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CTCF Reverse Complement Original Motif BBSSGCGGGGBS YDRCCASYAGRKGGCRSYV YDRCCASYAGRBGGCRCGVGGBS Direction: Forward Position #: 12 Overlap #: 8 Alignment: -----------BBSSGCGGGGBS YDRCCASYAGRKGGCRSYV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 47 Original Motif Original Motif YDRCCASYAGRBGGCRCGVGGBS YGCCACCTDSTGGY YGCCACCWVSWGGBGGCRCGVGGBS Direction: Forward Position #: 3 Overlap #: 12 Alignment: --YDRCCASYAGRBGGCRCGVGGBS YGCCACCTDSTGGY----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement SBCCVCGMGCCVCCWSVWGGTGGCK AGTGSWSCACTGTGAMAMCACAGTG AGTGSHSCMCTGYGMCMMCACADKGTGGCK Direction: Forward Position #: 6 Overlap #: 20 Alignment: -----SBCCVCGMGCCVCCWSVWGGTGGCK AGTGSWSCACTGTGAMAMCACAGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Original Motif Reverse Complement AGTGSHSCMCTGYGMCMMCACADKGTGGCK TGMYCTTTGBCCK TGMYMKTKGBBCVCTGYGMCMMCACADKGTGGCK Direction: Forward Position #: 5 Overlap #: 9 Alignment: ----AGTGSHSCMCTGYGMCMMCACADKGTGGCK TGMYCTTTGBCCK--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement TGMYMKTKGBBCVCTGYGMCMMCACADKGTGGCK MGGTCAGGGTGACCTRDBHV TGMYMKTKGBBCVCTGYGMVRYCASVGTGDSSYKDBHV Direction: Forward Position #: 19 Overlap #: 16 Alignment: TGMYMKTKGBBCVCTGYGMCMMCACADKGTGGCK---- ------------------MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Reverse Complement TGMYMKTKGBBCVCTGYGMVRYCASVGTGDSSYKDBHV ABCACAGTGGAGCACTG ABSACAGTGGAGCACTGYGMVRYCASVGTGDSSYKDBHV Direction: Forward Position #: 2 Overlap #: 16 Alignment: -TGMYMKTKGBBCVCTGYGMVRYCASVGTGDSSYKDBHV ABCACAGTGGAGCACTG---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif ABSACAGTGGAGCACTGYGMVRYCASVGTGDSSYKDBHV VHRGGTCABDBTGMCCTB ABSACAGTGGAGCACTGYGMVRYCAVDRKGTCABDDBVHCCTB Direction: Forward Position #: 26 Overlap #: 14 Alignment: ABSACAGTGGAGCACTGYGMVRYCASVGTGDSSYKDBHV---- -------------------------VHRGGTCABDBTGMCCTB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 59 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 TFM12 Original Motif Reverse Complement VHRGGTCABDBTGMCCTB VCTSTGKSCMKBCTRCYCTK VCHVDGGBCABBBTGMCCTB Direction: Forward Position #: 3 Overlap #: 18 Alignment: --VHRGGTCABDBTGMCCTB VCTSTGKSCMKBCTRCYCTK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Original Motif BAGGRCABBVTGVCCDVHGV TGGAGCACTGTGACAVCACAGTGG TGGAGCACTGTGACAVCACAGKGSABBVTGVCCDVHGV Direction: Forward Position #: 19 Overlap #: 6 Alignment: ------------------BAGGRCABBVTGVCCDVHGV TGGAGCACTGTGACAVCACAGTGG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Reverse Complement Original Motif VCHVDGGBCABBBTSCRCTGTGVTGTCACAGTGCTCCA CACTGTGRTRTCACAGTGSWSCACT VCHVDGGBCABBBTSCACTGTGVTGTCACAGTGCTCCACT Direction: Forward Position #: 16 Overlap #: 23 Alignment: VCHVDGGBCABBBTSCRCTGTGVTGTCACAGTGCTCCA-- ---------------CACTGTGRTRTCACAGTGSWSCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Reverse Complement VCHVDGGBCABBBTSCACTGTGVTGTCACAGTGCTCCACT GGYGCTGTCCATGGTGCTGAA VCHVDGGBCVCTSTCCAYKGTGCTGWMACAGTGCTCCACT Direction: Forward Position #: 7 Overlap #: 21 Alignment: VCHVDGGBCABBBTSCACTGTGVTGTCACAGTGCTCCACT ------GGYGCTGTCCATGGTGCTGAA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif AGTGGAGCACTGTRWCAGCACRKTGGASAGBGBCCDVHGV VDBHMAGGTCACCCTGACCY AGTGGAGCACTGTRWCAGCACRKTGGAVDBBVVSSTCASHCTGACCY Direction: Forward Position #: 28 Overlap #: 13 Alignment: AGTGGAGCACTGTRWCAGCACRKTGGASAGBGBCCDVHGV------- ---------------------------VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Reverse Complement Original Motif MGGTCAGDSTGASSBVBBDVTCCAYKGTGCTGWMACAGTGCTCCACT TGTGGTGTCACAGTGCTCC MGGTCAGDSTGASSTVTGBTKYCACDGTGCTSHMACAGTGCTCCACT Direction: Forward Position #: 15 Overlap #: 19 Alignment: MGGTCAGDSTGASSBVBBDVTCCAYKGTGCTGWMACAGTGCTCCACT --------------TGTGGTGTCACAGTGCTCC-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Original Motif AGTGGAGCACTGTRDSAGCACDGTGMYABCAVASSTCASHCTGACCY CHHCHBTCCTSCYTCTGC AGTGGAGCACTGTRDSAGCACDGTGMYABCABHBSHBWSCHBSMYCTGC Direction: Forward Position #: 32 Overlap #: 16 Alignment: AGTGGAGCACTGTRDSAGCACDGTGMYABCAVASSTCASHCTGACCY-- -------------------------------CHHCHBTCCTSCYTCTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Original Motif GCAGKRSVHGSWBHSBHBTGBTKYCACDGTGCTSHMACAGTGCTCCACT BTRGGDCARAGGKCA GCAGKRSVHGSWBHSBHBTGBTKYCACDGTGCTVVVACARWGSTCMACT Direction: Forward Position #: 32 Overlap #: 15 Alignment: GCAGKRSVHGSWBHSBHBTGBTKYCACDGTGCTSHMACAGTGCTCCACT -------------------------------BTRGGDCARAGGKCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Original Motif Reverse Complement GCAGKRSVHGSWBHSBHBTGBTKYCACDGTGCTVVVACARWGSTCMACT GAKAGKTGGCTCWG GRBAGKTGGCKCWGHSBHBTGBTKYCACDGTGCTVVVACARWGSTCMACT Direction: Forward Position #: 2 Overlap #: 13 Alignment: -GCAGKRSVHGSWBHSBHBTGBTKYCACDGTGCTVVVACARWGSTCMACT GAKAGKTGGCTCWG------------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Reverse Complement Original Motif AGTRGASCWMTGTVVVAGCACDGTGMYABCABHBSHCWGYGCCAYCTBKC TGAMCTTTGMMCYT TGAMCWKTGVACCDMTGTVVVAGCACDGTGMYABCABHBSHCWGYGCCAYCTBKC Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----AGTRGASCWMTGTVVVAGCACDGTGMYABCABHBSHCWGYGCCAYCTBKC TGAMCTTTGMMCYT----------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 60 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA REST Reverse Complement Reverse Complement GTTGACCTTTGACCTTT GGYGCTGTCCATGGTGCTGAA GGYGYTGWCCTTKGWSCTKWA Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---GTTGACCTTTGACCTTT- GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Reverse Complement GGYGYTGWCCTTKGWSCTKWA TGRCCTKTGHCCKAB TGRSCKYTGHCCTWBGWSCTKWA Direction: Forward Position #: 3 Overlap #: 13 Alignment: --GGYGYTGWCCTTKGWSCTKWA TGRCCTKTGHCCKAB-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Original Motif Reverse Complement TGRSCKYTGHCCTWBGWSCTKWA TAGTTTYAKCTTT TAGTTTBABCTTTGHCCTWBGWSCTKWA Direction: Forward Position #: 6 Overlap #: 8 Alignment: -----TGRSCKYTGHCCTWBGWSCTKWA TAGTTTYAKCTTT--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Reverse Complement TAGTTTBABCTTTGHCCTWBGWSCTKWA MGGTCAGGGTGACCTRDBHV MGGTYAGTTTGACCTDTGHCCTWBGWSCTKWA Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----TAGTTTBABCTTTGHCCTWBGWSCTKWA MGGTCAGGGTGACCTRDBHV------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 22 Original Motif Original Motif MGGTYAGTTTGACCTDTGHCCTWBGWSCTKWA TTTATGGTGAGCAT TTTAWGGTGAGYWTGACCTDTGHCCTWBGWSCTKWA Direction: Forward Position #: 5 Overlap #: 10 Alignment: ----MGGTYAGTTTGACCTDTGHCCTWBGWSCTKWA TTTATGGTGAGCAT---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif TWYAGSWCBWAGGDCADAGGTCAWKCTCACCWTAAA RAGKGMAGVRRGSRCASAGV TWYAGSWCHDDGVDSVRRGGDCABDSTCACCWTAAA Direction: Forward Position #: 8 Overlap #: 20 Alignment: TWYAGSWCBWAGGDCADAGGTCAWKCTCACCWTAAA -------RAGKGMAGVRRGSRCASAGV--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Original Motif Reverse Complement TWYAGSWCHDDGVDSVRRGGDCABDSTCACCWTAAA TWTTGACAYAGA TWTTGACAYAGRWCHDDGVDSVRRGGDCABDSTCACCWTAAA Direction: Forward Position #: 7 Overlap #: 6 Alignment: ------TWYAGSWCHDDGVDSVRRGGDCABDSTCACCWTAAA TWTTGACAYAGA------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif TTTAWGGTGASDBTGDCCKKBSDVCDDHGWKCTKTGTCAAWA AGTGCTCCACTGTGGTGTCACAGT AGTGCTCCACTKTRDKGTCACABTGDCCKKBSDVCDDHGWKCTKTGTCAAWA Direction: Forward Position #: 11 Overlap #: 14 Alignment: ----------TTTAWGGTGASDBTGDCCKKBSDVCDDHGWKCTKTGTCAAWA AGTGCTCCACTGTGGTGTCACAGT---------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Original Motif AGTGCTCCACTKTRDKGTCACABTGDCCKKBSDVCDDHGWKCTKTGTCAAWA AMTGTGACACCACAGT AVTGYKMCACYWYAGTGTCACABTGDCCKKBSDVCDDHGWKCTKTGTCAAWA Direction: Forward Position #: 1 Overlap #: 16 Alignment: AGTGCTCCACTKTRDKGTCACABTGDCCKKBSDVCDDHGWKCTKTGTCAAWA AMTGTGACACCACAGT------------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 18 Reverse Complement Reverse Complement TWTTGACAYAGRWCHDDGVDSVRRGGDCABTGTGACACTMWMGTGYRMCAVT GCTGGACTTTG GCTGGAYTTTGACAYAGRWCHDDGVDSVRRGGDCABTGTGACACTMWMGTGYRMCAVT Direction: Forward Position #: 7 Overlap #: 5 Alignment: ------TWTTGACAYAGRWCHDDGVDSVRRGGDCABTGTGACACTMWMGTGYRMCAVT GCTGGACTTTG----------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 61 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR4A2 NR1H2RXRA Original Motif Original Motif AAGGTCAC AAAGGTCAAAGGTCAAC AAAGGTCAMAGGTCAAC Direction: Backward Position #: 9 Overlap #: 8 Alignment: -AAGGTCAC-------- AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Reverse Complement GTTGACCTYTGACCTTT MGGTCAGGGTGACCTRDBHV MGGTCAGGKTGACCTBTGACCTTT Direction: Forward Position #: 8 Overlap #: 13 Alignment: -------GTTGACCTYTGACCTTT MGGTCAGGGTGACCTRDBHV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif MGGTCAGGKTGACCTBTGACCTTT VHRGGTCABDBTGMCCTB MGGTCADRKKKMMCTBTGACCTBT Direction: Forward Position #: 6 Overlap #: 18 Alignment: MGGTCAGGKTGACCTBTGACCTTT -----VHRGGTCABDBTGMCCTB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 17 Original Motif Reverse Complement MGGTCADRKKKMMCTBTGACCTBT GAGGTCAGAAG GAGGTCAGAAGKMMCTBTGACCTBT Direction: Forward Position #: 2 Overlap #: 10 Alignment: -MGGTCADRKKKMMCTBTGACCTBT GAGGTCAGAAG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Reverse Complement Original Motif AVAGGTCABAGYRYCTTCTGACCTC AAAGRTMAAACTA AAAGRTMAAASTAYCTTCTGACCTC Direction: Forward Position #: 1 Overlap #: 13 Alignment: AVAGGTCABAGYRYCTTCTGACCTC AAAGRTMAAACTA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Original Motif AAAGRTMAAASTAYCTTCTGACCTC BTRGGDCARAGGKCA VDAGGBCAAAGKDCMTTCTGACCTC Direction: Forward Position #: 1 Overlap #: 15 Alignment: AAAGRTMAAASTAYCTTCTGACCTC BTRGGDCARAGGKCA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 62 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RORA_1 Esrrb Original Motif Original Motif AWVDAGGTCA VBBYCAAGGTCA VBDTCAAGGTCA Direction: Backward Position #: 1 Overlap #: 10 Alignment: --AWVDAGGTCA VBBYCAAGGTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Reverse Complement VBDTCAAGGTCA MGGTCAGGGTGACCTRDBHV VGGTCARGGTSACCTRDBHV Direction: Forward Position #: 1 Overlap #: 12 Alignment: VBDTCAAGGTCA-------- MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Original Motif Original Motif VGGTCARGGTSACCTRDBHV AAAGGTCAAAGGTCAAC AAAGGTCMAAGGTCAMCTRDBHV Direction: Forward Position #: 4 Overlap #: 14 Alignment: ---VGGTCARGGTSACCTRDBHV AAAGGTCAAAGGTCAAC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Original Motif Reverse Complement AAAGGTCMAAGGTCAMCTRDBHV AKGYYCAAAGRTCA AAAGGTYMAARGKYMACTRDBHV Direction: Forward Position #: 3 Overlap #: 14 Alignment: AAAGGTCMAAGGTCAMCTRDBHV --AKGYYCAAAGRTCA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Reverse Complement AAAGGTYMAARGKYMACTRDBHV TGRCCTKTGHCCKAB AAAGGTBMMMDGTBMMCKVBBHV Direction: Forward Position #: 6 Overlap #: 15 Alignment: AAAGGTYMAARGKYMACTRDBHV -----TGRCCTKTGHCCKAB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif VDBBBRGRRBACDRYYBACCTTT TTCAGCACCATGGACAGCKCC TTCAGVACCDDGGACASVRYYBACCTTT Direction: Forward Position #: 6 Overlap #: 16 Alignment: -----VDBBBRGRRBACDRYYBACCTTT TTCAGCACCATGGACAGCKCC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Reverse Complement TTCAGVACCDDGGACASVRYYBACCTTT HVCDBBDBCAGCAG TTCAGVACCDDGGACASVDCHBHHVYWKCAG Direction: Forward Position #: 18 Overlap #: 11 Alignment: TTCAGVACCDDGGACASVRYYBACCTTT--- -----------------HVCDBBDBCAGCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Reverse Complement Reverse Complement CTGYWKVDHBDGHVSTGTCCDDGGTVCTGAA TGMYCTTTGBCCK CTGYWKVDHBGVHCYTKKCCHDGGTVCTGAA Direction: Forward Position #: 10 Overlap #: 13 Alignment: CTGYWKVDHBDGHVSTGTCCDDGGTVCTGAA ---------TGMYCTTTGBCCK--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Reverse Complement TTCAGVACCDDGGYRAMGDVCVHHVYWKCAG VCTSTGKSCMKBCTRCYCTK TTCAGVACCDDGGYRAVSTVHVDVVCDBCWGCYCTK Direction: Forward Position #: 17 Overlap #: 15 Alignment: TTCAGVACCDDGGYRAMGDVCVHHVYWKCAG----- ----------------VCTSTGKSCMKBCTRCYCTK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 63 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF Motif 18 Original Motif Original Motif BAACGTCCGC CAAAGTCCAGC CAAMGTCCRSC Direction: Forward Position #: 1 Overlap #: 10 Alignment: BAACGTCCGC- CAAAGTCCAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Original Motif Original Motif CAAMGTCCRSC VHRGGTCABDBTGMCCTB CAAVGTCMVBCTGMCCTB Direction: Forward Position #: 1 Overlap #: 11 Alignment: CAAMGTCCRSC------- VHRGGTCABDBTGMCCTB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Reverse Complement CAAVGTCMVBCTGMCCTB MGGTCAGGGTGACCTRDBHV MGGTCAGGGTGACCTRBVVVGTCMVBCTGMCCTB Direction: Forward Position #: 17 Overlap #: 4 Alignment: ----------------CAAVGTCMVBCTGMCCTB MGGTCAGGGTGACCTRDBHV-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Reverse