MOTIFSIM - MOTIF SIMilarity Detection Tool

Version 2.0

INPUT

Input Parameters
Number of files: 2
Number of top significant motifs: 10
Number of best matches: 10
Similarity cutoff >= 0.75
Output file type: All
Output file format: All

Input files and motif counts
File name Count of motifs Dataset number
W-ChIPMotifs_DM230.txt 11 1
RSAT_peak-motifs_DM230.txt 10 2

RESULTS

Top 10 Significant Motifs - Global Matching (Highest to Lowest)

Dataset #: 1 Motif ID: 1 Motif name: TFW1

Original motif     Consensus sequence: GTCGCG Reverse complement motif     Consensus sequence: CGCGAC

Best Matches for Top Significant Motif ID 1 (Highest to Lowest)

Dataset #: 2
Motif ID: 18
Motif name: sSGTCACGTGACSs
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0375102

Alignment:
SGGTCACGTGACCS
--GTCGCG------

Original motif     Consensus sequence: SGGTCACGTGACCS Reverse complement motif     Consensus sequence: SGGTCACGTGACCS


Dataset #: 2
Motif ID: 12
Motif name: csGCCCCGCCCCsc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.0539

Alignment:
HVGCCCCGCCCCBB
--GTCGCG------

Original motif     Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCVD


Dataset #: 2
Motif ID: 14
Motif name: cccGCCCCGCCCCsb
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0558733

Alignment:
BCCGCCCCGCCCCBB
-------CGCGAC--

Original motif     Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCGGB


Dataset #: 2
Motif ID: 16
Motif name: kcACCTGCAgc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.0980422

Alignment:
BCACCTGCABC
-----CGCGAC

Original motif     Consensus sequence: BCACCTGCABC Reverse complement motif     Consensus sequence: GBTGCAGGTGB


Dataset #: 2
Motif ID: 20
Motif name: dhACATTCTkh
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 4
Similarity score: 1.09467

Alignment:
HCAGAATGTHD--
-------GTCGCG

Original motif     Consensus sequence: DHACATTCTGH Reverse complement motif     Consensus sequence: HCAGAATGTHD


Dataset #: 1 Motif ID: 3 Motif name: TFW3

Original motif     Consensus sequence: CGGCYBCGCG Reverse complement motif     Consensus sequence: CGCGBMGCCG

Best Matches for Top Significant Motif ID 3 (Highest to Lowest)

Dataset #: 2
Motif ID: 12
Motif name: csGCCCCGCCCCsc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.0718771

Alignment:
HVGCCCCGCCCCBB
CGGCYBCGCG----

Original motif     Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCVD


Dataset #: 2
Motif ID: 14
Motif name: cccGCCCCGCCCCsb
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.0719604

Alignment:
BCCGCCCCGCCCCBB
-CGGCYBCGCG----

Original motif     Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCGGB


Dataset #: 2
Motif ID: 18
Motif name: sSGTCACGTGACSs
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0895189

Alignment:
SGGTCACGTGACCS
----CGCGBMGCCG

Original motif     Consensus sequence: SGGTCACGTGACCS Reverse complement motif     Consensus sequence: SGGTCACGTGACCS


Dataset #: 2
Motif ID: 16
Motif name: kcACCTGCAgc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 1.10343

Alignment:
BCACCTGCABC--
---CGCGBMGCCG

Original motif     Consensus sequence: BCACCTGCABC Reverse complement motif     Consensus sequence: GBTGCAGGTGB


Dataset #: 2
Motif ID: 15
Motif name: kCAGCCAATmr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 7
Similarity score: 1.57732

Alignment:
---DCAGCCAATVR
CGCGBMGCCG----

Original motif     Consensus sequence: DCAGCCAATVR Reverse complement motif     Consensus sequence: MBATTGGCTGH


Dataset #: 2 Motif ID: 17 Motif name: wwAAATAATAtw

Original motif     Consensus sequence: HDAAATAATADD Reverse complement motif     Consensus sequence: DDTATTATTTDH

Best Matches for Top Significant Motif ID 17 (Highest to Lowest)

Dataset #: 1
Motif ID: 7
Motif name: TFM1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 12
Similarity score: 0.0565705

Alignment:
ABAAAAAAWHAAAAARAW
------HDAAATAATADD

Original motif     Consensus sequence: WTKTTTTTHWTTTTTTBT Reverse complement motif     Consensus sequence: ABAAAAAAWHAAAAARAW


