MOTIFSIM - MOTIF SIMilarity Detection Tool

Version 2.0

INPUT

Input Parameters
Number of files: 4
Number of top significant motifs: 10
Number of best matches: 5
Similarity cutoff >= 0.75
Output file type: All
Output file format: All

Input files and motif counts
File name Count of motifs Dataset number
DREME_DM254.txt 45 1
MEME-CHIP_DM254.txt 24 2
PScanChIP_DM254.txt 63 3
RSAT_peak-motifs_DM254.txt 39 4

RESULTS

Top 10 Significant Motifs - Global Matching (Highest to Lowest)

Dataset #: 2 Motif ID: 46 Motif name: Motif 46

Original motif     Consensus sequence: AGRKGGCR Reverse complement motif     Consensus sequence: KGCCYKCT

Best Matches for Top Significant Motif ID 46 (Highest to Lowest)

Dataset #: 1
Motif ID: 1
Motif name: Motif 1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0

Alignment:
AGRKGGCR
AGRKGGCR

Original motif     Consensus sequence: AGRKGGCR Reverse complement motif     Consensus sequence: KGCCYKCT


Dataset #: 4
Motif ID: 147
Motif name: asCAGrkGGCrsy
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.00651548

Alignment:
ASCAGRGGGCRSB
---AGRKGGCR--

Original motif     Consensus sequence: ASCAGRGGGCRSB Reverse complement motif     Consensus sequence: BSKGCCCMCTGST


Dataset #: 4
Motif ID: 165
Motif name: wgGCCAshAGrGGGCrsy
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 8
Similarity score: 0.0102443

Alignment:
KBKGCCCKCTHGTGGCHH
--KGCCYKCT--------

Original motif     Consensus sequence: HDGCCACHAGRGGGCRBY Reverse complement motif     Consensus sequence: KBKGCCCKCTHGTGGCHH


Dataset #: 4
Motif ID: 166
Motif name: CasCAGrGGGCrsy
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0104954

Alignment:
CACCAGRGGGCRSB
----AGRKGGCR--

Original motif     Consensus sequence: CACCAGRGGGCRSB Reverse complement motif     Consensus sequence: BSKGCCCKCTGGTG


Dataset #: 4
Motif ID: 163
Motif name: gwGGCCAGmAGAGGGCrby
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0165822

Alignment:
KBKGCCCTCTYCTGGCCHV
--KGCCYKCT---------

Original motif     Consensus sequence: VHGGCCAGMAGAGGGCRBY Reverse complement motif     Consensus sequence: KBKGCCCTCTYCTGGCCHV


Dataset #: 1 Motif ID: 8 Motif name: Motif 8

Original motif     Consensus sequence: AAATAH Reverse complement motif     Consensus sequence: DTATTT

Best Matches for Top Significant Motif ID 8 (Highest to Lowest)

Dataset #: 4
Motif ID: 150
Motif name: waATwAAAATAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.00224204

Alignment:
DHATWAAAATAHD
------AAATAH-

Original motif     Consensus sequence: DHATWAAAATAHD Reverse complement motif     Consensus sequence: DHTATTTTWATHD


Dataset #: 4
Motif ID: 157
Motif name: wtATTTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.00556446

Alignment:
WWTAAAAATAD
-----AAATAH

Original motif     Consensus sequence: DTATTTTTAWW Reverse complement motif     Consensus sequence: WWTAAAAATAD


Dataset #: 2
Motif ID: 68
Motif name: Motif 68
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.0128826

Alignment:
WAAWAAAWAWWWAA
----AAATAH----

Original motif     Consensus sequence: WAAWAAAWAWWWAA Reverse complement motif     Consensus sequence: TTWWWTWTTTWTTW


Dataset #: 2
Motif ID: 52
Motif name: Motif 52
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0167304

Alignment:
AAATAAAW
AAATAH--

Original motif     Consensus sequence: AAATAAAW Reverse complement motif     Consensus sequence: WTTTATTT


Dataset #: 3
Motif ID: 118
Motif name: SRF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0210491

Alignment:
GCCCATATATGG
----AAATAH--

Original motif     Consensus sequence: GCCCATATATGG Reverse complement motif     Consensus sequence: CCATATATGGGC


Dataset #: 1 Motif ID: 20 Motif name: Motif 20

Original motif     Consensus sequence: CACGTR Reverse complement motif     Consensus sequence: MACGTG

Best Matches for Top Significant Motif ID 20 (Highest to Lowest)

Dataset #: 3
Motif ID: 71
Motif name: Arnt
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0

