MOTIFSIM - MOTIF SIMilarity Detection Tool

Version 2.2

INPUT

Input Parameters
Number of files: 5
Number of top significant motifs: 5
Number of best matches: 5
Similarity cutoff >= 0.75
Matching motif database: Jaspar Fungi
Motif tree: Yes
Combined similar motifs: Yes
Output file type: All
Output file format: All

Input files and motif counts
File name Count of motifs Dataset number
DREME_DM230.txt 1 1
MEME_DM230.txt 20 2
PScanChIP_DM230.txt 14 3
RSAT_peak-motifs_DM230.txt 10 4
W-ChIPMotifs_DM230.txt 11 5

RESULTS

Best Matches in Database for Each Motif (Highest to Lowest)

Dataset #: 1 Motif ID: 1 Motif name: Motif 1

Original motif Reverse complement motif
Consensus sequence: GGCGGGGC Consensus sequence: GCCCCGCC

Best Matches for Motif ID 1 (Highest to Lowest)

Motif ID: MA0290.1
Motif name: DAL81
Taxon: Fungi
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 11
Number of overlap: 8
Similarity score: 0.0497454

Alignment:
AAAAGCCGCGGGCGGGATT
----------GGCGGGGC-

Original motif Reverse complement motif
Consensus sequence: AAAAGCCGCGGGCGGGATT Consensus sequence: AATCCCGCCCGCGGCTTTT


Motif ID: MA0283.1
Motif name: CHA4
Taxon: Fungi
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0552504

Alignment:
GGCGGAGW
GGCGGGGC

Original motif Reverse complement motif
Consensus sequence: GGCGGAGW Consensus sequence: WCTCCGCC


Motif ID: MA0344.1
Motif name: NHP10
Taxon: Fungi
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0635389

Alignment:
TCCCCGGC
GCCCCGCC

Original motif Reverse complement motif
Consensus sequence: GCCGGGGA Consensus sequence: TCCCCGGC


Motif ID: MA0425.1
Motif name: YGR067C
Taxon: Fungi
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0.0654186

Alignment:
VCCCCDCHHHDDBD
GCCCCGCC------

Original motif Reverse complement motif
Consensus sequence: VCCCCDCHHHDDBD Consensus sequence: DBDDHHHGDGGGGB


Motif ID: MA0431.1
Motif name: TDA9
Taxon: Fungi
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0668666

Alignment:
VCCCCDCWH
GCCCCGCC-

Original motif Reverse complement motif
Consensus sequence: VCCCCDCWH Consensus sequence: DWGHGGGGB


Dataset #: 3 Motif ID: 24 Motif name: SP1

Original motif Reverse complement motif
Consensus sequence: CCCCKCCCCC Consensus sequence: GGGGGYGGGG

Best Matches for Motif ID 24 (Highest to Lowest)

Motif ID: MA0425.1
Motif name: YGR067C
Taxon: Fungi
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0399399

Alignment:
VCCCCDCHHHDDBD
-CCCCKCCCCC---

Original motif Reverse complement motif
Consensus sequence: VCCCCDCHHHDDBD Consensus sequence: DBDDHHHGDGGGGB


Motif ID: MA0323.1
Motif name: IXR1
Taxon: Fungi
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 10
Similarity score: 0.0418489

Alignment:
AARCCGGRAGCGGKG
-----GGGGGYGGGG

Original motif Reverse complement motif
Consensus sequence: AARCCGGRAGCGGKG Consensus sequence: CYCCGCTKCCGGMTT


Motif ID: MA0290.1
Motif name: DAL81
Taxon: Fungi
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 10
Similarity score: 0.059697

Alignment:
AATCCCGCCCGCGGCTTTT
--CCCCKCCCCC-------

Original motif Reverse complement motif
Consensus sequence: AAAAGCCGCGGGCGGGATT Consensus sequence: AATCCCGCCCGCGGCTTTT


Motif ID: MA0395.1
Motif name: STP2
Taxon: Fungi
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.0702654

Alignment:
HBDHVKKKCGGCGCCBHBVH
---GGGGGYGGGG-------

Original motif Reverse complement motif
Consensus sequence: HVVHBGGCGCCGYRYVHHBH Consensus sequence: HBDHVKKKCGGCGCCBHBVH


Motif ID: MA0347.1
Motif name: NRG1
Taxon: Fungi
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 10
Number of overlap: 10
Similarity score: 0.0720885

Alignment:
HHVVDHMAGGGTCCWDBGVD
-GGGGGYGGGG---------

Original motif Reverse complement motif
Consensus sequence: HHVVDHMAGGGTCCWDBGVD Consensus sequence: DVCBDWGGACCCTRHDVBHD


Dataset #: 3 Motif ID: 27 Motif name: Klf4

Original motif Reverse complement motif
Consensus sequence: DGGGYGKGGC Consensus sequence: GCCYCMCCCD

Best Matches for Motif ID 27 (Highest to Lowest)

Motif ID: MA0425.1
Motif name: YGR067C
Taxon: Fungi
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.0377858

Alignment:
VCCCCDCHHHDDBD
GCCYCMCCCD----

Original motif Reverse complement motif
Consensus sequence: VCCCCDCHHHDDBD Consensus sequence: DBDDHHHGDGGGGB


Motif ID: MA0395.1
Motif name: STP2
Taxon: Fungi
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 10
Similarity score: 0.0479742

Alignment:
HVVHBGGCGCCGYRYVHHBH
---DGGGYGKGGC-------

Original motif Reverse complement motif
Consensus sequence: HVVHBGGCGCCGYRYVHHBH Consensus sequence: HBDHVKKKCGGCGCCBHBVH


