**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.0 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 2 Number of top significant motifs: 10 Number of best matches: 10 Similarity cutoff: >= 0.75 Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # PScanChIP_DM05.txt 16 1 RSAT_peak-motifs_DM05.txt 17 2 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ****************************************************************** Top 10 Significant Motifs - Global Matching (Highest to Lowest) ****************************************************************** Dataset #: 1 Motif ID: 5 Motif name: ZEB1 Consensus sequence (original motif): CACCTD Consensus sequence (reverse complement motif): HAGGTG *************************************************************** Best Matches for Top Significant Motif ID 5 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 21 AmTGTGACACCACAGT Original Motif Original Motif Backward 4 6 0.0349782 Consensus sequence (original motif): AMTGTGACACCACAGT Consensus sequence (reverse complement motif): ACTGTGGTGTCACART Alignment: AMTGTGACACCACAGT -------CACCTD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 TgTGgTGTCACAGTGCTCC Reverse Complement Original Motif Forward 2 6 0.0362768 Consensus sequence (original motif): TGTGGTGTCACAGTGCTCC Consensus sequence (reverse complement motif): GGAGCACTGTGACACCACA Alignment: TGTGGTGTCACAGTGCTCC -HAGGTG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 27 AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif Forward 12 6 0.0409613 Consensus sequence (original motif): AGTGCTCCACTGTGGTGTCACAGT Consensus sequence (reverse complement motif): ACTGTGACACCACAGTGGAGCACT Alignment: AGTGCTCCACTGTGGTGTCACAGT -----------HAGGTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 33 srACyCCGAyr Reverse Complement Reverse Complement Forward 3 6 0.0426002 Consensus sequence (original motif): SRACYCCGAYR Consensus sequence (reverse complement motif): KKTCGGKGTKS Alignment: KKTCGGKGTKS --HAGGTG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 23 TGGAGCACTGTGACAcCACAGTGg Original Motif Original Motif Backward 6 6 0.0496179 Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA Alignment: TGGAGCACTGTGACAVCACAGTGG -------------CACCTD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 26 CAcCACAGTGGAGCAct Reverse Complement Reverse Complement Backward 1 6 0.0538743 Consensus sequence (original motif): CAHCACAGTGGAGCACT Consensus sequence (reverse complement motif): AGTGCTCCACTGTGDTG Alignment: AGTGCTCCACTGTGDTG -----------HAGGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 19 atactttggc Original Motif Original Motif Forward 2 6 0.0553034 Consensus sequence (original motif): ATACTTTGGC Consensus sequence (reverse complement motif): GCCAAAGTAT Alignment: ATACTTTGGC -CACCTD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement Forward 19 6 0.0564649 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: AGTGSWSCACTGTGAMAMCACAGTG ------------------CACCTD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 24 ssCCCCGCSssk Original Motif Original Motif Backward 2 6 0.0571854 Consensus sequence (original motif): SBCCCCGCCSBB Consensus sequence (reverse complement motif): BBSGGCGGGGBS Alignment: SBCCCCGCCSBB -----CACCTD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 20 CagTGCTCCACTGTGgT Reverse Complement Reverse Complement Backward 8 6 0.0594701 Consensus sequence (original motif): CAGTGCTCCACTGTGBT Consensus sequence (reverse complement motif): ABCACAGTGGAGCACTG Alignment: ABCACAGTGGAGCACTG ----HAGGTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 6 Motif name: Mycn Consensus sequence (original motif): HSCACGTGGC Consensus sequence (reverse complement motif): GCCACGTGSD *************************************************************** Best Matches for Top Significant Motif ID 6 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 18 sscCCCGCGcs Reverse Complement Original Motif Backward 1 10 0.0654819 Consensus sequence (original motif): BSCCCCGCGBS Consensus sequence (reverse complement motif): SBCGCGGGGSB Alignment: BSCCCCGCGBS -GCCACGTGSD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 24 ssCCCCGCSssk Original Motif Reverse Complement Forward 2 10 0.0704988 Consensus sequence (original motif): SBCCCCGCCSBB Consensus sequence (reverse complement motif): BBSGGCGGGGBS Alignment: BBSGGCGGGGBS -HSCACGTGGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement Backward 10 10 0.0883224 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: AGTGSWSCACTGTGAMAMCACAGTG ------GCCACGTGSD--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 20 CagTGCTCCACTGTGgT Reverse Complement Reverse Complement Backward 7 10 0.0943014 Consensus sequence (original motif): CAGTGCTCCACTGTGBT Consensus sequence (reverse complement motif): ABCACAGTGGAGCACTG Alignment: ABCACAGTGGAGCACTG -GCCACGTGSD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 27 AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Reverse Complement Backward 6 10 0.0949359 Consensus sequence (original motif): AGTGCTCCACTGTGGTGTCACAGT Consensus sequence (reverse complement motif): ACTGTGACACCACAGTGGAGCACT Alignment: ACTGTGACACCACAGTGGAGCACT ---------GCCACGTGSD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 23 TGGAGCACTGTGACAcCACAGTGg Original Motif Original Motif Backward 1 10 0.0955115 Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA Alignment: TGGAGCACTGTGACAVCACAGTGG --------------HSCACGTGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 26 CAcCACAGTGGAGCAct Reverse Complement Original Motif Forward 3 10 0.0959628 Consensus sequence (original motif): CAHCACAGTGGAGCACT Consensus sequence (reverse complement motif): AGTGCTCCACTGTGDTG Alignment: CAHCACAGTGGAGCACT --GCCACGTGSD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 32 gCGCGCsCgsG Original Motif Original Motif Backward 1 10 0.0989932 Consensus sequence (original motif): GCGCGCSCGCG Consensus sequence (reverse complement motif): CGCGSGCGCGC Alignment: GCGCGCSCGCG -HSCACGTGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 TgTGgTGTCACAGTGCTCC Reverse Complement Reverse Complement Forward 4 10 0.0991692 Consensus sequence (original motif): TGTGGTGTCACAGTGCTCC Consensus sequence (reverse complement motif): GGAGCACTGTGACACCACA Alignment: GGAGCACTGTGACACCACA ---GCCACGTGSD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 28 ssGCkTGCssk Original Motif Reverse Complement Forward 1 10 0.101333 Consensus sequence (original motif): SSGCKTGCSSK Consensus sequence (reverse complement motif): YSSGCAYGCSS Alignment: YSSGCAYGCSS HSCACGTGGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 8 Motif name: Myc Consensus sequence (original motif): VGCACGTGGH Consensus sequence (reverse complement motif): DCCACGTGCV *************************************************************** Best Matches for Top Significant Motif ID 8 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 18 sscCCCGCGcs Reverse Complement Original Motif Backward 1 10 0.064853 Consensus sequence (original motif): BSCCCCGCGBS Consensus sequence (reverse complement motif): SBCGCGGGGSB Alignment: BSCCCCGCGBS -DCCACGTGCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 24 ssCCCCGCSssk Reverse Complement Original Motif Backward 2 10 0.0728588 Consensus sequence (original motif): SBCCCCGCCSBB Consensus sequence (reverse complement motif): BBSGGCGGGGBS Alignment: SBCCCCGCCSBB -DCCACGTGCV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Original Motif Backward 6 10 0.0888909 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: CACTGTGRTRTCACAGTGSWSCACT ----------DCCACGTGCV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 20 CagTGCTCCACTGTGgT Reverse Complement Reverse Complement Backward 7 10 0.0955234 Consensus sequence (original motif): CAGTGCTCCACTGTGBT Consensus sequence (reverse complement motif): ABCACAGTGGAGCACTG Alignment: ABCACAGTGGAGCACTG -DCCACGTGCV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 23 TGGAGCACTGTGACAcCACAGTGg Reverse Complement Original Motif Backward 11 10 0.0971125 Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA Alignment: TGGAGCACTGTGACAVCACAGTGG ----DCCACGTGCV---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 25 wwCCAmAGTCmt Original Motif Reverse Complement Forward 2 10 0.0974038 Consensus sequence (original motif): DDCCAMAGTCHB Consensus sequence (reverse complement motif): VDGACTRTGGDD Alignment: VDGACTRTGGDD -VGCACGTGGH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 26 CAcCACAGTGGAGCAct Reverse Complement Original Motif Forward 3 10 0.0979703 Consensus sequence (original motif): CAHCACAGTGGAGCACT Consensus sequence (reverse complement motif): AGTGCTCCACTGTGDTG Alignment: CAHCACAGTGGAGCACT --DCCACGTGCV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 27 AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Reverse Complement Backward 6 10 0.0980018 Consensus sequence (original motif): AGTGCTCCACTGTGGTGTCACAGT Consensus sequence (reverse complement motif): ACTGTGACACCACAGTGGAGCACT Alignment: ACTGTGACACCACAGTGGAGCACT ---------DCCACGTGCV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 32 gCGCGCsCgsG Original Motif Reverse Complement Backward 2 10 0.0989125 Consensus sequence (original motif): GCGCGCSCGCG Consensus sequence (reverse complement motif): CGCGSGCGCGC Alignment: CGCGSGCGCGC VGCACGTGGH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 TgTGgTGTCACAGTGCTCC Reverse Complement Reverse Complement Backward 7 10 0.0993196 Consensus sequence (original motif): TGTGGTGTCACAGTGCTCC Consensus sequence (reverse complement motif): GGAGCACTGTGACACCACA Alignment: GGAGCACTGTGACACCACA ---DCCACGTGCV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 11 Motif name: NR4A2 Consensus sequence (original motif): AAGGTCAC Consensus sequence (reverse complement motif): GTGACCTT *************************************************************** Best Matches for Top Significant Motif ID 11 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Original Motif Original Motif Forward 7 8 0.0557243 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: CACTGTGRTRTCACAGTGSWSCACT ------AAGGTCAC----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 23 TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement Forward 8 8 0.060729 Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA Alignment: CCACTGTGVTGTCACAGTGCTCCA -------AAGGTCAC--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 21 AmTGTGACACCACAGT Original Motif Reverse Complement Backward 4 8 0.0645146 Consensus sequence (original motif): AMTGTGACACCACAGT Consensus sequence (reverse complement motif): ACTGTGGTGTCACART Alignment: ACTGTGGTGTCACART -----AAGGTCAC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 TgTGgTGTCACAGTGCTCC Original Motif Original Motif Forward 4 8 0.0695512 Consensus sequence (original motif): TGTGGTGTCACAGTGCTCC Consensus sequence (reverse complement motif): GGAGCACTGTGACACCACA Alignment: TGTGGTGTCACAGTGCTCC ---AAGGTCAC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 27 AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif Backward 4 8 0.0709831 Consensus sequence (original motif): AGTGCTCCACTGTGGTGTCACAGT Consensus sequence (reverse complement motif): ACTGTGACACCACAGTGGAGCACT Alignment: AGTGCTCCACTGTGGTGTCACAGT -------------AAGGTCAC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 29 cCGCGGrCACG Original Motif Original Motif Forward 3 8 0.0772292 Consensus sequence (original motif): CCGCGGRCACG Consensus sequence (reverse complement motif): CGTGKCCGCGG Alignment: CCGCGGRCACG --AAGGTCAC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 25 wwCCAmAGTCmt Original Motif Original Motif Forward 5 8 0.0788401 Consensus sequence (original motif): DDCCAMAGTCHB Consensus sequence (reverse complement motif): VDGACTRTGGDD Alignment: DDCCAMAGTCHB ----AAGGTCAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 20 CagTGCTCCACTGTGgT Reverse Complement Reverse Complement Forward 10 8 0.0864039 Consensus sequence (original motif): CAGTGCTCCACTGTGBT Consensus sequence (reverse complement motif): ABCACAGTGGAGCACTG Alignment: ABCACAGTGGAGCACTG ---------GTGACCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 28 ssGCkTGCssk Reverse Complement Original Motif Forward 5 7 0.568556 Consensus sequence (original motif): SSGCKTGCSSK Consensus sequence (reverse complement motif): YSSGCAYGCSS Alignment: SSGCKTGCSSK- ----GTGACCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 26 CAcCACAGTGGAGCAct Reverse Complement Original Motif Forward 11 7 0.581814 Consensus sequence (original motif): CAHCACAGTGGAGCACT Consensus sequence (reverse complement motif): AGTGCTCCACTGTGDTG Alignment: CAHCACAGTGGAGCACT- ----------GTGACCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 25 Motif name: wwCCAmAGTCmt Consensus sequence (original motif): DDCCAMAGTCHB Consensus sequence (reverse complement motif): VDGACTRTGGDD *************************************************************** Best Matches for Top Significant Motif ID 25 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 HNF4A Original Motif Original Motif Forward 2 12 0.032442 Consensus sequence (original motif): RGGBCAAAGKYCA Consensus sequence (reverse complement motif): TGMYCTTTGBCCK Alignment: RGGBCAAAGKYCA -DDCCAMAGTCHB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Original Motif Reverse Complement Forward 4 12 0.0391228 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: GGYGCTGTCCATGGTGCTGAA ---DDCCAMAGTCHB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Original Motif Original Motif Backward 9 12 0.0407304 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: VDBHMAGGTCACCCTGACCY DDCCAMAGTCHB-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 NR1H2RXRA Original Motif Original Motif Backward 2 12 0.0463384 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: AAAGGTCAAAGGTCAAC ----DDCCAMAGTCHB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 PPARGRXRA Original Motif Reverse Complement Forward 3 12 0.0480406 Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB Alignment: TGRCCTKTGHCCKAB --DDCCAMAGTCHB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 NR2F1 Reverse Complement Original Motif Forward 3 12 0.0506507 Consensus sequence (original motif): TGAMCTTTGMMCYT Consensus sequence (reverse complement motif): AKGYYCAAAGRTCA Alignment: TGAMCTTTGMMCYT --VDGACTRTGGDD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 16 CTCF Original Motif Reverse Complement Backward 8 12 0.0523578 Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM Alignment: BMSMGCCYMCTKSTGGMHM DDCCAMAGTCHB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 ESR2 Original Motif Original Motif Backward 4 12 0.0576723 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV Alignment: VHRGGTCABDBTGMCCTB ---DDCCAMAGTCHB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 Esrrb Original Motif Original Motif Forward 2 11 0.525631 Consensus sequence (original motif): VBBYCAAGGTCA Consensus sequence (reverse complement motif): TGACCTTGMBBB Alignment: VBBYCAAGGTCA- -DDCCAMAGTCHB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 Myc Reverse Complement Original Motif Backward 1 10 1.0578 Consensus sequence (original motif): VGCACGTGGH Consensus sequence (reverse complement motif): DCCACGTGCV Alignment: --VGCACGTGGH VDGACTRTGGDD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 28 Motif name: ssGCkTGCssk Consensus sequence (original motif): SSGCKTGCSSK Consensus sequence (reverse complement motif): YSSGCAYGCSS *************************************************************** Best Matches for Top Significant Motif ID 28 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 16 CTCF Original Motif Original Motif Forward 8 11 0.0349439 Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM Alignment: YDRCCASYAGRKGGCRSYV -------SSGCKTGCSSK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 Esrrb Reverse Complement Original Motif Forward 2 11 0.0358701 Consensus sequence (original motif): VBBYCAAGGTCA Consensus sequence (reverse complement motif): TGACCTTGMBBB Alignment: VBBYCAAGGTCA -YSSGCAYGCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 ESR2 Reverse Complement Original Motif Backward 3 11 0.0379074 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV Alignment: VHRGGTCABDBTGMCCTB -----YSSGCAYGCSS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Reverse Complement Original Motif Backward 10 11 0.0409322 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: TTCAGCACCATGGACAGCKCC -YSSGCAYGCSS--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 PPARGRXRA Reverse Complement Original Motif Forward 3 11 0.041419 Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB Alignment: BTRGGDCARAGGKCA --YSSGCAYGCSS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 HNF4A Reverse Complement Original Motif Forward 3 11 0.0437981 Consensus sequence (original motif): RGGBCAAAGKYCA Consensus sequence (reverse complement motif): TGMYCTTTGBCCK Alignment: RGGBCAAAGKYCA --YSSGCAYGCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 6 Mycn Original Motif Reverse Complement Forward 1 10 0.53887 Consensus sequence (original motif): HSCACGTGGC Consensus sequence (reverse complement motif): GCCACGTGSD Alignment: GCCACGTGSD- SSGCKTGCSSK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 Myc Original Motif Reverse Complement Forward 1 10 0.542915 Consensus sequence (original motif): VGCACGTGGH Consensus sequence (reverse complement motif): DCCACGTGCV Alignment: DCCACGTGCV- SSGCKTGCSSK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 NR1H2RXRA Reverse Complement Original Motif Backward 10 8 1.53583 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: ---AAAGGTCAAAGGTCAAC YSSGCAYGCSS--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 15 Tcfcp2l1 Reverse Complement Original Motif Backward 7 8 1.53704 Consensus sequence (original motif): CCAGYYHVADCCRG Consensus sequence (reverse complement motif): CKGGDTBDMMCTGG Alignment: ---CCAGYYHVADCCRG YSSGCAYGCSS------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 24 Motif name: ssCCCCGCSssk Consensus sequence (original motif): SBCCCCGCCSBB Consensus sequence (reverse complement motif): BBSGGCGGGGBS *************************************************************** Best Matches for Top Significant Motif ID 24 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Reverse Complement Reverse Complement Backward 2 12 0.063076 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: MGGTCAGGGTGACCTRDBHV -------BBSGGCGGGGBS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 16 CTCF Reverse Complement Original Motif Forward 2 12 0.0642087 Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM Alignment: YDRCCASYAGRKGGCRSYV -BBSGGCGGGGBS------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 PPARGRXRA Original Motif Reverse Complement Backward 3 12 0.0671548 Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB Alignment: TGRCCTKTGHCCKAB -SBCCCCGCCSBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 ESR2 Original Motif Reverse Complement Forward 2 12 0.0734481 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV Alignment: BAGGYCABHBTGACCKHV -SBCCCCGCCSBB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Reverse Complement Original Motif Backward 10 12 0.0751084 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: TTCAGCACCATGGACAGCKCC BBSGGCGGGGBS--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 Esrrb Reverse Complement Original Motif Forward 2 11 0.571364 Consensus sequence (original motif): VBBYCAAGGTCA Consensus sequence (reverse complement motif): TGACCTTGMBBB Alignment: VBBYCAAGGTCA- -BBSGGCGGGGBS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 HNF4A Original Motif Reverse Complement Backward 3 11 0.573202 Consensus sequence (original motif): RGGBCAAAGKYCA Consensus sequence (reverse complement motif): TGMYCTTTGBCCK Alignment: -TGMYCTTTGBCCK SBCCCCGCCSBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 15 Tcfcp2l1 Reverse Complement Reverse Complement Forward 6 9 1.54913 Consensus sequence (original motif): CCAGYYHVADCCRG Consensus sequence (reverse complement motif): CKGGDTBDMMCTGG Alignment: CKGGDTBDMMCTGG--- -----BBSGGCGGGGBS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 6 Mycn Original Motif Original Motif Backward 2 9 1.57507 Consensus sequence (original motif): HSCACGTGGC Consensus sequence (reverse complement motif): GCCACGTGSD Alignment: ---HSCACGTGGC SBCCCCGCCSBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 Myc Reverse Complement Original Motif Forward 2 9 1.57737 Consensus sequence (original motif): VGCACGTGGH Consensus sequence (reverse complement motif): DCCACGTGCV Alignment: VGCACGTGGH--- -BBSGGCGGGGBS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 29 Motif name: cCGCGGrCACG Consensus sequence (original motif): CCGCGGRCACG Consensus sequence (reverse complement motif): CGTGKCCGCGG *************************************************************** Best Matches for Top Significant Motif ID 29 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Original Motif Original Motif Backward 4 11 0.0484441 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: TTCAGCACCATGGACAGCKCC -------CCGCGGRCACG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Reverse Complement Reverse Complement Backward 3 11 0.0486581 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: MGGTCAGGGTGACCTRDBHV -------CGTGKCCGCGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 16 CTCF Original Motif Original Motif Forward 8 11 0.0588663 Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM Alignment: YDRCCASYAGRKGGCRSYV -------CCGCGGRCACG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 PPARGRXRA Reverse Complement Reverse Complement Backward 2 11 0.0629476 Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB Alignment: TGRCCTKTGHCCKAB ---CGTGKCCGCGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 ESR2 Reverse Complement Reverse Complement Forward 9 10 0.551597 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV Alignment: BAGGYCABHBTGACCKHV- --------CGTGKCCGCGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 Myc Reverse Complement Original Motif Forward 2 9 1.0488 Consensus sequence (original motif): VGCACGTGGH Consensus sequence (reverse complement motif): DCCACGTGCV Alignment: VGCACGTGGH-- -CGTGKCCGCGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 6 Mycn Reverse Complement Original Motif Forward 2 9 1.04892 Consensus sequence (original motif): HSCACGTGGC Consensus sequence (reverse complement motif): GCCACGTGSD Alignment: HSCACGTGGC-- -CGTGKCCGCGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 13 MIZF Reverse Complement Original Motif Backward 2 9 1.04904 Consensus sequence (original motif): BAACGTCCGC Consensus sequence (reverse complement motif): GCGGACGTTV Alignment: --BAACGTCCGC CGTGKCCGCGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 Esrrb Original Motif Original Motif Forward 4 9 1.05291 Consensus sequence (original motif): VBBYCAAGGTCA Consensus sequence (reverse complement motif): TGACCTTGMBBB Alignment: VBBYCAAGGTCA-- ---CCGCGGRCACG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 HNF4A Reverse Complement Reverse Complement Forward 6 8 1.55795 Consensus sequence (original motif): RGGBCAAAGKYCA Consensus sequence (reverse complement motif): TGMYCTTTGBCCK Alignment: TGMYCTTTGBCCK--- -----CGTGKCCGCGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 4 Motif name: Esrrb Consensus sequence (original motif): VBBYCAAGGTCA Consensus sequence (reverse complement motif): TGACCTTGMBBB *************************************************************** Best Matches for Top Significant Motif ID 4 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 TgTGgTGTCACAGTGCTCC Reverse Complement Original Motif Backward 1 12 0.0772556 Consensus sequence (original motif): TGTGGTGTCACAGTGCTCC Consensus sequence (reverse complement motif): GGAGCACTGTGACACCACA Alignment: TGTGGTGTCACAGTGCTCC -------TGACCTTGMBBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 23 TGGAGCACTGTGACAcCACAGTGg Reverse Complement Reverse Complement Forward 12 12 0.0785385 Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA Alignment: CCACTGTGVTGTCACAGTGCTCCA -----------TGACCTTGMBBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement Backward 11 12 0.0832722 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: AGTGSWSCACTGTGAMAMCACAGTG ---VBBYCAAGGTCA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 25 wwCCAmAGTCmt Original Motif Original Motif Backward 2 11 0.558919 Consensus sequence (original motif): DDCCAMAGTCHB Consensus sequence (reverse complement motif): VDGACTRTGGDD Alignment: -DDCCAMAGTCHB VBBYCAAGGTCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 28 ssGCkTGCssk Reverse Complement Original Motif Backward 1 11 0.581406 Consensus sequence (original motif): SSGCKTGCSSK Consensus sequence (reverse complement motif): YSSGCAYGCSS Alignment: -SSGCKTGCSSK TGACCTTGMBBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 24 ssCCCCGCSssk Reverse Complement Original Motif Backward 2 11 0.583683 Consensus sequence (original motif): SBCCCCGCCSBB Consensus sequence (reverse complement motif): BBSGGCGGGGBS Alignment: -SBCCCCGCCSBB TGACCTTGMBBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 27 AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif Forward 15 10 1.08683 Consensus sequence (original motif): AGTGCTCCACTGTGGTGTCACAGT Consensus sequence (reverse complement motif): ACTGTGACACCACAGTGGAGCACT Alignment: AGTGCTCCACTGTGGTGTCACAGT-- --------------VBBYCAAGGTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 19 atactttggc Original Motif Reverse Complement Backward 1 10 1.08726 Consensus sequence (original motif): ATACTTTGGC Consensus sequence (reverse complement motif): GCCAAAGTAT Alignment: --GCCAAAGTAT VBBYCAAGGTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 29 cCGCGGrCACG Original Motif Original Motif Backward 3 9 1.57579 Consensus sequence (original motif): CCGCGGRCACG Consensus sequence (reverse complement motif): CGTGKCCGCGG Alignment: ---CCGCGGRCACG VBBYCAAGGTCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 21 AmTGTGACACCACAGT Original Motif Original Motif Backward 10 7 2.57595 Consensus sequence (original motif): AMTGTGACACCACAGT Consensus sequence (reverse complement motif): ACTGTGGTGTCACART Alignment: -----AMTGTGACACCACAGT VBBYCAAGGTCA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 13 Motif name: MIZF Consensus sequence (original motif): BAACGTCCGC Consensus sequence (reverse complement motif): GCGGACGTTV *************************************************************** Best Matches for Top Significant Motif ID 13 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 32 gCGCGCsCgsG Original Motif Original Motif Forward 1 10 0.0651598 Consensus sequence (original motif): GCGCGCSCGCG Consensus sequence (reverse complement motif): CGCGSGCGCGC Alignment: GCGCGCSCGCG BAACGTCCGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 19 atactttggc Original Motif Original Motif Backward 1 10 0.0803571 Consensus sequence (original motif): ATACTTTGGC Consensus sequence (reverse complement motif): GCCAAAGTAT Alignment: ATACTTTGGC BAACGTCCGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 29 cCGCGGrCACG Reverse Complement Original Motif Forward 3 9 0.560913 Consensus sequence (original motif): CCGCGGRCACG Consensus sequence (reverse complement motif): CGTGKCCGCGG Alignment: CCGCGGRCACG- --GCGGACGTTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 31 ctatacggacg Reverse Complement Reverse Complement Backward 3 9 0.562302 Consensus sequence (original motif): CTATACGGACG Consensus sequence (reverse complement motif): CGTCCGTATAG Alignment: -CGTCCGTATAG GCGGACGTTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 25 wwCCAmAGTCmt Original Motif Original Motif Forward 4 9 0.562428 Consensus sequence (original motif): DDCCAMAGTCHB Consensus sequence (reverse complement motif): VDGACTRTGGDD Alignment: DDCCAMAGTCHB- ---BAACGTCCGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 18 sscCCCGCGcs Reverse Complement Reverse Complement Forward 4 8 1.06446 Consensus sequence (original motif): BSCCCCGCGBS Consensus sequence (reverse complement motif): SBCGCGGGGSB Alignment: SBCGCGGGGSB-- ---GCGGACGTTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 24 ssCCCCGCSssk Reverse Complement Reverse Complement Forward 5 8 1.07197 Consensus sequence (original motif): SBCCCCGCCSBB Consensus sequence (reverse complement motif): BBSGGCGGGGBS Alignment: BBSGGCGGGGBS-- ----GCGGACGTTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 33 srACyCCGAyr Reverse Complement Original Motif Forward 5 7 1.55 Consensus sequence (original motif): SRACYCCGAYR Consensus sequence (reverse complement motif): KKTCGGKGTKS Alignment: SRACYCCGAYR--- ----GCGGACGTTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 27 AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif Backward 18 7 1.5706 Consensus sequence (original motif): AGTGCTCCACTGTGGTGTCACAGT Consensus sequence (reverse complement motif): ACTGTGACACCACAGTGGAGCACT Alignment: ---AGTGCTCCACTGTGGTGTCACAGT BAACGTCCGC----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 26 CAcCACAGTGGAGCAct Reverse Complement Original Motif Forward 11 7 1.57176 Consensus sequence (original motif): CAHCACAGTGGAGCACT Consensus sequence (reverse complement motif): AGTGCTCCACTGTGDTG Alignment: CAHCACAGTGGAGCACT--- ----------GCGGACGTTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- **************************************************************************************************************************************************************************************************** **************************************************************** Significant Motifs - Global and Local Matching (Highest to Lowest) **************************************************************** Dataset #: 1 Motif ID: 5 Motif name: ZEB1 Consensus sequence (original motif): CACCTD Consensus sequence (reverse complement motif): HAGGTG ************************************************************** Best Matches for Significant Motif ID 5 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 16 CTCF Reverse Complement Original Motif Forward 8 6 0 Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM Alignment: YDRCCASYAGRKGGCRSYV -------HAGGTG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 12 RORA_1 Original Motif Reverse Complement Backward 4 6 0.00688881 Consensus sequence (original motif): AWVDAGGTCA Consensus sequence (reverse complement motif): TGACCTDVWT Alignment: TGACCTDVWT -CACCTD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Reverse Complement Reverse Complement Backward 6 6 0.00707323 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: GGYGCTGTCCATGGTGCTGAA ----------HAGGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 Esrrb Reverse Complement Original Motif Forward 2 6 0.013046 Consensus sequence (original motif): VBBYCAAGGTCA Consensus sequence (reverse complement motif): TGACCTTGMBBB Alignment: VBBYCAAGGTCA -HAGGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 NR1H2RXRA Original Motif Reverse Complement Backward 2 6 0.0160352 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: GTTGACCTTTGACCTTT ----------CACCTD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 PPARGRXRA Original Motif Reverse Complement Backward 9 6 0.0192435 Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB Alignment: TGRCCTKTGHCCKAB -CACCTD-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 11 NR4A2 Original Motif Reverse Complement Backward 1 6 0.0216496 Consensus sequence (original motif): AAGGTCAC Consensus sequence (reverse complement motif): GTGACCTT Alignment: GTGACCTT --CACCTD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Original Motif Reverse Complement Forward 5 6 0.022947 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: MGGTCAGGGTGACCTRDBHV ----CACCTD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 6 Mycn Original Motif Original Motif Backward 3 6 0.0246463 Consensus sequence (original motif): HSCACGTGGC Consensus sequence (reverse complement motif): GCCACGTGSD Alignment: HSCACGTGGC --CACCTD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 Myc Reverse Complement Reverse Complement Forward 3 6 0.025129 Consensus sequence (original motif): VGCACGTGGH Consensus sequence (reverse complement motif): DCCACGTGCV Alignment: DCCACGTGCV --HAGGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 28 Motif name: ssGCkTGCssk Consensus sequence (original motif): SSGCKTGCSSK Consensus sequence (reverse complement motif): YSSGCAYGCSS ************************************************************** Best Matches for Significant Motif ID 28 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 32 gCGCGCsCgsG Original Motif Original Motif Backward 1 11 0.00456539 Consensus sequence (original motif): GCGCGCSCGCG Consensus sequence (reverse complement motif): CGCGSGCGCGC Alignment: GCGCGCSCGCG SSGCKTGCSSK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 24 ssCCCCGCSssk Reverse Complement Reverse Complement Forward 2 11 0.0176347 Consensus sequence (original motif): SBCCCCGCCSBB Consensus sequence (reverse complement motif): BBSGGCGGGGBS Alignment: BBSGGCGGGGBS -YSSGCAYGCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 18 sscCCCGCGcs Reverse Complement Reverse Complement Backward 1 11 0.0190954 Consensus sequence (original motif): BSCCCCGCGBS Consensus sequence (reverse complement motif): SBCGCGGGGSB Alignment: SBCGCGGGGSB YSSGCAYGCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 29 cCGCGGrCACG Original Motif Original Motif Backward 1 11 0.0276515 Consensus sequence (original motif): CCGCGGRCACG Consensus sequence (reverse complement motif): CGTGKCCGCGG Alignment: CCGCGGRCACG SSGCKTGCSSK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 16 CTCF Original Motif Original Motif Forward 8 11 0.0349439 Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM Alignment: YDRCCASYAGRKGGCRSYV -------SSGCKTGCSSK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 Esrrb Reverse Complement Original Motif Forward 2 11 0.0358701 Consensus sequence (original motif): VBBYCAAGGTCA Consensus sequence (reverse complement motif): TGACCTTGMBBB Alignment: VBBYCAAGGTCA -YSSGCAYGCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 ESR2 Reverse Complement Original Motif Backward 3 11 0.0379074 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV Alignment: VHRGGTCABDBTGMCCTB -----YSSGCAYGCSS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Reverse Complement Original Motif Backward 10 11 0.0409322 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: TTCAGCACCATGGACAGCKCC -YSSGCAYGCSS--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 PPARGRXRA Reverse Complement Original Motif Forward 3 11 0.041419 Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB Alignment: BTRGGDCARAGGKCA --YSSGCAYGCSS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 HNF4A Reverse Complement Original Motif Forward 3 11 0.0437981 Consensus sequence (original motif): RGGBCAAAGKYCA Consensus sequence (reverse complement motif): TGMYCTTTGBCCK Alignment: RGGBCAAAGKYCA --YSSGCAYGCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 25 Motif name: wwCCAmAGTCmt Consensus sequence (original motif): DDCCAMAGTCHB Consensus sequence (reverse complement motif): VDGACTRTGGDD ************************************************************** Best Matches for Significant Motif ID 25 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Original Motif Original Motif Backward 6 12 0.0263648 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: CACTGTGRTRTCACAGTGSWSCACT --------DDCCAMAGTCHB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 20 CagTGCTCCACTGTGgT Reverse Complement Reverse Complement Backward 6 12 0.0282828 Consensus sequence (original motif): CAGTGCTCCACTGTGBT Consensus sequence (reverse complement motif): ABCACAGTGGAGCACTG Alignment: ABCACAGTGGAGCACTG VDGACTRTGGDD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 26 CAcCACAGTGGAGCAct Reverse Complement Reverse Complement Forward 6 12 0.0291095 Consensus sequence (original motif): CAHCACAGTGGAGCACT Consensus sequence (reverse complement motif): AGTGCTCCACTGTGDTG Alignment: AGTGCTCCACTGTGDTG -----VDGACTRTGGDD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 27 AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif Forward 6 12 0.0301919 Consensus sequence (original motif): AGTGCTCCACTGTGGTGTCACAGT Consensus sequence (reverse complement motif): ACTGTGACACCACAGTGGAGCACT Alignment: AGTGCTCCACTGTGGTGTCACAGT -----VDGACTRTGGDD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 HNF4A Original Motif Original Motif Forward 2 12 0.032442 Consensus sequence (original motif): RGGBCAAAGKYCA Consensus sequence (reverse complement motif): TGMYCTTTGBCCK Alignment: RGGBCAAAGKYCA -DDCCAMAGTCHB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 23 TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement Forward 4 12 0.0360702 Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA Alignment: CCACTGTGVTGTCACAGTGCTCCA ---DDCCAMAGTCHB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Original Motif Reverse Complement Forward 4 12 0.0391228 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: GGYGCTGTCCATGGTGCTGAA ---DDCCAMAGTCHB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 TgTGgTGTCACAGTGCTCC Original Motif Original