Alignment:
CACGTG
CACGTR

Original motif     Consensus sequence: CACGTG Reverse complement motif     Consensus sequence: CACGTG


Dataset #: 3
Motif ID: 95
Motif name: MYCMAX
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0102183

Alignment:
RASCACGTGGT
---MACGTG--

Original motif     Consensus sequence: RASCACGTGGT Reverse complement motif     Consensus sequence: ACCACGTGSTM


Dataset #: 3
Motif ID: 91
Motif name: MAX
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.011152

Alignment:
DAHCACGTGD
---MACGTG-

Original motif     Consensus sequence: DAHCACGTGD Reverse complement motif     Consensus sequence: BCACGTGDTD


Dataset #: 3
Motif ID: 126
Motif name: USF1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.0131944

Alignment:
CACGTGR
MACGTG-

Original motif     Consensus sequence: CACGTGR Reverse complement motif     Consensus sequence: MCACGTG


Dataset #: 3
Motif ID: 94
Motif name: Myc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0253396

Alignment:
DCCACGTGCV
--CACGTR--

Original motif     Consensus sequence: VGCACGTGGH Reverse complement motif     Consensus sequence: DCCACGTGCV


Dataset #: 1 Motif ID: 1 Motif name: Motif 1

Original motif     Consensus sequence: AGRKGGCR Reverse complement motif     Consensus sequence: KGCCYKCT

Best Matches for Top Significant Motif ID 1 (Highest to Lowest)

Dataset #: 2
Motif ID: 46
Motif name: Motif 46
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0

Alignment:
AGRKGGCR
AGRKGGCR

Original motif     Consensus sequence: AGRKGGCR Reverse complement motif     Consensus sequence: KGCCYKCT


Dataset #: 4
Motif ID: 147
Motif name: asCAGrkGGCrsy
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.00628523

Alignment:
ASCAGRGGGCRSB
---AGRKGGCR--

Original motif     Consensus sequence: ASCAGRGGGCRSB Reverse complement motif     Consensus sequence: BSKGCCCMCTGST


Dataset #: 4
Motif ID: 165
Motif name: wgGCCAshAGrGGGCrsy
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0102152

Alignment:
HDGCCACHAGRGGGCRBY
--------AGRKGGCR--

Original motif     Consensus sequence: HDGCCACHAGRGGGCRBY Reverse complement motif     Consensus sequence: KBKGCCCKCTHGTGGCHH


Dataset #: 4
Motif ID: 166
Motif name: CasCAGrGGGCrsy
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0106761

Alignment:
CACCAGRGGGCRSB
----AGRKGGCR--

Original motif     Consensus sequence: CACCAGRGGGCRSB Reverse complement motif     Consensus sequence: BSKGCCCKCTGGTG


Dataset #: 4
Motif ID: 163
Motif name: gwGGCCAGmAGAGGGCrby
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.016658

Alignment:
KBKGCCCTCTYCTGGCCHV
--KGCCYKCT---------

Original motif     Consensus sequence: VHGGCCAGMAGAGGGCRBY Reverse complement motif     Consensus sequence: KBKGCCCTCTYCTGGCCHV


Dataset #: 4
Motif ID: 164
Motif name: asyAGrkGGCRGCAga
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0201849

Alignment:
ASYAGRKGGCAGCABH
---AGRKGGCR-----

Original motif     Consensus sequence: ASYAGRKGGCAGCABH Reverse complement motif     Consensus sequence: HBTGCTGCCYMCTKST


Dataset #: 3 Motif ID: 127 Motif name: YY1

Original motif     Consensus sequence: RCCATB Reverse complement motif     Consensus sequence: BATGGM

Best Matches for Top Significant Motif ID 127 (Highest to Lowest)

Dataset #: 2
Motif ID: 61
Motif name: Motif 61
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.00122549

Alignment:
AGATGGY
BATGGM-

Original motif     Consensus sequence: AGATGGY Reverse complement motif     Consensus sequence: KCCATCT


Dataset #: 1
Motif ID: 12
Motif name: Motif 12
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.00857843

Alignment:
GAGCCATC
RCCATB--

Original motif     Consensus sequence: GATGGCTC Reverse complement motif     Consensus sequence: GAGCCATC


Dataset #: 4
Motif ID: 145
Motif name: grCCACyAGAkG
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.022036

Alignment:
CYTCTKGTGGHH
-----BATGGM-

Original motif     Consensus sequence: DDCCACYAGAKG Reverse complement motif     Consensus sequence: CYTCTKGTGGHH


Dataset #: 4
Motif ID: 138
Motif name: grCCACyAGAkG
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0223679