Complement Original Motif BAGGYCAGBVRGACVBBBMAGGTCACCCTGACCY AAAGGTCAAAGGTCAAC AAAGGTCAAAGGTCARCVRGACVBBBMAGGTCACCCTGACCY Direction: Forward Position #: 9 Overlap #: 9 Alignment: --------BAGGYCAGBVRGACVBBBMAGGTCACCCTGACCY AAAGGTCAAAGGTCAAC------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- gCGCGCsCgsG Combined Motif Original Motif Reverse Complement AAAGGTCAAAGGTCARCVRGACVBBBMAGGTCACCCTGACCY CGCGSGCGCGC AAAGGTCAAAGGTCARCVRGACVBBCVVGSKCRCSCTGACCY Direction: Forward Position #: 26 Overlap #: 11 Alignment: AAAGGTCAAAGGTCARCVRGACVBBBMAGGTCACCCTGACCY -------------------------CGCGSGCGCGC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Reverse Complement Reverse Complement MGGTCAGSGMGYSCBVGVVVGTCMVGKTGACCTTTGACCTTT BMSMGCCYMCTKSTGGMHM MGGTCAGSGMGYSCBVGMRCSTCCTKBTGRCCHTTGACCTTT Direction: Forward Position #: 15 Overlap #: 19 Alignment: MGGTCAGSGMGYSCBVGVVVGTCMVGKTGACCTTTGACCTTT --------------BMSMGCCYMCTKSTGGMHM--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif AAAGGTCAAHGGMCABYAGGASGMYCVVGSKCRCSCTGACCY TTCAGCACCATGGACAGCKCC TWMAGSWCMAHGGACAGCDSSASGMYCVVGSKCRCSCTGACCY Direction: Forward Position #: 2 Overlap #: 20 Alignment: -AAAGGTCAAHGGMCABYAGGASGMYCVVGSKCRCSCTGACCY TTCAGCACCATGGACAGCKCC---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Original Motif TWMAGSWCMAHGGACAGCDSSASGMYCVVGSKCRCSCTGACCY CTGCTGBDBBDGBD TWMAGSWCMAHGGACAGCDSSASGMYCVDGCTSVBBBTGHCCY Direction: Forward Position #: 28 Overlap #: 14 Alignment: TWMAGSWCMAHGGACAGCDSSASGMYCVVGSKCRCSCTGACCY ---------------------------CTGCTGBDBBDGBD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Reverse Complement TWMAGSWCMAHGGACAGCDSSASGMYCVDGCTSVBBBTGHCCY VCTSTGKSCMKBCTRCYCTK TWMAGSWCMAHGGACAGCDSSASGMYVCTGBKSVCVBTSHVCYCTK Direction: Forward Position #: 27 Overlap #: 17 Alignment: TWMAGSWCMAHGGACAGCDSSASGMYCVDGCTSVBBBTGHCCY--- --------------------------VCTSTGKSCMKBCTRCYCTK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 1 Combined Motif Original Motif Original Motif TWMAGSWCMAHGGACAGCDSSASGMYVCTGBKSVCVBTSHVCYCTK CYTSCCTCTGC TWMAGSWCMAHGGACAGCDSSASGMYVCTGBBYTSCYTSTGCYCTK Direction: Forward Position #: 32 Overlap #: 11 Alignment: TWMAGSWCMAHGGACAGCDSSASGMYVCTGBKSVCVBTSHVCYCTK -------------------------------CYTSCCTCTGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 64 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA NR1H2RXRA Original Motif Original Motif BTRGGDCARAGGKCA AAAGGTCAAAGGTCAAC VDRGGTCAAAGGTCAAC Direction: Backward Position #: 3 Overlap #: 15 Alignment: BTRGGDCARAGGKCA-- AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Original Motif Original Motif VDRGGTCAAAGGTCAAC VHRGGTCABDBTGMCCTB VDRGGTCAVAGKKCMMYB Direction: Forward Position #: 1 Overlap #: 17 Alignment: VDRGGTCAAAGGTCAAC- VHRGGTCABDBTGMCCTB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Reverse Complement Reverse Complement BKYYGYYCTBTGACCKDV VCTSTGKSCMKBCTRCYCTK VCTSTGKSCMKBCTRVBYTDYYCTBTGACCKDV Direction: Forward Position #: 16 Overlap #: 5 Alignment: ---------------BKYYGYYCTBTGACCKDV VCTSTGKSCMKBCTRCYCTK------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif VDRGGTCAVAGKKHAKVVMAGVRRGSRCASAGV VDBHMAGGTCACCCTGACCY VDRGGTCAVAGKKHAKVVMAGDVVVRGSWCASHCTGACCY Direction: Forward Position #: 21 Overlap #: 13 Alignment: VDRGGTCAVAGKKHAKVVMAGVRRGSRCASAGV------- --------------------VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement MGGTCAGDSTGWSCKVVVDCTRVBYTDYYCTBTGACCKDV AGTGSWSCACTGTGAMAMCACAGTG AGTRGRBCASTGTGACMHCACASTGVBYTDYYCTBTGACCKDV Direction: Forward Position #: 4 Overlap #: 22 Alignment: ---MGGTCAGDSTGWSCKVVVDCTRVBYTDYYCTBTGACCKDV AGTGSWSCACTGTGAMAMCACAGTG------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Reverse Complement AGTRGRBCASTGTGACMHCACASTGVBYTDYYCTBTGACCKDV BMSMGCCYMCTKSTGGMHM AGTRGRBCASKVBVRCCHCMYDSTGGHHHDYYCTBTGACCKDV Direction: Forward Position #: 11 Overlap #: 19 Alignment: AGTRGRBCASTGTGACMHCACASTGVBYTDYYCTBTGACCKDV ----------BMSMGCCYMCTKSTGGMHM-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Original Motif AGTRGRBCASKVBVRCCHCMYDSTGGHHHDYYCTBTGACCKDV CHHCHBTCCTSCYTCTGC AGTRGRBCASKVBVRCCHCMYDSTGGHHHBYYYBYTGMCYBTGC Direction: Forward Position #: 27 Overlap #: 17 Alignment: AGTRGRBCASKVBVRCCHCMYDSTGGHHHDYYCTBTGACCKDV- --------------------------CHHCHBTCCTSCYTCTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif GCAVKGRCAKVKKKBHDDCCASDMRGDGGMVVVRSTGVMCMACT TTCAGCACCATGGACAGCKCC TTCAGCASCAHGGACAGVKBBBHDDCCASDMRGDGGMVVVRSTGVMCMACT Direction: Forward Position #: 8 Overlap #: 14 Alignment: -------GCAVKGRCAKVKKKBHDDCCASDMRGDGGMVVVRSTGVMCMACT TTCAGCACCATGGACAGCKCC------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Reverse Complement Reverse Complement AGTRGRBCASKVBVRCCHCMYDSTGGHHHBBBYVCTGTCCHTGSTGCTGAA CCACTGTGVTGTCACAGTGCTCCA AGTRGRBCASKVBVRCCCCAYTGTGGTBTCACAGYKSTCCATGSTGCTGAA Direction: Forward Position #: 18 Overlap #: 24 Alignment: AGTRGRBCASKVBVRCCHCMYDSTGGHHHBBBYVCTGTCCHTGSTGCTGAA -----------------CCACTGTGVTGTCACAGTGCTCCA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Original Motif Reverse Complement AGTRGRBCASKVBVRCCCCAYTGTGGTBTCACAGYKSTCCATGSTGCTGAA GGAGCACTGTGACACCACA AGTRGRBCASKVBVGSMBCACTGTGAYAYCACAGYKSTCCATGSTGCTGAA Direction: Forward Position #: 15 Overlap #: 19 Alignment: AGTRGRBCASKVBVRCCCCAYTGTGGTBTCACAGYKSTCCATGSTGCTGAA --------------GGAGCACTGTGACACCACA------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 65 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 ESR1 Original Motif Reverse Complement CCAGYYHVADCCRG MGGTCAGGGTGACCTRDBHV MGGYCAGBBTGAVCYRGBHV Direction: Forward Position #: 4 Overlap #: 14 Alignment: ---CCAGYYHVADCCRG--- MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Original Motif MGGYCAGBBTGAVCYRGBHV YDRCCASYAGRKGGCRSYV HGGCCASBAKGDGSCRSBVV Direction: Forward Position #: 1 Overlap #: 19 Alignment: MGGYCAGBBTGAVCYRGBHV YDRCCASYAGRKGGCRSYV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif HGGCCASBAKGDGSCRSBVV RAGKGMAGVRRGSRCASAGV HGGCCASBAVRRGSCRGHVVGSRCASAGV Direction: Forward Position #: 10 Overlap #: 11 Alignment: HGGCCASBAKGDGSCRSBVV--------- ---------RAGKGMAGVRRGSRCASAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Original Motif VCTSTGKSCVBDCKGSCMKVTBSTGGCCD CHHCHBTCCTSCYTCTGC VCTSTGKSCVBDCKGCHHBHBDSYKGCCDCTGC Direction: Forward Position #: 16 Overlap #: 14 Alignment: VCTSTGKSCVBDCKGSCMKVTBSTGGCCD---- ---------------CHHCHBTCCTSCYTCTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Original Motif VCTSTGKSCVBDCKGCHHBHBDSYKGCCDCTGC CTGCTGBDBBDGBD VCTSTGKSCVBDCKGCHHBHBTGCTGCHBCTGHD Direction: Forward Position #: 21 Overlap #: 13 Alignment: VCTSTGKSCVBDCKGCHHBHBDSYKGCCDCTGC- --------------------CTGCTGBDBBDGBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement VCTSTGKSCVBDCKGCHHBHBTGCTGCHBCTGHD BAGGYCABHBTGACCKHV VCTSTGKSCVBDCKGCHHBHBWGBTSMHBBTGHCCKHV Direction: Forward Position #: 21 Overlap #: 14 Alignment: VCTSTGKSCVBDCKGCHHBHBTGCTGCHBCTGHD---- --------------------BAGGYCABHBTGACCKHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Reverse Complement VCTSTGKSCVBDCKGCHHBHBWGBTSMHBBTGHCCKHV TGRCCTKTGHCCKAB VCTSTGKSCVBDCKGCHHBHBWGBTSACCTTKVBCBDVB Direction: Forward Position #: 25 Overlap #: 14 Alignment: VCTSTGKSCVBDCKGCHHBHBWGBTSMHBBTGHCCKHV- ------------------------TGRCCTKTGHCCKAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Reverse Complement BBDBGBVRAAGGTSABCWBDBDDGCRGHVVGSRCASAGV CTSTGTBKMCTGH BBDBGBVRAAGGTSABCWBDBDDGCWSTRBBBVCWGAGV Direction: Forward Position #: 25 Overlap #: 13 Alignment: BBDBGBVRAAGGTSABCWBDBDDGCRGHVVGSRCASAGV ------------------------CTSTGTBKMCTGH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Reverse Complement Reverse Complement VCTCWGVBBVMASWGCHHBHBWGBTSACCTTKVBCBDVB GAKAGKTGGCTCWG GAKAGKTGGCTCWGVBBVMASWGCHHBHBWGBTSACCTTKVBCBDVB Direction: Forward Position #: 9 Overlap #: 6 Alignment: --------VCTCWGVBBVMASWGCHHBHBWGBTSACCTTKVBCBDVB GAKAGKTGGCTCWG--------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Reverse Complement Original Motif BBDBGBVRAAGGTSABCWBDBDDGCWSTRBBBVCWGAGCCAYCTYTC CAGTGCTCCACTGTGBT CAGTGCTCCACTGTGBHRAAGGTSABCWBDBDDGCWSTRBBBVCWGAGCCAYCTYTC Direction: Forward Position #: 11 Overlap #: 7 Alignment: ----------BBDBGBVRAAGGTSABCWBDBDDGCWSTRBBBVCWGAGCCAYCTYTC CAGTGCTCCACTGTGBT---------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 66 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF TFM12 Reverse Complement Reverse Complement BMSMGCCYMCTKSTGGMHM VCTSTGKSCMKBCTRCYCTK BCBMKSCCCCTBSTGSHCHK Direction: Forward Position #: 1 Overlap #: 19 Alignment: BMSMGCCYMCTKSTGGMHM- VCTSTGKSCMKBCTRCYCTK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Reverse Complement RHGDSCASVAGGGGSYRVGV MGGTCAGGGTGACCTRDBHV RHGDSCASVAGGBSVBGVKGACCTRDBHV Direction: Forward Position #: 10 Overlap #: 11 Alignment: RHGDSCASVAGGGGSYRVGV--------- ---------MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif RHGDSCASVAGGBSVBGVKGACCTRDBHV AGTGCTCCACTGTGGTGTCACAGT AGTGCTCCACTGTGGTGTCACAGKSCASVAGGBSVBGVKGACCTRDBHV Direction: Forward Position #: 21 Overlap #: 4 Alignment: --------------------RHGDSCASVAGGBSVBGVKGACCTRDBHV AGTGCTCCACTGTGGTGTCACAGT------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Reverse Complement Original Motif VDBHMAGGTCRVCBBSVCCTBSTGSRCTGTGACACCACAGTGGAGCACT CACTGTGRTRTCACAGTGSWSCACT VDBCAMKGTSRHVBCRCMSTGSTGCACTGTGACACCACAGTGGAGCACT Direction: Forward Position #: 4 Overlap #: 25 Alignment: VDBHMAGGTCRVCBBSVCCTBSTGSRCTGTGACACCACAGTGGAGCACT ---CACTGTGRTRTCACAGTGSWSCACT--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Reverse Complement AGTGCTCCACTGTGGTGTCACAGTGCASCASYGKGVVHKSACRRTGBHV GCAGAKGSAGGABDGHDG AGTGCTCCACTGTGGTGTCACAGTGCASCASYGBDVMDGSASRVBGVHVG Direction: Forward Position #: 33 Overlap #: 17 Alignment: AGTGCTCCACTGTGGTGTCACAGTGCASCASYGKGVVHKSACRRTGBHV- --------------------------------GCAGAKGSAGGABDGHDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Original Motif AGTGCTCCACTGTGGTGTCACAGTGCASCASYGBDVMDGSASRVBGVHVG CAGTGCTCCACTGTGBT CAGTGCTCCACTGTGGTGTCACAGTGCASCASYGBDVMDGSASRVBGVHVG Direction: Forward Position #: 2 Overlap #: 16 Alignment: -AGTGCTCCACTGTGGTGTCACAGTGCASCASYGBDVMDGSASRVBGVHVG CAGTGCTCCACTGTGBT---------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAcCACAGTGGAGCAct Combined Motif Reverse Complement Reverse Complement CVHVCVBMSTSCHYVDBCMSTGSTGCACTGTGACACCACAGTGGAGCACTG AGTGCTCCACTGTGDTG CVHVCVBMSTSCHYVDBCAGTGCTSCACTGTGAYRCCACAGTGGAGCACTG Direction: Forward Position #: 19 Overlap #: 17 Alignment: CVHVCVBMSTSCHYVDBCMSTGSTGCACTGTGACACCACAGTGGAGCACTG ------------------AGTGCTCCACTGTGDTG---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Original Motif Reverse Complement CVHVCVBMSTSCHYVDBCAGTGCTSCACTGTGAYRCCACAGTGGAGCACTG CCACTGTGVTGTCACAGTGCTCCA CVHVCVBMSTSCCACTGYRGTGYYMCASTGYKMCACCACAGTGGAGCACTG Direction: Forward Position #: 12 Overlap #: 24 Alignment: CVHVCVBMSTSCHYVDBCAGTGCTSCACTGTGAYRCCACAGTGGAGCACTG -----------CCACTGTGVTGTCACAGTGCTCCA---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Reverse Complement Reverse Complement CAGTGCTCCACTGTGGTGRYMCASTGYKMCACMMCAGTGGSASRVBGVHVG GAKAGKTGGCTCWG GAKAGKTGGCWSWGCTCCACTGTGGTGRYMCASTGYKMCACMMCAGTGGSASRVBGVHVG Direction: Forward Position #: 10 Overlap #: 5 Alignment: ---------CAGTGCTCCACTGTGGTGRYMCASTGYKMCACMMCAGTGGSASRVBGVHVG GAKAGKTGGCTCWG---------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 47 Reverse Complement Original Motif CVHVCVBMSTSCCACTGYRGTGYYMCASTGYKMCACCACAGTGGAGCWSWGCCAYCTYTC YGCCACCTDSTGGY YGCCMCCTVSTGSYACTGYRGTGYYMCASTGYKMCACCACAGTGGAGCWSWGCCAYCTYTC Direction: Forward Position #: 2 Overlap #: 13 Alignment: -CVHVCVBMSTSCCACTGYRGTGYYMCASTGYKMCACCACAGTGGAGCWSWGCCAYCTYTC YGCCACCTDSTGGY----------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 67 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement TGTGGTGTCACAGTGCTCC CCACTGTGVTGTCACAGTGCTCCA CCACTGTGGTGTCACAGTGCTCCA Direction: Forward Position #: 5 Overlap #: 19 Alignment: ----TGTGGTGTCACAGTGCTCC- CCACTGTGVTGTCACAGTGCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Original Motif Original Motif CCACTGTGGTGTCACAGTGCTCCA CACTGTGRTRTCACAGTGSWSCACT CCACTGTGVTGTCACAGTGCTCCACT Direction: Forward Position #: 2 Overlap #: 23 Alignment: CCACTGTGGTGTCACAGTGCTCCA-- -CACTGTGRTRTCACAGTGSWSCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif AGTGGAGCACTGTGACAVCACAGTGG AGTGCTCCACTGTGGTGTCACAGT AGTGSWSCACTGTGRYRTCACAGTGG Direction: Forward Position #: 1 Overlap #: 24 Alignment: AGTGGAGCACTGTGACAVCACAGTGG AGTGCTCCACTGTGGTGTCACAGT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement AGTGSWSCACTGTGRYRTCACAGTGG MGGTCAGGGTGACCTRDBHV AGTVSKBCASKGTGACVTVACAVTGG Direction: Forward Position #: 4 Overlap #: 20 Alignment: AGTGSWSCACTGTGRYRTCACAGTGG ---MGGTCAGGGTGACCTRDBHV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif AGTVSKBCASKGTGACVTVACAVTGG RAGKGMAGVRRGSRCASAGV AGTVSKBCASKGTGRMVKVVHRVDGGSRCASAGV Direction: Forward Position #: 15 Overlap #: 12 Alignment: AGTVSKBCASKGTGACVTVACAVTGG-------- --------------RAGKGMAGVRRGSRCASAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement AGTVSKBCASKGTGRMVKVVHRVDGGSRCASAGV BAGGYCABHBTGACCKHV AGTVSKBCASKGTGRMVKVVHVVKGBSACHSWGACCKHV Direction: Forward Position #: 22 Overlap #: 13 Alignment: AGTVSKBCASKGTGRMVKVVHRVDGGSRCASAGV----- ---------------------BAGGYCABHBTGACCKHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Original Motif AGTVSKBCASKGTGRMVKVVHVVKGBSACHSWGACCKHV CAGTGCTCCACTGTGBT CAGTGCTCCACTGTGVHVKVVHVVKGBSACHSWGACCKHV Direction: Forward Position #: 2 Overlap #: 16 Alignment: -AGTVSKBCASKGTGRMVKVVHVVKGBSACHSWGACCKHV CAGTGCTCCACTGTGBT----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Original Motif CAGTGCTCCACTGTGVHVKVVHVVKGBSACHSWGACCKHV AMTGTGACACCACAGT AMYRKKRCWCCACWGTGVHVKVVHVVKGBSACHSWGACCKHV Direction: Forward Position #: 3 Overlap #: 14 Alignment: --CAGTGCTCCACTGTGVHVKVVHVVKGBSACHSWGACCKHV AMTGTGACACCACAGT-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Reverse Complement AMYRKKRCWCCACWGTGVHVKVVHVVKGBSACHSWGACCKHV TGTGTGDKTGTGTGTGTRTG AMYRKKRCWCCACWGTGVHVKVVHVVTGTVWSDBWGWSYKTGTRTG Direction: Forward Position #: 27 Overlap #: 16 Alignment: AMYRKKRCWCCACWGTGVHVKVVHVVKGBSACHSWGACCKHV---- --------------------------TGTGTGDKTGTGTGTGTRTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Reverse Complement AMYRKKRCWCCACWGTGVHVKVVHVVTGTVWSDBWGWSYKTGTRTG TGTGTGWGTGTGTGTGTG AMYRKKRCWCCACWGTGVHVKVVHVVTGTVWSTGTGTSTKTGTGTGTGTG Direction: Forward Position #: 33 Overlap #: 14 Alignment: AMYRKKRCWCCACWGTGVHVKVVHVVTGTVWSDBWGWSYKTGTRTG---- --------------------------------TGTGTGWGTGTGTGTGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 68 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sscCCCGCGcs ssCCCCGCSssk Original Motif Original Motif BSCCCCGCGBS SBCCCCGCCSBB SSCCCCGCSSSB Direction: Forward Position #: 1 Overlap #: 11 Alignment: BSCCCCGCGBS- SBCCCCGCCSBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- gCGCGCsCgsG Combined Motif Reverse Complement Original Motif BSSSGCGGGGSS GCGCGCSCGCG BCGCGCGSGSGS Direction: Forward Position #: 1 Overlap #: 11 Alignment: BSSSGCGGGGSS GCGCGCSCGCG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGCkTGCssk Combined Motif Reverse Complement Original Motif SCSCSCGCGCGB SSGCKTGCSSK SSGCGYGCSSKB Direction: Forward Position #: 1 Overlap #: 11 Alignment: SCSCSCGCGCGB SSGCKTGCSSK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CTCF Original Motif Original Motif SSGCGYGCSSKB YDRCCASYAGRKGGCRSYV YDRCCASYAGRKGGCVSCVYGCSSKB Direction: Forward Position #: 15 Overlap #: 5 Alignment: --------------SSGCGYGCSSKB YDRCCASYAGRKGGCRSYV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Reverse Complement YDRCCASYAGRKGGCVSCVYGCSSKB GCAGAKGSAGGABDGHDG YDRBCASHRGSDGGVBVBHBGCSSKB Direction: Forward Position #: 4 Overlap #: 18 Alignment: YDRCCASYAGRKGGCVSCVYGCSSKB ---GCAGAKGSAGGABDGHDG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Reverse Complement BYSSGCVHBVBVCCDSCKHSTGBMHM VCTSTGKSCMKBCTRCYCTK BYSSGCVHBVBVBCTSYGBSHVBHCHRCYCTK Direction: Forward Position #: 13 Overlap #: 14 Alignment: BYSSGCVHBVBVCCDSCKHSTGBMHM------ ------------VCTSTGKSCMKBCTRCYCTK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif RAGKGMHGDBVHSVCKSAGBVBVBHBGCSSKB VDBHMAGGTCACCCTGACCY RAGKGMHGDBVHSVCKSAGBVBVVGGKCRCBBTGACCY Direction: Forward Position #: 19 Overlap #: 14 Alignment: RAGKGMHGDBVHSVCKSAGBVBVBHBGCSSKB------ ------------------VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cCGCGGrCACG Reverse Complement Reverse Complement MGGTCABBGKGYCCBVBVBCTSYGBSHVBHCHRCYCTK CGTGKCCGCGG CVKGTCMGCGKGYCCBVBVBCTSYGBSHVBHCHRCYCTK Direction: Forward Position #: 2 Overlap #: 10 Alignment: -MGGTCABBGKGYCCBVBVBCTSYGBSHVBHCHRCYCTK CGTGKCCGCGG---------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Reverse Complement CVKGTCMGCGKGYCCBVBVBCTSYGBSHVBHCHRCYCTK GGYGCTGTCCATGGTGCTGAA CVKGTCMGCGGGYBCTGTCCMTGGTBCTGVHCHRCYCTK Direction: Forward Position #: 11 Overlap #: 21 Alignment: CVKGTCMGCGKGYCCBVBVBCTSYGBSHVBHCHRCYCTK ----------GGYGCTGTCCATGGTGCTGAA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 1 Combined Motif Reverse Complement Reverse Complement RAGKGMHGHBCAGBACCARGGACAGBKCCCGCRGACYVG GCAGAGGSAKG RAGKGMHGHBCAGBACCARGGACAGBKSCMGMGGVMBVG Direction: Forward Position #: 28 Overlap #: 11 Alignment: RAGKGMHGHBCAGBACCARGGACAGBKCCCGCRGACYVG ---------------------------GCAGAGGSAKG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 69 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- atactttggc wwCCAmAGTCmt Reverse Complement Original Motif GCCAAAGTAT DDCCAMAGTCHB DGCCAAAGTMTB Direction: Backward Position #: 2 Overlap #: 10 Alignment: -GCCAAAGTAT- DDCCAMAGTCHB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif taaacgatgcc Original Motif Original Motif DGCCAAAGTMTB TAAACGATGCC TAAACGATGCCAAAGTMTB Direction: Forward Position #: 8 Overlap #: 4 Alignment: -------DGCCAAAGTMTB TAAACGATGCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Original Motif Reverse Complement TAAACGATGCCAAAGTMTB GTTGACCTTTGACCTTT GTTGACCTTTRAMCKWTGCCAAAGTMTB Direction: Forward Position #: 10 Overlap #: 8 Alignment: ---------TAAACGATGCCAAAGTMTB GTTGACCTTTGACCTTT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Reverse Complement Reverse Complement VAYACTTTGGCAWYGYTKAAAGGTCAAC GGAGCACTGTGACACCACA GGARCACTKTGRCAHCRYWKAAAGGTCAAC Direction: Forward Position #: 3 Overlap #: 17 Alignment: --VAYACTTTGGCAWYGYTKAAAGGTCAAC GGAGCACTGTGACACCACA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement GGARCACTKTGRCAHCRYWKAAAGGTCAAC AGTGSWSCACTGTGAMAMCACAGTG AGTGGAGCACTGTGACAHCACAGWRAGGTCAAC Direction: Forward Position #: 4 Overlap #: 22 Alignment: ---GGARCACTKTGRCAHCRYWKAAAGGTCAAC AGTGSWSCACTGTGAMAMCACAGTG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Reverse Complement Reverse Complement GTTGACCTKWCTGTGDTGTCACAGTGCTCCACT TGMYCTTTGBCCK TGMYCKTTGACCTKWCTGTGDTGTCACAGTGCTCCACT Direction: Forward Position #: 6 Overlap #: 8 Alignment: -----GTTGACCTKWCTGTGDTGTCACAGTGCTCCACT TGMYCTTTGBCCK------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Original Motif Original Motif TGMYCKTTGACCTKWCTGTGDTGTCACAGTGCTCCACT TGAMCTTTGMMCYT TGAMCTTTGVCCYKWCTGTGDTGTCACAGTGCTCCACT Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGMYCKTTGACCTKWCTGTGDTGTCACAGTGCTCCACT TGAMCTTTGMMCYT------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Original Motif Original Motif TGAMCTTTGVCCYKWCTGTGDTGTCACAGTGCTCCACT TGGAGCACTGTGACAVCACAGTGG TGAMCTTTKRSMBYACTGTGAYRBCACAGTGSTCCACT Direction: Forward Position #: 9 Overlap #: 24 Alignment: TGAMCTTTGVCCYKWCTGTGDTGTCACAGTGCTCCACT --------TGGAGCACTGTGACAVCACAGTGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif AGTGGASCACTGTGVKKTCACAGTKBYSMYAAAGRTCA AGTGCTCCACTGTGGTGTCACAGT AGTGSTCCACTGTGVTGTCACAGTKBYSMYAAAGRTCA Direction: Forward Position #: 1 Overlap #: 24 Alignment: AGTGGASCACTGTGVKKTCACAGTKBYSMYAAAGRTCA AGTGCTCCACTGTGGTGTCACAGT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 70 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CagTGCTCCACTGTGgT CTCF Original Motif Reverse Complement CAGTGCTCCACTGTGBT BMSMGCCYMCTKSTGGMHM BMSMGYSCYCYACTGKGBH Direction: Backward Position #: 1 Overlap #: 17 Alignment: --CAGTGCTCCACTGTGBT BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif HBCRCAGTKGMGSMCYSYV TTCAGCACCATGGACAGCKCC TTCAGCACMVTGGASAVCBSYV Direction: Forward Position #: 4 Overlap #: 18 Alignment: ---HBCRCAGTKGMGSMCYSYV TTCAGCACCATGGACAGCKCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Reverse Complement Original Motif BKSVGVTSTCCAVRGTGCTGAA TGTGGTGTCACAGTGCTCC TGTGGTGTCRCAGHKCTCCAVRGTGCTGAA Direction: Forward Position #: 9 Overlap #: 11 Alignment: --------BKSVGVTSTCCAVRGTGCTGAA TGTGGTGTCACAGTGCTCC----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement TGTGGTGTCRCAGHKCTCCAVRGTGCTGAA ACTGTGACACCACAGTGGAGCACT ACTGTGRYRYCACAGTGSWSCACDGTGCTGAA Direction: Forward Position #: 3 Overlap #: 22 Alignment: --TGTGGTGTCRCAGHKCTCCAVRGTGCTGAA ACTGTGACACCACAGTGGAGCACT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Original Motif Reverse Complement ACTGTGRYRYCACAGTGSWSCACDGTGCTGAA AGTGSWSCACTGTGAMAMCACAGTG ACWGTGVWGCMMYRKKRVAVCACAGTGCTGAA Direction: Forward Position #: 3 Overlap #: 25 Alignment: ACTGTGRYRYCACAGTGSWSCACDGTGCTGAA --AGTGSWSCACTGTGAMAMCACAGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Reverse Complement Original Motif TTCAGCACTGTGVTVMYRMMRYGCWVCACWGT TGGAGCACTGTGACAVCACAGTGG TKSAGCACTGTGAYAVCACAGTGVWVCACWGT Direction: Forward Position #: 1 Overlap #: 24 Alignment: TTCAGCACTGTGVTVMYRMMRYGCWVCACWGT TGGAGCACTGTGACAVCACAGTGG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Original Motif Reverse Complement TKSAGCACTGTGAYAVCACAGTGVWVCACWGT AGTGCTCCACTGTGDTG AGTGCWSCACTGTGVTRVCACAGTGVWVCACWGT Direction: Forward Position #: 3 Overlap #: 15 Alignment: --TKSAGCACTGTGAYAVCACAGTGVWVCACWGT AGTGCTCCACTGTGDTG----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Reverse Complement Reverse Complement ACWGTGVWVCACTGTGVMABCACAGTGSWGCACT ACTGTGGTGTCACART ACTGTGGTGYMAYRKKVMABCACAGTGSWGCACT Direction: Forward Position #: 1 Overlap #: 16 Alignment: ACWGTGVWVCACTGTGVMABCACAGTGSWGCACT ACTGTGGTGTCACART------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 47 Original Motif Reverse Complement ACTGTGGTGYMAYRKKVMABCACAGTGSWGCACT KCCASDAGGTGGCK KCCASAMKGTGGYKYMAYRKKVMABCACAGTGSWGCACT Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----ACTGTGGTGYMAYRKKVMABCACAGTGSWGCACT KCCASDAGGTGGCK------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Reverse Complement KCCASAMKGTGGYKYMAYRKKVMABCACAGTGSWGCACT VCTSTGKSCMKBCTRCYCTK KCCASAMKGTGGYKYMAYRKKVMABCACWGTGBHSCDBYTRCYCTK Direction: Forward Position #: 27 Overlap #: 13 Alignment: KCCASAMKGTGGYKYMAYRKKVMABCACAGTGSWGCACT------- --------------------------VCTSTGKSCMKBCTRCYCTK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 71 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AmTGTGACACCACAGT AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement AMTGTGACACCACAGT ACTGTGACACCACAGTGGAGCACT ACTGTGACACCACAGTGGAGCACT Direction: Forward Position #: 1 Overlap #: 16 Alignment: AMTGTGACACCACAGT-------- ACTGTGACACCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement ACTGTGACACCACAGTGGAGCACT CCACTGTGVTGTCACAGTGCTCCA CCACTGTGAYRYCACAGTGSWSCACT Direction: Forward Position #: 3 Overlap #: 22 Alignment: --ACTGTGACACCACAGTGGAGCACT CCACTGTGVTGTCACAGTGCTCCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Original Motif Original Motif CCACTGTGAYRYCACAGTGSWSCACT CACTGTGRTRTCACAGTGSWSCACT CCACTGTGRYRTCACAGTGSWSCACT Direction: Forward Position #: 2 Overlap #: 25 Alignment: CCACTGTGAYRYCACAGTGSWSCACT -CACTGTGRTRTCACAGTGSWSCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Reverse Complement Original Motif AGTGSWSCACTGTGAMMKCACAGTGG TGTGGTGTCACAGTGCTCC TRKKGYDKCACWGTGMHMBCACAGTGG Direction: Forward Position #: 2 Overlap #: 18 Alignment: -AGTGSWSCACTGTGAMMKCACAGTGG TGTGGTGTCACAGTGCTCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CagTGCTCCACTGTGgT Combined Motif Reverse Complement Original Motif CCACTGTGBRHRCACWGTGRHMCRRKA CAGTGCTCCACTGTGBT CCACYRKKGSTVCACWGTGVTMCRRKA Direction: Forward Position #: 5 Overlap #: 17 Alignment: CCACTGTGBRHRCACWGTGRHMCRRKA ----CAGTGCTCCACTGTGBT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif TRKKGYAVCACWGTGVASCRRMMGTGG RAGKGMAGVRRGSRCASAGV TRKKGYAVCACWGTGVAGBRVHVVDGGSRCASAGV Direction: Forward Position #: 16 Overlap #: 12 Alignment: TRKKGYAVCACWGTGVASCRRMMGTGG-------- ---------------RAGKGMAGVRRGSRCASAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAcCACAGTGGAGCAct Combined Motif Reverse Complement Reverse Complement VCTSTGKSCCDVVHBMBCTVCACWGTGVTMCRRKA AGTGCTCCACTGTGDTG VCTSTGKSCCDVVHBYGCTCCACTGTGVTRCRRKA Direction: Forward Position #: 14 Overlap #: 17 Alignment: VCTSTGKSCCDVVHBMBCTVCACWGTGVTMCRRKA -------------AGTGCTCCACTGTGDTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Reverse Complement TRKKGMAVCACAGTGGAGCMBHVVDGGSRCASAGV MGGTCAGGGTGACCTRDBHV TRKKGMAVCACAGTGGAGCMBHGGTSRGRSWGASCTRDBHV Direction: Forward Position #: 22 Overlap #: 14 Alignment: TRKKGMAVCACAGTGGAGCMBHVVDGGSRCASAGV------ ---------------------MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Reverse Complement Reverse Complement VDBHMAGSTCWSMCKSACCHBYGCTCCACTGTGVTRCRRKA GGYGCTGTCCATGGTGCTGAA VDBHMAGSTCWSMCKSASVHGCTSTCCAYKGTGCTGMRRKA Direction: Forward Position #: 18 Overlap #: 21 Alignment: VDBHMAGSTCWSMCKSACCHBYGCTCCACTGTGVTRCRRKA -----------------GGYGCTGTCCATGGTGCTGAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Original Motif