Best Matches in Database for Each Motif (Highest to Lowest)
| Dataset #: 1 | Motif ID: 1 | Motif name: Motif 1 |
| Original motif | Reverse complement motif |
| Consensus sequence: GGCGGGGC | Consensus sequence: GCCCCGCC |
 |
 |
Best Matches for Motif ID 1 (Highest to Lowest)
| Motif ID: | UP00093 |
| Motif name: | Klf7_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 6 |
| Number of overlap: | 8 |
| Similarity score: | 0 |
Alignment:
HBDRCCMCGCCCHHHD
---GCCCCGCC-----
| Original motif | Reverse complement motif |
| Consensus sequence: HBDRCCMCGCCCHHHD | Consensus sequence: DHHDGGGCGRGGKHBH |
 |
 |
| Motif ID: | UP00000 |
| Motif name: | Smad3_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 7 |
| Number of overlap: | 8 |
| Similarity score: | 0.00617043 |
Alignment:
BHBHDTGGCGGGGBDHD
------GGCGGGGC---
| Original motif | Reverse complement motif |
| Consensus sequence: DHHBCCCCGCCAHHBHB | Consensus sequence: BHBHDTGGCGGGGBDHD |
 |
 |
| Motif ID: | UP00002 |
| Motif name: | Sp4_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 5 |
| Number of overlap: | 8 |
| Similarity score: | 0.0145996 |
Alignment:
BDWAGGCGTGBCHHD
----GGCGGGGC---
| Original motif | Reverse complement motif |
| Consensus sequence: BDWAGGCGTGBCHHD | Consensus sequence: HHDGBCACGCCTWDB |
 |
 |
| Motif ID: | UP00002 |
| Motif name: | Sp4_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 2 |
| Number of overlap: | 8 |
| Similarity score: | 0.0233506 |
Alignment:
BDHHMCGCCCCCTHVBB
-GCCCCGCC--------
| Original motif | Reverse complement motif |
| Consensus sequence: BDHHMCGCCCCCTHVBB | Consensus sequence: BVVHAGGGGGCGRDHHB |
 |
 |
| Motif ID: | UP00024 |
| Motif name: | Glis2_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 5 |
| Number of overlap: | 8 |
| Similarity score: | 0.0291232 |
Alignment:
HHHVGACCCCCCVBRD
----GCCCCGCC----
| Original motif | Reverse complement motif |
| Consensus sequence: HHHVGACCCCCCVBRD | Consensus sequence: HKBBGGGGGGTCVHHH |
 |
 |
| Dataset #: 3 | Motif ID: 24 | Motif name: SP1 |
| Original motif | Reverse complement motif |
| Consensus sequence: CCCCKCCCCC | Consensus sequence: GGGGGYGGGG |
 |
 |
Best Matches for Motif ID 24 (Highest to Lowest)
| Motif ID: | UP00021 |
| Motif name: | Zfp281_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 10 |
| Similarity score: | 0.0231018 |
Alignment:
DBCCCCCCCCCCMYC
--CCCCKCCCCC---
| Original motif | Reverse complement motif |
| Consensus sequence: DBCCCCCCCCCCMYC | Consensus sequence: GKRGGGGGGGGGGBD |
 |
 |
| Motif ID: | UP00093 |
| Motif name: | Klf7_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 10 |
| Similarity score: | 0.0303207 |
Alignment:
HBDRCCMCGCCCHHHD
----CCCCKCCCCC--
| Original motif | Reverse complement motif |
| Consensus sequence: HBDRCCMCGCCCHHHD | Consensus sequence: DHHDGGGCGRGGKHBH |
| |
|
| Motif ID: | UP00033 |
| Motif name: | Zfp410_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 5 |
| Number of overlap: | 10 |
| Similarity score: | 0.0323007 |
Alignment:
HHHHDGGGGCGGDBHDV
----GGGGGYGGGG---
| Original motif | Reverse complement motif |