Alignment:
DDCCACYAGAKG
-RCCATB-----

Original motif     Consensus sequence: DDCCACYAGAKG Reverse complement motif     Consensus sequence: CYTCTMGTGGHH


Dataset #: 4
Motif ID: 156
Motif name: rgyGCCMyCTksTGGccd
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0275501

Alignment:
DDGCCASYAGMGGGCKVM
--RCCATB----------

Original motif     Consensus sequence: RVYGCCCYCTKSTGGCHD Reverse complement motif     Consensus sequence: DDGCCASYAGMGGGCKVM


Dataset #: 2 Motif ID: 48 Motif name: Motif 48

Original motif     Consensus sequence: CCACYAGR Reverse complement motif     Consensus sequence: MCTKGTGG

Best Matches for Top Significant Motif ID 48 (Highest to Lowest)

Dataset #: 1
Motif ID: 21
Motif name: Motif 21
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.00903109

Alignment:
CCACYAGG
CCACYAGR

Original motif     Consensus sequence: CCACYAGG Reverse complement motif     Consensus sequence: CCTKGTGG


Dataset #: 4
Motif ID: 145
Motif name: grCCACyAGAkG
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0155354

Alignment:
DDCCACYAGAKG
--CCACYAGR--

Original motif     Consensus sequence: DDCCACYAGAKG Reverse complement motif     Consensus sequence: CYTCTKGTGGHH


Dataset #: 4
Motif ID: 158
Motif name: grCCACwAGrk
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0192652

Alignment:
DDCCACWAGRK
--CCACYAGR-

Original motif     Consensus sequence: DDCCACWAGRK Reverse complement motif     Consensus sequence: YMCTWGTGGHH


Dataset #: 4
Motif ID: 138
Motif name: grCCACyAGAkG
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0244381

Alignment:
DDCCACYAGAKG
--CCACYAGR--

Original motif     Consensus sequence: DDCCACYAGAKG Reverse complement motif     Consensus sequence: CYTCTMGTGGHH


Dataset #: 3
Motif ID: 74
Motif name: CTCF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 8
Similarity score: 0.0284404

Alignment:
YDRCCASYAGRKGGCRSYV
---CCACYAGR--------

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM


Dataset #: 2 Motif ID: 65 Motif name: Motif 65

Original motif     Consensus sequence: ARAACA Reverse complement motif     Consensus sequence: TGTTMT

Best Matches for Top Significant Motif ID 65 (Highest to Lowest)

Dataset #: 4
Motif ID: 141
Motif name: raCAAAACam
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.00122368

Alignment:
DACAAAACAH
---ARAACA-

Original motif     Consensus sequence: DACAAAACAH Reverse complement motif     Consensus sequence: HTGTTTTGTD


Dataset #: 1
Motif ID: 44
Motif name: Motif 44
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0101983

Alignment:
GDAAACA
-ARAACA

Original motif     Consensus sequence: GDAAACA Reverse complement motif     Consensus sequence: TGTTTDC


Dataset #: 4
Motif ID: 159
Motif name: kkAAGAGCAsy
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0232212

Alignment:
HVTGCTCTTBH
--TGTTMT---

Original motif     Consensus sequence: DBAAGAGCAVH Reverse complement motif     Consensus sequence: HVTGCTCTTBH


Dataset #: 3
Motif ID: 121
Motif name: TAL1TCF3
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.0330056

Alignment:
HVAMCATCTGKT
ARAACA------

Original motif     Consensus sequence: HVAMCATCTGKT Reverse complement motif     Consensus sequence: ARCAGATGRTVD


Dataset #: 1
Motif ID: 2
Motif name: Motif 2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0333069

Alignment:
AAAAHAAA
ARAACA--

Original motif     Consensus sequence: AAAAHAAA Reverse complement motif     Consensus sequence: TTTDTTTT


Dataset #: 1 Motif ID: 5 Motif name: Motif 5

Original motif     Consensus sequence: CCCCDCCC Reverse complement motif     Consensus sequence: GGGDGGGG

Best Matches for Top Significant Motif ID 5 (Highest to Lowest)

Dataset #: 2
Motif ID: 59
Motif name: Motif 59
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.00363191

Alignment:
CCCCRCCC
CCCCDCCC

Original motif     Consensus sequence: CCCCRCCC Reverse complement motif     Consensus sequence: GGGKGGGG


Dataset #: 4
Motif ID: 155
Motif name: csCSCCdCCCcs
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.00464015

