**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 1 Number of top significant motifs: 1 Number of best matches: 1 Similarity cutoff: >= 0.75 Matching motif database: None Motif tree: No Combined similar motifs: No Output file type: All Output file format: Text Input files and motif counts File name Count of motifs Dataset # U20230323-memeInput2.txt 2 1 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** **************************************************************************************************************************************************************************************************** ****************************************************************** Top 1 Significant Motifs - Global Matching (Highest to Lowest) ****************************************************************** There is no global matching for 1 motif file. **************************************************************************************************************************************************************************************************** **************************************************************** Significant Motifs - Global and Local Matching (Highest to Lowest) **************************************************************** Dataset #: 1 Motif ID: 1 Motif name: Motif 1 Original motif 0.000000 0.598592 0.176056 0.225352 0.000000 0.626761 0.000000 0.373239 0.000000 0.000000 0.000000 1.000000 0.000000 0.408451 0.514084 0.077465 0.091549 0.823944 0.028169 0.056338 0.133803 0.690141 0.000000 0.176056 0.042254 0.281690 0.000000 0.676056 0.007042 0.683099 0.197183 0.112676 0.197183 0.000000 0.000000 0.802817 0.000000 0.084507 0.690141 0.225352 0.091549 0.605634 0.169014 0.133803 Consensus sequence: CYTSCCTCTGC Reverse complement motif 0.091549 0.169014 0.605634 0.133803 0.000000 0.690141 0.084507 0.225352 0.802817 0.000000 0.000000 0.197183 0.007042 0.197183 0.683099 0.112676 0.676056 0.281690 0.000000 0.042254 0.133803 0.000000 0.690141 0.176056 0.091549 0.028169 0.823944 0.056338 0.000000 0.514084 0.408451 0.077465 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.626761 0.373239 0.000000 0.176056 0.598592 0.225352 Consensus sequence: GCAGAGGSAKG ******************************************************************* Best Matches for Significant Motif ID 1 (Highest to Lowest) ******************************************************************* Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 Motif 2 Reverse Complement Original Motif Forward 9 6 0.009769 Original motif 0.833333 0.000000 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 0.875000 0.000000 0.000000 0.125000 0.083333 0.875000 0.041667 0.000000 0.958333 0.000000 0.000000 0.041667 0.125000 0.875000 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.666667 0.000000 0.208333 0.125000 0.000000 0.833333 0.041667 0.125000 0.791667 0.125000 0.083333 0.000000 0.000000 1.000000 0.000000 0.000000 0.708334 0.000000 0.083333 0.208333 0.000000 0.958333 0.000000 0.041667 Consensus sequence: ACACACACACACAC Reverse complement motif 0.000000 0.000000 0.958333 0.041667 0.208333 0.000000 0.083333 0.708334 0.000000 0.000000 1.000000 0.000000 0.000000 0.125000 0.083333 0.791667 0.000000 0.041667 0.833333 0.125000 0.125000 0.000000 0.208333 0.666667 0.000000 0.000000 0.750000 0.250000 0.000000 0.166667 0.000000 0.833333 0.125000 0.000000 0.875000 0.000000 0.041667 0.000000 0.000000 0.958333 0.083333 0.041667 0.875000 0.000000 0.125000 0.000000 0.000000 0.875000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.833333 Consensus sequence: GTGTGTGTGTGTGT Alignment: ACACACACACACAC----- --------GCAGAGGSAKG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- **************************************************************************************************************************************************************************************************** ********************************************************************** Best Matches for Each Motif (Highest to Lowest) ***************************************************************************** Dataset #: 1 Motif ID: 1 Motif name: Motif 1 Original motif 0.000000 0.598592 0.176056 0.225352 0.000000 0.626761 0.000000 0.373239 0.000000 0.000000 0.000000 1.000000 0.000000 0.408451 0.514084 0.077465 0.091549 0.823944 0.028169 0.056338 0.133803 0.690141 0.000000 0.176056 0.042254 0.281690 0.000000 0.676056 0.007042 