Motif Backward 3 12 0.0393782 Consensus sequence (original motif): TGTGGTGTCACAGTGCTCC Consensus sequence (reverse complement motif): GGAGCACTGTGACACCACA Alignment: TGTGGTGTCACAGTGCTCC -----DDCCAMAGTCHB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Original Motif Original Motif Backward 9 12 0.0407304 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: VDBHMAGGTCACCCTGACCY DDCCAMAGTCHB-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 NR1H2RXRA Original Motif Original Motif Backward 2 12 0.0463384 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: AAAGGTCAAAGGTCAAC ----DDCCAMAGTCHB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 19 Motif name: atactttggc Consensus sequence (original motif): ATACTTTGGC Consensus sequence (reverse complement motif): GCCAAAGTAT ************************************************************** Best Matches for Significant Motif ID 19 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 25 wwCCAmAGTCmt Reverse Complement Original Motif Forward 2 10 0.0215909 Consensus sequence (original motif): DDCCAMAGTCHB Consensus sequence (reverse complement motif): VDGACTRTGGDD Alignment: DDCCAMAGTCHB -GCCAAAGTAT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 30 taaacgatgcc Reverse Complement Reverse Complement Backward 2 10 0.0375 Consensus sequence (original motif): TAAACGATGCC Consensus sequence (reverse complement motif): GGCATCGTTTA Alignment: GGCATCGTTTA GCCAAAGTAT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 NR1H2RXRA Original Motif Reverse Complement Backward 4 10 0.0395 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: GTTGACCTTTGACCTTT ----ATACTTTGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 TgTGgTGTCACAGTGCTCC Original Motif Reverse Complement Backward 4 10 0.0472222 Consensus sequence (original motif): TGTGGTGTCACAGTGCTCC Consensus sequence (reverse complement motif): GGAGCACTGTGACACCACA Alignment: GGAGCACTGTGACACCACA ------ATACTTTGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Original Motif Forward 10 10 0.0474206 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: CACTGTGRTRTCACAGTGSWSCACT ---------GCCAAAGTAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 HNF4A Original Motif Reverse Complement Forward 3 10 0.0483209 Consensus sequence (original motif): RGGBCAAAGKYCA Consensus sequence (reverse complement motif): TGMYCTTTGBCCK Alignment: TGMYCTTTGBCCK --ATACTTTGGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 NR2F1 Original Motif Original Motif Forward 2 10 0.0490385 Consensus sequence (original motif): TGAMCTTTGMMCYT Consensus sequence (reverse complement motif): AKGYYCAAAGRTCA Alignment: TGAMCTTTGMMCYT -ATACTTTGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 23 TGGAGCACTGTGACAcCACAGTGg Reverse Complement Reverse Complement Backward 5 10 0.0493243 Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA Alignment: CCACTGTGVTGTCACAGTGCTCCA ----------GCCAAAGTAT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 27 AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Reverse Complement Forward 9 10 0.0498239 Consensus sequence (original motif): AGTGCTCCACTGTGGTGTCACAGT Consensus sequence (reverse complement motif): ACTGTGACACCACAGTGGAGCACT Alignment: ACTGTGACACCACAGTGGAGCACT --------GCCAAAGTAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 26 CAcCACAGTGGAGCAct Original Motif Reverse Complement Forward 7 10 0.0527344 Consensus sequence (original motif): CAHCACAGTGGAGCACT Consensus sequence (reverse complement motif): AGTGCTCCACTGTGDTG Alignment: AGTGCTCCACTGTGDTG ------ATACTTTGGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 11 Motif name: NR4A2 Consensus sequence (original motif): AAGGTCAC Consensus sequence (reverse complement motif): GTGACCTT ************************************************************** Best Matches for Significant Motif ID 11 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 NR1H2RXRA Original Motif Original Motif Backward 9 8 0.0167759 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: AAAGGTCAAAGGTCAAC -AAGGTCAC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Original Motif Original Motif Forward 5 8 0.0195235 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: VDBHMAGGTCACCCTGACCY ----AAGGTCAC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 ESR2 Reverse Complement Reverse Complement Backward 2 8 0.0198372 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV Alignment: BAGGYCABHBTGACCKHV ---------GTGACCTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 PPARGRXRA Original Motif Original Motif Backward 7 8 0.0495607 Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB Alignment: BTRGGDCARAGGKCA -AAGGTCAC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Original Motif Original Motif Forward 7 8 0.0557243 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: CACTGTGRTRTCACAGTGSWSCACT ------AAGGTCAC----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 NR2F1 Original Motif Reverse Complement Backward 1 8 0.0564874 Consensus sequence (original motif): TGAMCTTTGMMCYT Consensus sequence (reverse complement motif): AKGYYCAAAGRTCA Alignment: AKGYYCAAAGRTCA ------AAGGTCAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Reverse Complement Reverse Complement Forward 5 8 0.0594649 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: GGYGCTGTCCATGGTGCTGAA ----GTGACCTT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 23 TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement Forward 8 8 0.060729 Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA Alignment: CCACTGTGVTGTCACAGTGCTCCA -------AAGGTCAC--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 21 AmTGTGACACCACAGT Original Motif Reverse Complement Backward 4 8 0.0645146 Consensus sequence (original motif): AMTGTGACACCACAGT Consensus sequence (reverse complement motif): ACTGTGGTGTCACART Alignment: ACTGTGGTGTCACART -----AAGGTCAC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 TgTGgTGTCACAGTGCTCC Original Motif Original Motif Backward 9 8 0.0695512 Consensus sequence (original motif): TGTGGTGTCACAGTGCTCC Consensus sequence (reverse complement motif): GGAGCACTGTGACACCACA Alignment: TGTGGTGTCACAGTGCTCC ---AAGGTCAC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 4 Motif name: Esrrb Consensus sequence (original motif): VBBYCAAGGTCA Consensus sequence (reverse complement motif): TGACCTTGMBBB ************************************************************** Best Matches for Significant Motif ID 4 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 NR2F1 Reverse Complement Original Motif Backward 1 12 0.0442611 Consensus sequence (original motif): TGAMCTTTGMMCYT Consensus sequence (reverse complement motif): AKGYYCAAAGRTCA Alignment: TGAMCTTTGMMCYT --TGACCTTGMBBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 PPARGRXRA Original Motif Original Motif Forward 4 12 0.04699 Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB Alignment: BTRGGDCARAGGKCA ---VBBYCAAGGTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 HNF4A Original Motif Original Motif Backward 1 12 0.0470808 Consensus sequence (original motif): RGGBCAAAGKYCA Consensus sequence (reverse complement motif): TGMYCTTTGBCCK Alignment: RGGBCAAAGKYCA -VBBYCAAGGTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 NR1H2RXRA Original Motif Original Motif Backward 3 12 0.0506977 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: AAAGGTCAAAGGTCAAC ---VBBYCAAGGTCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Reverse Complement Original Motif Backward 9 12 0.0628484 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: VDBHMAGGTCACCCTGACCY TGACCTTGMBBB-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 ESR2 Reverse Complement Original Motif Forward 6 12 0.0694613 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV Alignment: VHRGGTCABDBTGMCCTB -----TGACCTTGMBBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Original Motif Original Motif Forward 5 12 0.0713236 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: TTCAGCACCATGGACAGCKCC ----VBBYCAAGGTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 TgTGgTGTCACAGTGCTCC Reverse Complement Original Motif Backward 1 12 0.0772556 Consensus sequence (original motif): TGTGGTGTCACAGTGCTCC Consensus sequence (reverse complement motif): GGAGCACTGTGACACCACA Alignment: TGTGGTGTCACAGTGCTCC -------TGACCTTGMBBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 23 TGGAGCACTGTGACAcCACAGTGg Reverse Complement Reverse Complement Forward 12 12 0.0785385 Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA Alignment: CCACTGTGVTGTCACAGTGCTCCA -----------TGACCTTGMBBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement Backward 11 12 0.0832722 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: AGTGSWSCACTGTGAMAMCACAGTG ---VBBYCAAGGTCA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 1 Motif name: HNF4A Consensus sequence (original motif): RGGBCAAAGKYCA Consensus sequence (reverse complement motif): TGMYCTTTGBCCK ************************************************************** Best Matches for Significant Motif ID 1 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 PPARGRXRA Reverse Complement Reverse Complement Backward 3 13 0 Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB Alignment: TGRCCTKTGHCCKAB TGMYCTTTGBCCK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 NR2F1 Original Motif Reverse Complement Forward 2 13 0.0227413 Consensus sequence (original motif): TGAMCTTTGMMCYT Consensus sequence (reverse complement motif): AKGYYCAAAGRTCA Alignment: AKGYYCAAAGRTCA -RGGBCAAAGKYCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 NR1H2RXRA Original Motif Original Motif Forward 3 13 0.0423023 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: AAAGGTCAAAGGTCAAC --RGGBCAAAGKYCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Original Motif Original Motif Backward 6 13 0.0557654 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: CACTGTGRTRTCACAGTGSWSCACT -------RGGBCAAAGKYCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 23 TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement Backward 4 13 0.0656443 Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA Alignment: CCACTGTGVTGTCACAGTGCTCCA --------RGGBCAAAGKYCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 ESR2 Original Motif Original Motif Forward 3 13 0.0671615 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV Alignment: VHRGGTCABDBTGMCCTB --RGGBCAAAGKYCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 TgTGgTGTCACAGTGCTCC Original Motif Original Motif Backward 3 13 0.0681338 Consensus sequence (original motif): TGTGGTGTCACAGTGCTCC Consensus sequence (reverse complement motif): GGAGCACTGTGACACCACA Alignment: TGTGGTGTCACAGTGCTCC ----RGGBCAAAGKYCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Original Motif Reverse Complement Forward 1 13 0.0711137 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: MGGTCAGGGTGACCTRDBHV RGGBCAAAGKYCA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Reverse Complement Reverse Complement Backward 4 13 0.0741922 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: GGYGCTGTCCATGGTGCTGAA -----TGMYCTTTGBCCK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 27 AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement Backward 6 13 0.0799096 Consensus sequence (original motif): AGTGCTCCACTGTGGTGTCACAGT Consensus sequence (reverse complement motif): ACTGTGACACCACAGTGGAGCACT Alignment: ACTGTGACACCACAGTGGAGCACT ------RGGBCAAAGKYCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 16 CTCF Original Motif Original Motif Forward 4 13 0.0850642 Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM Alignment: YDRCCASYAGRKGGCRSYV ---RGGBCAAAGKYCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 12 Motif name: RORA_1 Consensus sequence (original motif): AWVDAGGTCA Consensus sequence (reverse complement motif): TGACCTDVWT ************************************************************** Best Matches for Significant Motif ID 12 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 Esrrb Original Motif Original Motif Backward 1 10 0.029401 Consensus sequence (original motif): VBBYCAAGGTCA Consensus sequence (reverse complement motif): TGACCTTGMBBB Alignment: VBBYCAAGGTCA --AWVDAGGTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Reverse Complement Reverse Complement Backward 2 10 0.0417851 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: MGGTCAGGGTGACCTRDBHV ---------TGACCTDVWT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 NR1H2RXRA Original Motif Original Motif Forward 6 10 0.05425 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: AAAGGTCAAAGGTCAAC -----AWVDAGGTCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 NR2F1 Reverse Complement Original Motif Forward 5 10 0.0654808 Consensus sequence (original motif): TGAMCTTTGMMCYT Consensus sequence (reverse complement motif): AKGYYCAAAGRTCA Alignment: TGAMCTTTGMMCYT ----TGACCTDVWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 PPARGRXRA Original Motif Original Motif Backward 1 10 0.06668 Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB Alignment: BTRGGDCARAGGKCA -----AWVDAGGTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Original Motif Original Motif Forward 7 10 0.0755608 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: TTCAGCACCATGGACAGCKCC ------AWVDAGGTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 HNF4A Original Motif Original Motif Forward 4 10 0.0803396 Consensus sequence (original motif): RGGBCAAAGKYCA Consensus sequence (reverse complement motif): TGMYCTTTGBCCK Alignment: RGGBCAAAGKYCA ---AWVDAGGTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 TgTGgTGTCACAGTGCTCC Reverse Complement Reverse Complement Backward 1 10 0.0889306 Consensus sequence (original motif): TGTGGTGTCACAGTGCTCC Consensus sequence (reverse complement motif): GGAGCACTGTGACACCACA Alignment: GGAGCACTGTGACACCACA ---------TGACCTDVWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 25 wwCCAmAGTCmt Original Motif Original Motif Backward 2 10 0.09225 Consensus sequence (original motif): DDCCAMAGTCHB Consensus sequence (reverse complement motif): VDGACTRTGGDD Alignment: DDCCAMAGTCHB -AWVDAGGTCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 ESR2 Original Motif Reverse Complement Backward 4 10 0.0988214 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV Alignment: BAGGYCABHBTGACCKHV -----AWVDAGGTCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 6 Motif name: Mycn Consensus sequence (original motif): HSCACGTGGC Consensus sequence (reverse complement motif): GCCACGTGSD ************************************************************** Best Matches for Significant Motif ID 6 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 Myc Reverse Complement Reverse Complement Forward 1 10 0 Consensus sequence (original motif): VGCACGTGGH Consensus sequence (reverse complement motif): DCCACGTGCV Alignment: DCCACGTGCV GCCACGTGSD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 18 sscCCCGCGcs Reverse Complement Original Motif Backward 1 10 0.0654819 Consensus sequence (original motif): BSCCCCGCGBS Consensus sequence (reverse complement motif): SBCGCGGGGSB Alignment: BSCCCCGCGBS -GCCACGTGSD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 16 CTCF Original Motif Original Motif Forward 6 10 0.0679017 Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM Alignment: YDRCCASYAGRKGGCRSYV -----HSCACGTGGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 24 ssCCCCGCSssk Original Motif Reverse Complement Forward 2 10 0.0704988 Consensus sequence (original motif): SBCCCCGCCSBB Consensus sequence (reverse complement motif): BBSGGCGGGGBS Alignment: BBSGGCGGGGBS -HSCACGTGGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement Backward 10 10 0.0883224 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: AGTGSWSCACTGTGAMAMCACAGTG ------GCCACGTGSD--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Reverse Complement Reverse Complement Backward 3 10 0.089863 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: MGGTCAGGGTGACCTRDBHV --------GCCACGTGSD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 20 CagTGCTCCACTGTGgT Reverse Complement Reverse Complement Backward 7 10 0.0943014 Consensus sequence (original motif): CAGTGCTCCACTGTGBT Consensus sequence (reverse complement motif): ABCACAGTGGAGCACTG Alignment: ABCACAGTGGAGCACTG -GCCACGTGSD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 HNF4A Reverse Complement Reverse Complement Forward 2 10 0.0947124 Consensus sequence (original motif): RGGBCAAAGKYCA Consensus sequence (reverse complement motif): TGMYCTTTGBCCK Alignment: TGMYCTTTGBCCK -GCCACGTGSD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 27 AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Reverse Complement Backward 6 10 0.0949359 Consensus sequence (original motif): AGTGCTCCACTGTGGTGTCACAGT Consensus sequence (reverse complement motif): ACTGTGACACCACAGTGGAGCACT Alignment: ACTGTGACACCACAGTGGAGCACT ---------GCCACGTGSD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 PPARGRXRA Reverse Complement Reverse Complement Backward 5 10 0.0954444 Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB Alignment: TGRCCTKTGHCCKAB -GCCACGTGSD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 8 Motif name: Myc Consensus sequence (original motif): VGCACGTGGH Consensus sequence (reverse complement motif): DCCACGTGCV ************************************************************** Best Matches for Significant Motif ID 8 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 6 Mycn Original Motif Original Motif Backward 1 10 0 Consensus sequence (original motif): HSCACGTGGC Consensus sequence (reverse complement motif): GCCACGTGSD Alignment: HSCACGTGGC VGCACGTGGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 18 sscCCCGCGcs Reverse Complement Original Motif Forward 2 10 0.064853 Consensus sequence (original motif): BSCCCCGCGBS Consensus sequence (reverse complement motif): SBCGCGGGGSB Alignment: BSCCCCGCGBS -DCCACGTGCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 24 ssCCCCGCSssk Reverse Complement Original Motif Backward 2 10 0.0728588 Consensus sequence (original motif): SBCCCCGCCSBB Consensus sequence (reverse complement motif): BBSGGCGGGGBS Alignment: SBCCCCGCCSBB -DCCACGTGCV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 16 CTCF Original Motif Reverse Complement Forward 8 10 0.0754257 Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM Alignment: BMSMGCCYMCTKSTGGMHM -------VGCACGTGGH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Original Motif Backward 6 10 0.0888909 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: CACTGTGRTRTCACAGTGSWSCACT ----------DCCACGTGCV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 