VDBHMAGSTCWSMCKSASVHGCTSTCCAYKGTGCTGMRRKA CTGCTGBDBBDGBD VDBHMAGSTCWSMCKSASVHGCTSTCCMHGSTGVTGHDRBD Direction: Forward Position #: 28 Overlap #: 14 Alignment: VDBHMAGSTCWSMCKSASVHGCTSTCCAYKGTGCTGMRRKA ---------------------------CTGCTGBDBBDGBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 72 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement CACTGTGRTRTCACAGTGSWSCACT ACTGTGACACCACAGTGGAGCACT CACTGTGAYAYCACAGTGSAGCACT Direction: Backward Position #: 1 Overlap #: 24 Alignment: CACTGTGRTRTCACAGTGSWSCACT -ACTGTGACACCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Reverse Complement Original Motif AGTGCTSCACTGTGMTKTCACAGTG TGGAGCACTGTGACAVCACAGTGG AGTGSWSCACTGTGAYRBCACAGTGG Direction: Forward Position #: 3 Overlap #: 23 Alignment: AGTGCTSCACTGTGMTKTCACAGTG- --TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Reverse Complement CCACTGTGVKKTCACAGTGSWSCACT VCTSTGKSCMKBCTRCYCTK VCWCTGTGMHKTCWSMBYKBWSCACT Direction: Forward Position #: 1 Overlap #: 20 Alignment: CCACTGTGVKKTCACAGTGSWSCACT VCTSTGKSCMKBCTRCYCTK------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif VCWCTGTGMHKTCWSMBYKBWSCACT VDBHMAGGTCACCCTGACCY VCWCTGTGMHKTCDVVBHDGKBCACYCTGACCY Direction: Forward Position #: 14 Overlap #: 13 Alignment: VCWCTGTGMHKTCWSMBYKBWSCACT------- -------------VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Reverse Complement Original Motif MGGTCAGMGTGVYCDDBVVDGARHRCACAGWGV YDRCCASYAGRKGGCRSYV MGGTCAGMGTGVYCDDBVVDGHVDCCACHRGGGGGCRSYV Direction: Forward Position #: 22 Overlap #: 12 Alignment: MGGTCAGMGTGVYCDDBVVDGARHRCACAGWGV------- ---------------------YDRCCASYAGRKGGCRSYV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Reverse Complement Original Motif BMSMGCCCCCKHGTGGHVHCDVVBHDGKBCACYCTGACCY TGTGGTGTCACAGTGCTCC BMSMGCCCCCKTGTGGTGTCACAGTGSTCCACYCTGACCY Direction: Forward Position #: 12 Overlap #: 19 Alignment: BMSMGCCCCCKHGTGGHVHCDVVBHDGKBCACYCTGACCY -----------TGTGGTGTCACAGTGCTCC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAcCACAGTGGAGCAct Combined Motif Original Motif Original Motif BMSMGCCCCCKTGTGGTGTCACAGTGSTCCACYCTGACCY CAHCACAGTGGAGCACT BMSMGCCCCCKTGTGGYRHCACAGTGGWGCACTCTGACCY Direction: Forward Position #: 17 Overlap #: 17 Alignment: BMSMGCCCCCKTGTGGTGTCACAGTGSTCCACYCTGACCY ----------------CAHCACAGTGGAGCACT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CagTGCTCCACTGTGgT Combined Motif Original Motif Original Motif BMSMGCCCCCKTGTGGYRHCACAGTGGWGCACTCTGACCY CAGTGCTCCACTGTGBT BMSMGCCCCCKYVKKGCWCCACWGTGGWGCACTCTGACCY Direction: Forward Position #: 12 Overlap #: 17 Alignment: BMSMGCCCCCKTGTGGYRHCACAGTGGWGCACTCTGACCY -----------CAGTGCTCCACTGTGBT------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Reverse Complement MGGTCAGAGTGCWCCACWGTGGWGCRRBKRGGGGGCRSYV GCAGAKGSAGGABDGHDG MGGTCAGAGTGCWCCACWGTGGWGCRVDGAKGSRGSRBDVHDG Direction: Forward Position #: 26 Overlap #: 15 Alignment: MGGTCAGAGTGCWCCACWGTGGWGCRRBKRGGGGGCRSYV--- -------------------------GCAGAKGSAGGABDGHDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif MGGTCAGAGTGCWCCACWGTGGWGCRVDGAKGSRGSRBDVHDG VHRGGTCABDBTGMCCTB MGGTCAGAGTGCWCCACWGTGGWGCRVDGVDRGGKCABDVTGVCCTB Direction: Forward Position #: 30 Overlap #: 14 Alignment: MGGTCAGAGTGCWCCACWGTGGWGCRVDGAKGSRGSRBDVHDG---- -----------------------------VHRGGTCABDBTGMCCTB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 73 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Original Motif CCACTGTGVTGTCACAGTGCTCCA CACTGTGRTRTCACAGTGSWSCACT CCMMYKKKGTKKYMMMRKKSYHCMACT Direction: Forward Position #: 3 Overlap #: 23 Alignment: CCACTGTGVTGTCACAGTGCTCCA----------------------------- --CACTGTGRTRTCACAGTGSWSCACT-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif CCMMYKKKGTKKYMMMRKKSYHCMACT AGTGCTCCACTGTGGTGTCACAGT AGTGCYCCACTGTGKTGTCACAKTSYHCMACT Direction: Forward Position #: 6 Overlap #: 19 Alignment: -----CCMMYKKKGTKKYMMMRKKSYHCMACT AGTGCTCCACTGTGGTGTCACAGT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement AGTGCYCCACTGTGKTGTCACAKTSYHCMACT BAGGYCABHBTGACCKHV AGTGCYCCABKBYRBBBTSACMKTSYHCMACT Direction: Forward Position #: 8 Overlap #: 18 Alignment: AGTGCYCCACTGTGKTGTCACAKTSYHCMACT -------BAGGYCABHBTGACCKHV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Original Motif AGTGCYCCABKBYRBBBTSACMKTSYHCMACT CHHCHBTCCTSCYTCTGC AGTGCYCCABKBYRBBBYVACMBTSYTSCMYYTGC Direction: Forward Position #: 18 Overlap #: 15 Alignment: AGTGCYCCABKBYRBBBTSACMKTSYHCMACT--- -----------------CHHCHBTCCTSCYTCTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif GCAMKYGSAKSAVRGTVMBVVMMVYBTGGMGCACT VDBHMAGGTCACCCTGACCY GCAMKYGSAKSAVRGTVMBVVVVVYVKGKCRCMCTGACCY Direction: Forward Position #: 21 Overlap #: 15 Alignment: GCAMKYGSAKSAVRGTVMBVVMMVYBTGGMGCACT----- --------------------VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Reverse Complement MGGTCAGYGMGYCYBKVVBVBBYVACMBTSYTSCMYYTGC VCTSTGKSCMKBCTRCYCTK MGGTCAGYGMGYCYBKVVBVBBYVHCHBTSBHCMHHCTGCYCTK Direction: Forward Position #: 25 Overlap #: 16 Alignment: MGGTCAGYGMGYCYBKVVBVBBYVACMBTSYTSCMYYTGC---- ------------------------VCTSTGKSCMKBCTRCYCTK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Original Motif Original Motif MGGTCAGYGMGYCYBKVVBVBBYVHCHBTSBHCMHHCTGCYCTK TGTGGTGTCACAGTGCTCC MGGTCAGYGMGYCYBKVBGVTGTCACWGTGCTCCHHCTGCYCTK Direction: Forward Position #: 16 Overlap #: 19 Alignment: MGGTCAGYGMGYCYBKVVBVBBYVHCHBTSBHCMHHCTGCYCTK ---------------TGTGGTGTCACAGTGCTCC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CagTGCTCCACTGTGgT Combined Motif Reverse Complement Reverse Complement RAGKGCAGHHGGAGCACWGTGACAVCVVRVKGKCRCMCTGACCY ABCACAGTGGAGCACTG RAGKGCAGHHGGABCACWGTGRMRCHVHRVKGKCRCMCTGACCY Direction: Forward Position #: 13 Overlap #: 17 Alignment: RAGKGCAGHHGGAGCACWGTGACAVCVVRVKGKCRCMCTGACCY ------------ABCACAGTGGAGCACTG--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Original Motif Original Motif RAGKGCAGHHGGABCACWGTGRMRCHVHRVKGKCRCMCTGACCY CAHCACAGTGGAGCACT CAHCACAGTGSAGCAVKABCACWGTGRMRCHVHRVKGKCRCMCTGACCY Direction: Forward Position #: 6 Overlap #: 12 Alignment: -----RAGKGCAGHHGGABCACWGTGRMRCHVHRVKGKCRCMCTGACCY CAHCACAGTGGAGCACT-------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Reverse Complement Reverse Complement MGGTCAGYGMGYCYBMHVHGMYMCACWGTGBTRVTGCTSCACTGTGDTG BMSMGCCYMCTKSTGGMHM MGGTCAGYGMGYCYBMHVHGMYMCACWGTGBTVSHGCYCCMYTGTGGYBM Direction: Forward Position #: 32 Overlap #: 18 Alignment: MGGTCAGYGMGYCYBMHVHGMYMCACWGTGBTRVTGCTSCACTGTGDTG- -------------------------------BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 74 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCCCCGCSssk TFM2 Original Motif Original Motif SBCCCCGCCSBB CHHCHBTCCTSCYTCTGC CHHCBBYCCYGCCBCTGC Direction: Backward Position #: 3 Overlap #: 12 Alignment: ----SBCCCCGCCSBB-- CHHCHBTCCTSCYTCTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Reverse Complement CHHCBBYCCYGCCBCTGC MGGTCAGGGTGACCTRDBHV MGGTCAGGGTGACCTVBHVVBYCCYGCCBCTGC Direction: Forward Position #: 16 Overlap #: 5 Alignment: ---------------CHHCBBYCCYGCCBCTGC MGGTCAGGGTGACCTRDBHV------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Reverse Complement MGGTCAGGGTGACCTVBHVVBYCCYGCCBCTGC BMSMGCCYMCTKSTGGMHM MGGTCAGGGTGACCTVBHVVBBCSCGCCYCCKBSTGGMHM Direction: Forward Position #: 22 Overlap #: 12 Alignment: MGGTCAGGGTGACCTVBHVVBYCCYGCCBCTGC------- ---------------------BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Original Motif YDRCCASVRGGKGGCGSGVBVVHBVAGGTCACCCTGACCY BTRGGDCARAGGKCA YDRCCASVRGGKGGCGSGVBVVHBBRGGKCAVMGKGMMCY Direction: Forward Position #: 24 Overlap #: 15 Alignment: YDRCCASVRGGKGGCGSGVBVVHBVAGGTCACCCTGACCY -----------------------BTRGGDCARAGGKCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Reverse Complement YDRCCASVRGGKGGCGSGVBVVHBBRGGKCAVMGKGMMCY VCTSTGKSCMKBCTRCYCTK YDRCCASVRGGKGGCGSGVBVVVCTVKGKCMMDBBKVMCYTK Direction: Forward Position #: 23 Overlap #: 18 Alignment: YDRCCASVRGGKGGCGSGVBVVHBBRGGKCAVMGKGMMCY-- ----------------------VCTSTGKSCMKBCTRCYCTK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement YDRCCASVRGGKGGCGSGVBVVVCTVKGKCMMDBBKVMCYTK BAGGYCABHBTGACCKHV YDRCCASVRGGKGGCGSGVBVVVCTVDGKHMAHBBTGMCCTBV Direction: Forward Position #: 26 Overlap #: 17 Alignment: YDRCCASVRGGKGGCGSGVBVVVCTVKGKCMMDBBKVMCYTK- -------------------------BAGGYCABHBTGACCKHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Reverse Complement YDRCCASVRGGKGGCGSGVBVVVCTVDGKHMAHBBTGMCCTBV GGYGCTGTCCATGGTGCTGAA YDRCCASVRGGKGGCGSGVBVGVCDCTGTCCAHGGTGCYSDDV Direction: Forward Position #: 22 Overlap #: 21 Alignment: YDRCCASVRGGKGGCGSGVBVVVCTVDGKHMAHBBTGMCCTBV ---------------------GGYGCTGTCCATGGTGCTGAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 47 Reverse Complement Original Motif VDDSMGCACCHTGGACAGHGVCVBBCSCGCCYCCKBSTGGMHM YGCCACCTDSTGGY YGCCACCTDSWGSHCCHTGGACAGHGVCVBBCSCGCCYCCKBSTGGMHM Direction: Forward Position #: 7 Overlap #: 8 Alignment: ------VDDSMGCACCHTGGACAGHGVCVBBCSCGCCYCCKBSTGGMHM YGCCACCTDSTGGY----------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sscCCCGCGcs Combined Motif Original Motif Original Motif YGCCACCTDSWGSHCCHTGGACAGHGVCVBBCSCGCCYCCKBSTGGMHM BSCCCCGCGBS YGCCACCTDSWGSHCCHTGGACAGHGVCVBBCSCSCCCSCGBSTGGMHM Direction: Forward Position #: 33 Overlap #: 11 Alignment: YGCCACCTDSWGSHCCHTGGACAGHGVCVBBCSCGCCYCCKBSTGGMHM --------------------------------BSCCCCGCGBS------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- gCGCGCsCgsG Combined Motif Original Motif Reverse Complement YGCCACCTDSWGSHCCHTGGACAGHGVCVBBCSCSCCCSCGBSTGGMHM CGCGSGCGCGC YGCCACCTDSWGSHCCHTGGACAGHGVCVBBCSCSCSCGCGCGYGGMHM Direction: Forward Position #: 34 Overlap #: 11 Alignment: YGCCACCTDSWGSHCCHTGGACAGHGVCVBBCSCSCCCSCGBSTGGMHM ---------------------------------CGCGSGCGCGC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 75 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwCCAmAGTCmt CACTGTGrYrtCACAGTGswsCAcT Original Motif Original Motif DDCCAMAGTCHB CACTGTGRTRTCACAGTGSWSCACT CACTGTGRHDYCACAGTSBWSCACT Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------DDCCAMAGTCHB----- CACTGTGRTRTCACAGTGSWSCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CagTGCTCCACTGTGgT Combined Motif Reverse Complement Reverse Complement AGTGSWBSACTGTGKHHMCACAGTG ABCACAGTGGAGCACTG AGTGSABCACWGTGGAGCMMYRGTG Direction: Forward Position #: 6 Overlap #: 17 Alignment: AGTGSWBSACTGTGKHHMCACAGTG -----ABCACAGTGGAGCACTG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAcCACAGTGGAGCAct Combined Motif Original Motif Original Motif AGTGSABCACWGTGGAGCMMYRGTG CAHCACAGTGGAGCACT AGTGCABCACWGTGGAGCAMYRGTG Direction: Forward Position #: 5 Overlap #: 17 Alignment: AGTGSABCACWGTGGAGCMMYRGTG ----CAHCACAGTGGAGCACT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AgTGCTCCACTGTGgTGTCACAgT Combined Motif Original Motif Original Motif AGTGCABCACWGTGGAGCAMYRGTG AGTGCTCCACTGTGGTGTCACAGT AGTGCWCCACWGTGGWGYMAYAGTG Direction: Forward Position #: 1 Overlap #: 24 Alignment: AGTGCABCACWGTGGAGCAMYRGTG AGTGCTCCACTGTGGTGTCACAGT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Original Motif Reverse Complement AGTGCWCCACWGTGGWGYMAYAGTG TGMYCTTTGBCCK AGTGCTSCACTKTGGHSBMAYAGTG Direction: Forward Position #: 6 Overlap #: 13 Alignment: AGTGCWCCACWGTGGWGYMAYAGTG -----TGMYCTTTGBCCK------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Original Motif Reverse Complement AGTGCTSCACTKTGGHSBMAYAGTG TGTGTGDKTGTGTGTGTRTG TGWGTGBKBSWSTGTGTDBKMAYAGTG Direction: Forward Position #: 3 Overlap #: 18 Alignment: --AGTGCTSCACTKTGGHSBMAYAGTG TGTGTGDKTGTGTGTGTRTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Original Motif Original Motif TGWGTGBKBSWSTGTGTDBKMAYAGTG TGGAGCACTGTGACAVCACAGTGG TGWGTGBWGSACTGTGWCABCACAGTGG Direction: Forward Position #: 5 Overlap #: 23 Alignment: TGWGTGBKBSWSTGTGTDBKMAYAGTG- ----TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Reverse Complement CCACTGTGBTGWCACAGTSCWBCACWCA GGYGCTGTCCATGGTGCTGAA GGYGCTGTCCAYKGTGCTGWMACAGTSCWBCACWCA Direction: Forward Position #: 9 Overlap #: 13 Alignment: --------CCACTGTGBTGWCACAGTSCWBCACWCA GGYGCTGTCCATGGTGCTGAA--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Reverse Complement Original Motif TGWGTGBWGSACTGTRWCAGCACYKTGGACAGCKCC TGTGGTGTCACAGTGCTCC TKKKGTGTMRCASTGYDHCAGCACYKTGGACAGCKCC Direction: Forward Position #: 2 Overlap #: 18 Alignment: -TGWGTGBWGSACTGTRWCAGCACYKTGGACAGCKCC TGTGGTGTCACAGTGCTCC------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif TKKKGTGTMRCASTGYDHCAGCACYKTGGACAGCKCC VDBHMAGGTCACCCTGACCY TKKKGTGTMRCASTGYDHCAGVACYBWGGWCAGCBYSACCY Direction: Forward Position #: 22 Overlap #: 16 Alignment: TKKKGTGTMRCASTGYDHCAGCACYKTGGACAGCKCC---- ---------------------VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 76 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAcCACAGTGGAGCAct AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement CAHCACAGTGGAGCACT ACTGTGACACCACAGTGGAGCACT ACTGTGACACCACAGTGGAGCACT Direction: Forward Position #: 8 Overlap #: 17 Alignment: -------CAHCACAGTGGAGCACT ACTGTGACACCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement AGTGCTCCACTGTGGTGTCACAGT AGTGSWSCACTGTGAMAMCACAGTG AGTGCTSCACTGTGVYRTCACAGTG Direction: Forward Position #: 1 Overlap #: 24 Alignment: AGTGCTCCACTGTGGTGTCACAGT- AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Reverse Complement AGTGCTSCACTGTGVYRTCACAGTG GGYGCTGTCCATGGTGCTGAA GGHGYKSTCCAYKGTGCTGHMACAGTG Direction: Forward Position #: 3 Overlap #: 19 Alignment: --AGTGCTSCACTGTGVYRTCACAGTG GGYGCTGTCCATGGTGCTGAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Reverse Complement Original Motif CACTGTRHCAGCACRKTGGASRKCHCC TGTGGTGTCACAGTGCTCC CACTGTGBYRKCACAGTGSWCVKCHCC Direction: Forward Position #: 4 Overlap #: 19 Alignment: CACTGTRHCAGCACRKTGGASRKCHCC ---TGTGGTGTCACAGTGCTCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Reverse Complement Original Motif GGHGYVGWSCACTGTGRMMBCACAGTG YDRCCASYAGRKGGCRSYV GGHGBCCASCASKGKGMVVHVACAGTG Direction: Forward Position #: 3 Overlap #: 19 Alignment: GGHGYVGWSCACTGTGRMMBCACAGTG --YDRCCASYAGRKGGCRSYV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Original Motif Original Motif GGHGBCCASCASKGKGMVVHVACAGTG TGGAGCACTGTGACAVCACAGTGG GGHGTSSAGCASTGTGACABCACAGTGG Direction: Forward Position #: 5 Overlap #: 23 Alignment: GGHGBCCASCASKGKGMVVHVACAGTG- ----TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CagTGCTCCACTGTGgT Combined Motif Original Motif Reverse Complement GGHGTSSAGCASTGTGACABCACAGTGG ABCACAGTGGAGCACTG GGHGTSSASCACWGTGRARCMMYRGTGG Direction: Forward Position #: 8 Overlap #: 17 Alignment: GGHGTSSAGCASTGTGACABCACAGTGG -------ABCACAGTGGAGCACTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Original Motif GGHGTSSASCACWGTGRARCMMYRGTGG AMTGTGACACCACAGT AVKDTKRCACCACAGTGRARCMMYRGTGG Direction: Forward Position #: 2 Overlap #: 15 Alignment: -GGHGTSSASCACWGTGRARCMMYRGTGG AMTGTGACACCACAGT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwCCAmAGTCmt Reverse Complement Reverse Complement CCACKKYYGMTMCACTGTGGTGKYAHRVT VDGACTRTGGDD VVSACTGTKGHTMCACTGTGGTGKYAHRVT Direction: Forward Position #: 2 Overlap #: 11 Alignment: -CCACKKYYGMTMCACTGTGGTGKYAHRVT VDGACTRTGGDD------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Reverse Complement VVSACTGTKGHTMCACTGTGGTGKYAHRVT VCTSTGKSCMKBCTRCYCTK VVSACTGTKGHTMCACTGYKSTGKCVMDBYTRCYCTK Direction: Forward Position #: 18 Overlap #: 13 Alignment: VVSACTGTKGHTMCACTGTGGTGKYAHRVT------- -----------------VCTSTGKSCMKBCTRCYCTK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 77 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AgTGCTCCACTGTGgTGTCACAgT CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement AGTGCTCCACTGTGGTGTCACAGT AGTGSWSCACTGTGAMAMCACAGTG ARKKGMKCMMYKKKRVWVYMMMRKK Direction: Forward Position #: 2 Overlap #: 24 Alignment: -AGTGCTCCACTGTGGTGTCACAGT AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement ARKKGMKCMMYKKKRVWVYMMMRKK CCACTGTGVTGTCACAGTGCTCCA CCACTGTGVTGTCAMAGTGCTCCAYKKKRVWVYMMMRKK Direction: Forward Position #: 15 Overlap #: 10 Alignment: --------------ARKKGMKCMMYKKKRVWVYMMMRKK CCACTGTGVTGTCACAGTGCTCCA--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Reverse Complement CCACTGTGVTGTCAMAGTGCTCCAYKKKRVWVYMMMRKK GGYGCTGTCCATGGTGCTGAA GGYGCTGTCCAYKGTGCTGWMAMAGTGCTCCAYKKKRVWVYMMMRKK Direction: Forward Position #: 9 Overlap #: 13 Alignment: --------CCACTGTGVTGTCAMAGTGCTCCAYKKKRVWVYMMMRKK GGYGCTGTCCATGGTGCTGAA-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Original Motif Reverse Complement GGYGCTGTCCAYKGTGCTGWMAMAGTGCTCCAYKKKRVWVYMMMRKK GGAGCACTGTGACACCACA GGYGCTGTCCAYKGTGCTGWMAMAGKGMKCMMTGTGACASYAMARKK Direction: Forward Position #: 26 Overlap #: 19 Alignment: GGYGCTGTCCAYKGTGCTGWMAMAGTGCTCCAYKKKRVWVYMMMRKK -------------------------GGAGCACTGTGACACCACA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Reverse Complement GGYGCTGTCCAYKGTGCTGWMAMAGKGMKCMMTGTGACASYAMARKK BMSMGCCYMCTKSTGGMHM GGYGCTGTCCAYKGTGCTGWMAMVVGSCBCCYTGTGRCHVYAMARKK Direction: Forward Position #: 22 Overlap #: 19 Alignment: GGYGCTGTCCAYKGTGCTGWMAMAGKGMKCMMTGTGACASYAMARKK ---------------------BMSMGCCYMCTKSTGGMHM------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAcCACAGTGGAGCAct Combined Motif Original Motif Original Motif GGYGCTGTCCAYKGTGCTGWMAMVVGSCBCCYTGTGRCHVYAMARKK CAHCACAGTGGAGCACT GGYGCTSWCCACWGTGSWGHMHHVVGSCBCCYTGTGRCHVYAMARKK Direction: Forward Position #: 7 Overlap #: 17 Alignment: GGYGCTGTCCAYKGTGCTGWMAMVVGSCBCCYTGTGRCHVYAMARKK ------CAHCACAGTGGAGCACT------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CagTGCTCCACTGTGgT Combined Motif Original Motif Original Motif GGYGCTSWCCACWGTGSWGHMHHVVGSCBCCYTGTGRCHVYAMARKK CAGTGCTCCACTGTGBT GGYGCTSWCCACAGTGCTSCACTGTGBYBCCYTGTGRCHVYAMARKK Direction: Forward Position #: 12 Overlap #: 17 Alignment: GGYGCTSWCCACWGTGSWGHMHHVVGSCBCCYTGTGRCHVYAMARKK -----------CAGTGCTCCACTGTGBT------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Original Motif GGYGCTSWCCACAGTGCTSCACTGTGBYBCCYTGTGRCHVYAMARKK AMTGTGACACCACAGT AVKBKSWCACCACAGTGCTSCACTGTGBYBCCYTGTGRCHVYAMARKK Direction: Forward Position #: 2 Overlap #: 15 Alignment: -GGYGCTSWCCACAGTGCTSCACTGTGBYBCCYTGTGRCHVYAMARKK AMTGTGACACCACAGT-------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Reverse Complement RRKTRTKVHGMCACAMGGVMBCACAGTGSAGCACTGTGGTGWSRBRVT VCTSTGKSCMKBCTRCYCTK RRKTRTKVHGMCACAMGGVMBCACAGTGSAVCWCTGTGSHKWCWVVHYTK Direction: Forward Position #: 31 Overlap #: 18 Alignment: RRKTRTKVHGMCACAMGGVMBCACAGTGSAGCACTGTGGTGWSRBRVT-- ------------------------------VCTSTGKSCMKBCTRCYCTK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif RAMDVVWGWYHSCACAGWGVTSCACTGTGBYBCCYTGTGRCHVYAMARKK VDBHMAGGTCACCCTGACCY RAMDVVWGWYHSCACAGWGVTSCACTGTGBYBVVBBVWGGBCACMCWGDBCY Direction: Forward Position #: 33 Overlap #: 18 Alignment: RAMDVVWGWYHSCACAGWGVTSCACTGTGBYBCCYTGTGRCHVYAMARKK-- --------------------------------VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 78 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGCkTGCssk gCGCGCsCgsG Original Motif Original Motif SSGCKTGCSSK GCGCGCSCGCG SCGCGYGCSSG Direction: Backward Position #: 1 Overlap #: 11 Alignment: SSGCKTGCSSK GCGCGCSCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCCCCGCSssk Reverse Complement Original Motif CSSGCKCGCGS SBCCCCGCCSBB SBCCCCGCCSSGCKCGCGS Direction: Forward Position #: 9 Overlap #: 4 Alignment: --------CSSGCKCGCGS SBCCCCGCCSBB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sscCCCGCGcs Combined Motif Original Motif Reverse Complement SBCCCCGCCSSGCKCGCGS SBCGCGGGGSB SBCCSCGCSGSGSKCGCGS Direction: Forward Position #: 4 Overlap #: 11 Alignment: SBCCCCGCCSSGCKCGCGS ---SBCGCGGGGSB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cCGCGGrCACG Combined Motif Original Motif Original Motif SBCCSCGCSGSGSKCGCGS CCGCGGRCACG SBCCCCGCGGRSVSSGCGS Direction: Forward Position #: 5 Overlap #: 11 Alignment: SBCCSCGCSGSGSKCGCGS ----CCGCGGRCACG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 79 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cCGCGGrCACG gCGCGCsCgsG Original Motif Original Motif CCGCGGRCACG GCGCGCSCGCG SCGCGSRCRCG Direction: Backward Position #: 1 Overlap #: 11 Alignment: CCGCGGRCACG GCGCGCSCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Original Motif Original Motif SCGCGSRCRCG CTGCTGBDBBDGBD SYGCKGVCDCDGBD Direction: Forward Position #: 1 Overlap #: 11 Alignment: SCGCGSRCRCG--- CTGCTGBDBBDGBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif HVCHGHGVCYGCMS TTCAGCACCATGGACAGCKCC TTCAGCACCATGGACAGCDCCGHGVCYGCMS Direction: Forward Position #: 18 Overlap #: 4 Alignment: -----------------HVCHGHGVCYGCMS TTCAGCACCATGGACAGCKCC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Reverse Complement SYGCKGVCDCGGHGCTGTCCATGGTGCTGAA MGGTCAGGGTGACCTRDBHV SYGCKGVBGYSRVGCTGWCCHDGGTVCTGAA Direction: Forward Position #: 7 Overlap #: 20 Alignment: SYGCKGVCDCGGHGCTGTCCATGGTGCTGAA ------MGGTCAGGGTGACCTRDBHV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCkTGCssk Original Motif Original Motif SYGCKGVBGYSRVGCTGWCCHDGGTVCTGAA SSGCKTGCSSK SBGCKKGCGSBRVGCTGWCCHDGGTVCTGAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: SYGCKGVBGYSRVGCTGWCCHDGGTVCTGAA SSGCKTGCSSK-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCCCCGCSssk Combined Motif Reverse Complement Reverse Complement TTCAGVACCDHGGWCAGCVKBSCGCRYGCBS BBSGGCGGGGBS TTCAGVACCBDGGRCRGSGBBSCGCRYGCBS Direction: Forward Position #: 10 Overlap #: 12 Alignment: TTCAGVACCDHGGWCAGCVKBSCGCRYGCBS ---------BBSGGCGGGGBS---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Reverse Complement Original Motif SBGCKKGCGSBBCSCMGMCCDVGGTVCTGAA YDRCCASYAGRKGGCRSYV SBGCKKGYGBCCMSCAGVSSGCGSYVCTGAA Direction: Forward Position #: 8 Overlap #: 19 Alignment: SBGCKKGCGSBBCSCMGMCCDVGGTVCTGAA -------YDRCCASYAGRKGGCRSYV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Reverse Complement TTCAGVMSCGCSSVCTGSYGGBCKCRYGCBS CTSTGTBKMCTGH TTCAGVMSCVHSTVYTKSHKGHCKCRYGCBS Direction: Forward Position #: 10 Overlap #: 13 Alignment: TTCAGVMSCGCSSVCTGSYGGBCKCRYGCBS ---------CTSTGTBKMCTGH--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 80 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- taaacgatgcc Motif 46 Original Motif Reverse Complement TAAACGATGCC TATKCTAAACCTAT TATTMWAMRMYKMY Direction: Backward Position #: 1 Overlap #: 11 Alignment: ---TAAACGATGCC TATKCTAAACCTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Original Motif Original Motif TATTMWAMRMYKMY AACATATTTTCA AACATATTHTMARMYKMY Direction: Forward Position #: 5 Overlap #: 8 Alignment: ----TATTMWAMRMYKMY AACATATTTTCA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 23 Original Motif Reverse Complement AACATATTHTMARMYKMY ATYAATGAAWACAT ATYAATGAAHAYATTHTMARMYKMY Direction: Forward Position #: 8 Overlap #: 7 Alignment: -------AACATATTHTMARMYKMY ATYAATGAAWACAT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Original Motif Original Motif ATYAATGAAHAYATTHTMARMYKMY AAAGGTCAAAGGTCAAC AAAGGTCAAAGRTCAAYGAAHAYATTHTMARMYKMY Direction: Forward Position #: 12 Overlap #: 6 Alignment: -----------ATYAATGAAHAYATTHTMARMYKMY AAAGGTCAAAGGTCAAC------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Original Motif Reverse Complement AAAGGTCAAAGRTCAAYGAAHAYATTHTMARMYKMY AKGYYCAAAGRTCA AKGYYCAAAGGTCAAAGRTCAAYGAAHAYATTHTMARMYKMY Direction: Forward Position #: 7 Overlap #: 8 Alignment: ------AAAGGTCAAAGRTCAAYGAAHAYATTHTMARMYKMY AKGYYCAAAGRTCA---------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 11 Combined Motif Reverse Complement Reverse Complement KYYKYKTYAHAATKTDTTCMTTGAKCTTTGACCTTTGMMCYT TTYAAACATYTT KYYKYKTYAHAATKTDTTCAWWSATCTTTGACCTTTGMMCYT Direction: Forward Position #: 17 Overlap #: 12 Alignment: KYYKYKTYAHAATKTDTTCMTTGAKCTTTGACCTTTGMMCYT ----------------TTYAAACATYTT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 45 Original Motif Original Motif KYYKYKTYAHAATKTDTTCAWWSATCTTTGACCTTTGMMCYT TAASTCTWTTTTAA TAABTCTHTTTWAAATKTDTTCAWWSATCTTTGACCTTTGMMCYT Direction: Forward Position #: 4 Overlap #: 11 Alignment: ---KYYKYKTYAHAATKTDTTCAWWSATCTTTGACCTTTGMMCYT TAASTCTWTTTTAA------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 Combined Motif Reverse Complement Original Motif AKGYYCAAAGGTCAAAGATSWWTGAAHAYATTTWAAAHAGABTTA AAAMATTGTTT AKGYYCAAAGGTCAAAVATTDTTKAAHAYATTTWAAAHAGABTTA Direction: Forward Position #: 14 Overlap #: 11 Alignment: AKGYYCAAAGGTCAAAGATSWWTGAAHAYATTTWAAAHAGABTTA -------------AAAMATTGTTT--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 81 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ctatacggacg Motif 27 Original Motif Reverse Complement CTATACGGACG CTTKACAGAAT CTWTACRGAMK Direction: Forward Position #: 1 Overlap #: 11 Alignment: CTATACGGACG CTTKACAGAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif srACyCCGAyr Reverse Complement Reverse Complement YYTCKGTAWAG KKTCGGKGTKS BBTCGGTRTDG Direction: Forward Position #: 1 Overlap #: 11 Alignment: YYTCKGTAWAG KKTCGGKGTKS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 46 Reverse Complement Reverse Complement CDAMACCGAVV TATKCTAAACCTAT TATKCTAAACCKADV Direction: Forward Position #: 5 Overlap #: 10 Alignment: ----CDAMACCGAVV TATKCTAAACCTAT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM1 Original Motif Reverse Complement TATKCTAAACCKADV TGTGTGWGTGTGTGTGTG TGTGTGWGTGTGTGTRTKCTAAACCKADV Direction: Forward Position #: 15 Overlap #: 4 Alignment: --------------TATKCTAAACCKADV TGTGTGWGTGTGTGTGTG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif taaacgatgcc Reverse Complement Reverse Complement BDTYGGTTTAGYAKACACACACWCACACA GGCATCGTTTA