Dataset #: 1
Motif ID: 11
Motif name: TFM11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0575935

Alignment:
HDWVAAAHAAAAAMAAAMWWWHBWA
--HDAAATAATADD-----------

Original motif     Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif     Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH


Dataset #: 1
Motif ID: 10
Motif name: TFM13
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0712963

Alignment:
ATKAAWTTTTRMAABAHHTW
--------DDTATTATTTDH

Original motif     Consensus sequence: ATKAAWTTTTRMAABAHHTW Reverse complement motif     Consensus sequence: WAHHTVTTYKAAAAWTTRAT


Dataset #: 1
Motif ID: 8
Motif name: TFM3
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0733516

Alignment:
TWAAWTTVTGAAAAAHWW
------HDAAATAATADD

Original motif     Consensus sequence: WWHTTTTTCABAAWTTWA Reverse complement motif     Consensus sequence: TWAAWTTVTGAAAAAHWW


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 16
Number of overlap: 5
Similarity score: 3.59569

Alignment:
-------KKKAGGDGGAKKMGBBGKMG
DDTATTATTTDH---------------

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 2 Motif ID: 13 Motif name: tkAAATAATAtw

Original motif     Consensus sequence: HDAAATAATAHW Reverse complement motif     Consensus sequence: WHTATTATTTDH

Best Matches for Top Significant Motif ID 13 (Highest to Lowest)

Dataset #: 1
Motif ID: 11
Motif name: TFM11
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0590505

Alignment:
TWVHWWWYTTTYTTTTTHTTTVWBH
-----------WHTATTATTTDH--

Original motif     Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif     Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH


Dataset #: 1
Motif ID: 7
Motif name: TFM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0637702

Alignment:
WTKTTTTTHWTTTTTTBT
WHTATTATTTDH------

Original motif     Consensus sequence: WTKTTTTTHWTTTTTTBT Reverse complement motif     Consensus sequence: ABAAAAAAWHAAAAARAW


Dataset #: 1
Motif ID: 10
Motif name: TFM13
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 12
Similarity score: 0.0704475

Alignment:
ATKAAWTTTTRMAABAHHTW
--------WHTATTATTTDH

Original motif     Consensus sequence: ATKAAWTTTTRMAABAHHTW Reverse complement motif     Consensus sequence: WAHHTVTTYKAAAAWTTRAT


Dataset #: 1
Motif ID: 8
Motif name: TFM3
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0763819

Alignment:
TWAAWTTVTGAAAAAHWW
------HDAAATAATAHW

Original motif     Consensus sequence: WWHTTTTTCABAAWTTWA Reverse complement motif     Consensus sequence: TWAAWTTVTGAAAAAHWW


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 16
Number of overlap: 5
Similarity score: 3.59273

Alignment:
-------KKKAGGDGGAKKMGBBGKMG
WHTATTATTTDH---------------

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 1 Motif ID: 2 Motif name: TFW2

Original motif     Consensus sequence: SCGCGCGG Reverse complement motif     Consensus sequence: CCGCGCGS

Best Matches for Top Significant Motif ID 2 (Highest to Lowest)

Dataset #: 2
Motif ID: 12
Motif name: csGCCCCGCCCCsc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0456233

Alignment:
BBGGGGCGGGGCVD
-SCGCGCGG-----

Original motif     Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCVD


Dataset #: 2
Motif ID: 14
Motif name: cccGCCCCGCCCCsb
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.045686

Alignment:
BCCGCCCCGCCCCBB
------CCGCGCGS-

Original motif     Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCGGB


Dataset #: 2
Motif ID: 18
Motif name: sSGTCACGTGACSs
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0988223

Alignment:
SGGTCACGTGACCS
---SCGCGCGG---

Original motif     Consensus sequence: SGGTCACGTGACCS Reverse complement motif     Consensus sequence: SGGTCACGTGACCS


Dataset #: 2
Motif ID: 16
Motif name: kcACCTGCAgc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 4
Similarity score: 2.08456

Alignment:
----GBTGCAGGTGB
SCGCGCGG-------

Original motif     Consensus sequence: BCACCTGCABC Reverse complement motif     Consensus sequence: GBTGCAGGTGB


Dataset #: 2
Motif ID: 15
Motif name: kCAGCCAATmr
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 4
Similarity score: 2.0901