HNF4A Original Motif Reverse Complement Backward 1 10 0.0934488 Consensus sequence (original motif): RGGBCAAAGKYCA Consensus sequence (reverse complement motif): TGMYCTTTGBCCK Alignment: TGMYCTTTGBCCK ---VGCACGTGGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Reverse Complement Reverse Complement Backward 3 10 0.0940438 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: MGGTCAGGGTGACCTRDBHV --------DCCACGTGCV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 20 CagTGCTCCACTGTGgT Reverse Complement Reverse Complement Backward 7 10 0.0955234 Consensus sequence (original motif): CAGTGCTCCACTGTGBT Consensus sequence (reverse complement motif): ABCACAGTGGAGCACTG Alignment: ABCACAGTGGAGCACTG -DCCACGTGCV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 ESR2 Original Motif Original Motif Forward 5 10 0.0968598 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV Alignment: VHRGGTCABDBTGMCCTB ----VGCACGTGGH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 23 TGGAGCACTGTGACAcCACAGTGg Reverse Complement Original Motif Backward 11 10 0.0971125 Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA Alignment: TGGAGCACTGTGACAVCACAGTGG ----DCCACGTGCV---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- **************************************************************************************************************************************************************************************************** ********************************************************************** Best Matches for Each Motif (Highest to Lowest) ***************************************************************************** Dataset #: 1 Motif ID: 1 Motif name: HNF4A Consensus sequence (original motif): RGGBCAAAGKYCA Consensus sequence (reverse complement motif): TGMYCTTTGBCCK ************************************************************************ Best Matches for Motif ID 1 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 PPARGRXRA Reverse Complement Reverse Complement Backward 3 13 0 Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB Alignment: TGRCCTKTGHCCKAB TGMYCTTTGBCCK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 NR2F1 Original Motif Reverse Complement Forward 2 13 0.0227413 Consensus sequence (original motif): TGAMCTTTGMMCYT Consensus sequence (reverse complement motif): AKGYYCAAAGRTCA Alignment: AKGYYCAAAGRTCA -RGGBCAAAGKYCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 NR1H2RXRA Original Motif Original Motif Forward 3 13 0.0423023 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: AAAGGTCAAAGGTCAAC --RGGBCAAAGKYCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Original Motif Original Motif Backward 6 13 0.0557654 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: CACTGTGRTRTCACAGTGSWSCACT -------RGGBCAAAGKYCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 23 TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement Backward 4 13 0.0656443 Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA Alignment: CCACTGTGVTGTCACAGTGCTCCA --------RGGBCAAAGKYCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 ESR2 Original Motif Original Motif Forward 3 13 0.0671615 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV Alignment: VHRGGTCABDBTGMCCTB --RGGBCAAAGKYCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 TgTGgTGTCACAGTGCTCC Original Motif Original Motif Backward 3 13 0.0681338 Consensus sequence (original motif): TGTGGTGTCACAGTGCTCC Consensus sequence (reverse complement motif): GGAGCACTGTGACACCACA Alignment: TGTGGTGTCACAGTGCTCC ----RGGBCAAAGKYCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Original Motif Reverse Complement Forward 1 13 0.0711137 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: MGGTCAGGGTGACCTRDBHV RGGBCAAAGKYCA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Reverse Complement Reverse Complement Backward 4 13 0.0741922 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: GGYGCTGTCCATGGTGCTGAA -----TGMYCTTTGBCCK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 27 AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement Backward 6 13 0.0799096 Consensus sequence (original motif): AGTGCTCCACTGTGGTGTCACAGT Consensus sequence (reverse complement motif): ACTGTGACACCACAGTGGAGCACT Alignment: ACTGTGACACCACAGTGGAGCACT ------RGGBCAAAGKYCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 16 CTCF Original Motif Original Motif Forward 4 13 0.0850642 Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM Alignment: YDRCCASYAGRKGGCRSYV ---RGGBCAAAGKYCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 2 Motif name: NR2F1 Consensus sequence (original motif): TGAMCTTTGMMCYT Consensus sequence (reverse complement motif): AKGYYCAAAGRTCA ************************************************************************ Best Matches for Motif ID 2 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 NR1H2RXRA Original Motif Reverse Complement Backward 2 14 0.0174588 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: GTTGACCTTTGACCTTT --TGAMCTTTGMMCYT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 PPARGRXRA Original Motif Reverse Complement Backward 2 14 0.0278283 Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB Alignment: TGRCCTKTGHCCKAB TGAMCTTTGMMCYT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement Backward 7 14 0.0597647 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: AGTGSWSCACTGTGAMAMCACAGTG -----TGAMCTTTGMMCYT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 ESR2 Original Motif Reverse Complement Backward 2 14 0.0710475 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV Alignment: BAGGYCABHBTGACCKHV ---TGAMCTTTGMMCYT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Reverse Complement Original Motif Backward 6 14 0.071796 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: TTCAGCACCATGGACAGCKCC --AKGYYCAAAGRTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 23 TGGAGCACTGTGACAcCACAGTGg Original Motif Original Motif Backward 8 14 0.0737285 Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA Alignment: TGGAGCACTGTGACAVCACAGTGG ---TGAMCTTTGMMCYT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 TgTGgTGTCACAGTGCTCC Original Motif Reverse Complement Backward 4 14 0.0739698 Consensus sequence (original motif): TGTGGTGTCACAGTGCTCC Consensus sequence (reverse complement motif): GGAGCACTGTGACACCACA Alignment: GGAGCACTGTGACACCACA --TGAMCTTTGMMCYT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 HNF4A Original Motif Reverse Complement Backward 1 13 0.514048 Consensus sequence (original motif): RGGBCAAAGKYCA Consensus sequence (reverse complement motif): TGMYCTTTGBCCK Alignment: -TGMYCTTTGBCCK TGAMCTTTGMMCYT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Original Motif Original Motif Forward 8 13 0.569869 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: VDBHMAGGTCACCCTGACCY- -------TGAMCTTTGMMCYT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 Esrrb Reverse Complement Original Motif Backward 1 12 1.0303 Consensus sequence (original motif): VBBYCAAGGTCA Consensus sequence (reverse complement motif): TGACCTTGMBBB Alignment: --VBBYCAAGGTCA AKGYYCAAAGRTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 3 Motif name: ESR1 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV ************************************************************************ Best Matches for Motif ID 3 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 23 TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement Backward 2 20 0.0722586 Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA Alignment: CCACTGTGVTGTCACAGTGCTCCA ---VDBHMAGGTCACCCTGACCY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Original Motif Original Motif Forward 3 20 0.0818971 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: CACTGTGRTRTCACAGTGSWSCACT --VDBHMAGGTCACCCTGACCY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 TgTGgTGTCACAGTGCTCC Original Motif Original Motif Backward 1 19 0.566376 Consensus sequence (original motif): TGTGGTGTCACAGTGCTCC Consensus sequence (reverse complement motif): GGAGCACTGTGACACCACA Alignment: -TGTGGTGTCACAGTGCTCC VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 16 CTCF Original Motif Reverse Complement Backward 1 19 0.579928 Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM Alignment: -BMSMGCCYMCTKSTGGMHM VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 ESR2 Original Motif Original Motif Backward 2 17 1.50287 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV Alignment: ---VHRGGTCABDBTGMCCTB VDBHMAGGTCACCCTGACCY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Original Motif Original Motif Forward 6 16 2.07409 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: TTCAGCACCATGGACAGCKCC---- -----VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 21 AmTGTGACACCACAGT Original Motif Reverse Complement Forward 2 15 2.57517 Consensus sequence (original motif): AMTGTGACACCACAGT Consensus sequence (reverse complement motif): ACTGTGGTGTCACART Alignment: ACTGTGGTGTCACART----- -VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 27 AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Reverse Complement Backward 10 15 2.57594 Consensus sequence (original motif): AGTGCTCCACTGTGGTGTCACAGT Consensus sequence (reverse complement motif): ACTGTGACACCACAGTGGAGCACT Alignment: -----ACTGTGACACCACAGTGGAGCACT MGGTCAGGGTGACCTRDBHV--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 PPARGRXRA Reverse Complement Original Motif Backward 2 14 3.07055 Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB Alignment: ------BTRGGDCARAGGKCA MGGTCAGGGTGACCTRDBHV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 NR1H2RXRA Original Motif Original Motif Forward 5 13 3.5678 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: AAAGGTCAAAGGTCAAC------- ----VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 4 Motif name: Esrrb Consensus sequence (original motif): VBBYCAAGGTCA Consensus sequence (reverse complement motif): TGACCTTGMBBB ************************************************************************ Best Matches for Motif ID 4 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 NR2F1 Reverse Complement Original Motif Backward 1 12 0.0442611 Consensus sequence (original motif): TGAMCTTTGMMCYT Consensus sequence (reverse complement motif): AKGYYCAAAGRTCA Alignment: TGAMCTTTGMMCYT --TGACCTTGMBBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 PPARGRXRA Original Motif Original Motif Forward 4 12 0.04699 Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB Alignment: BTRGGDCARAGGKCA ---VBBYCAAGGTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 HNF4A Original Motif Original Motif Backward 1 12 0.0470808 Consensus sequence (original motif): RGGBCAAAGKYCA Consensus sequence (reverse complement motif): TGMYCTTTGBCCK Alignment: RGGBCAAAGKYCA -VBBYCAAGGTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 NR1H2RXRA Original Motif Original Motif Backward 3 12 0.0506977 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: AAAGGTCAAAGGTCAAC ---VBBYCAAGGTCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Reverse Complement Original Motif Backward 9 12 0.0628484 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: VDBHMAGGTCACCCTGACCY TGACCTTGMBBB-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 ESR2 Reverse Complement Original Motif Forward 6 12 0.0694613 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV Alignment: VHRGGTCABDBTGMCCTB -----TGACCTTGMBBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Original Motif Original Motif Forward 5 12 0.0713236 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: TTCAGCACCATGGACAGCKCC ----VBBYCAAGGTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 TgTGgTGTCACAGTGCTCC Reverse Complement Original Motif Backward 1 12 0.0772556 Consensus sequence (original motif): TGTGGTGTCACAGTGCTCC Consensus sequence (reverse complement motif): GGAGCACTGTGACACCACA Alignment: TGTGGTGTCACAGTGCTCC -------TGACCTTGMBBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 23 TGGAGCACTGTGACAcCACAGTGg Reverse Complement Reverse Complement Forward 12 12 0.0785385 Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA Alignment: CCACTGTGVTGTCACAGTGCTCCA -----------TGACCTTGMBBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement Backward 11 12 0.0832722 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: AGTGSWSCACTGTGAMAMCACAGTG ---VBBYCAAGGTCA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 5 Motif name: ZEB1 Consensus sequence (original motif): CACCTD Consensus sequence (reverse complement motif): HAGGTG ************************************************************************ Best Matches for Motif ID 5 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 16 CTCF Reverse Complement Original Motif Forward 8 6 0 Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM Alignment: YDRCCASYAGRKGGCRSYV -------HAGGTG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 12 RORA_1 Original Motif Reverse Complement Backward 4 6 0.00688881 Consensus sequence (original motif): AWVDAGGTCA Consensus sequence (reverse complement motif): TGACCTDVWT Alignment: TGACCTDVWT -CACCTD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Reverse Complement Reverse Complement Backward 6 6 0.00707323 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: GGYGCTGTCCATGGTGCTGAA ----------HAGGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 Esrrb Reverse Complement Original Motif Forward 2 6 0.013046 Consensus sequence (original motif): VBBYCAAGGTCA Consensus sequence (reverse complement motif): TGACCTTGMBBB Alignment: VBBYCAAGGTCA -HAGGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 NR1H2RXRA Original Motif Reverse Complement Backward 2 6 0.0160352 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: GTTGACCTTTGACCTTT ----------CACCTD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 PPARGRXRA Original Motif Reverse Complement Backward 9 6 0.0192435 Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB Alignment: TGRCCTKTGHCCKAB -CACCTD-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 11 NR4A2 Original Motif Reverse Complement Backward 1 6 0.0216496 Consensus sequence (original motif): AAGGTCAC Consensus sequence (reverse complement motif): GTGACCTT Alignment: GTGACCTT --CACCTD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Original Motif Reverse Complement Forward 5 6 0.022947 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: MGGTCAGGGTGACCTRDBHV ----CACCTD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 6 Mycn Original Motif Original Motif Backward 3 6 0.0246463 Consensus sequence (original motif): HSCACGTGGC Consensus sequence (reverse complement motif): GCCACGTGSD Alignment: HSCACGTGGC --CACCTD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 Myc Reverse Complement Reverse Complement Forward 3 6 0.025129 Consensus sequence (original motif): VGCACGTGGH Consensus sequence (reverse complement motif): DCCACGTGCV Alignment: DCCACGTGCV --HAGGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 6 Motif name: Mycn Consensus sequence (original motif): HSCACGTGGC Consensus sequence (reverse complement motif): GCCACGTGSD ************************************************************************ Best Matches for Motif ID 6 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 Myc Reverse Complement Reverse Complement Forward 1 10 0 Consensus sequence (original motif): VGCACGTGGH Consensus sequence (reverse complement motif): DCCACGTGCV Alignment: DCCACGTGCV GCCACGTGSD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 18 sscCCCGCGcs Reverse Complement Original Motif Backward 1 10 0.0654819 Consensus sequence (original motif): BSCCCCGCGBS Consensus sequence (reverse complement motif): SBCGCGGGGSB Alignment: BSCCCCGCGBS -GCCACGTGSD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 16 CTCF Original Motif Original Motif Forward 6 10 0.0679017 Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM Alignment: YDRCCASYAGRKGGCRSYV -----HSCACGTGGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 24 ssCCCCGCSssk Original Motif Reverse Complement Forward 2 10 0.0704988 Consensus sequence (original motif): SBCCCCGCCSBB Consensus sequence (reverse complement motif): BBSGGCGGGGBS Alignment: BBSGGCGGGGBS -HSCACGTGGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement Backward 10 10 0.0883224 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: AGTGSWSCACTGTGAMAMCACAGTG ------GCCACGTGSD--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Reverse Complement Reverse Complement Backward 3 10 0.089863 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: MGGTCAGGGTGACCTRDBHV --------GCCACGTGSD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 20 CagTGCTCCACTGTGgT Reverse Complement Reverse Complement Backward 7 10 0.0943014 Consensus sequence (original motif): CAGTGCTCCACTGTGBT Consensus sequence (reverse complement motif): ABCACAGTGGAGCACTG Alignment: ABCACAGTGGAGCACTG -GCCACGTGSD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 HNF4A Reverse Complement Reverse Complement Forward 2 10 0.0947124 Consensus sequence (original motif): RGGBCAAAGKYCA Consensus sequence (reverse complement motif): TGMYCTTTGBCCK Alignment: TGMYCTTTGBCCK -GCCACGTGSD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 27 AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Reverse Complement Backward 6 10 0.0949359 Consensus sequence (original motif): AGTGCTCCACTGTGGTGTCACAGT Consensus sequence (reverse complement motif): ACTGTGACACCACAGTGGAGCACT Alignment: ACTGTGACACCACAGTGGAGCACT ---------GCCACGTGSD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 PPARGRXRA Reverse Complement Reverse Complement Backward 5 10 0.0954444 Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB Alignment: TGRCCTKTGHCCKAB -GCCACGTGSD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 7 Motif name: REST Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA ************************************************************************ Best Matches for Motif ID 7 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 27 AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif Backward 6 19 0.0605225 Consensus sequence (original motif): AGTGCTCCACTGTGGTGTCACAGT Consensus sequence (reverse complement motif): ACTGTGACACCACAGTGGAGCACT Alignment: --AGTGCTCCACTGTGGTGTCACAGT GGYGCTGTCCATGGTGCTGAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Original Motif Original Motif Backward 5 16 1.56264 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: -----VDBHMAGGTCACCCTGACCY TTCAGCACCATGGACAGCKCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 20 CagTGCTCCACTGTGgT Reverse Complement Reverse Complement Backward 4 14 2.57032 Consensus sequence (original motif): CAGTGCTCCACTGTGBT Consensus sequence (reverse complement motif): ABCACAGTGGAGCACTG Alignment: -------ABCACAGTGGAGCACTG GGYGCTGTCCATGGTGCTGAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 21 AmTGTGACACCACAGT Reverse Complement Reverse Complement Forward 3 14 2.57054 Consensus sequence (original motif): AMTGTGACACCACAGT Consensus sequence (reverse complement motif): ACTGTGGTGTCACART Alignment: ACTGTGGTGTCACART------- --GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 23 TGGAGCACTGTGACAcCACAGTGg Original Motif Original Motif Forward 12 13 3.04841 Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA Alignment: TGGAGCACTGTGACAVCACAGTGG-------- -----------TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 ESR2 Reverse Complement Reverse Complement Forward 6 13 3.05156 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV Alignment: BAGGYCABHBTGACCKHV-------- -----GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 HNF4A Reverse Complement Reverse Complement Forward 1 13 3.06375 Consensus sequence (original motif): RGGBCAAAGKYCA Consensus sequence (reverse complement motif): TGMYCTTTGBCCK Alignment: TGMYCTTTGBCCK-------- GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 PPARGRXRA Original Motif Original Motif Backward 3 13 3.06574 Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB Alignment: --------BTRGGDCARAGGKCA TTCAGCACCATGGACAGCKCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement Forward 14 12 3.55903 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: AGTGSWSCACTGTGAMAMCACAGTG--------- -------------TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 25 wwCCAmAGTCmt Reverse Complement Reverse Complement Forward 1 12 3.56306 Consensus sequence (original motif): DDCCAMAGTCHB Consensus sequence (reverse complement motif): VDGACTRTGGDD Alignment: VDGACTRTGGDD--------- GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 8 Motif name: Myc Consensus sequence (original motif): VGCACGTGGH Consensus sequence (reverse complement motif): DCCACGTGCV ************************************************************************ Best Matches for Motif ID 8 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 6 Mycn Original Motif Original Motif Backward 1 10 0 Consensus sequence (original motif): HSCACGTGGC Consensus sequence (reverse complement motif): GCCACGTGSD Alignment: HSCACGTGGC VGCACGTGGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 18 sscCCCGCGcs Reverse Complement Original Motif Forward 2 10 0.064853 Consensus sequence (original motif): BSCCCCGCGBS Consensus sequence (reverse complement motif): SBCGCGGGGSB Alignment: BSCCCCGCGBS -DCCACGTGCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 24 ssCCCCGCSssk Reverse Complement Original Motif Backward 2 10 0.0728588 Consensus sequence (original motif): SBCCCCGCCSBB Consensus sequence (reverse complement motif): BBSGGCGGGGBS Alignment: SBCCCCGCCSBB -DCCACGTGCV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 16 CTCF Original Motif Reverse Complement Forward 8 10 0.0754257 Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM Alignment: BMSMGCCYMCTKSTGGMHM -------VGCACGTGGH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Original Motif Backward 6 10 0.0888909 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: CACTGTGRTRTCACAGTGSWSCACT ----------DCCACGTGCV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 HNF4A Original Motif Reverse Complement Backward 1 10 0.0934488 Consensus sequence (original motif): RGGBCAAAGKYCA Consensus sequence (reverse complement motif): TGMYCTTTGBCCK Alignment: TGMYCTTTGBCCK ---VGCACGTGGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Reverse Complement Reverse Complement Backward 3 10 0.0940438 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: MGGTCAGGGTGACCTRDBHV --------DCCACGTGCV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 20 CagTGCTCCACTGTGgT Reverse Complement Reverse Complement Backward 7 10 0.0955234 Consensus sequence (original motif): CAGTGCTCCACTGTGBT Consensus sequence (reverse complement motif): ABCACAGTGGAGCACTG Alignment: ABCACAGTGGAGCACTG -DCCACGTGCV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 ESR2 Original Motif Original Motif Forward 5 10 0.0968598 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV Alignment: VHRGGTCABDBTGMCCTB ----VGCACGTGGH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 23 TGGAGCACTGTGACAcCACAGTGg Reverse Complement Original Motif Backward 11 10 0.0971125 Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA Alignment: TGGAGCACTGTGACAVCACAGTGG ----DCCACGTGCV---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 9 Motif name: ESR2 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV ************************************************************************ Best Matches for Motif ID 9 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 23 TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement Forward 7 18 0.0717757 Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA Alignment: CCACTGTGVTGTCACAGTGCTCCA ------VHRGGTCABDBTGMCCTB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement Backward 7 18 0.0815903 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: AGTGSWSCACTGTGAMAMCACAGTG -VHRGGTCABDBTGMCCTB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Original Motif Reverse Complement Backward 3 18 0.0916961 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: GGYGCTGTCCATGGTGCTGAA -VHRGGTCABDBTGMCCTB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Original Motif Original Motif Forward 4 17 0.511812 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: VDBHMAGGTCACCCTGACCY- ---VHRGGTCABDBTGMCCTB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 TgTGgTGTCACAGTGCTCC Original Motif Original Motif Forward 3 17 0.569595 Consensus sequence (original motif): TGTGGTGTCACAGTGCTCC Consensus sequence (reverse complement motif): GGAGCACTGTGACACCACA Alignment: TGTGGTGTCACAGTGCTCC- --VHRGGTCABDBTGMCCTB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 PPARGRXRA Original Motif Original Motif Forward 1 15 1.56699 Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB Alignment: BTRGGDCARAGGKCA--- VHRGGTCABDBTGMCCTB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 NR2F1 Original Motif Original Motif Backward 1 14 2.08921 Consensus sequence (original motif): TGAMCTTTGMMCYT Consensus sequence (reverse complement motif): AKGYYCAAAGRTCA Alignment: ----TGAMCTTTGMMCYT VHRGGTCABDBTGMCCTB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 15 Tcfcp2l1 Reverse Complement Original Motif Backward 1 14 2.09109 Consensus sequence (original motif): CCAGYYHVADCCRG Consensus sequence (reverse complement motif): CKGGDTBDMMCTGG Alignment: ----CCAGYYHVADCCRG BAGGYCABHBTGACCKHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 16 CTCF Original Motif Original Motif Forward 7 13 2.58379 Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM Alignment: YDRCCASYAGRKGGCRSYV----- ------VHRGGTCABDBTGMCCTB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 HNF4A Reverse Complement Original Motif Backward 1 13 2.59263 Consensus sequence (original motif): RGGBCAAAGKYCA Consensus sequence (reverse complement motif): TGMYCTTTGBCCK Alignment: -----RGGBCAAAGKYCA BAGGYCABHBTGACCKHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 10 Motif name: NR1H2RXRA Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT ************************************************************************ Best Matches for Motif ID 10 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Reverse Complement Reverse Complement Forward 4 17 0.0911991 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: GGYGCTGTCCATGGTGCTGAA ---GTTGACCTTTGACCTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 PPARGRXRA Original Motif Original Motif Forward 1 15 1.05945 Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB Alignment: BTRGGDCARAGGKCA-- AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Original Motif Original Motif Backward 8 13 2.08514 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: ----VDBHMAGGTCACCCTGACCY AAAGGTCAAAGGTCAAC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 27 AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif Forward 13 12 2.59961 Consensus sequence (original motif): AGTGCTCCACTGTGGTGTCACAGT Consensus sequence (reverse complement motif): ACTGTGACACCACAGTGGAGCACT Alignment: AGTGCTCCACTGTGGTGTCACAGT----- ------------AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 21 AmTGTGACACCACAGT Original Motif Reverse Complement Forward 5 12 2.59967 Consensus sequence (original motif): AMTGTGACACCACAGT Consensus sequence (reverse complement motif): ACTGTGGTGTCACART Alignment: ACTGTGGTGTCACART----- ----AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 20 CagTGCTCCACTGTGgT Original Motif Original Motif Backward 7 11 3.09731 Consensus sequence (original motif): CAGTGCTCCACTGTGBT Consensus sequence (reverse complement motif): ABCACAGTGGAGCACTG Alignment: ------CAGTGCTCCACTGTGBT AAAGGTCAAAGGTCAAC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 ESR2 Reverse Complement Reverse Complement Forward 9 10 3.56221 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV Alignment: BAGGYCABHBTGACCKHV------- --------GTTGACCTTTGACCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 13 MIZF Original Motif Original Motif Backward 1 10 3.5855 Consensus sequence (original motif): BAACGTCCGC Consensus sequence (reverse complement motif): GCGGACGTTV Alignment: -------BAACGTCCGC AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 NR2F1 Original Motif Reverse Complement Forward 6 9 4.07454 Consensus sequence (original motif): TGAMCTTTGMMCYT Consensus sequence (reverse complement motif): AKGYYCAAAGRTCA Alignment: AKGYYCAAAGRTCA-------- -----AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 23 TGGAGCACTGTGACAcCACAGTGg Reverse Complement Original Motif Backward 16 9 4.09479 Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA Alignment: --------TGGAGCACTGTGACAVCACAGTGG GTTGACCTTTGACCTTT--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 11 Motif name: NR4A2 Consensus sequence (original motif): AAGGTCAC Consensus sequence (reverse complement motif): GTGACCTT ************************************************************************ Best Matches for Motif ID 11 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 NR1H2RXRA Original Motif Original Motif Backward 9 8 0.0167759 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: AAAGGTCAAAGGTCAAC -AAGGTCAC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Original Motif Original Motif Forward 5 8 0.0195235 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: VDBHMAGGTCACCCTGACCY ----AAGGTCAC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 ESR2 Reverse Complement Reverse Complement Backward 2 8 0.0198372 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV Alignment: BAGGYCABHBTGACCKHV ---------GTGACCTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 PPARGRXRA Original Motif Original Motif Backward 7 8 0.0495607 Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB Alignment: BTRGGDCARAGGKCA -AAGGTCAC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Original Motif Original Motif Forward 7 8 0.0557243 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: CACTGTGRTRTCACAGTGSWSCACT ------AAGGTCAC----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 NR2F1 Original Motif Reverse Complement Backward 1 8 0.0564874 Consensus sequence (original motif): TGAMCTTTGMMCYT Consensus sequence (reverse complement motif): AKGYYCAAAGRTCA Alignment: AKGYYCAAAGRTCA ------AAGGTCAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Reverse Complement Reverse Complement Forward 5 8 0.0594649 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: GGYGCTGTCCATGGTGCTGAA ----GTGACCTT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 23 TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement Forward 8 8 0.060729 Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA Alignment: CCACTGTGVTGTCACAGTGCTCCA -------AAGGTCAC--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 21 AmTGTGACACCACAGT Original Motif Reverse Complement Backward 4 8 0.0645146 Consensus sequence (original motif): AMTGTGACACCACAGT Consensus sequence (reverse complement motif): ACTGTGGTGTCACART Alignment: ACTGTGGTGTCACART -----AAGGTCAC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 TgTGgTGTCACAGTGCTCC Original Motif Original Motif Backward 9 8 0.0695512 Consensus sequence (original motif): TGTGGTGTCACAGTGCTCC Consensus sequence (reverse complement motif): GGAGCACTGTGACACCACA Alignment: TGTGGTGTCACAGTGCTCC ---AAGGTCAC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 12 Motif name: RORA_1 Consensus sequence (original motif): AWVDAGGTCA Consensus sequence (reverse complement motif): TGACCTDVWT ************************************************************************ Best Matches for Motif ID 12 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 Esrrb Original Motif Original Motif Backward 1 10 0.029401 Consensus sequence (original motif): VBBYCAAGGTCA Consensus sequence (reverse complement motif): TGACCTTGMBBB Alignment: VBBYCAAGGTCA --AWVDAGGTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Reverse Complement Reverse Complement Backward 2 10 0.0417851 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: MGGTCAGGGTGACCTRDBHV ---------TGACCTDVWT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 NR1H2RXRA Original Motif Original Motif Forward 6 10 0.05425 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: AAAGGTCAAAGGTCAAC -----AWVDAGGTCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 NR2F1 Reverse Complement Original Motif Forward 5 10 0.0654808 Consensus sequence (original motif): TGAMCTTTGMMCYT Consensus sequence (reverse complement motif): AKGYYCAAAGRTCA Alignment: TGAMCTTTGMMCYT ----TGACCTDVWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 PPARGRXRA Original Motif Original Motif Backward 1 10 0.06668 Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB Alignment: BTRGGDCARAGGKCA -----AWVDAGGTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Original Motif Original Motif Forward 7 10 0.0755608 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: TTCAGCACCATGGACAGCKCC ------AWVDAGGTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 HNF4A Original Motif Original Motif Forward 4 10 0.0803396 Consensus sequence (original motif): RGGBCAAAGKYCA Consensus sequence (reverse complement motif): TGMYCTTTGBCCK Alignment: RGGBCAAAGKYCA ---AWVDAGGTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 TgTGgTGTCACAGTGCTCC Reverse Complement Reverse Complement Backward 1 10 0.0889306 Consensus sequence (original motif): TGTGGTGTCACAGTGCTCC Consensus sequence (reverse complement motif): GGAGCACTGTGACACCACA Alignment: GGAGCACTGTGACACCACA ---------TGACCTDVWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 25 wwCCAmAGTCmt Original Motif Original Motif Backward 2 10 0.09225 Consensus sequence (original motif): DDCCAMAGTCHB Consensus sequence (reverse complement motif): VDGACTRTGGDD Alignment: DDCCAMAGTCHB -AWVDAGGTCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 ESR2 Original Motif Reverse Complement Backward 4 10 0.0988214 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV Alignment: BAGGYCABHBTGACCKHV -----AWVDAGGTCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 13 Motif name: MIZF Consensus sequence (original motif): BAACGTCCGC Consensus sequence (reverse complement motif): GCGGACGTTV ************************************************************************ Best Matches for Motif ID 13 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 ESR2 Reverse Complement Reverse Complement Backward 1 10 0.0605777 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV Alignment: BAGGYCABHBTGACCKHV --------GCGGACGTTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Original Motif Original Motif Backward 8 10 0.0614567 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: VDBHMAGGTCACCCTGACCY ---BAACGTCCGC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 NR1H2RXRA Original Motif Original Motif Backward 1 10 0.0646071 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: AAAGGTCAAAGGTCAAC -------BAACGTCCGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 32 gCGCGCsCgsG Original Motif Original Motif Backward 2 10 0.0651598 Consensus sequence (original motif): GCGCGCSCGCG Consensus sequence (reverse complement motif): CGCGSGCGCGC Alignment: GCGCGCSCGCG BAACGTCCGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 16 CTCF Original Motif Reverse Complement Backward 10 10 0.0697767 Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM Alignment: BMSMGCCYMCTKSTGGMHM BAACGTCCGC--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Original Motif Reverse Complement Backward 3 10 0.0708149 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: GGYGCTGTCCATGGTGCTGAA ---------BAACGTCCGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 19 atactttggc Original Motif Original Motif Backward 1 10 0.0803571 Consensus sequence (original motif): ATACTTTGGC Consensus sequence (reverse complement motif): GCCAAAGTAT Alignment: ATACTTTGGC BAACGTCCGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 Myc Reverse Complement Original Motif Forward 2 9 0.555645 Consensus sequence (original motif): VGCACGTGGH Consensus sequence (reverse complement motif): DCCACGTGCV Alignment: VGCACGTGGH- -GCGGACGTTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 29 cCGCGGrCACG Reverse Complement Original Motif Forward 3 9 0.560913 Consensus sequence (original motif): CCGCGGRCACG Consensus sequence (reverse complement motif): CGTGKCCGCGG Alignment: CCGCGGRCACG- --GCGGACGTTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 6 Mycn Reverse Complement Original Motif Forward 2 9 0.561179 Consensus sequence (original motif): HSCACGTGGC Consensus sequence (reverse complement motif): GCCACGTGSD Alignment: HSCACGTGGC- -GCGGACGTTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 14 Motif name: PPARGRXRA Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB ************************************************************************ Best Matches for Motif ID 14 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 NR1H2RXRA Original Motif Original Motif Backward 3 15 0.0442974 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: AAAGGTCAAAGGTCAAC BTRGGDCARAGGKCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 ESR2 Original Motif Original Motif Backward 4 15 0.0602408 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV Alignment: VHRGGTCABDBTGMCCTB BTRGGDCARAGGKCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Original Motif Original Motif Backward 