GGCWTSGTTTAGYAKACACACACWCACACA Direction: Forward Position #: 2 Overlap #: 10 Alignment: -BDTYGGTTTAGYAKACACACACWCACACA GGCATCGTTTA------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 20 Original Motif Original Motif GGCWTSGTTTAGYAKACACACACWCACACA TCCTCCTGGAA TCCTCCTGGAATSGTTTAGYAKACACACACWCACACA Direction: Forward Position #: 8 Overlap #: 4 Alignment: -------GGCWTSGTTTAGYAKACACACACWCACACA TCCTCCTGGAA-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 22 Original Motif Original Motif TCCTCCTGGAATSGTTTAGYAKACACACACWCACACA TTTATGGTGAGCAT TTTATGGTGAKCMTCCTGGAATSGTTTAGYAKACACACACWCACACA Direction: Forward Position #: 11 Overlap #: 4 Alignment: ----------TCCTCCTGGAATSGTTTAGYAKACACACACWCACACA TTTATGGTGAGCAT--------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 28 Original Motif Reverse Complement TTTATGGTGAKCMTCCTGGAATSGTTTAGYAKACACACACWCACACA TTTACTAAAT TTTACTWWATGGTGAKCMTCCTGGAATSGTTTAGYAKACACACACWCACACA Direction: Forward Position #: 6 Overlap #: 5 Alignment: -----TTTATGGTGAKCMTCCTGGAATSGTTTAGYAKACACACACWCACACA TTTACTAAAT------------------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 21 Original Motif Original Motif TTTACTWWATGGTGAKCMTCCTGGAATSGTTTAGYAKACACACACWCACACA CTGCTTTCCMAA CTGYTTWCYHAATGGTGAKCMTCCTGGAATSGTTTAGYAKACACACACWCACACA Direction: Forward Position #: 4 Overlap #: 9 Alignment: ---TTTACTWWATGGTGAKCMTCCTGGAATSGTTTAGYAKACACACACWCACACA CTGCTTTCCMAA------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MIZF Reverse Complement Original Motif TGTGTGWGTGTGTGTRTKCTAAACSATTCCAGGAYGYTCACCATTHKGWAAKCAG BAACGTCCGC BAACGTSYGYGWGTGTGTGTRTKCTAAACSATTCCAGGAYGYTCACCATTHKGWAAKCAG Direction: Forward Position #: 6 Overlap #: 5 Alignment: -----TGTGTGWGTGTGTGTRTKCTAAACSATTCCAGGAYGYTCACCATTHKGWAAKCAG BAACGTCCGC-------------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 82 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- gCGCGCsCgsG cCGCGGrCACG Original Motif Original Motif GCGCGCSCGCG CCGCGGRCACG SCGCGSRCRCG Direction: Backward Position #: 1 Overlap #: 11 Alignment: GCGCGCSCGCG CCGCGGRCACG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCkTGCssk Reverse Complement Reverse Complement CGKGMSCGCGS YSSGCAYGCSS CSBGCRCGCGS Direction: Forward Position #: 1 Overlap #: 11 Alignment: CGKGMSCGCGS YSSGCAYGCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sscCCCGCGcs Original Motif Reverse Complement CSBGCRCGCGS SBCGCGGGGSB CSCGCGSGSGS Direction: Forward Position #: 1 Overlap #: 11 Alignment: CSBGCRCGCGS SBCGCGGGGSB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCCCCGCSssk Original Motif Original Motif CSCGCGSGSGS SBCCCCGCCSBB SBCCCCGCCSSGCGSGSGS Direction: Forward Position #: 9 Overlap #: 4 Alignment: --------CSCGCGSGSGS SBCCCCGCCSBB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Reverse Complement SBCCCCGCCSSGCGSGSGS BMSMGCCYMCTKSTGGMHM BVCCSCSCCCTGSDGGCBV Direction: Forward Position #: 1 Overlap #: 19 Alignment: SBCCCCGCCSSGCGSGSGS BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Reverse Complement VBGCCDSCAGGGSGSGGVB MGGTCAGGGTGACCTRDBHV MGGTCAGGGTGACCTVBVCCDSCAGGGSGSGGVB Direction: Forward Position #: 16 Overlap #: 5 Alignment: ---------------VBGCCDSCAGGGSGSGGVB MGGTCAGGGTGACCTRDBHV-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Reverse Complement BVCCSCSCCCTGSDGGVBVAGGTCACCCTGACCY HVCDBBDBCAGCAG BVCCSCSCCCTGSDGGVBVAGGDCABBVTSASCWG Direction: Forward Position #: 22 Overlap #: 13 Alignment: BVCCSCSCCCTGSDGGVBVAGGTCACCCTGACCY- ---------------------HVCDBBDBCAGCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MIZF Original Motif Original Motif BVCCSCSCCCTGSDGGVBVAGGDCABBVTSASCWG BAACGTCCGC BHMCGYCCSCTGSDGGVBVAGGDCABBVTSASCWG Direction: Forward Position #: 1 Overlap #: 10 Alignment: BVCCSCSCCCTGSDGGVBVAGGDCABBVTSASCWG BAACGTCCGC------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 47 Original Motif Original Motif BHMCGYCCSCTGSDGGVBVAGGDCABBVTSASCWG YGCCACCTDSTGGY YGCCVCCYDSTGSHGGVBVAGGDCABBVTSASCWG Direction: Forward Position #: 1 Overlap #: 14 Alignment: BHMCGYCCSCTGSDGGVBVAGGDCABBVTSASCWG YGCCACCTDSTGGY--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Combined Motif Reverse Complement Reverse Complement CWGSTSAVBBTGDCCTVBVCCHSCASHKGGBGGCM DCCACGTGCV CWGSTSAVBBTGDCCWCGTSCVSCASHKGGBGGCM Direction: Forward Position #: 13 Overlap #: 10 Alignment: CWGSTSAVBBTGDCCTVBVCCHSCASHKGGBGGCM ------------DCCACGTGCV------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 83 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- srACyCCGAyr TFM11 Reverse Complement Reverse Complement KKTCGGKGTKS TGTGTGDKTGTGTGTGTRTG TGKKTSGGTGTGBGTGTRTG Direction: Backward Position #: 8 Overlap #: 11 Alignment: --KKTCGGKGTKS------- TGTGTGDKTGTGTGTGTRTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Original Motif CAMACACVCACACCSAYRCA VDBHMAGGTCACCCTGACCY VDBHMHRSWCACVCWSACCBAYRCA Direction: Forward Position #: 6 Overlap #: 15 Alignment: -----CAMACACVCACACCSAYRCA VDBHMAGGTCACCCTGACCY----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Original Motif VDBHMHRSWCACVCWSACCBAYRCA CACACACACACWCACACA VDBHMHRSWCACACACACMCAYACACACA Direction: Forward Position #: 12 Overlap #: 14 Alignment: VDBHMHRSWCACVCWSACCBAYRCA---- -----------CACACACACACWCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Original Motif TGTGTGTKTGYGTGTGTGTGWSMDRDBHV TGGAGCACTGTGACAVCACAGTGG TGGAGCACTGTGACAVCWSWGTGKKTGYGTGTGTGTGWSMDRDBHV Direction: Forward Position #: 18 Overlap #: 7 Alignment: -----------------TGTGTGTKTGYGTGTGTGTGWSMDRDBHV TGGAGCACTGTGACAVCACAGTGG---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif TGGAGCACTGTGACAVCWSWGTGKKTGYGTGTGTGTGWSMDRDBHV VHRGGTCABDBTGMCCTB TGGAGCACTGTGACAVCWSWGTGKKTGYGTGTVHRKGTCAVDDBVHCCTB Direction: Forward Position #: 33 Overlap #: 14 Alignment: TGGAGCACTGTGACAVCWSWGTGKKTGYGTGTGTGTGWSMDRDBHV---- --------------------------------VHRGGTCABDBTGMCCTB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Original Motif Original Motif TGGAGCACTGTGACAVCWSWGTGKKTGYGTGTVHRKGTCAVDDBVHCCTB TGTGGTGTCACAGTGCTCC TGGAGCACTGTGACAVCWSWGTKGKKGTGTSWCWGTGYYMCDDBVHCCTB Direction: Forward Position #: 23 Overlap #: 19 Alignment: TGGAGCACTGTGACAVCWSWGTGKKTGYGTGTVHRKGTCAVDDBVHCCTB ----------------------TGTGGTGTCACAGTGCTCC--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Reverse Complement Original Motif BAGGHVVHHGRMKCACWGWSACACRRCYACWSWGVTGTCACAGTGCTCCA CASABACWSACACA BAGGHVVHHGRMKCACWSASACWSAVACACWSWGVTGTCACAGTGCTCCA Direction: Forward Position #: 16 Overlap #: 14 Alignment: BAGGHVVHHGRMKCACWGWSACACRRCYACWSWGVTGTCACAGTGCTCCA ---------------CASABACWSACACA--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement TGGAGCACTGTGACAVCWSWGTGTVTSWGTSTSWGTGYYMCDDBVHCCTB AGTGSWSCACTGTGAMAMCACAGTG AGTGGAGCACTGTGACAVCACAGTGTVTSWGTSTSWGTGYYMCDDBVHCCTB Direction: Forward Position #: 3 Overlap #: 23 Alignment: --TGGAGCACTGTGACAVCWSWGTGTVTSWGTSTSWGTGYYMCDDBVHCCTB AGTGSWSCACTGTGAMAMCACAGTG--------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif BAGGHVVHHGRMKCACWSASACWSAVACACTGTGVTGTCACAGTGCTCCACT TTCAGCACCATGGACAGCKCC TTCAGCACCHHGGACAGCDVMKCACWSASACWSAVACACTGTGVTGTCACAGTGCTCCACT Direction: Forward Position #: 10 Overlap #: 12 Alignment: ---------BAGGHVVHHGRMKCACWSASACWSAVACACTGTGVTGTCACAGTGCTCCACT TTCAGCACCATGGACAGCKCC---------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Combined Motif Reverse Complement Reverse Complement AGTGGAGCACTGTGACAVCACAGTGTVTSWGTSTSWGTGYRVHGCTGTCCHHGGTGCTGAA GTGTGTGTGTGTGT AGTGGAGCACTGTGACAVCACAGTGTGTGTGTGTGTGTGYRVHGCTGTCCHHGGTGCTGAA Direction: Forward Position #: 25 Overlap #: 14 Alignment: AGTGGAGCACTGTGACAVCACAGTGTVTSWGTSTSWGTGYRVHGCTGTCCHHGGTGCTGAA ------------------------GTGTGTGTGTGTGT----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 84 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW3 TgTGgTGTCACAGTGCTCC Original Motif Reverse Complement GCACTG GGAGCACTGTGACACCACA GGAGCACTGTGMMMYSACA Direction: Forward Position #: 11 Overlap #: 6 Alignment: ----------GCACTG--- GGAGCACTGTGACACCACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement GGAGCACTGTGMMMYSACA AGTGSWSCACTGTGAMAMCACAGTG AGTGGAGCACTGTGMMMHCACAGTG Direction: Forward Position #: 4 Overlap #: 19 Alignment: ---GGAGCACTGTGMMMYSACA--- AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Original Motif AGTGGAGCACTGTGMMMHCACAGTG TGGAGCACTGTGACAVCACAGTGG TGGAGCACTGTGACAVCACAGTGGAGCACTGTGMMMHCACAGTG Direction: Forward Position #: 20 Overlap #: 5 Alignment: -------------------AGTGGAGCACTGTGMMMHCACAGTG TGGAGCACTGTGACAVCACAGTGG-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAcCACAGTGGAGCAct Combined Motif Reverse Complement Reverse Complement CACTGTGDYRYCACAGTGCTCCACTGTGVTGTCACAGTGCTCCA AGTGCTCCACTGTGDTG CACTGTGDYRYCACAGTGCTCCACTGTGVTGTCACAGTGCTCCA Direction: Forward Position #: 15 Overlap #: 17 Alignment: CACTGTGDYRYCACAGTGCTCCACTGTGVTGTCACAGTGCTCCA --------------AGTGCTCCACTGTGDTG------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CagTGCTCCACTGTGgT Combined Motif Original Motif Original Motif CACTGTGDYRYCACAGTGCTCCACTGTGVTGTCACAGTGCTCCA CAGTGCTCCACTGTGBT CACTGTGDYRYCACAGTGCTCCACTGTGBTGTCACAGTGCTCCA Direction: Forward Position #: 14 Overlap #: 17 Alignment: CACTGTGDYRYCACAGTGCTCCACTGTGVTGTCACAGTGCTCCA -------------CAGTGCTCCACTGTGBT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AgTGCTCCACTGTGgTGTCACAgT Combined Motif Reverse Complement Reverse Complement TGGAGCACTGTGACABCACAGTGGAGCACTGTGMMMHCACAGTG ACTGTGACACCACAGTGGAGCACT TGGAGCACTGTGACACCACAGTGGAGCACTGTGMMMHCACAGTG Direction: Forward Position #: 7 Overlap #: 24 Alignment: TGGAGCACTGTGACABCACAGTGGAGCACTGTGMMMHCACAGTG ------ACTGTGACACCACAGTGGAGCACT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Reverse Complement CACTGTGDYRYCACAGTGCTCCACTGTGGTGTCACAGTGCTCCA GGYGCTGTCCATGGTGCTGAA GGYGCTGTCCAYKGTGCTGHMACAGTGCTCCACTGTGGTGTCACAGTGCTCCA Direction: Forward Position #: 10 Overlap #: 12 Alignment: ---------CACTGTGDYRYCACAGTGCTCCACTGTGGTGTCACAGTGCTCCA GGYGCTGTCCATGGTGCTGAA-------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Tcfcp2l1 Original Motif Original Motif GGYGCTGTCCAYKGTGCTGHMACAGTGCTCCACTGTGGTGTCACAGTGCTCCA CCAGYYHVADCCRG CCRGYBCTRTCCAGKGTGCTGHMACAGTGCTCCACTGTGGTGTCACAGTGCTCCA Direction: Forward Position #: 3 Overlap #: 12 Alignment: --GGYGCTGTCCAYKGTGCTGHMACAGTGCTCCACTGTGGTGTCACAGTGCTCCA CCAGYYHVADCCRG----------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Original Motif Original Motif CCRGYBCTRTCCAGKGTGCTGHMACAGTGCTCCACTGTGGTGTCACAGTGCTCCA CWGAGCCAYCTYTC CWGAGCCASCTCTBTCCAGKGTGCTGHMACAGTGCTCCACTGTGGTGTCACAGTGCTCCA Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----CCRGYBCTRTCCAGKGTGCTGHMACAGTGCTCCACTGTGGTGTCACAGTGCTCCA CWGAGCCAYCTYTC---------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwCCAmAGTCmt Combined Motif Original Motif Original Motif CWGAGCCASCTCTBTCCAGKGTGCTGHMACAGTGCTCCACTGTGGTGTCACAGTGCTCCA DDCCAMAGTCHB CWGAGCCASCTCTBTCCAGKGTGCTDCCACAGTSCTCCACTGTGGTGTCACAGTGCTCCA Direction: Forward Position #: 25 Overlap #: 12 Alignment: CWGAGCCASCTCTBTCCAGKGTGCTGHMACAGTGCTCCACTGTGGTGTCACAGTGCTCCA ------------------------DDCCAMAGTCHB------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 85 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW1 Motif 21 Original Motif Reverse Complement TTGCGCAA TTYGGAAAGCAG TTYGKWRMGCAR Direction: Backward Position #: 1 Overlap #: 8 Alignment: ----TTGCGCAA TTYGGAAAGCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Original Motif Original Motif TTYGKWRMGCAR TGAMCTTTGMMCYT TGAMCTTTGDWVMKCAR Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----TTYGKWRMGCAR TGAMCTTTGMMCYT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Reverse Complement TGAMCTTTGDWVMKCAR TGRCCTKTGHCCKAB TGACCTTTGBMCDDCAR Direction: Forward Position #: 1 Overlap #: 15 Alignment: TGAMCTTTGDWVMKCAR TGRCCTKTGHCCKAB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 86 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW2 wwCCAmAGTCmt Original Motif Reverse Complement YGGACTTACG VDGACTRTGGDD VDBRSWSTKRHB Direction: Backward Position #: 1 Overlap #: 10 Alignment: --YGGACTTACG VDGACTRTGGDD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Esrrb Reverse Complement Original Motif BDMYASWSKBHB VBBYCAAGGTCA VBVHCAAKGTCAB Direction: Forward Position #: 2 Overlap #: 11 Alignment: -BDMYASWSKBHB VBBYCAAGGTCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Original Motif Original Motif VBVHCAAKGTCAB RGGBCAAAGKYCA VGDBCAARGKYMD Direction: Forward Position #: 1 Overlap #: 13 Alignment: VBVHCAAKGTCAB RGGBCAAAGKYCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Reverse Complement DRKRCKTTGBHCB GGYGCTGTCCATGGTGCTGAA DGBRCTKTSCHHGGTGCTGAA Direction: Forward Position #: 1 Overlap #: 13 Alignment: DRKRCKTTGBHCB-------- GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Original