Alignment:
MBATTGGCTGH----
-------CCGCGCGS

Original motif     Consensus sequence: DCAGCCAATVR Reverse complement motif     Consensus sequence: MBATTGGCTGH


Dataset #: 2 Motif ID: 21 Motif name: wbgTAAATAww

Original motif     Consensus sequence: DBGTAAATAHD Reverse complement motif     Consensus sequence: DHTATTTACBD

Best Matches for Top Significant Motif ID 21 (Highest to Lowest)

Dataset #: 1
Motif ID: 11
Motif name: TFM11
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 15
Number of overlap: 11
Similarity score: 0.0192768

Alignment:
TWVHWWWYTTTYTTTTTHTTTVWBH
--------------DHTATTTACBD

Original motif     Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif     Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH


Dataset #: 1
Motif ID: 7
Motif name: TFM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0283217

Alignment:
WTKTTTTTHWTTTTTTBT
DHTATTTACBD-------

Original motif     Consensus sequence: WTKTTTTTHWTTTTTTBT Reverse complement motif     Consensus sequence: ABAAAAAAWHAAAAARAW


Dataset #: 1
Motif ID: 8
Motif name: TFM3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0308097

Alignment:
WWHTTTTTCABAAWTTWA
------DHTATTTACBD-

Original motif     Consensus sequence: WWHTTTTTCABAAWTTWA Reverse complement motif     Consensus sequence: TWAAWTTVTGAAAAAHWW


Dataset #: 1
Motif ID: 10
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0333874

Alignment:
ATKAAWTTTTRMAABAHHTW
-------DBGTAAATAHD--

Original motif     Consensus sequence: ATKAAWTTTTRMAABAHHTW Reverse complement motif     Consensus sequence: WAHHTVTTYKAAAAWTTRAT


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 14
Number of overlap: 7
Similarity score: 2.0544

Alignment:
----KKKAGGDGGAKKMGBBGKMG
DHTATTTACBD-------------

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 1
Motif ID: 6
Motif name: TFM2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 12
Number of overlap: 5
Similarity score: 3.05714

Alignment:
------CHCCBCCKMCTCCKCM
DHTATTTACBD-----------

Original motif     Consensus sequence: RGRGGAGRRGGHGGDG Reverse complement motif     Consensus sequence: CHCCBCCKMCTCCKCM


Dataset #: 1
Motif ID: 4
Motif name: TFF1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 4
Similarity score: 3.54896

Alignment:
-------GCVGCGGCBCCG
DHTATTTACBD--------

Original motif     Consensus sequence: CGGVGCCGCVGC Reverse complement motif     Consensus sequence: GCVGCGGCBCCG


Dataset #: 2 Motif ID: 19 Motif name: wsTACwGTAsw

Original motif     Consensus sequence: HVTACWGTABD Reverse complement motif     Consensus sequence: DBTACWGTAVH

Best Matches for Top Significant Motif ID 19 (Highest to Lowest)

Dataset #: 1
Motif ID: 8
Motif name: TFM3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0413797

Alignment:
WWHTTTTTCABAAWTTWA
---DBTACWGTAVH----

Original motif     Consensus sequence: WWHTTTTTCABAAWTTWA Reverse complement motif     Consensus sequence: TWAAWTTVTGAAAAAHWW


Dataset #: 1
Motif ID: 10
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0445707

Alignment:
WAHHTVTTYKAAAAWTTRAT
-------HVTACWGTABD--

Original motif     Consensus sequence: ATKAAWTTTTRMAABAHHTW Reverse complement motif     Consensus sequence: WAHHTVTTYKAAAAWTTRAT


Dataset #: 1
Motif ID: 11
Motif name: TFM11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0472742

Alignment:
HDWVAAAHAAAAAMAAAMWWWHBWA
---DBTACWGTAVH-----------

Original motif     Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif     Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH


Dataset #: 1
Motif ID: 7
Motif name: TFM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 9
Similarity score: 1.04742

Alignment:
WTKTTTTTHWTTTTTTBT--
---------DBTACWGTAVH

Original motif     Consensus sequence: WTKTTTTTHWTTTTTTBT Reverse complement motif     Consensus sequence: ABAAAAAAWHAAAAARAW


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 15
Number of overlap: 6
Similarity score: 2.54736