3 15 0.0723092 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: VDBHMAGGTCACCCTGACCY ---BTRGGDCARAGGKCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Original Motif Original Motif Forward 6 15 0.0741352 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: CACTGTGRTRTCACAGTGSWSCACT -----BTRGGDCARAGGKCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 16 CTCF Original Motif Original Motif Forward 2 15 0.0786357 Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM Alignment: YDRCCASYAGRKGGCRSYV -BTRGGDCARAGGKCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Original Motif Original Motif Forward 2 15 0.0796159 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: TTCAGCACCATGGACAGCKCC -BTRGGDCARAGGKCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 23 TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement Forward 7 15 0.0813414 Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA Alignment: CCACTGTGVTGTCACAGTGCTCCA ------BTRGGDCARAGGKCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 TgTGgTGTCACAGTGCTCC Original Motif Original Motif Forward 3 15 0.0818655 Consensus sequence (original motif): TGTGGTGTCACAGTGCTCC Consensus sequence (reverse complement motif): GGAGCACTGTGACACCACA Alignment: TGTGGTGTCACAGTGCTCC --BTRGGDCARAGGKCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 NR2F1 Original Motif Reverse Complement Forward 1 14 0.536521 Consensus sequence (original motif): TGAMCTTTGMMCYT Consensus sequence (reverse complement motif): AKGYYCAAAGRTCA Alignment: AKGYYCAAAGRTCA- BTRGGDCARAGGKCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 15 Tcfcp2l1 Reverse Complement Reverse Complement Backward 1 14 0.584465 Consensus sequence (original motif): CCAGYYHVADCCRG Consensus sequence (reverse complement motif): CKGGDTBDMMCTGG Alignment: -CKGGDTBDMMCTGG TGRCCTKTGHCCKAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 15 Motif name: Tcfcp2l1 Consensus sequence (original motif): CCAGYYHVADCCRG Consensus sequence (reverse complement motif): CKGGDTBDMMCTGG ************************************************************************ Best Matches for Motif ID 15 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Original Motif Reverse Complement Forward 4 14 0.0453398 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: MGGTCAGGGTGACCTRDBHV ---CCAGYYHVADCCRG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 16 CTCF Original Motif Original Motif Forward 4 14 0.0491111 Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM Alignment: YDRCCASYAGRKGGCRSYV ---CCAGYYHVADCCRG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 ESR2 Reverse Complement Original Motif Backward 1 14 0.0568174 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV Alignment: VHRGGTCABDBTGMCCTB ----CKGGDTBDMMCTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 PPARGRXRA Reverse Complement Reverse Complement Forward 2 14 0.0569399 Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB Alignment: TGRCCTKTGHCCKAB -CKGGDTBDMMCTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 20 CagTGCTCCACTGTGgT Reverse Complement Reverse Complement Forward 5 13 0.551995 Consensus sequence (original motif): CAGTGCTCCACTGTGBT Consensus sequence (reverse complement motif): ABCACAGTGGAGCACTG Alignment: ABCACAGTGGAGCACTG- ----CKGGDTBDMMCTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Original Motif Forward 14 12 1.05046 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: CACTGTGRTRTCACAGTGSWSCACT-- -------------CKGGDTBDMMCTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Reverse Complement Original Motif Backward 10 12 1.05111 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: --TTCAGCACCATGGACAGCKCC CKGGDTBDMMCTGG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 HNF4A Reverse Complement Reverse Complement Forward 2 12 1.05387 Consensus sequence (original motif): RGGBCAAAGKYCA Consensus sequence (reverse complement motif): TGMYCTTTGBCCK Alignment: TGMYCTTTGBCCK-- -CKGGDTBDMMCTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 26 CAcCACAGTGGAGCAct Reverse Complement Original Motif Forward 6 12 1.05541 Consensus sequence (original motif): CAHCACAGTGGAGCACT Consensus sequence (reverse complement motif): AGTGCTCCACTGTGDTG Alignment: CAHCACAGTGGAGCACT-- -----CKGGDTBDMMCTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 NR2F1 Reverse Complement Reverse Complement Backward 4 11 1.55702 Consensus sequence (original motif): TGAMCTTTGMMCYT Consensus sequence (reverse complement motif): AKGYYCAAAGRTCA Alignment: ---AKGYYCAAAGRTCA CKGGDTBDMMCTGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 16 Motif name: CTCF Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM ************************************************************************ Best Matches for Motif ID 16 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Original Motif Reverse Complement Forward 2 19 0.0655511 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: MGGTCAGGGTGACCTRDBHV -YDRCCASYAGRKGGCRSYV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 27 AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement Forward 7 18 0.563463 Consensus sequence (original motif): AGTGCTCCACTGTGGTGTCACAGT Consensus sequence (reverse complement motif): ACTGTGACACCACAGTGGAGCACT Alignment: ACTGTGACACCACAGTGGAGCACT- ------YDRCCASYAGRKGGCRSYV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement Backward 8 18 0.566264 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: -AGTGSWSCACTGTGAMAMCACAGTG BMSMGCCYMCTKSTGGMHM------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 20 CagTGCTCCACTGTGgT Original Motif Reverse Complement Backward 1 17 1.05236 Consensus sequence (original motif): CAGTGCTCCACTGTGBT Consensus sequence (reverse complement motif): ABCACAGTGGAGCACTG Alignment: --ABCACAGTGGAGCACTG YDRCCASYAGRKGGCRSYV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 26 CAcCACAGTGGAGCAct Original Motif Original Motif Backward 3 15 2.06184 Consensus sequence (original motif): CAHCACAGTGGAGCACT Consensus sequence (reverse complement motif): AGTGCTCCACTGTGDTG Alignment: ----CAHCACAGTGGAGCACT YDRCCASYAGRKGGCRSYV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 23 TGGAGCACTGTGACAcCACAGTGg Original Motif Original Motif Forward 10 15 2.06698 Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA Alignment: TGGAGCACTGTGACAVCACAGTGG---- ---------YDRCCASYAGRKGGCRSYV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 15 Tcfcp2l1 Original Motif Original Motif Backward 2 13 3.05613 Consensus sequence (original motif): CCAGYYHVADCCRG Consensus sequence (reverse complement motif): CKGGDTBDMMCTGG Alignment: ------CCAGYYHVADCCRG YDRCCASYAGRKGGCRSYV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 ESR2 Original Motif Original Motif Backward 6 13 3.06048 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV Alignment: ------VHRGGTCABDBTGMCCTB YDRCCASYAGRKGGCRSYV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 PPARGRXRA Original Motif Original Motif Backward 3 13 3.06565 Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB Alignment: ------BTRGGDCARAGGKCA YDRCCASYAGRKGGCRSYV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 24 ssCCCCGCSssk Reverse Complement Original Motif Forward 1 12 3.56185 Consensus sequence (original motif): SBCCCCGCCSBB Consensus sequence (reverse complement motif): BBSGGCGGGGBS Alignment: SBCCCCGCCSBB------- BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 17 Motif name: TgTGgTGTCACAGTGCTCC Consensus sequence (original motif): TGTGGTGTCACAGTGCTCC Consensus sequence (reverse complement motif): GGAGCACTGTGACACCACA ************************************************************************ Best Matches for Motif ID 17 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 23 TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement Forward 5 19 0 Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA Alignment: CCACTGTGVTGTCACAGTGCTCCA ----TGTGGTGTCACAGTGCTCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Original Motif Original Motif Backward 4 19 0.0217259 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: CACTGTGRTRTCACAGTGSWSCACT ---TGTGGTGTCACAGTGCTCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 27 AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement Forward 3 19 0.074816 Consensus sequence (original motif): AGTGCTCCACTGTGGTGTCACAGT Consensus sequence (reverse complement motif): ACTGTGACACCACAGTGGAGCACT Alignment: ACTGTGACACCACAGTGGAGCACT --TGTGGTGTCACAGTGCTCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Original Motif Original Motif Backward 1 19 0.0857262 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: VDBHMAGGTCACCCTGACCY -TGTGGTGTCACAGTGCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 ESR2 Original Motif Original Motif Backward 2 17 1.08001 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV Alignment: --VHRGGTCABDBTGMCCTB TGTGGTGTCACAGTGCTCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 20 CagTGCTCCACTGTGgT Original Motif Original Motif Forward 1 17 1.08847 Consensus sequence (original motif): CAGTGCTCCACTGTGBT Consensus sequence (reverse complement motif): ABCACAGTGGAGCACTG Alignment: CAGTGCTCCACTGTGBT-- TGTGGTGTCACAGTGCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 21 AmTGTGACACCACAGT Reverse Complement Reverse Complement Forward 1 16 1.59452 Consensus sequence (original motif): AMTGTGACACCACAGT Consensus sequence (reverse complement motif): ACTGTGGTGTCACART Alignment: ACTGTGGTGTCACART--- GGAGCACTGTGACACCACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 PPARGRXRA Reverse Complement Original Motif Forward 1 15 2.10007 Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB Alignment: BTRGGDCARAGGKCA---- GGAGCACTGTGACACCACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 26 CAcCACAGTGGAGCAct Original Motif Original Motif Backward 4 14 2.57554 Consensus sequence (original motif): CAHCACAGTGGAGCACT Consensus sequence (reverse complement motif): AGTGCTCCACTGTGDTG Alignment: -----CAHCACAGTGGAGCACT TGTGGTGTCACAGTGCTCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 Esrrb Reverse Complement Original Motif Backward 1 12 3.58914 Consensus sequence (original motif): VBBYCAAGGTCA Consensus sequence (reverse complement motif): TGACCTTGMBBB Alignment: -------VBBYCAAGGTCA GGAGCACTGTGACACCACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 18 Motif name: sscCCCGCGcs Consensus sequence (original motif): BSCCCCGCGBS Consensus sequence (reverse complement motif): SBCGCGGGGSB ************************************************************************ Best Matches for Motif ID 18 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 24 ssCCCCGCSssk Original Motif Original Motif Forward 1 11 0 Consensus sequence (original motif): SBCCCCGCCSBB Consensus sequence (reverse complement motif): BBSGGCGGGGBS Alignment: SBCCCCGCCSBB BSCCCCGCGBS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 32 gCGCGCsCgsG Reverse Complement Reverse Complement Forward 1 11 0.0417227 Consensus sequence (original motif): GCGCGCSCGCG Consensus sequence (reverse complement motif): CGCGSGCGCGC Alignment: CGCGSGCGCGC SBCGCGGGGSB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 28 ssGCkTGCssk Original Motif Original Motif Forward 1 11 0.0523123 Consensus sequence (original motif): SSGCKTGCSSK Consensus sequence (reverse complement motif): YSSGCAYGCSS Alignment: SSGCKTGCSSK BSCCCCGCGBS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 16 CTCF Reverse Complement Original Motif Backward 7 11 0.0564004 Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM Alignment: YDRCCASYAGRKGGCRSYV --SBCGCGGGGSB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Original Motif Reverse Complement Forward 1 11 0.0734979 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: MGGTCAGGGTGACCTRDBHV BSCCCCGCGBS--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 29 cCGCGGrCACG Original Motif Original Motif Forward 1 11 0.0757081 Consensus sequence (original motif): CCGCGGRCACG Consensus sequence (reverse complement motif): CGTGKCCGCGG Alignment: CCGCGGRCACG BSCCCCGCGBS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Original Motif Original Motif Forward 11 11 0.0758097 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: TTCAGCACCATGGACAGCKCC ----------BSCCCCGCGBS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 Myc Reverse Complement Original Motif Backward 1 10 0.535606 Consensus sequence (original motif): VGCACGTGGH Consensus sequence (reverse complement motif): DCCACGTGCV Alignment: -VGCACGTGGH SBCGCGGGGSB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 6 Mycn Reverse Complement Original Motif Backward 1 10 0.536235 Consensus sequence (original motif): HSCACGTGGC Consensus sequence (reverse complement motif): GCCACGTGSD Alignment: -HSCACGTGGC SBCGCGGGGSB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 33 srACyCCGAyr Reverse Complement Reverse Complement Forward 2 10 0.571697 Consensus sequence (original motif): SRACYCCGAYR Consensus sequence (reverse complement motif): KKTCGGKGTKS Alignment: KKTCGGKGTKS- -SBCGCGGGGSB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 19 Motif name: atactttggc Consensus sequence (original motif): ATACTTTGGC Consensus sequence (reverse complement motif): GCCAAAGTAT ************************************************************************ Best Matches for Motif ID 19 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 25 wwCCAmAGTCmt Reverse Complement Original Motif Forward 2 10 0.0215909 Consensus sequence (original motif): DDCCAMAGTCHB Consensus sequence (reverse complement motif): VDGACTRTGGDD Alignment: DDCCAMAGTCHB -GCCAAAGTAT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 30 taaacgatgcc Reverse Complement Reverse Complement Backward 2 10 0.0375 Consensus sequence (original motif): TAAACGATGCC Consensus sequence (reverse complement motif): GGCATCGTTTA Alignment: GGCATCGTTTA GCCAAAGTAT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 NR1H2RXRA Original Motif Reverse Complement Backward 4 10 0.0395 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: GTTGACCTTTGACCTTT ----ATACTTTGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 TgTGgTGTCACAGTGCTCC Original Motif Reverse Complement Backward 4 10 0.0472222 Consensus sequence (original motif): TGTGGTGTCACAGTGCTCC Consensus sequence (reverse complement motif): GGAGCACTGTGACACCACA Alignment: GGAGCACTGTGACACCACA ------ATACTTTGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Original Motif Forward 10 10 0.0474206 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: CACTGTGRTRTCACAGTGSWSCACT ---------GCCAAAGTAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 HNF4A Original Motif Reverse Complement Forward 3 10 0.0483209 Consensus sequence (original motif): RGGBCAAAGKYCA Consensus sequence (reverse complement motif): TGMYCTTTGBCCK Alignment: TGMYCTTTGBCCK --ATACTTTGGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 NR2F1 Original Motif Original Motif Forward 2 10 0.0490385 Consensus sequence (original motif): TGAMCTTTGMMCYT Consensus sequence (reverse complement motif): AKGYYCAAAGRTCA Alignment: TGAMCTTTGMMCYT -ATACTTTGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 23 TGGAGCACTGTGACAcCACAGTGg Reverse Complement Reverse Complement Backward 5 10 0.0493243 Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA Alignment: CCACTGTGVTGTCACAGTGCTCCA ----------GCCAAAGTAT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 27 AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Reverse Complement Forward 9 10 0.0498239 Consensus sequence (original motif): AGTGCTCCACTGTGGTGTCACAGT Consensus sequence (reverse complement motif): ACTGTGACACCACAGTGGAGCACT Alignment: ACTGTGACACCACAGTGGAGCACT --------GCCAAAGTAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 26 CAcCACAGTGGAGCAct Original Motif Reverse Complement Forward 7 10 0.0527344 Consensus sequence (original motif): CAHCACAGTGGAGCACT Consensus sequence (reverse complement motif): AGTGCTCCACTGTGDTG Alignment: AGTGCTCCACTGTGDTG ------ATACTTTGGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 20 Motif name: CagTGCTCCACTGTGgT Consensus sequence (original motif): CAGTGCTCCACTGTGBT Consensus sequence (reverse complement motif): ABCACAGTGGAGCACTG ************************************************************************ Best Matches for Motif ID 20 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 16 CTCF Original Motif Reverse Complement Backward 1 17 0.0957051 Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM Alignment: BMSMGCCYMCTKSTGGMHM --CAGTGCTCCACTGTGBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Reverse Complement Original Motif Forward 2 17 0.0975871 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: TTCAGCACCATGGACAGCKCC -ABCACAGTGGAGCACTG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 TgTGgTGTCACAGTGCTCC Original Motif Original Motif Backward 3 17 0.0980868 Consensus sequence (original motif): TGTGGTGTCACAGTGCTCC Consensus sequence (reverse complement motif): GGAGCACTGTGACACCACA Alignment: TGTGGTGTCACAGTGCTCC CAGTGCTCCACTGTGBT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 27 AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif Backward 3 17 0.099784 Consensus sequence (original motif): AGTGCTCCACTGTGGTGTCACAGT Consensus sequence (reverse complement motif): ACTGTGACACCACAGTGGAGCACT Alignment: AGTGCTCCACTGTGGTGTCACAGT -----ABCACAGTGGAGCACTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement Forward 6 17 0.104226 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: AGTGSWSCACTGTGAMAMCACAGTG -----ABCACAGTGGAGCACTG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 23 TGGAGCACTGTGACAcCACAGTGg Reverse Complement Original Motif Backward 5 17 0.107548 Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA Alignment: TGGAGCACTGTGACAVCACAGTGG ---ABCACAGTGGAGCACTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 26 CAcCACAGTGGAGCAct Reverse Complement Original Motif Forward 2 16 0.5 Consensus sequence (original motif): CAHCACAGTGGAGCACT Consensus sequence (reverse complement motif): AGTGCTCCACTGTGDTG Alignment: CAHCACAGTGGAGCACT- -ABCACAGTGGAGCACTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 21 AmTGTGACACCACAGT Original Motif Original Motif Backward 1 16 0.607943 Consensus sequence (original motif): AMTGTGACACCACAGT Consensus sequence (reverse complement motif): ACTGTGGTGTCACART Alignment: -AMTGTGACACCACAGT CAGTGCTCCACTGTGBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 15 Tcfcp2l1 Reverse Complement Reverse Complement Backward 2 13 2.1063 Consensus sequence (original motif): CCAGYYHVADCCRG Consensus sequence (reverse complement motif): CKGGDTBDMMCTGG Alignment: ----CKGGDTBDMMCTGG ABCACAGTGGAGCACTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 