**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 1 Number of top significant motifs: 1 Number of best matches: 1 Similarity cutoff: >= 0.75 Matching motif database: None Motif tree: No Combined similar motifs: No Output file type: All Output file format: Text Input files and motif counts File name Count of motifs Dataset # U20230323-memeInput2.txt 2 1 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** **************************************************************************************************************************************************************************************************** ****************************************************************** Top 1 Significant Motifs - Global Matching (Highest to Lowest) ****************************************************************** There is no global matching for 1 motif file. **************************************************************************************************************************************************************************************************** **************************************************************** Significant Motifs - Global and Local Matching (Highest to Lowest) **************************************************************** Dataset #: 1 Motif ID: 1 Motif name: Motif 1 Consensus sequence (original motif): CYTSCCTCTGC Consensus sequence (reverse complement motif): GCAGAGGSAKG ************************************************************** Best Matches for Significant Motif ID 1 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 Motif 2 Reverse Complement Original Motif Forward 9 6 0.00976869 Consensus sequence (original motif): ACACACACACACAC Consensus sequence (reverse complement motif): GTGTGTGTGTGTGT Alignment: ACACACACACACAC----- --------GCAGAGGSAKG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- **************************************************************************************************************************************************************************************************** ********************************************************************** Best Matches for Each Motif (Highest to Lowest) ***************************************************************************** Dataset #: 1 Motif ID: 1 Motif name: Motif 1 Consensus sequence (original motif): CYTSCCTCTGC Consensus sequence (reverse complement motif): GCAGAGGSAKG ************************************************************************ Best Matches for Motif ID 1 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 Motif 2 Reverse Complement Original Motif Forward 9 6 0.00976869 Consensus sequence (original motif): ACACACACACACAC Consensus sequence (reverse complement motif): GTGTGTGTGTGTGT Alignment: ACACACACACACAC----- --------GCAGAGGSAKG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 2 Motif name: Motif 2 Consensus sequence (original motif): ACACACACACACAC Consensus sequence (reverse complement motif): GTGTGTGTGTGTGT ************************************************************************ Best Matches for Motif ID 2 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 Motif 1 Reverse Complement Original Motif Backward 6 6 0.00976869 Consensus sequence (original motif): CYTSCCTCTGC Consensus sequence (reverse complement motif): GCAGAGGSAKG Alignment: --------CYTSCCTCTGC GTGTGTGTGTGTGT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 03-23-2023 11:12:37 Runtime: 0.00532379 seconds MOTIFSIM is written by Ngoc Tam L. 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