0.683099 0.197183 0.112676 0.197183 0.000000 0.000000 0.802817 0.000000 0.084507 0.690141 0.225352 0.091549 0.605634 0.169014 0.133803 Consensus sequence: CYTSCCTCTGC Reserve complement motif 0.091549 0.169014 0.605634 0.133803 0.000000 0.690141 0.084507 0.225352 0.802817 0.000000 0.000000 0.197183 0.007042 0.197183 0.683099 0.112676 0.676056 0.281690 0.000000 0.042254 0.133803 0.000000 0.690141 0.176056 0.091549 0.028169 0.823944 0.056338 0.000000 0.514084 0.408451 0.077465 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.626761 0.373239 0.000000 0.176056 0.598592 0.225352 Consensus sequence: GCAGAGGSAKG ************************************************************************ Best Matches for Motif ID 1 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 Motif 2 Reverse Complement Original Motif Forward 9 6 0.009769 Original motif 0.833333 0.000000 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 0.875000 0.000000 0.000000 0.125000 0.083333 0.875000 0.041667 0.000000 0.958333 0.000000 0.000000 0.041667 0.125000 0.875000 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.666667 0.000000 0.208333 0.125000 0.000000 0.833333 0.041667 0.125000 0.791667 0.125000 0.083333 0.000000 0.000000 1.000000 0.000000 0.000000 0.708334 0.000000 0.083333 0.208333 0.000000 0.958333 0.000000 0.041667 Consensus sequence: ACACACACACACAC Reverse complement motif 0.000000 0.000000 0.958333 0.041667 0.208333 0.000000 0.083333 0.708334 0.000000 0.000000 1.000000 0.000000 0.000000 0.125000 0.083333 0.791667 0.000000 0.041667 0.833333 0.125000 0.125000 0.000000 0.208333 0.666667 0.000000 0.000000 0.750000 0.250000 0.000000 0.166667 0.000000 0.833333 0.125000 0.000000 0.875000 0.000000 0.041667 0.000000 0.000000 0.958333 0.083333 0.041667 0.875000 0.000000 0.125000 0.000000 0.000000 0.875000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.833333 Consensus sequence: GTGTGTGTGTGTGT Alignment: ACACACACACACAC----- --------GCAGAGGSAKG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 2 Motif name: Motif 2 Original motif 0.833333 0.000000 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 0.875000 0.000000 0.000000 0.125000 0.083333 0.875000 0.041667 0.000000 0.958333 0.000000 0.000000 0.041667 0.125000 0.875000 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.666667 0.000000 0.208333 0.125000 0.000000 0.833333 0.041667 0.125000 0.791667 0.125000 0.083333 0.000000 0.000000 1.000000 0.000000 0.000000 0.708334 0.000000 0.083333 0.208333 0.000000 0.958333 0.000000 0.041667 Consensus sequence: ACACACACACACAC Reserve complement motif 0.000000 0.000000 0.958333 0.041667 0.208333 0.000000 0.083333 0.708334 0.000000 0.000000 1.000000 0.000000 0.000000 0.125000 0.083333 0.791667 0.000000 0.041667 0.833333 0.125000 0.125000 0.000000 0.208333 0.666667 0.000000 0.000000 0.750000 0.250000 0.000000 0.166667 0.000000 0.833333 0.125000 0.000000 0.875000 0.000000 0.041667 0.000000 0.000000 0.958333 0.083333 0.041667 0.875000 0.000000 0.125000 0.000000 0.000000 0.875000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.833333 Consensus sequence: GTGTGTGTGTGTGT ************************************************************************ Best Matches for Motif ID 2 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 Motif 1 Reverse Complement Original Motif Backward 6 6 0.009769 Original motif 0.000000 0.598592 0.176056 0.225352 0.000000 0.626761 0.000000 0.373239 0.000000 0.000000 0.000000 1.000000 0.000000 0.408451 0.514084 0.077465 0.091549 0.823944 0.028169 0.056338 0.133803 0.690141 0.000000 0.176056 0.042254 0.281690 0.000000 0.676056 0.007042 0.683099 0.197183 0.112676 0.197183 0.000000 0.000000 0.802817 0.000000 0.084507 0.690141 0.225352 0.091549 0.605634 0.169014 0.133803 Consensus sequence: CYTSCCTCTGC Reverse complement motif 0.091549 0.169014 0.605634 0.133803 0.000000 0.690141 0.084507 0.225352 0.802817 0.000000 0.000000 0.197183 0.007042 0.197183 0.683099 0.112676 0.676056 0.281690 0.000000 0.042254 0.133803 0.000000 0.690141 0.176056 0.091549 0.028169 0.823944 0.056338 0.000000 0.514084 0.408451 0.077465 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.626761 0.373239 0.000000 0.176056 0.598592 0.225352 Consensus sequence: GCAGAGGSAKG Alignment: --------CYTSCCTCTGC GTGTGTGTGTGTGT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 03-23-2023 11:12:37 Runtime: 0.005324 seconds MOTIFSIM is written by Ngoc Tam L. Tran