Motif Original Motif DGBRCTKTSCHHGGTGCTGAA TGAMCTTTGMMCYT KGAVCTTTGVMCBGTGCTGAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: DGBRCTKTSCHHGGTGCTGAA TGAMCTTTGMMCYT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Reverse Complement KGAVCTTTGVMCBGTGCTGAA MGGTCAGGGTGACCTRDBHV MGGTCAGGGTGACCTRKGHVCTTTGVMCBGTGCTGAA Direction: Forward Position #: 17 Overlap #: 4 Alignment: ----------------KGAVCTTTGVMCBGTGCTGAA MGGTCAGGGTGACCTRDBHV----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Reverse Complement MGGTCAGGGTGACCTRKGHVCTTTGVMCBGTGCTGAA TGRCCTKTGHCCKAB MGGTCAGGGTGACCTKTGHCCTDTGVMCBGTGCTGAA Direction: Forward Position #: 10 Overlap #: 15 Alignment: MGGTCAGGGTGACCTRKGHVCTTTGVMCBGTGCTGAA ---------TGRCCTKTGHCCKAB------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Reverse Complement Reverse Complement TTCAGCACBGYVCADAGGDCAYAGGTCACCCTGACCY AAGSATTTTCA AAGSATTTTCAGCACBGYVCADAGGDCAYAGGTCACCCTGACCY Direction: Forward Position #: 8 Overlap #: 4 Alignment: -------TTCAGCACBGYVCADAGGDCAYAGGTCACCCTGACCY AAGSATTTTCA--------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Reverse Complement Original Motif MGGTCAGGGTGACCTKTGHCCTDTGVMCBGTGCTGAAAATSCTT AGGACAAAGAVV MGGTCAGGGTGACCTKWGVHCWHDGVVHBGTGCTGAAAATSCTT Direction: Forward Position #: 17 Overlap #: 12 Alignment: MGGTCAGGGTGACCTKTGHCCTDTGVMCBGTGCTGAAAATSCTT ----------------AGGACAAAGAVV---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Original Motif Original Motif MGGTCAGGGTGACCTKWGVHCWHDGVVHBGTGCTGAAAATSCTT AAAGGTCAAAGGTCAAC AAAGGTCAAAGGTCARSGTGACCTKWGVHCWHDGVVHBGTGCTGAAAATSCTT Direction: Forward Position #: 10 Overlap #: 8 Alignment: ---------MGGTCAGGGTGACCTKWGVHCWHDGVVHBGTGCTGAAAATSCTT AAAGGTCAAAGGTCAAC------------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 87 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 HNF4A Reverse Complement Reverse Complement VVTCTTTGTCCT TGMYCTTTGBCCK TGVYCTTTGBCCT Direction: Forward Position #: 2 Overlap #: 12 Alignment: -VVTCTTTGTCCT TGMYCTTTGBCCK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Reverse Complement TGVYCTTTGBCCT TGRCCTKTGHCCKAB TGRCCTKTGHCYKVBCTTTGBCCT Direction: Forward Position #: 12 Overlap #: 4 Alignment: -----------TGVYCTTTGBCCT TGRCCTKTGHCCKAB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif TGRCCTKTGHCYKVBCTTTGBCCT VHRGGTCABDBTGMCCTB HDRSSTYWSBBTGMCCTBTGBCCT Direction: Forward Position #: 1 Overlap #: 18 Alignment: TGRCCTKTGHCYKVBCTTTGBCCT VHRGGTCABDBTGMCCTB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif HDRSSTYWSBBTGMCCTBTGBCCT VDBHMAGGTCACCCTGACCY HDRVVBCHVGGTSACCYTKRCCCT Direction: Forward Position #: 4 Overlap #: 20 Alignment: HDRSSTYWSBBTGMCCTBTGBCCT ---VDBHMAGGTCACCCTGACCY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Reverse Complement AGGGMYAMGGTSACCBHGVVVKHH VCTSTGKSCMKBCTRCYCTK AGGGMYAMGGTSVCHBTGDSVHBHCTRCYCTK Direction: Forward Position #: 13 Overlap #: 12 Alignment: AGGGMYAMGGTSACCBHGVVVKHH-------- ------------VCTSTGKSCMKBCTRCYCTK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Original Motif Reverse Complement AGGGMYAMGGTSVCHBTGDSVHBHCTRCYCTK AKGYYCAAAGRTCA ARGBBCWAAGRTCACHBTGDSVHBHCTRCYCTK Direction: Forward Position #: 2 Overlap #: 13 Alignment: -AGGGMYAMGGTSVCHBTGDSVHBHCTRCYCTK AKGYYCAAAGRTCA------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Original Motif Original Motif ARGBBCWAAGRTCACHBTGDSVHBHCTRCYCTK AAAGGTCAAAGGTCAAC AAAGGTCAAAGGTCAMYBTGDSVHBHCTRCYCTK Direction: Forward Position #: 2 Overlap #: 16 Alignment: -ARGBBCWAAGRTCACHBTGDSVHBHCTRCYCTK AAAGGTCAAAGGTCAAC----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement RAGKGMAGHVHVSHCABKYTGACCTTTGACCTTT AGTGSWSCACTGTGAMAMCACAGTG AGTGVAGBRCWGTGHVVHCACAGTGACCTTTGACCTTT Direction: Forward Position #: 5 Overlap #: 21 Alignment: ----RAGKGMAGHVHVSHCABKYTGACCTTTGACCTTT AGTGSWSCACTGTGAMAMCACAGTG------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement AGTGVAGBRCWGTGHVVHCACAGTGACCTTTGACCTTT CCACTGTGVTGTCACAGTGCTCCA CCACTGTRGTGBMRCASTGYKMCAHCACAGTGACCTTTGACCTTT Direction: Forward Position #: 8 Overlap #: 17 Alignment: -------AGTGVAGBRCWGTGHVVHCACAGTGACCTTTGACCTTT CCACTGTGVTGTCACAGTGCTCCA--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif AAAGGTCAAAGGTCACTGTGDTGRRKCASTGKRVCACKACAGTGG TTCAGCACCATGGACAGCKCC TWMAGSWCMAWGGWCAGBGYSDTGRRKCASTGKRVCACKACAGTGG Direction: Forward Position #: 2 Overlap #: 20 Alignment: -AAAGGTCAAAGGTCACTGTGDTGRRKCASTGKRVCACKACAGTGG TTCAGCACCATGGACAGCKCC------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 88 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 TFM2 Original Motif Reverse Complement CTGCTGBDBBDGBD GCAGAKGSAGGABDGHDG GCWGMTGSDGBHBDVHDG Direction: Forward Position #: 2 Overlap #: 14 Alignment: -CTGCTGBDBBDGBD--- GCAGAKGSAGGABDGHDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Reverse Complement Reverse Complement CHHVHBHBCDSCARCWGC VCTSTGKSCMKBCTRCYCTK VCTSTGKSCMKBCTRCYHTBHBHBCDSCARCWGC Direction: Forward Position #: 17 Overlap #: 4 Alignment: ----------------CHHVHBHBCDSCARCWGC VCTSTGKSCMKBCTRCYCTK-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Reverse Complement VCTSTGKSCMKBCTRCYHTBHBHBCDSCARCWGC GGYGCTGTCCATGGTGCTGAA VCTSTGKSVVBBCTGYCCHBGGTSCTGMARCWGC Direction: Forward Position #: 9 Overlap #: 21 Alignment: VCTSTGKSCMKBCTRCYHTBHBHBCDSCARCWGC --------GGYGCTGTCCATGGTGCTGAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Reverse Complement GCWGMTRCAGSACCVHGGMCAGBVVVSRCASAGV MGGTCAGGGTGACCTRDBHV GCWGMTRCAGSACCVHGGMCAGGHCAGRSWGASCTRDBHV Direction: Forward Position #: 21 Overlap #: 14 Alignment: GCWGMTRCAGSACCVHGGMCAGBVVVSRCASAGV------ --------------------MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif GCWGMTRCAGSACCVHGGMCAGGHCAGRSWGASCTRDBHV VHRGGTCABDBTGMCCTB GCWGMTRCAGSACCVHGGMCAGGHCHRGGTSASBKDGVCCTB Direction: Forward Position #: 25 Overlap #: 16 Alignment: GCWGMTRCAGSACCVHGGMCAGGHCAGRSWGASCTRDBHV-- ------------------------VHRGGTCABDBTGMCCTB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Original Motif BAGGBCDRBSTSACCMHGHCCTGYCCHBGGTSCTGMARCWGC BTRGGDCARAGGKCA BAGGBCDRBSTSACCMHGHCCTGYCCHBRGKBCWRARGYHRC Direction: Forward Position #: 27 Overlap #: 15 Alignment: BAGGBCDRBSTSACCMHGHCCTGYCCHBGGTSCTGMARCWGC --------------------------BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Original Motif Original Motif BAGGBCDRBSTSACCMHGHCCTGYCCHBRGKBCWRARGYHRC TGTGGTGTCACAGTGCTCC BAGKBYGVTGTCACMSTGCYCYGYCCHBRGKBCWRARGYHRC Direction: Forward Position #: 4 Overlap #: 19 Alignment: BAGGBCDRBSTSACCMHGHCCTGYCCHBRGKBCWRARGYHRC ---TGTGGTGTCACAGTGCTCC-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Original Motif Original Motif BAGKBYGVTGTCACMSTGCYCYGYCCHBRGKBCWRARGYHRC TGGAGCACTGTGACAVCACAGTGG BAGKBYKGKRKCACWGTGAYMCSACMGTGGKBCWRARGYHRC Direction: Forward Position #: 7 Overlap #: 24 Alignment: BAGKBYGVTGTCACMSTGCYCYGYCCHBRGKBCWRARGYHRC ------TGGAGCACTGTGACAVCACAGTGG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 Combined Motif Reverse Complement Reverse Complement GKDKCMTMWGBYCCACYGTSGYKTCACWGTGRKYCRMBRCTB CKGGDTBDMMCTGG GKDKCMTMWGBYCCACYGTSGYKTCACCKKGDTBBAMCDSKB Direction: Forward Position #: 28 Overlap #: 14 Alignment: GKDKCMTMWGBYCCACYGTSGYKTCACWGTGRKYCRMBRCTB ---------------------------CKGGDTBDMMCTGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Reverse Complement GKDKCMTMWGBYCCACYGTSGYKTCACCKKGDTBBAMCDSKB BMSMGCCYMCTKSTGGMHM GKDKCMTMWGBYCCACYGTSGYKTCACCKDGVKCCHMCTBSTGGMHM Direction: Forward Position #: 29 Overlap #: 14 Alignment: GKDKCMTMWGBYCCACYGTSGYKTCACCKKGDTBBAMCDSKB----- ----------------------------BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 89 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 TFM11 Original Motif Original Motif CACACACACACWCACACA CAMACACACACAYDCACACA CACACACACACAYDCACACA Direction: Forward Position #: 3 Overlap #: 18 Alignment: --CACACACACACWCACACA CAMACACACACAYDCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Original Motif Reverse Complement CACACACACACAYDCACACA BTTHAAAAAAYAAAAAAR BTTHMAMAMACAMAMAMRCACACA Direction: Forward Position #: 5 Overlap #: 14 Alignment: ----CACACACACACAYDCACACA BTTHAAAAAAYAAAAAAR------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Reverse Complement TGTGTGKYTRTRTGTYTYTRDAAB MGGTCAGGGTGACCTRDBHV MGGTCAGGGTGAYSTGBGBHTRTRTGTYTYTRDAAB Direction: Forward Position #: 13 Overlap #: 8 Alignment: ------------TGTGTGKYTRTRTGTYTYTRDAAB MGGTCAGGGTGACCTRDBHV---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Reverse Complement MGGTCAGGGTGAYSTGBGBHTRTRTGTYTYTRDAAB GGAGCACTGTGACACCACA RGRKCASKGTGACMYBDSDHTRTRTGTYTYTRDAAB Direction: Forward Position #: 1 Overlap #: 19 Alignment: MGGTCAGGGTGAYSTGBGBHTRTRTGTYTYTRDAAB GGAGCACTGTGACACCACA----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif RGRKCASKGTGACMYBDSDHTRTRTGTYTYTRDAAB TTTTTTTKTTKTTTAATTHW RGRKCASKGTGACMYBWBTBTTTDTKTTTTWAKWAD Direction: Forward Position #: 17 Overlap #: 20 Alignment: RGRKCASKGTGACMYBDSDHTRTRTGTYTYTRDAAB ----------------TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Original Motif Reverse Complement RGRKCASKGTGACMYBWBTBTTTDTKTTTTWAKWAD TGTGTSWGTBTSTG RGRKCASKGTKRYVTSWBTBTBTGTKTTTTWAKWAD Direction: Forward Position #: 11 Overlap #: 14 Alignment: RGRKCASKGTGACMYBWBTBTTTDTKTTTTWAKWAD ----------TGTGTSWGTBTSTG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Original Motif Reverse Complement RGRKCASKGTKRYVTSWBTBTBTGTKTTTTWAKWAD TTTRKTTTHTTTTH RGRKCASKGTKRYVTSWBTBTTTKKKTTTTTWTWWD Direction: Forward Position #: 22 Overlap #: 14 Alignment: RGRKCASKGTKRYVTSWBTBTBTGTKTTTTWAKWAD ---------------------TTTRKTTTHTTTTH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Combined Motif Reverse Complement Original Motif DWWAWAAAAARRRAAAVABWSAVMMYACRSTGYMCM ACACACACACACAC DWWAWACAMAMAVAMACACWSAVMMYACRSTGYMCM Direction: Forward Position #: 6 Overlap #: 14 Alignment: DWWAWAAAAARRRAAAVABWSAVMMYACRSTGYMCM -----ACACACACACACAC----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif DWWAWACAMAMAVAMACACWSAVMMYACRSTGYMCM VHRGGTCABDBTGMCCTB DWWAWACAMAVAVRSWCACDBWGMCCWBRSTGYMCM Direction: Forward Position #: 11 Overlap #: 18 Alignment: DWWAWACAMAMAVAMACACWSAVMMYACRSTGYMCM ----------VHRGGTCABDBTGMCCTB-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif RGRKCASKBWGGYCWBDGTGWSMBTVTRTGTWTWWD TTCAGCACCATGGACAGCKCC TTCAGCACCADGGDCAGBDHBGYCWBDGTGWSMBTVTRTGTWTWWD Direction: Forward Position #: 11 Overlap #: 11 Alignment: ----------RGRKCASKBWGGYCWBDGTGWSMBTVTRTGTWTWWD TTCAGCACCATGGACAGCKCC------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 90 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 TFM12 Reverse Complement Original Motif GCAGAKGSAGGABDGHDG RAGKGMAGVRRGSRCASAGV RAGBRSAGGVRGSVBDGAGB Direction: Forward Position #: 3 Overlap #: 18 Alignment: --GCAGAKGSAGGABDGHDG RAGKGMAGVRRGSRCASAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif RAGBRSAGGVRGSVBDGAGB VDBHMAGGTCACCCTGACCY RAGBRSAGGVDBBVVRGWSACCCTGACCY Direction: Forward Position #: 10 Overlap #: 11 Alignment: RAGBRSAGGVRGSVBDGAGB--------- ---------VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Reverse Complement Reverse Complement MGGTCAGGGTSWCMBBBBDVCCTSKBCTK BMSMGCCYMCTKSTGGMHM MGGTCAGGGTSWCMBBVSHGCCYMCTBBTGGMHM Direction: Forward Position #: 16 Overlap #: 14 Alignment: MGGTCAGGGTSWCMBBBBDVCCTSKBCTK----- ---------------BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement MGGTCAGGGTSWCMBBVSHGCCYMCTBBTGGMHM CCACTGTGVTGTCACAGTGCTCCA CCACTGTGVKGTCASRGTGHYCCHVSHGCCYMCTBBTGGMHM Direction: Forward Position #: 9 Overlap #: 16 Alignment: --------MGGTCAGGGTSWCMBBVSHGCCYMCTBBTGGMHM CCACTGTGVTGTCACAGTGCTCCA------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif CCACTGTGVKGTCASRGTGHYCCHVSHGCCYMCTBBTGGMHM VHRGGTCABDBTGMCCTB CCACTGTGVKGTCASRGTGHYCCHVVHRSSTCMBBBTGVCCHB Direction: Forward Position #: 26 Overlap #: 17 Alignment: CCACTGTGVKGTCASRGTGHYCCHVSHGCCYMCTBBTGGMHM- -------------------------VHRGGTCABDBTGMCCTB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Original Motif CCACTGTGVKGTCASRGTGHYCCHVVHRSSTCMBBBTGVCCHB BTRGGDCARAGGKCA CCACTGTGVKGTCASRGTGHYCCHVVHRGGBCADDGKGVMCHB Direction: Forward Position #: 26 Overlap #: 15 Alignment: CCACTGTGVKGTCASRGTGHYCCHVVHRSSTCMBBBTGVCCHB -------------------------BTRGGDCARAGGKCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Reverse Complement Original Motif BHGYVCYCDDTGVCCMHVVHGGMDCACKSTGACRBCACAGTGG CACTGTGRTRTCACAGTGSWSCACT BHGYACTSTGDBRYCACAGTGSWBCACTSTGACRBCACAGTGG Direction: Forward Position #: 4 Overlap #: 25 Alignment: BHGYVCYCDDTGVCCMHVVHGGMDCACKSTGACRBCACAGTGG ---CACTGTGRTRTCACAGTGSWSCACT--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Reverse Complement CCACTGTGVKGTCASAGTGBWSCACTGTGKMVDCASAGTKCHB HVCDBBDBCAGCAG CCACTGTGVKGTCASAGTGBWSCACTGTGBVVDBHBVSAGCWB Direction: Forward