25 wwCCAmAGTCmt Reverse Complement Reverse Complement Forward 1 12 2.58308 Consensus sequence (original motif): DDCCAMAGTCHB Consensus sequence (reverse complement motif): VDGACTRTGGDD Alignment: VDGACTRTGGDD----- ABCACAGTGGAGCACTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 21 Motif name: AmTGTGACACCACAGT Consensus sequence (original motif): AMTGTGACACCACAGT Consensus sequence (reverse complement motif): ACTGTGGTGTCACART ************************************************************************ Best Matches for Motif ID 21 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 27 AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement Forward 1 16 0 Consensus sequence (original motif): AGTGCTCCACTGTGGTGTCACAGT Consensus sequence (reverse complement motif): ACTGTGACACCACAGTGGAGCACT Alignment: ACTGTGACACCACAGTGGAGCACT AMTGTGACACCACAGT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 23 TGGAGCACTGTGACAcCACAGTGg Reverse Complement Reverse Complement Forward 3 16 0.00171837 Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA Alignment: CCACTGTGVTGTCACAGTGCTCCA --ACTGTGGTGTCACART------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Original Motif Forward 2 16 0.0197279 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: CACTGTGRTRTCACAGTGSWSCACT -ACTGTGGTGTCACART-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 TgTGgTGTCACAGTGCTCC Reverse Complement Reverse Complement Backward 4 16 0.0950937 Consensus sequence (original motif): TGTGGTGTCACAGTGCTCC Consensus sequence (reverse complement motif): GGAGCACTGTGACACCACA Alignment: GGAGCACTGTGACACCACA ACTGTGGTGTCACART--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 20 CagTGCTCCACTGTGgT Original Motif Original Motif Backward 1 16 0.0988969 Consensus sequence (original motif): CAGTGCTCCACTGTGBT Consensus sequence (reverse complement motif): ABCACAGTGGAGCACTG Alignment: CAGTGCTCCACTGTGBT -AMTGTGACACCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 26 CAcCACAGTGGAGCAct Original Motif Reverse Complement Backward 2 16 0.101875 Consensus sequence (original motif): CAHCACAGTGGAGCACT Consensus sequence (reverse complement motif): AGTGCTCCACTGTGDTG Alignment: AGTGCTCCACTGTGDTG AMTGTGACACCACAGT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Original Motif Reverse Complement Backward 6 15 0.595092 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: -MGGTCAGGGTGACCTRDBHV AMTGTGACACCACAGT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Reverse Complement Reverse Complement Backward 8 14 1.1019 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: --GGYGCTGTCCATGGTGCTGAA ACTGTGGTGTCACART------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 ESR2 Original Motif Reverse Complement Backward 7 12 2.07799 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV Alignment: ----BAGGYCABHBTGACCKHV AMTGTGACACCACAGT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 NR1H2RXRA Original Motif Reverse Complement Backward 6 12 2.10225 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: ----GTTGACCTTTGACCTTT AMTGTGACACCACAGT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 22 Motif name: CACTGTGrYrtCACAGTGswsCAcT Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG ************************************************************************ Best Matches for Motif ID 22 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 27 AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement Backward 1 24 0.0247168 Consensus sequence (original motif): AGTGCTCCACTGTGGTGTCACAGT Consensus sequence (reverse complement motif): ACTGTGACACCACAGTGGAGCACT Alignment: -ACTGTGACACCACAGTGGAGCACT CACTGTGRTRTCACAGTGSWSCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 23 TGGAGCACTGTGACAcCACAGTGg Reverse Complement Original Motif Backward 2 23 0.500966 Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA Alignment: --TGGAGCACTGTGACAVCACAGTGG AGTGSWSCACTGTGAMAMCACAGTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Original Motif Reverse Complement Forward 3 18 3.08246 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: MGGTCAGGGTGACCTRDBHV------- --CACTGTGRTRTCACAGTGSWSCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 16 CTCF Reverse Complement Reverse Complement Forward 2 18 3.08842 Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM Alignment: BMSMGCCYMCTKSTGGMHM------- -AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 TgTGgTGTCACAGTGCTCC Original Motif Reverse Complement Forward 2 18 3.08984 Consensus sequence (original motif): TGTGGTGTCACAGTGCTCC Consensus sequence (reverse complement motif): GGAGCACTGTGACACCACA Alignment: GGAGCACTGTGACACCACA------- -CACTGTGRTRTCACAGTGSWSCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 26 CAcCACAGTGGAGCAct Original Motif Original Motif Backward 1 17 3.52449 Consensus sequence (original motif): CAHCACAGTGGAGCACT Consensus sequence (reverse complement motif): AGTGCTCCACTGTGDTG Alignment: --------CAHCACAGTGGAGCACT CACTGTGRTRTCACAGTGSWSCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 20 CagTGCTCCACTGTGgT Reverse Complement Original Motif Backward 2 16 4.02265 Consensus sequence (original motif): CAGTGCTCCACTGTGBT Consensus sequence (reverse complement motif): ABCACAGTGGAGCACTG Alignment: ---------CAGTGCTCCACTGTGBT AGTGSWSCACTGTGAMAMCACAGTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 ESR2 Reverse Complement Original Motif Forward 6 13 5.58301 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV Alignment: VHRGGTCABDBTGMCCTB------------ -----AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 21 AmTGTGACACCACAGT Original Motif Reverse Complement Forward 4 13 5.58597 Consensus sequence (original motif): AMTGTGACACCACAGT Consensus sequence (reverse complement motif): ACTGTGGTGTCACART Alignment: ACTGTGGTGTCACART------------ ---CACTGTGRTRTCACAGTGSWSCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Original Motif Reverse Complement Backward 10 12 6.07826 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: -------------GGYGCTGTCCATGGTGCTGAA CACTGTGRTRTCACAGTGSWSCACT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 23 Motif name: TGGAGCACTGTGACAcCACAGTGg Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA ************************************************************************ Best Matches for Motif ID 23 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Original Motif Forward 3 23 0.0136536 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: CACTGTGRTRTCACAGTGSWSCACT- --CCACTGTGVTGTCACAGTGCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 27 AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Reverse Complement Backward 3 22 0.560082 Consensus sequence (original motif): AGTGCTCCACTGTGGTGTCACAGT Consensus sequence (reverse complement motif): ACTGTGACACCACAGTGGAGCACT Alignment: --ACTGTGACACCACAGTGGAGCACT CCACTGTGVTGTCACAGTGCTCCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 ESR2 Original Motif Reverse Complement Backward 1 18 2.5833 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV Alignment: ------BAGGYCABHBTGACCKHV TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Reverse Complement Reverse Complement Forward 4 17 3.10239 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: MGGTCAGGGTGACCTRDBHV------- ---CCACTGTGVTGTCACAGTGCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 TgTGgTGTCACAGTGCTCC Reverse Complement Reverse Complement Forward 4 16 3.56015 Consensus sequence (original motif): TGTGGTGTCACAGTGCTCC Consensus sequence (reverse complement motif): GGAGCACTGTGACACCACA Alignment: GGAGCACTGTGACACCACA-------- ---CCACTGTGVTGTCACAGTGCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 20 CagTGCTCCACTGTGgT Reverse Complement Reverse Complement Forward 2 16 3.58845 Consensus sequence (original motif): CAGTGCTCCACTGTGBT Consensus sequence (reverse complement motif): ABCACAGTGGAGCACTG Alignment: ABCACAGTGGAGCACTG-------- -CCACTGTGVTGTCACAGTGCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 26 CAcCACAGTGGAGCAct Original Motif Reverse Complement Forward 3 15 4.07113 Consensus sequence (original motif): CAHCACAGTGGAGCACT Consensus sequence (reverse complement motif): AGTGCTCCACTGTGDTG Alignment: AGTGCTCCACTGTGDTG--------- --TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 16 CTCF Original Motif Original Motif Backward 5 15 4.10183 Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM Alignment: ---------YDRCCASYAGRKGGCRSYV TGGAGCACTGTGACAVCACAGTGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 PPARGRXRA Original Motif Original Motif Forward 2 14 4.60325 Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB Alignment: BTRGGDCARAGGKCA---------- -TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Original Motif Original Motif Backward 9 13 5.08033 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: -----------TTCAGCACCATGGACAGCKCC TGGAGCACTGTGACAVCACAGTGG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 24 Motif name: ssCCCCGCSssk Consensus sequence (original motif): SBCCCCGCCSBB Consensus sequence (reverse complement motif): BBSGGCGGGGBS ************************************************************************ Best Matches for Motif ID 24 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Reverse Complement Reverse Complement Backward 2 12 0.063076 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: MGGTCAGGGTGACCTRDBHV -------BBSGGCGGGGBS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 16 CTCF Reverse Complement Original Motif Forward 2 12 0.0642087 Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM Alignment: YDRCCASYAGRKGGCRSYV -BBSGGCGGGGBS------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 PPARGRXRA Original Motif Reverse Complement Forward 2 12 0.0671548 Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB Alignment: TGRCCTKTGHCCKAB -SBCCCCGCCSBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 ESR2 Original Motif Reverse Complement Forward 2 12 0.0734481 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV Alignment: BAGGYCABHBTGACCKHV -SBCCCCGCCSBB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Reverse Complement Original Motif Backward 10 12 0.0751084 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: TTCAGCACCATGGACAGCKCC BBSGGCGGGGBS--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 18 sscCCCGCGcs Original Motif Original Motif Forward 1 11 0.5 Consensus sequence (original motif): BSCCCCGCGBS Consensus sequence (reverse complement motif): SBCGCGGGGSB Alignment: BSCCCCGCGBS- SBCCCCGCCSBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 32 gCGCGCsCgsG Reverse Complement Reverse Complement Backward 1 11 0.548902 Consensus sequence (original motif): GCGCGCSCGCG Consensus sequence (reverse complement motif): CGCGSGCGCGC Alignment: -CGCGSGCGCGC BBSGGCGGGGBS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 28 ssGCkTGCssk Original Motif Original Motif Forward 1 11 0.550852 Consensus sequence (original motif): SSGCKTGCSSK Consensus sequence (reverse complement motif): YSSGCAYGCSS Alignment: SSGCKTGCSSK- SBCCCCGCCSBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 29 cCGCGGrCACG Reverse Complement Reverse Complement Forward 1 11 0.56634 Consensus sequence (original motif): CCGCGGRCACG Consensus sequence (reverse complement motif): CGTGKCCGCGG Alignment: CGTGKCCGCGG- BBSGGCGGGGBS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 Esrrb Reverse Complement Original Motif Forward 2 11 0.571364 Consensus sequence (original motif): VBBYCAAGGTCA Consensus sequence (reverse complement motif): TGACCTTGMBBB Alignment: VBBYCAAGGTCA- -BBSGGCGGGGBS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 25 Motif name: wwCCAmAGTCmt Consensus sequence (original motif): DDCCAMAGTCHB Consensus sequence (reverse complement motif): VDGACTRTGGDD ************************************************************************ Best Matches for Motif ID 25 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Original Motif Original Motif Backward 6 12 0.0263648 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: CACTGTGRTRTCACAGTGSWSCACT --------DDCCAMAGTCHB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 20 CagTGCTCCACTGTGgT Reverse Complement Reverse Complement Backward 6 12 0.0282828 Consensus sequence (original motif): CAGTGCTCCACTGTGBT Consensus sequence (reverse complement motif): ABCACAGTGGAGCACTG Alignment: ABCACAGTGGAGCACTG VDGACTRTGGDD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 26 CAcCACAGTGGAGCAct Reverse Complement Reverse Complement Forward 6 12 0.0291095 Consensus sequence (original motif): CAHCACAGTGGAGCACT Consensus sequence (reverse complement motif): AGTGCTCCACTGTGDTG Alignment: AGTGCTCCACTGTGDTG -----VDGACTRTGGDD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 27 AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif Forward 6 12 0.0301919 Consensus sequence (original motif): AGTGCTCCACTGTGGTGTCACAGT Consensus sequence (reverse complement motif): ACTGTGACACCACAGTGGAGCACT Alignment: AGTGCTCCACTGTGGTGTCACAGT -----VDGACTRTGGDD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 HNF4A Original Motif Original Motif Forward 2 12 0.032442 Consensus sequence (original motif): RGGBCAAAGKYCA Consensus sequence (reverse complement motif): TGMYCTTTGBCCK Alignment: RGGBCAAAGKYCA -DDCCAMAGTCHB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 23 TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement Forward 4 12 0.0360702 Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA Alignment: CCACTGTGVTGTCACAGTGCTCCA ---DDCCAMAGTCHB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Original Motif Reverse Complement Forward 4 12 0.0391228 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: GGYGCTGTCCATGGTGCTGAA ---DDCCAMAGTCHB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 TgTGgTGTCACAGTGCTCC Original Motif Original Motif Backward 3 12 0.0393782 Consensus sequence (original motif): TGTGGTGTCACAGTGCTCC Consensus sequence (reverse complement motif): GGAGCACTGTGACACCACA Alignment: TGTGGTGTCACAGTGCTCC -----DDCCAMAGTCHB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Original Motif Original Motif Backward 9 12 0.0407304 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: VDBHMAGGTCACCCTGACCY DDCCAMAGTCHB-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 NR1H2RXRA Original Motif Original Motif Backward 2 12 0.0463384 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: AAAGGTCAAAGGTCAAC ----DDCCAMAGTCHB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 26 Motif name: CAcCACAGTGGAGCAct Consensus sequence (original motif): CAHCACAGTGGAGCACT Consensus sequence (reverse complement motif): AGTGCTCCACTGTGDTG ************************************************************************ Best Matches for Motif ID 26 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 27 AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement Forward 8 17 0.00742502 Consensus sequence (original motif): AGTGCTCCACTGTGGTGTCACAGT Consensus sequence (reverse complement motif): ACTGTGACACCACAGTGGAGCACT Alignment: ACTGTGACACCACAGTGGAGCACT -------CAHCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Original Motif Original Motif Forward 9 17 0.0456803 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: CACTGTGRTRTCACAGTGSWSCACT --------CAHCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Original Motif Original Motif Forward 3 17 0.0894884 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: TTCAGCACCATGGACAGCKCC --CAHCACAGTGGAGCACT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 TgTGgTGTCACAGTGCTCC Original Motif Reverse Complement Backward 2 17 0.0962536 Consensus sequence (original motif): TGTGGTGTCACAGTGCTCC Consensus sequence (reverse complement motif): GGAGCACTGTGACACCACA Alignment: GGAGCACTGTGACACCACA -CAHCACAGTGGAGCACT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 16 CTCF Original Motif Original Motif Forward 2 17 0.0978126 Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM Alignment: YDRCCASYAGRKGGCRSYV -CAHCACAGTGGAGCACT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 23 TGGAGCACTGTGACAcCACAGTGg Reverse Complement Reverse Complement Backward 3 17 0.106708 Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA Alignment: CCACTGTGVTGTCACAGTGCTCCA -----AGTGCTCCACTGTGDTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 20 CagTGCTCCACTGTGgT Original Motif Reverse Complement Forward 2 16 0.5 Consensus sequence (original motif): CAGTGCTCCACTGTGBT Consensus sequence (reverse complement motif): ABCACAGTGGAGCACTG Alignment: ABCACAGTGGAGCACTG- -CAHCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 21 AmTGTGACACCACAGT Original Motif Reverse Complement Forward 1 16 0.610921 Consensus sequence (original motif): AMTGTGACACCACAGT Consensus sequence (reverse complement motif): ACTGTGGTGTCACART Alignment: ACTGTGGTGTCACART- CAHCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 25 wwCCAmAGTCmt Reverse Complement Reverse Complement Backward 1 12 2.5839 Consensus sequence (original motif): DDCCAMAGTCHB Consensus sequence (reverse complement motif): VDGACTRTGGDD Alignment: -----VDGACTRTGGDD AGTGCTCCACTGTGDTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 HNF4A Reverse Complement Reverse Complement Backward 2 12 2.60332 Consensus sequence (original motif): RGGBCAAAGKYCA Consensus sequence (reverse complement motif): TGMYCTTTGBCCK Alignment: -----TGMYCTTTGBCCK AGTGCTCCACTGTGDTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 27 Motif name: AgTGCTCCACTGTGgTGTCACAgT Consensus sequence (original motif): AGTGCTCCACTGTGGTGTCACAGT Consensus sequence (reverse complement motif): ACTGTGACACCACAGTGGAGCACT ************************************************************************ Best Matches for Motif ID 27 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement Forward 2 24 0.0409586 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: AGTGSWSCACTGTGAMAMCACAGTG -AGTGCTCCACTGTGGTGTCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 23 TGGAGCACTGTGACAcCACAGTGg Reverse Complement Reverse Complement Forward 3 22 1.06364 Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA Alignment: CCACTGTGVTGTCACAGTGCTCCA-- --ACTGTGACACCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Reverse Complement Original Motif Forward 3 19 2.59599 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: TTCAGCACCATGGACAGCKCC----- --ACTGTGACACCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 TgTGgTGTCACAGTGCTCC Reverse Complement Reverse Complement Backward 2 18 3.10123 Consensus sequence (original motif): TGTGGTGTCACAGTGCTCC Consensus sequence (reverse complement motif): GGAGCACTGTGACACCACA Alignment: ------GGAGCACTGTGACACCACA ACTGTGACACCACAGTGGAGCACT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 16 CTCF Original