| Consensus sequence: BHHBHCCGCCCCDHHHH | Consensus sequence: HHHHDGGGGCGGDBHDV |
 |
 |
| Motif ID: | UP00099 |
| Motif name: | Ascl2_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 10 |
| Similarity score: | 0.0340973 |
Alignment:
HVDVGGGHGGGGDBHB
--GGGGGYGGGG----
| Original motif | Reverse complement motif |
| Consensus sequence: BHVDCCCCDCCCBDBH | Consensus sequence: HVDVGGGHGGGGDBHB |
 |
 |
| Motif ID: | UP00043 |
| Motif name: | Bcl6b_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 10 |
| Similarity score: | 0.0351051 |
Alignment:
BHHHWGGGGCGGBBVH
----GGGGGYGGGG--
| Original motif | Reverse complement motif |
| Consensus sequence: HBBBCCGCCCCWHHHV | Consensus sequence: BHHHWGGGGCGGBBVH |
 |
 |
| Dataset #: 3 | Motif ID: 27 | Motif name: Klf4 |
| Original motif | Reverse complement motif |
| Consensus sequence: DGGGYGKGGC | Consensus sequence: GCCYCMCCCD |
 |
 |
Best Matches for Motif ID 27 (Highest to Lowest)
| Motif ID: | UP00093 |
| Motif name: | Klf7_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 10 |
| Similarity score: | 0 |
Alignment:
DHHDGGGCGRGGKHBH
---DGGGYGKGGC---
| Original motif | Reverse complement motif |
| Consensus sequence: HBDRCCMCGCCCHHHD | Consensus sequence: DHHDGGGCGRGGKHBH |
| |
|
| Motif ID: | UP00021 |
| Motif name: | Zfp281_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 10 |
| Similarity score: | 0.0153308 |
Alignment:
DBCCCCCCCCCCMYC
---GCCYCMCCCD--
| Original motif | Reverse complement motif |
| Consensus sequence: DBCCCCCCCCCCMYC | Consensus sequence: GKRGGGGGGGGGGBD |
| |
|
| Motif ID: | UP00002 |
| Motif name: | Sp4_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 10 |
| Similarity score: | 0.0186791 |
Alignment:
BDWAGGCGTGBCHHD
--DGGGYGKGGC---
| Original motif | Reverse complement motif |
| Consensus sequence: BDWAGGCGTGBCHHD | Consensus sequence: HHDGBCACGCCTWDB |
| |
|
| Motif ID: | UP00022 |
| Motif name: | Zfp740_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 10 |
| Similarity score: | 0.0218399 |
Alignment:
HVBCCCCCCCCMHHHB
--GCCYCMCCCD----
| Original motif | Reverse complement motif |
| Consensus sequence: HVBCCCCCCCCMHHHB | Consensus sequence: BHHDYGGGGGGGGBVD |
 |
 |
| Motif ID: | UP00007 |
| Motif name: | Egr1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 10 |
| Similarity score: | 0.0249586 |
Alignment:
VHTGCGGGGGCGGH
GCCYCMCCCD----
| Original motif | Reverse complement motif |
| Consensus sequence: HCCGCCCCCGCAHB | Consensus sequence: VHTGCGGGGGCGGH |
 |
 |
| Dataset #: 4 | Motif ID: 44 | Motif name: dhACATTCTkh |
| Original motif | Reverse complement motif |
| Consensus sequence: DHACATTCTGH | Consensus sequence: HCAGAATGTHD |
 |
 |
Best Matches for Motif ID 44 (Highest to Lowest)
| Motif ID: | UP00038 |
| Motif name: | Spdef_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.00581553 |
Alignment:
VDWYTAGGATGTHVDH
---HCAGAATGTHD--
| Original motif | Reverse complement motif |
| Consensus sequence: DDBHACATCCTAKWDV | Consensus sequence: VDWYTAGGATGTHVDH |
 |
 |
| Motif ID: | UP00528 |