Motif ID: MA0290.1
Motif name: DAL81
Taxon: Fungi
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 10
Similarity score: 0.0512896

Alignment:
AAAAGCCGCGGGCGGGATT
--------DGGGYGKGGC-

Original motif Reverse complement motif
Consensus sequence: AAAAGCCGCGGGCGGGATT Consensus sequence: AATCCCGCCCGCGGCTTTT


Motif ID: MA0413.1
Motif name: USV1
Taxon: Fungi
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 10
Number of overlap: 10
Similarity score: 0.0518653

Alignment:
DDDTTMCCCCTGAAHHDBDV
-GCCYCMCCCD---------

Original motif Reverse complement motif
Consensus sequence: DDDTTMCCCCTGAAHHDBDV Consensus sequence: VDBDHHTTCAGGGGRAADDD


Motif ID: MA0269.1
Motif name: AFT1
Taxon: Fungi
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 10
Similarity score: 0.0608491

Alignment:
VBWDBSGGGTGCARTAHBDVV
-----DGGGYGKGGC------

Original motif Reverse complement motif
Consensus sequence: BBDBHTAKTGCACCCSVDWBV Consensus sequence: VBWDBSGGGTGCARTAHBDVV


Dataset #: 4 Motif ID: 44 Motif name: dhACATTCTkh

Original motif Reverse complement motif
Consensus sequence: DHACATTCTGH Consensus sequence: HCAGAATGTHD

Best Matches for Motif ID 44 (Highest to Lowest)

Motif ID: MA0377.1
Motif name: SFL1
Taxon: Fungi
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0436478

Alignment:
HHVHDHATMGAAGAAAHDWDW
------HCAGAATGTHD----

Original motif Reverse complement motif
Consensus sequence: HHVHDHATMGAAGAAAHDWDW Consensus sequence: WDWDHTTTCTTCYATHHHVHH


Motif ID: MA0336.1
Motif name: MGA1
Taxon: Fungi
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 11
Similarity score: 0.0439501

Alignment:
DDVVHBATAGAACAYDHHDHV
------HCAGAATGTHD----

Original motif Reverse complement motif
Consensus sequence: DDVVHBATAGAACAYDHHDHV Consensus sequence: BHDHDDKTGTTCTATVDBVHD


Motif ID: MA0378.1
Motif name: SFP1
Taxon: Fungi
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 11
Similarity score: 0.0443222

Alignment:
DHDDDRAAAAWTTTTYYHBDD
-----DHACATTCTGH-----

Original motif Reverse complement motif
Consensus sequence: DHDDDRAAAAWTTTTYYHBDD Consensus sequence: HHBHMKAAAAWTTTTKDHDHD


Motif ID: MA0440.1
Motif name: ZAP1
Taxon: Fungi
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0482357

Alignment:
ACCYTMAAGGTBATG
--HCAGAATGTHD--

Original motif Reverse complement motif
Consensus sequence: ACCYTMAAGGTBATG Consensus sequence: CATBACCTTYAMGGT


Motif ID: MA0345.1
Motif name: NHP6A
Taxon: Fungi
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0504146

Alignment:
VHDHHYWHTATATAADDDHDH
----HCAGAATGTHD------

Original motif Reverse complement motif
Consensus sequence: VHDHHYWHTATATAADDDHDH Consensus sequence: HHHDDDTTATATAHWKDHHHB


Dataset #: 4 Motif ID: 45 Motif name: wbgTAAATAww

Original motif Reverse complement motif
Consensus sequence: DBGTAAATAHD Consensus sequence: DHTATTTACBD

Best Matches for Motif ID 45 (Highest to Lowest)

Motif ID: MA0929.1
Motif name: NCU00019
Taxon: Fungi
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0

Alignment:
DBDGTAAAYAHD
-DBGTAAATAHD

Original motif Reverse complement motif
Consensus sequence: DBDGTAAAYAHD Consensus sequence: BHTKTTTACDDB


Motif ID: MA0345.1
Motif name: NHP6A
Taxon: Fungi
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0222559

Alignment:
HHHDDDTTATATAHWKDHHHB
----DBGTAAATAHD------

Original motif Reverse complement motif
Consensus sequence: VHDHHYWHTATATAADDDHDH Consensus sequence: HHHDDDTTATATAHWKDHHHB


Motif ID: MA0296.1
Motif name: FKH1
Taxon: Fungi
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.024745

Alignment:
BDWWWTGTAAACAAAVDDDV
----DBGTAAATAHD-----

Original motif Reverse complement motif
Consensus sequence: BDWWWTGTAAACAAAVDDDV Consensus sequence: BHHDVTTTGTTTACAWWWHV


Motif ID: MA0386.1
Motif name: SPT15
Taxon: Fungi
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 11
Similarity score: 0.0327275

Alignment:
VHHHAGDWATATATATDSVHD
------DBGTAAATAHD----

Original motif Reverse complement motif
Consensus sequence: VHHHAGDWATATATATDSVHD Consensus sequence: DHVSDATATATATWDCTHDHV


Motif ID: MA0346.1
Motif name: NHP6B
Taxon: Fungi
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0338073

Alignment:
BHDKWWWATATATWHHHAHH
------DHTATTTACBD---

Original motif Reverse complement motif
Consensus sequence: HHTHHHWATATATWWWRDDV Consensus sequence: BHDKWWWATATATWHHHAHH


Results created by MOTIFSIM on 02-13-2023 13:18:04
Runtime: 157.253 seconds

MOTIFSIM is written by Ngoc Tam L. Tran
Motif logo generated by weblogo