Position #: 30 Overlap #: 14 Alignment: CCACTGTGVKGTCASAGTGBWSCACTGTGKMVDCASAGTKCHB -----------------------------HVCDBBDBCAGCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 Combined Motif Original Motif Reverse Complement CCACTGTGVKGTCASAGTGBWSCACTGTGBVVDBHBVSAGCWB CKGGDTBDMMCTGG CCACTGTGVKGTCASAGTGBWSCACCKKGDHBDHHCDGRGCWB Direction: Forward Position #: 26 Overlap #: 14 Alignment: CCACTGTGVKGTCASAGTGBWSCACTGTGBVVDBHBVSAGCWB -------------------------CKGGDTBDMMCTGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Reverse Complement Original Motif BWGCMCDGHDHBHDCYYGGTGSWBCACTSTGACRBCACAGTGG TTCAGCACCATGGACAGCKCC BWGCMCDKTCAGVACCHBGKRSAGCACYSTGACRBCACAGTGG Direction: Forward Position #: 8 Overlap #: 21 Alignment: BWGCMCDGHDHBHDCYYGGTGSWBCACTSTGACRBCACAGTGG -------TTCAGCACCATGGACAGCKCC--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 91 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 TFM13 Original Motif Original Motif KTTTTTTKTTTTTTDAAB TTTTTTTKTTKTTTAATTHW TTTTTTTKTTTTTTDAWKHW Direction: Forward Position #: 1 Overlap #: 18 Alignment: KTTTTTTKTTTTTTDAAB-- TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM1 Original Motif Reverse Complement TTTTTTTKTTTTTTDAWKHW TGTGTGWGTGTGTGTGTG TGTGTGWGTGTGTGTKTKTTTKTTTTTTDAWKHW Direction: Forward Position #: 15 Overlap #: 4 Alignment: --------------TTTTTTTKTTTTTTDAWKHW TGTGTGWGTGTGTGTGTG---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Reverse Complement TGTGTGWGTGTGTGTKTKTTTKTTTTTTDAWKHW TGTGTGDKTGTGTGTGTRTG TGTGTGWGTGTGTGTKTGTKTGTKTKTKDAWKHW Direction: Forward Position #: 9 Overlap #: 20 Alignment: TGTGTGWGTGTGTGTKTKTTTKTTTTTTDAWKHW --------TGTGTGDKTGTGTGTGTRTG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 49 Original Motif Reverse Complement TGTGTGWGTGTGTGTKTGTKTGTKTKTKDAWKHW ATTTTTTTTTTTTT ATTTTTTTTTKTKTGWGTGTGTGTKTGTKTGTKTKTKDAWKHW Direction: Forward Position #: 10 Overlap #: 5 Alignment: ---------TGTGTGWGTGTGTGTKTGTKTGTKTKTKDAWKHW ATTTTTTTTTTTTT----------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Reverse Complement Original Motif WHRWTDRARARACARACAYACACACACWCARARAAAAAAAAAT HAAAAHAAARMAAA WHRWTDRARARACARACAYACACACACWMAAAVAAAAAAAAAT Direction: Forward Position #: 28 Overlap #: 14 Alignment: WHRWTDRARARACARACAYACACACACWCARARAAAAAAAAAT ---------------------------HAAAAHAAARMAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 33 Combined Motif Original Motif Reverse Complement WHRWTDRARARACARACAYACACACACWMAAAVAAAAAAAAAT TWAAAKACATTAAA WHRWTDRARARACARACWWAMABACATTAAAAVAAAAAAAAAT Direction: Forward Position #: 18 Overlap #: 14 Alignment: WHRWTDRARARACARACAYACACACACWMAAAVAAAAAAAAAT -----------------TWAAAKACATTAAA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Original Motif Original Motif WHRWTDRARARACARACWWAMABACATTAAAAVAAAAAAAAAT CASABACWSACACA WHRWTDRARARACARACWBAVACACAYWMAAAVAAAAAAAAAT Direction: Forward Position #: 17 Overlap #: 14 Alignment: WHRWTDRARARACARACWWAMABACATTAAAAVAAAAAAAAAT ----------------CASABACWSACACA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 45 Combined Motif Original Motif Reverse Complement WHRWTDRARARACARACWBAVACACAYWMAAAVAAAAAAAAAT TTAAAAWAGASTTA WHRWTDTWAAAAHAGACTTAVACACAYWMAAAVAAAAAAAAAT Direction: Forward Position #: 7 Overlap #: 14 Alignment: WHRWTDRARARACARACWBAVACACAYWMAAAVAAAAAAAAAT ------TTAAAAWAGASTTA----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Combined Motif Original Motif Original Motif WHRWTDTWAAAAHAGACTTAVACACAYWMAAAVAAAAAAAAAT AAAGRTMAAACTA WHRWTDTWAAAAHAGACTTAVACACAYAAARATAAAAMWAAAT Direction: Forward Position #: 28 Overlap #: 13 Alignment: WHRWTDTWAAAAHAGACTTAVACACAYWMAAAVAAAAAAAAAT ---------------------------AAAGRTMAAACTA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 23 Reverse Complement Original Motif ATTTWRTTTTATMTTTKTGTGTVTAAGTCTHTTTTWADAWKDW ATGTWTTCATTMAT ATKTWKTYWTTHATTTKTGTGTVTAAGTCTHTTTTWADAWKDW Direction: Forward Position #: 1 Overlap #: 14 Alignment: ATTTWRTTTTATMTTTKTGTGTVTAAGTCTHTTTTWADAWKDW ATGTWTTCATTMAT----------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 92 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 TFM13 Reverse Complement Original Motif TGTGTGDKTGTGTGTGTRTG TTTTTTTKTTKTTTAATTHW TTKTKTKKTTKTKTRWKTVTG Direction: Forward Position #: 2 Overlap #: 19 Alignment: -TGTGTGDKTGTGTGTGTRTG TTTTTTTKTTKTTTAATTHW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Reverse Complement TTKTKTKKTTKTKTRWKTVTG TGTGTGWGTGTGTGTGTG TTKTKTGKKTGTGTGTGTDTG Direction: Forward Position #: 2 Overlap #: 18 Alignment: TTKTKTKKTTKTKTRWKTVTG -TGTGTGWGTGTGTGTGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Original Motif TTKTKTGKKTGTGTGTGTDTG TGTGGTGTCACAGTGCTCC TGTKGTGTSABWGTGYKYSTDTG Direction: Forward Position #: 3 Overlap #: 17 Alignment: --TTKTKTGKKTGTGTGTGTDTG TGTGGTGTCACAGTGCTCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif TGTKGTGTSABWGTGYKYSTDTG KTTTTTTKTTTTTTDAAB TGTKKTKTYWBTKTKTKDAWBTG Direction: Forward Position #: 4 Overlap #: 18 Alignment: TGTKGTGTSABWGTGYKYSTDTG ---KTTTTTTKTTTTTTDAAB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Reverse Complement Original Motif CABWTDRARARABWMARARRACA CASABACWSACACA CABWYAVAVAVWVACAMARRACA Direction: Forward Position #: 5 Overlap #: 14 Alignment: CABWTDRARARABWMARARRACA ----CASABACWSACACA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Reverse Complement TGTKKTRTGTVWVTVTVTKWBTG VCTSTGKSCMKBCTRCYCTK TGTKKTRTGTVDSTVTSTBHVTKCTRCYCTK Direction: Forward Position #: 12 Overlap #: 12 Alignment: TGTKKTRTGTVWVTVTVTKWBTG-------- -----------VCTSTGKSCMKBCTRCYCTK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Reverse Complement Original Motif RAGKGMAGYAVHBASAVASDVACAMARRACA HAAAAHAAARMAAA RAGKGMAGYAVHBASAVASDHAAAMAAAAVMAAA Direction: Forward Position #: 21 Overlap #: 11 Alignment: RAGKGMAGYAVHBASAVASDVACAMARRACA--- --------------------HAAAAHAAARMAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 2 Reverse Complement Reverse Complement TTTYVTTTTYTTTHDSTVTSTBHVTKCTRCYCTK GTGTGTGTGTGTGT GTGTGTKTKTGTKTTYTTTHDSTVTSTBHVTKCTRCYCTK Direction: Forward Position #: 7 Overlap #: 8 Alignment: ------TTTYVTTTTYTTTHDSTVTSTBHVTKCTRCYCTK GTGTGTGTGTGTGT-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Original Motif GTGTGTKTKTGTKTTYTTTHDSTVTSTBHVTKCTRCYCTK CHHCHBTCCTSCYTCTGC GTGTGTKTKTGTKTTYTTTHDSTVTVBBHHBDCYDSCCTBTGC Direction: Forward Position #: 26 Overlap #: 15 Alignment: GTGTGTKTKTGTKTTYTTTHDSTVTSTBHVTKCTRCYCTK--- -------------------------CHHCHBTCCTSCYTCTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Original Motif GCABAGGSDMGDVDDVVVAVASDHAAAMAAYACAYARACACAC HCAGRRVACASAG GCABAGGSDMGDVDDVVVAVASDHAAAVARBAMACAVASACAC Direction: Forward Position #: 27 Overlap #: 13 Alignment: GCABAGGSDMGDVDDVVVAVASDHAAAMAAYACAYARACACAC --------------------------HCAGRRVACASAG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 93 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 TGGAGCACTGTGACAcCACAGTGg Original Motif Original Motif RAGKGMAGVRRGSRCASAGV TGGAGCACTGTGACAVCACAGTGG TGGAGBRCWGTGASAVCACAGTGG Direction: Backward Position #: 3 Overlap #: 20 Alignment: --RAGKGMAGVRRGSRCASAGV-- TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Reverse Complement Original Motif CCACTGTGVTSTCACWGKBCTCCA CACTGTGRTRTCACAGTGSWSCACT CCACTGTGVTGTCACAGTGCTSCACT Direction: Forward Position #: 2 Overlap #: 23 Alignment: CCACTGTGVTSTCACWGKBCTCCA-- -CACTGTGRTRTCACAGTGSWSCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Reverse Complement CCACTGTGVTGTCACAGTGCTSCACT GGYGCTGTCCATGGTGCTGAA GGYGCTGTCCAYKGTGCTGHMACAGTGCTSCACT Direction: Forward Position #: 9 Overlap #: 13 Alignment: --------CCACTGTGVTGTCACAGTGCTSCACT GGYGCTGTCCATGGTGCTGAA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif GGYGCTGTCCAYKGTGCTGHMACAGTGCTSCACT VDBHMAGGTCACCCTGACCY GGYGCTGTCCDBBSWGSTSAVMCWGWSCTSCACT Direction: Forward Position #: 10 Overlap #: 20 Alignment: GGYGCTGTCCAYKGTGCTGHMACAGTGCTSCACT ---------VDBHMAGGTCACCCTGACCY----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Reverse Complement Original Motif AGTGSAGSWCWGYVTSASCWSVBDGGACAGCKCC YDRCCASYAGRKGGCRSYV AGTGSAGSWCWBBRYCASCAGRKGGSACAGCKCC Direction: Forward Position #: 12 Overlap #: 19 Alignment: AGTGSAGSWCWGYVTSASCWSVBDGGACAGCKCC -----------YDRCCASYAGRKGGCRSYV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement AGTGSAGSWCWBBRYCASCAGRKGGSACAGCKCC BAGGYCABHBTGACCKHV AGTGSAGSWCHVGGYCABCDKGDSSBDSAGCKCC Direction: Forward Position #: 11 Overlap #: 18 Alignment: AGTGSAGSWCWBBRYCASCAGRKGGSACAGCKCC ----------BAGGYCABHBTGACCKHV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Reverse Complement AGTGSAGSWCHVGGYCABCDKGDSSBDSAGCKCC GCAGAKGSAGGABDGHDG AGTGSAGSWCHVGGYCABCDKSASVKGSAGSDBVGHDG Direction: Forward Position #: 21 Overlap #: 14 Alignment: AGTGSAGSWCHVGGYCABCDKGDSSBDSAGCKCC---- --------------------GCAGAKGSAGGABDGHDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Original Motif Reverse Complement AGTGSAGSWCHVGGYCABCDKSASVKGSAGSDBVGHDG GGAGCACTGTGACACCACA AGTGGAGCACTGTGACACCABVASVKGSAGSDBVGHDG Direction: Forward Position #: 4 Overlap #: 19 Alignment: AGTGSAGSWCHVGGYCABCDKSASVKGSAGSDBVGHDG ---GGAGCACTGTGACACCACA---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Reverse Complement Original Motif CHHCVBDSCTSCYBSTBBTGGTGTCACAGTGCTCCACT TTTTTTTKTTKTTTAATTHW TTTTTTTKTTKTTTHABBVWSCTSCYBSTBBTGGTGTCACAGTGCTCCACT Direction: Forward Position #: 14 Overlap #: 7 Alignment: -------------CHHCVBDSCTSCYBSTBBTGGTGTCACAGTGCTCCACT TTTTTTTKTTKTTTAATTHW------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Reverse Complement Reverse Complement AGTGGAGCACTGTGACACCABVASVKGSAGSWVVVTHAAARAARAAAAAAA ACTGTGGTGTCACART ACTGTRGTGKMRCASTGTGACACCABVASVKGSAGSWVVVTHAAARAARAAAAAAA Direction: Forward Position #: 6 Overlap #: 11 Alignment: -----AGTGGAGCACTGTGACACCABVASVKGSAGSWVVVTHAAARAARAAAAAAA ACTGTGGTGTCACART---------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 94 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 TFM11 Reverse Complement Original Motif WHAATTAAARAARAAAAAAA CAMACACACACAYDCACACA CAHAVWYAMAMAMRMAMAMAA Direction: Backward Position #: 2 Overlap #: 19 Alignment: -WHAATTAAARAARAAAAAAA CAMACACACACAYDCACACA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Reverse Complement CAHAVWYAMAMAMRMAMAMAA BTTHAAAAAAYAAAAAAR CABWTWVAAAAAHAMAAAAAA Direction: Forward Position #: 3 Overlap #: 18 Alignment: CAHAVWYAMAMAMRMAMAMAA --BTTHAAAAAAYAAAAAAR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif CABWTWVAAAAAHAMAAAAAA RAGKGMAGVRRGSRCASAGV CAVADDVMARMADRVAMAVARV Direction: Forward Position #: 3 Overlap #: 19 Alignment: CABWTWVAAAAAHAMAAAAAA- --RAGKGMAGVRRGSRCASAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Original Motif CAVADDVMARMADRVAMAVARV CACACACACACWCACACA CAHAVACAMACAHRCACAMARV Direction: Forward Position #: 3 Overlap #: 18 Alignment: CAVADDVMARMADRVAMAVARV --CACACACACACWCACACA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Original Motif Original Motif CAHAVACAMACAHRCACAMARV AAAAAAAAAAAAAT CAHAVACAMACAHRCAMAAAAAAAAAAAT Direction: Forward Position #: 16 Overlap #: 7 Alignment: CAHAVACAMACAHRCACAMARV------- ---------------AAAAAAAAAAAAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Original Motif Original Motif CAHAVACAMACAHRCAMAAAAAAAAAAAT HAAAAHAAARMAAA CAHAVACAMACAHRCAMAAAAAAAAAAAWAA Direction: Forward Position #: 18 Overlap #: 12 Alignment: CAHAVACAMACAHRCAMAAAAAAAAAAAT-- -----------------HAAAAHAAARMAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 33 Combined Motif Reverse Complement Original Motif TTWTTTTTTTTTTTYTGKDTGTRTGTVTDTG TTTAATGTYTTTWA TTWTTTTWWTKTYTTTDADTGTRTGTVTDTG Direction: Forward Position #: 5 Overlap #: 14 Alignment: TTWTTTTTTTTTTTYTGKDTGTRTGTVTDTG ----TTTAATGTYTTTWA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Reverse Complement Reverse Complement CAHAVACAMACAHTDAAAMAYAWWAAAAWAA GGAGCACTGTGACACCACA GGAGCACWGWGACACMAHAAAAMAYAWWAAAAWAA Direction: Forward Position #: 5 Overlap #: 15 Alignment: ----CAHAVACAMACAHTDAAAMAYAWWAAAAWAA GGAGCACTGTGACACCACA---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 45 Reverse Complement Original Motif TTWTTTTWWTKTYTTTTHTRGTGTCWCWGTGCTCC TAASTCTWTTTTAA TWABTYTWTTTTWWTTTHTRGTGTCWCWGTGCTCC Direction: Forward Position #: 1 Overlap #: 14 Alignment: TTWTTTTWWTKTYTTTTHTRGTGTCWCWGTGCTCC TAASTCTWTTTTAA--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Reverse Complement TWABTYTWTTTTWWTTTHTRGTGTCWCWGTGCTCC TGRCCTKTGHCCKAB TWABTYTWTTTTWWTKDCCKKTGYCHBWGTGCTCC Direction: Forward Position #: 15 Overlap #: 15 Alignment: TWABTYTWTTTTWWTTTHTRGTGTCWCWGTGCTCC --------------TGRCCTKTGHCCKAB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 06-19-2018 09:09:18 Runtime: 1079.09 seconds MOTIFSIM is written by Ngoc Tam L. 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