| Motif name: | Foxm1_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 8 |
| Number of overlap: | 11 |
| Similarity score: | 0.00582895 |
Alignment:
DCATDBTGHGCATKMTTBRSWR
-------DHACATTCTGH----
| Original motif | Reverse complement motif |
| Consensus sequence: MWSMBAARRATGCDCABHATGD | Consensus sequence: DCATDBTGHGCATKMTTBRSWR |
 |
 |
| Motif ID: | UP00023 |
| Motif name: | Sox30_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.00613057 |
Alignment:
HHHHMHATTGTTBDHD
--DHACATTCTGH---
| Original motif | Reverse complement motif |
| Consensus sequence: DHDBAACAATDRHHHH | Consensus sequence: HHHHMHATTGTTBDHD |
 |
 |
| Motif ID: | UP00034 |
| Motif name: | Sox7_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 6 |
| Number of overlap: | 11 |
| Similarity score: | 0.0119275 |
Alignment:
WBHHHHHMDATTGTTHDHDVHH
-----DHACATTCTGH------
| Original motif | Reverse complement motif |
| Consensus sequence: HHBDHDDAACAATDRHHHHHBW | Consensus sequence: WBHHHHHMDATTGTTHDHDVHH |
 |
 |
| Motif ID: | UP00030 |
| Motif name: | Sox11_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 11 |
| Similarity score: | 0.0122803 |
Alignment:
HHBTMCTTTGTTMDDVH
--DHACATTCTGH----
| Original motif | Reverse complement motif |
| Consensus sequence: HBDDRAACAAAGRABHH | Consensus sequence: HHBTMCTTTGTTMDDVH |
 |
 |
| Dataset #: 4 | Motif ID: 45 | Motif name: wbgTAAATAww |
| Original motif | Reverse complement motif |
| Consensus sequence: DBGTAAATAHD | Consensus sequence: DHTATTTACBD |
 |
 |
Best Matches for Motif ID 45 (Highest to Lowest)
| Motif ID: | UP00242 |
| Motif name: | Hoxc8 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 11 |
| Similarity score: | 0 |
Alignment:
AHDHTAATTACHHHHV
--DHTATTTACBD---
| Original motif | Reverse complement motif |
| Consensus sequence: BHDDDGTAATTAHHDT | Consensus sequence: AHDHTAATTACHHHHV |
 |
 |
| Motif ID: | UP00073 |
| Motif name: | Foxa2_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.00453517 |
Alignment:
HHWAWGTAAAYAAAVDB
---DBGTAAATAHD---
| Original motif | Reverse complement motif |
| Consensus sequence: HHWAWGTAAAYAAAVDB | Consensus sequence: BDVTTTKTTTACWTWHH |
 |
 |
| Motif ID: | UP00039 |
| Motif name: | Foxj3_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.00490457 |
Alignment:
HDHADGTAAACAAAVVH
---DBGTAAATAHD---
| Original motif | Reverse complement motif |
| Consensus sequence: HDHADGTAAACAAAVVH | Consensus sequence: DVVTTTGTTTACDTHDH |
 |
 |
| Motif ID: | UP00041 |
| Motif name: | Foxj1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 5 |
| Number of overlap: | 11 |
| Similarity score: | 0.00656547 |
Alignment:
HDHRTAAACAAAHDDD
-DBGTAAATAHD----
| Original motif | Reverse complement motif |
| Consensus sequence: HDHRTAAACAAAHDDD | Consensus sequence: DDDHTTTGTTTAMHDH |
 |
 |
| Motif ID: | UP00182 |
| Motif name: | Hoxa6 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 11 |
| Similarity score: | 0.0086354 |
Alignment:
DTHHGGTAATTAYCYT
---DBGTAAATAHD--
| Original motif | Reverse complement motif |
| Consensus sequence: AMGKTAATTACCHHAD | Consensus sequence: DTHHGGTAATTAYCYT |
 |
 |