Alignment:
-----CYYCBBCYYYTCCHCCTYYY
DBTACWGTAVH--------------

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 1
Motif ID: 5
Motif name: TFF11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 5
Similarity score: 3.04599

Alignment:
GGMGGRGGCGGVGC------
---------DBTACWGTAVH

Original motif     Consensus sequence: GGMGGRGGCGGVGC Reverse complement motif     Consensus sequence: GCVCCGCCMCCYCC


Dataset #: 1
Motif ID: 6
Motif name: TFM2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 12
Number of overlap: 5
Similarity score: 3.04861

Alignment:
RGRGGAGRRGGHGGDG------
-----------DBTACWGTAVH

Original motif     Consensus sequence: RGRGGAGRRGGHGGDG Reverse complement motif     Consensus sequence: CHCCBCCKMCTCCKCM


Dataset #: 2 Motif ID: 16 Motif name: kcACCTGCAgc

Original motif     Consensus sequence: BCACCTGCABC Reverse complement motif     Consensus sequence: GBTGCAGGTGB

Best Matches for Top Significant Motif ID 16 (Highest to Lowest)

Dataset #: 1
Motif ID: 5
Motif name: TFF11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0312321

Alignment:
GGMGGRGGCGGVGC
GBTGCAGGTGB---

Original motif     Consensus sequence: GGMGGRGGCGGVGC Reverse complement motif     Consensus sequence: GCVCCGCCMCCYCC


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 11
Similarity score: 0.0444938

Alignment:
KKKAGGDGGAKKMGBBGKMG
----GBTGCAGGTGB-----

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 1
Motif ID: 6
Motif name: TFM2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 10
Similarity score: 0.538471

Alignment:
-RGRGGAGRRGGHGGDG
GBTGCAGGTGB------

Original motif     Consensus sequence: RGRGGAGRRGGHGGDG Reverse complement motif     Consensus sequence: CHCCBCCKMCTCCKCM


Dataset #: 1
Motif ID: 4
Motif name: TFF1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 1.54364

Alignment:
GCVGCGGCBCCG---
----BCACCTGCABC

Original motif     Consensus sequence: CGGVGCCGCVGC Reverse complement motif     Consensus sequence: GCVGCGGCBCCG


Dataset #: 1
Motif ID: 3
Motif name: TFW3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 1.5466

Alignment:
---CGGCYBCGCG
GBTGCAGGTGB--

Original motif     Consensus sequence: CGGCYBCGCG Reverse complement motif     Consensus sequence: CGCGBMGCCG


Dataset #: 1
Motif ID: 1
Motif name: TFW1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 2.54121

Alignment:
CGCGAC-----
BCACCTGCABC

Original motif     Consensus sequence: GTCGCG Reverse complement motif     Consensus sequence: CGCGAC


Dataset #: 1
Motif ID: 2
Motif name: TFW2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 4
Similarity score: 3.53211

Alignment:
CCGCGCGS-------
----BCACCTGCABC

Original motif     Consensus sequence: SCGCGCGG Reverse complement motif     Consensus sequence: CCGCGCGS


Dataset #: 1
Motif ID: 11
Motif name: TFM11
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 22
Number of overlap: 4
Similarity score: 3.53789

Alignment:
-------TWVHWWWYTTTYTTTTTHTTTVWBH
GBTGCAGGTGB---------------------

Original motif     Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif     Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH


Dataset #: 1 Motif ID: 4 Motif name: TFF1

Original motif     Consensus sequence: CGGVGCCGCVGC Reverse complement motif     Consensus sequence: GCVGCGGCBCCG

Best Matches for Top Significant Motif ID 4 (Highest to Lowest)

Dataset #: 2
Motif ID: 12
Motif name: csGCCCCGCCCCsc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0542674

Alignment:
HVGCCCCGCCCCBB
CGGVGCCGCVGC--

Original motif     Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCVD


Dataset #: 2
Motif ID: 14
Motif name: cccGCCCCGCCCCsb
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.0548371

Alignment:
BCCGCCCCGCCCCBB
---GCVGCGGCBCCG

Original motif     Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCGGB


Dataset #: 2
Motif ID: 18
Motif name: sSGTCACGTGACSs
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0777862

Alignment:
SGGTCACGTGACCS
--GCVGCGGCBCCG

Original motif     Consensus sequence: SGGTCACGTGACCS Reverse complement motif     Consensus sequence: SGGTCACGTGACCS