Alignment:
VBCCCCDCCCHV
--CCCCDCCC--

Original motif     Consensus sequence: VBCCCCDCCCHV Reverse complement motif     Consensus sequence: VDGGGDGGGGBV


Dataset #: 3
Motif ID: 89
Motif name: Klf4
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0352587

Alignment:
GCCYCMCCCD
-CCCCDCCC-

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD


Dataset #: 4
Motif ID: 154
Motif name: csCsCCTCCcc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0361349

Alignment:
VBCCCCTCCHB
--CCCCDCCC-

Original motif     Consensus sequence: VBCCCCTCCHB Reverse complement motif     Consensus sequence: BDGGAGGGGBV


Dataset #: 3
Motif ID: 116
Motif name: SP1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0368066

Alignment:
CCCCKCCCCC
CCCCDCCC--

Original motif     Consensus sequence: CCCCKCCCCC Reverse complement motif     Consensus sequence: GGGGGYGGGG


Dataset #: 3 Motif ID: 72 Motif name: ArntAhr

Original motif     Consensus sequence: YGCGTG Reverse complement motif     Consensus sequence: CACGCM

Best Matches for Top Significant Motif ID 72 (Highest to Lowest)

Dataset #: 4
Motif ID: 134
Motif name: ssCGwGCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0128947

Alignment:
BSCGWGCGBV
YGCGTG----

Original motif     Consensus sequence: BSCGWGCGBV Reverse complement motif     Consensus sequence: VBCGCWCGSB


Dataset #: 1
Motif ID: 20
Motif name: Motif 20
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0206428

Alignment:
MACGTG
YGCGTG

Original motif     Consensus sequence: CACGTR Reverse complement motif     Consensus sequence: MACGTG


Dataset #: 1
Motif ID: 42
Motif name: Motif 42
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0259081

Alignment:
CGCGCSG
-CACGCM

Original motif     Consensus sequence: CGCGCSG Reverse complement motif     Consensus sequence: CSGCGCG


Dataset #: 4
Motif ID: 152
Motif name: yrCATGCAyr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0279287

Alignment:
BRCATGCABD
--CACGCM--

Original motif     Consensus sequence: BRCATGCABD Reverse complement motif     Consensus sequence: HVTGCATGKV


Dataset #: 2
Motif ID: 57
Motif name: Motif 57
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0315171

Alignment:
ACACACAY
-CACGCM-

Original motif     Consensus sequence: ACACACAY Reverse complement motif     Consensus sequence: KTGTGTGT


Dataset #: 3 Motif ID: 101 Motif name: NFIC

Original motif     Consensus sequence: TTGGCD Reverse complement motif     Consensus sequence: DGCCAA

Best Matches for Top Significant Motif ID 101 (Highest to Lowest)

Dataset #: 4
Motif ID: 165
Motif name: wgGCCAshAGrGGGCrsy
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 12
Number of overlap: 6
Similarity score: 0.0215379

Alignment:
HDGCCACHAGRGGGCRBY
-DGCCAA-----------

Original motif     Consensus sequence: HDGCCACHAGRGGGCRBY Reverse complement motif     Consensus sequence: KBKGCCCKCTHGTGGCHH


Dataset #: 4
Motif ID: 156
Motif name: rgyGCCMyCTksTGGccd
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 12
Number of overlap: 6
Similarity score: 0.026631

Alignment:
DDGCCASYAGMGGGCKVM
-DGCCAA-----------

Original motif     Consensus sequence: RVYGCCCYCTKSTGGCHD Reverse complement motif     Consensus sequence: DDGCCASYAGMGGGCKVM


Dataset #: 4
Motif ID: 151
Motif name: agrCCAGmAGrg
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.0273632

Alignment:
CKCTRCTGGCVH
-----TTGGCD-

Original motif     Consensus sequence: HVGCCAGMAGRG Reverse complement motif     Consensus sequence: CKCTRCTGGCVH


Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0280507

Alignment:
SWGCCACC
-DGCCAA-

Original motif     Consensus sequence: GGTGGCWS Reverse complement motif     Consensus sequence: SWGCCACC


Dataset #: 4
Motif ID: 163
Motif name: gwGGCCAGmAGAGGGCrby
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0280858

Alignment:
KBKGCCCTCTYCTGGCCHV
-----------TTGGCD--

Original motif     Consensus sequence: VHGGCCAGMAGAGGGCRBY Reverse complement motif     Consensus sequence: KBKGCCCTCTYCTGGCCHV


Results created by MOTIFSIM on 02-23-2016 15:12:01
Runtime: 180.27 seconds.

MOTIFSIM is written by Ngoc Tam L. Tran
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