Motif Reverse Complement Backward 2 18 3.10186 Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM Alignment: ------BMSMGCCYMCTKSTGGMHM AGTGCTCCACTGTGGTGTCACAGT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 26 CAcCACAGTGGAGCAct Reverse Complement Original Motif Forward 1 17 3.50248 Consensus sequence (original motif): CAHCACAGTGGAGCACT Consensus sequence (reverse complement motif): AGTGCTCCACTGTGDTG Alignment: CAHCACAGTGGAGCACT------- ACTGTGACACCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 20 CagTGCTCCACTGTGgT Reverse Complement Reverse Complement Backward 2 16 4 Consensus sequence (original motif): CAGTGCTCCACTGTGBT Consensus sequence (reverse complement motif): ABCACAGTGGAGCACTG Alignment: --------ABCACAGTGGAGCACTG ACTGTGACACCACAGTGGAGCACT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 21 AmTGTGACACCACAGT Original Motif Reverse Complement Forward 1 16 4.0041 Consensus sequence (original motif): AMTGTGACACCACAGT Consensus sequence (reverse complement motif): ACTGTGGTGTCACART Alignment: ACTGTGGTGTCACART-------- AGTGCTCCACTGTGGTGTCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Reverse Complement Reverse Complement Forward 6 15 4.59996 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: MGGTCAGGGTGACCTRDBHV--------- -----ACTGTGACACCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 ESR2 Original Motif Original Motif Backward 7 12 6.08041 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV Alignment: ------------VHRGGTCABDBTGMCCTB AGTGCTCCACTGTGGTGTCACAGT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 28 Motif name: ssGCkTGCssk Consensus sequence (original motif): SSGCKTGCSSK Consensus sequence (reverse complement motif): YSSGCAYGCSS ************************************************************************ Best Matches for Motif ID 28 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 32 gCGCGCsCgsG Original Motif Original Motif Backward 1 11 0.00456539 Consensus sequence (original motif): GCGCGCSCGCG Consensus sequence (reverse complement motif): CGCGSGCGCGC Alignment: GCGCGCSCGCG SSGCKTGCSSK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 24 ssCCCCGCSssk Reverse Complement Reverse Complement Forward 2 11 0.0176347 Consensus sequence (original motif): SBCCCCGCCSBB Consensus sequence (reverse complement motif): BBSGGCGGGGBS Alignment: BBSGGCGGGGBS -YSSGCAYGCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 18 sscCCCGCGcs Reverse Complement Reverse Complement Backward 1 11 0.0190954 Consensus sequence (original motif): BSCCCCGCGBS Consensus sequence (reverse complement motif): SBCGCGGGGSB Alignment: SBCGCGGGGSB YSSGCAYGCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 29 cCGCGGrCACG Original Motif Original Motif Backward 1 11 0.0276515 Consensus sequence (original motif): CCGCGGRCACG Consensus sequence (reverse complement motif): CGTGKCCGCGG Alignment: CCGCGGRCACG SSGCKTGCSSK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 16 CTCF Original Motif Original Motif Forward 8 11 0.0349439 Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM Alignment: YDRCCASYAGRKGGCRSYV -------SSGCKTGCSSK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 Esrrb Reverse Complement Original Motif Forward 2 11 0.0358701 Consensus sequence (original motif): VBBYCAAGGTCA Consensus sequence (reverse complement motif): TGACCTTGMBBB Alignment: VBBYCAAGGTCA -YSSGCAYGCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 ESR2 Reverse Complement Original Motif Backward 3 11 0.0379074 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV Alignment: VHRGGTCABDBTGMCCTB -----YSSGCAYGCSS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Reverse Complement Original Motif Backward 10 11 0.0409322 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: TTCAGCACCATGGACAGCKCC -YSSGCAYGCSS--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 PPARGRXRA Reverse Complement Original Motif Forward 3 11 0.041419 Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB Alignment: BTRGGDCARAGGKCA --YSSGCAYGCSS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 HNF4A Reverse Complement Original Motif Forward 3 11 0.0437981 Consensus sequence (original motif): RGGBCAAAGKYCA Consensus sequence (reverse complement motif): TGMYCTTTGBCCK Alignment: RGGBCAAAGKYCA --YSSGCAYGCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 29 Motif name: cCGCGGrCACG Consensus sequence (original motif): CCGCGGRCACG Consensus sequence (reverse complement motif): CGTGKCCGCGG ************************************************************************ Best Matches for Motif ID 29 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 32 gCGCGCsCgsG Original Motif Original Motif Backward 1 11 0.010473 Consensus sequence (original motif): GCGCGCSCGCG Consensus sequence (reverse complement motif): CGCGSGCGCGC Alignment: GCGCGCSCGCG CCGCGGRCACG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Original Motif Original Motif Backward 4 11 0.0484441 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: TTCAGCACCATGGACAGCKCC -------CCGCGGRCACG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Reverse Complement Reverse Complement Backward 3 11 0.0486581 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: MGGTCAGGGTGACCTRDBHV -------CGTGKCCGCGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 28 ssGCkTGCssk Original Motif Original Motif Backward 1 11 0.0503056 Consensus sequence (original motif): SSGCKTGCSSK Consensus sequence (reverse complement motif): YSSGCAYGCSS Alignment: SSGCKTGCSSK CCGCGGRCACG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 24 ssCCCCGCSssk Reverse Complement Reverse Complement Backward 2 11 0.055777 Consensus sequence (original motif): SBCCCCGCCSBB Consensus sequence (reverse complement motif): BBSGGCGGGGBS Alignment: BBSGGCGGGGBS CGTGKCCGCGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 16 CTCF Original Motif Original Motif Forward 8 11 0.0588663 Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM Alignment: YDRCCASYAGRKGGCRSYV -------CCGCGGRCACG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 PPARGRXRA Reverse Complement Reverse Complement Backward 2 11 0.0629476 Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB Alignment: TGRCCTKTGHCCKAB ---CGTGKCCGCGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 18 sscCCCGCGcs Original Motif Original Motif Forward 1 11 0.0651451 Consensus sequence (original motif): BSCCCCGCGBS Consensus sequence (reverse complement motif): SBCGCGGGGSB Alignment: BSCCCCGCGBS CCGCGGRCACG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 ESR2 Reverse Complement Reverse Complement Forward 9 10 0.551597 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV Alignment: BAGGYCABHBTGACCKHV- --------CGTGKCCGCGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 Myc Reverse Complement Original Motif Forward 2 9 1.0488 Consensus sequence (original motif): VGCACGTGGH Consensus sequence (reverse complement motif): DCCACGTGCV Alignment: VGCACGTGGH-- -CGTGKCCGCGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 30 Motif name: taaacgatgcc Consensus sequence (original motif): TAAACGATGCC Consensus sequence (reverse complement motif): GGCATCGTTTA ************************************************************************ Best Matches for Motif ID 30 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 NR1H2RXRA Original Motif Reverse Complement Backward 3 11 0.0511364 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: GTTGACCTTTGACCTTT ----TAAACGATGCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 NR2F1 Original Motif Original Motif Forward 1 11 0.0563811 Consensus sequence (original motif): TGAMCTTTGMMCYT Consensus sequence (reverse complement motif): AKGYYCAAAGRTCA Alignment: TGAMCTTTGMMCYT TAAACGATGCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 19 atactttggc Reverse Complement Reverse Complement Forward 1 10 0.5375 Consensus sequence (original motif): ATACTTTGGC Consensus sequence (reverse complement motif): GCCAAAGTAT Alignment: GCCAAAGTAT- GGCATCGTTTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 31 ctatacggacg Original Motif Original Motif Forward 2 10 0.5625 Consensus sequence (original motif): CTATACGGACG Consensus sequence (reverse complement motif): CGTCCGTATAG Alignment: CTATACGGACG- -TAAACGATGCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 27 AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement Forward 17 8 1.55502 Consensus sequence (original motif): AGTGCTCCACTGTGGTGTCACAGT Consensus sequence (reverse complement motif): ACTGTGACACCACAGTGGAGCACT Alignment: ACTGTGACACCACAGTGGAGCACT--- ----------------TAAACGATGCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 21 AmTGTGACACCACAGT Original Motif Original Motif Backward 9 8 1.55908 Consensus sequence (original motif): AMTGTGACACCACAGT Consensus sequence (reverse complement motif): ACTGTGGTGTCACART Alignment: ---AMTGTGACACCACAGT TAAACGATGCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 29 cCGCGGrCACG Reverse Complement Reverse Complement Forward 4 8 1.5625 Consensus sequence (original motif): CCGCGGRCACG Consensus sequence (reverse complement motif): CGTGKCCGCGG Alignment: CGTGKCCGCGG--- ---GGCATCGTTTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 33 srACyCCGAyr Original Motif Original Motif Backward 5 7 2.04464 Consensus sequence (original motif): SRACYCCGAYR Consensus sequence (reverse complement motif): KKTCGGKGTKS Alignment: ----SRACYCCGAYR TAAACGATGCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 16 CTCF Original Motif Reverse Complement Forward 13 7 2.05416 Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM Alignment: BMSMGCCYMCTKSTGGMHM---- ------------TAAACGATGCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 20 CagTGCTCCACTGTGgT Reverse Complement Reverse Complement Forward 11 7 2.05952 Consensus sequence (original motif): CAGTGCTCCACTGTGBT Consensus sequence (reverse complement motif): ABCACAGTGGAGCACTG Alignment: ABCACAGTGGAGCACTG---- ----------GGCATCGTTTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 31 Motif name: ctatacggacg Consensus sequence (original motif): CTATACGGACG Consensus sequence (reverse complement motif): CGTCCGTATAG ************************************************************************ Best Matches for Motif ID 31 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 33 srACyCCGAyr Original Motif Original Motif Forward 1 11 0.0803571 Consensus sequence (original motif): SRACYCCGAYR Consensus sequence (reverse complement motif): KKTCGGKGTKS Alignment: SRACYCCGAYR CTATACGGACG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 30 taaacgatgcc Original Motif Original Motif Backward 2 10 0.580357 Consensus sequence (original motif): TAAACGATGCC Consensus sequence (reverse complement motif): GGCATCGTTTA Alignment: -TAAACGATGCC CTATACGGACG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 13 MIZF Reverse Complement Reverse Complement Forward 2 9 1.0623 Consensus sequence (original motif): BAACGTCCGC Consensus sequence (reverse complement motif): GCGGACGTTV Alignment: GCGGACGTTV-- -CGTCCGTATAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 19 atactttggc Reverse Complement Reverse Complement Forward 2 9 1.06647 Consensus sequence (original motif): ATACTTTGGC Consensus sequence (reverse complement motif): GCCAAAGTAT Alignment: GCCAAAGTAT-- -CGTCCGTATAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 29 cCGCGGrCACG Original Motif Original Motif Backward 3 9 1.07758 Consensus sequence (original motif): CCGCGGRCACG Consensus sequence (reverse complement motif): CGTGKCCGCGG Alignment: --CCGCGGRCACG CTATACGGACG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 28 ssGCkTGCssk Reverse Complement Original Motif Backward 4 8 1.56473 Consensus sequence (original motif): SSGCKTGCSSK Consensus sequence (reverse complement motif): YSSGCAYGCSS Alignment: ---SSGCKTGCSSK CGTCCGTATAG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 32 gCGCGCsCgsG Reverse Complement Original Motif Forward 4 8 1.57871 Consensus sequence (original motif): GCGCGCSCGCG Consensus sequence (reverse complement motif): CGCGSGCGCGC Alignment: GCGCGCSCGCG--- ---CGTCCGTATAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 24 ssCCCCGCSssk Original Motif Reverse Complement Forward 6 7 2.06779 Consensus sequence (original motif): SBCCCCGCCSBB Consensus sequence (reverse complement motif): BBSGGCGGGGBS Alignment: BBSGGCGGGGBS---- -----CTATACGGACG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 Myc Original Motif Original Motif Backward 5 6 2.54768 Consensus sequence (original motif): VGCACGTGGH Consensus sequence (reverse complement motif): DCCACGTGCV Alignment: -----VGCACGTGGH CTATACGGACG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 6 Mycn Original Motif Original Motif Backward 5 6 2.55363 Consensus sequence (original motif): HSCACGTGGC Consensus sequence (reverse complement motif): GCCACGTGSD Alignment: -----HSCACGTGGC CTATACGGACG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 32 Motif name: gCGCGCsCgsG Consensus sequence (original motif): GCGCGCSCGCG Consensus sequence (reverse complement motif): CGCGSGCGCGC ************************************************************************ Best Matches for Motif ID 32 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 29 cCGCGGrCACG Original Motif Original Motif Backward 1 11 0.0131931 Consensus sequence (original motif): CCGCGGRCACG Consensus sequence (reverse complement motif): CGTGKCCGCGG Alignment: CCGCGGRCACG GCGCGCSCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 28 ssGCkTGCssk Original Motif Original Motif Backward 1 11 0.0299395 Consensus sequence (original motif): SSGCKTGCSSK Consensus sequence (reverse complement motif): YSSGCAYGCSS Alignment: SSGCKTGCSSK GCGCGCSCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 18 sscCCCGCGcs Original Motif Original Motif Backward 1 11 0.0338798 Consensus sequence (original motif): BSCCCCGCGBS Consensus sequence (reverse complement motif): SBCGCGGGGSB Alignment: BSCCCCGCGBS GCGCGCSCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 24 ssCCCCGCSssk Original Motif Original Motif Backward 2 11 0.0410595 Consensus sequence (original motif): SBCCCCGCCSBB Consensus sequence (reverse complement motif): BBSGGCGGGGBS Alignment: SBCCCCGCCSBB GCGCGCSCGCG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 16 CTCF Original Motif Reverse Complement Forward 7 11 0.0537298 Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM Alignment: BMSMGCCYMCTKSTGGMHM ------GCGCGCSCGCG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Original Motif Reverse Complement Forward 4 11 0.0651602 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: MGGTCAGGGTGACCTRDBHV ---GCGCGCSCGCG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 13 MIZF Original Motif Original Motif Forward 1 10 0.55601 Consensus sequence (original motif): BAACGTCCGC Consensus sequence (reverse complement motif): GCGGACGTTV Alignment: BAACGTCCGC- GCGCGCSCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 Myc Original Motif Reverse Complement Forward 1 10 0.561823 Consensus sequence (original motif): VGCACGTGGH Consensus sequence (reverse complement motif): DCCACGTGCV Alignment: DCCACGTGCV- GCGCGCSCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 6 Mycn Original Motif Original Motif Backward 1 10 0.561904 Consensus sequence (original motif): HSCACGTGGC Consensus sequence (reverse complement motif): GCCACGTGSD Alignment: -HSCACGTGGC GCGCGCSCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 31 ctatacggacg Reverse Complement Original Motif Backward 4 8 1.56956 Consensus sequence (original motif): CTATACGGACG Consensus sequence (reverse complement motif): CGTCCGTATAG Alignment: ---CTATACGGACG CGCGSGCGCGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 33 Motif name: srACyCCGAyr Consensus sequence (original motif): SRACYCCGAYR Consensus sequence (reverse complement motif): KKTCGGKGTKS ************************************************************************ Best Matches for Motif ID 33 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 ESR1 Reverse Complement Reverse Complement Forward 2 11 0.0287254 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV Alignment: MGGTCAGGGTGACCTRDBHV -KKTCGGKGTKS-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 23 TGGAGCACTGTGACAcCACAGTGg Reverse Complement Reverse Complement Backward 5 11 0.0316919 Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA Alignment: CCACTGTGVTGTCACAGTGCTCCA ---------KKTCGGKGTKS---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 ESR2 Original Motif Reverse Complement Backward 5 11 0.032424 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV Alignment: BAGGYCABHBTGACCKHV ---SRACYCCGAYR---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 TgTGgTGTCACAGTGCTCC Original Motif Reverse Complement Forward 6 11 0.0326389 Consensus sequence (original motif): TGTGGTGTCACAGTGCTCC Consensus sequence (reverse complement motif): GGAGCACTGTGACACCACA Alignment: GGAGCACTGTGACACCACA -----SRACYCCGAYR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 22 CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement Backward 7 11 0.0342172 Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG Alignment: AGTGSWSCACTGTGAMAMCACAGTG --------SRACYCCGAYR------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 REST Reverse Complement Reverse Complement Forward 7 11 0.0347246 Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: GGYGCTGTCCATGGTGCTGAA ------KKTCGGKGTKS---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 31 ctatacggacg Original Motif Original Motif Forward 1 11 0.0430556 Consensus sequence (original motif): CTATACGGACG Consensus sequence (reverse complement motif): CGTCCGTATAG Alignment: CTATACGGACG SRACYCCGAYR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 25 wwCCAmAGTCmt Reverse Complement Original Motif Forward 2 11 0.0430556 Consensus sequence (original motif): DDCCAMAGTCHB Consensus sequence (reverse complement motif): VDGACTRTGGDD Alignment: DDCCAMAGTCHB -KKTCGGKGTKS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 24 ssCCCCGCSssk Reverse Complement Reverse Complement Forward 3 10 0.513889 Consensus sequence (original motif): SBCCCCGCCSBB Consensus sequence (reverse complement motif): BBSGGCGGGGBS Alignment: BBSGGCGGGGBS- --KKTCGGKGTKS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 18 sscCCCGCGcs Reverse Complement Reverse Complement Backward 2 10 0.535703 Consensus sequence (original motif): BSCCCCGCGBS Consensus sequence (reverse complement motif): SBCGCGGGGSB Alignment: -SBCGCGGGGSB KKTCGGKGTKS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 09-23-2015 12:19:03 Runtime: 43.9155 seconds. MOTIFSIM is written by Ngoc Tam L. Tran