Dataset #: 2
Motif ID: 16
Motif name: kcACCTGCAgc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 2.08028

Alignment:
----GBTGCAGGTGB
CGGVGCCGCVGC---

Original motif     Consensus sequence: BCACCTGCABC Reverse complement motif     Consensus sequence: GBTGCAGGTGB


Dataset #: 2
Motif ID: 15
Motif name: kCAGCCAATmr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 5
Similarity score: 3.54126

Alignment:
-------DCAGCCAATVR
CGGVGCCGCVGC------

Original motif     Consensus sequence: DCAGCCAATVR Reverse complement motif     Consensus sequence: MBATTGGCTGH


Dataset #: 2
Motif ID: 20
Motif name: dhACATTCTkh
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 4
Similarity score: 4.07107

Alignment:
HCAGAATGTHD--------
-------GCVGCGGCBCCG

Original motif     Consensus sequence: DHACATTCTGH Reverse complement motif     Consensus sequence: HCAGAATGTHD


Dataset #: 2
Motif ID: 21
Motif name: wbgTAAATAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 4
Similarity score: 4.0742

Alignment:
DHTATTTACBD--------
-------GCVGCGGCBCCG

Original motif     Consensus sequence: DBGTAAATAHD Reverse complement motif     Consensus sequence: DHTATTTACBD


Dataset #: 2 Motif ID: 20 Motif name: dhACATTCTkh

Original motif     Consensus sequence: DHACATTCTGH Reverse complement motif     Consensus sequence: HCAGAATGTHD

Best Matches for Top Significant Motif ID 20 (Highest to Lowest)

Dataset #: 1
Motif ID: 8
Motif name: TFM3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 11
Similarity score: 0.00522383

Alignment:
WWHTTTTTCABAAWTTWA
HCAGAATGTHD-------

Original motif     Consensus sequence: WWHTTTTTCABAAWTTWA Reverse complement motif     Consensus sequence: TWAAWTTVTGAAAAAHWW


Dataset #: 1
Motif ID: 11
Motif name: TFM11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 11
Number of overlap: 11
Similarity score: 0.014258

Alignment:
HDWVAAAHAAAAAMAAAMWWWHBWA
----HCAGAATGTHD----------

Original motif     Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif     Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH


Dataset #: 1
Motif ID: 10
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 11
Similarity score: 0.0192045

Alignment:
ATKAAWTTTTRMAABAHHTW
-DHACATTCTGH--------

Original motif     Consensus sequence: ATKAAWTTTTRMAABAHHTW Reverse complement motif     Consensus sequence: WAHHTVTTYKAAAAWTTRAT


Dataset #: 1
Motif ID: 7
Motif name: TFM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 10
Similarity score: 0.519904

Alignment:
ABAAAAAAWHAAAAARAW-
--------HCAGAATGTHD

Original motif     Consensus sequence: WTKTTTTTHWTTTTTTBT Reverse complement motif     Consensus sequence: ABAAAAAAWHAAAAARAW


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 17
Number of overlap: 4
Similarity score: 3.5

Alignment:
-------CYYCBBCYYYTCCHCCTYYY
DHACATTCTGH----------------

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 1
Motif ID: 4
Motif name: TFF1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 4
Similarity score: 3.51958

Alignment:
-------GCVGCGGCBCCG
HCAGAATGTHD--------

Original motif     Consensus sequence: CGGVGCCGCVGC Reverse complement motif     Consensus sequence: GCVGCGGCBCCG


Dataset #: 1
Motif ID: 1
Motif name: TFW1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 4
Similarity score: 3.52299

Alignment:
-------CGCGAC
DHACATTCTGH--

Original motif     Consensus sequence: GTCGCG Reverse complement motif     Consensus sequence: CGCGAC


Dataset #: 1
Motif ID: 5
Motif name: TFF11
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 11
Number of overlap: 4
Similarity score: 3.52554

Alignment:
-------GCVCCGCCMCCYCC
DHACATTCTGH----------

Original motif     Consensus sequence: GGMGGRGGCGGVGC Reverse complement motif     Consensus sequence: GCVCCGCCMCCYCC


Results created by MOTIFSIM on 09-23-2015 11:41:19
Runtime: 26.9027 seconds.

MOTIFSIM is written by Ngoc Tam L. Tran
Motif logo generated by weblogo