**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 5 Number of top significant motifs: 5 Number of best matches: 5 Similarity cutoff: >= 0.75 Matching motif database: None Motif tree: Yes Combined similar motifs: Yes Output file type: All Output file format: Text Input files and motif counts File name Count of motifs Dataset # DREME_DM230.txt 1 1 MEME_DM230.txt 20 2 PScanChIP_DM230.txt 14 3 RSAT_peak-motifs_DM230.txt 10 4 W-ChIPMotifs_DM230.txt 11 5 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** *************************************************************** Combined Motifs for Top Best Match Motif ID 1 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 1 csGCCCCGCCCCsc Original Motif Reverse Complement GGCGGGGC BBGGGGCGGGGCVD VDGGCGGGGCBBGG Direction: Backward Position #: 3 Overlap #: 8 Alignment: ----GGCGGGGC-- BBGGGGCGGGGCVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Reverse Complement Original Motif CCBBGCCCCGCCHV BCCGCCCCGCCCCBB BCCGCCCCGSCCCCGCCHV Direction: Forward Position #: 6 Overlap #: 10 Alignment: -----CCBBGCCCCGCCHV BCCGCCCCGCCCCBB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Original Motif BCCGCCCCGSCCCCGCCHV CSKCCCCGCCCCSY BCCGCCCCSGCCCCGCCCCSY Direction: Forward Position #: 8 Overlap #: 12 Alignment: BCCGCCCCGSCCCCGCCHV-- -------CSKCCCCGCCCCSY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Reverse Complement BCCGCCCCSGCCCCGCCCCSY GCVCCGCCMCCYCC BCCGCCCCSCCCCSSCCCCBCC Direction: Forward Position #: 9 Overlap #: 13 Alignment: BCCGCCCCSGCCCCGCCCCSY- --------GCVCCGCCMCCYCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Klf4 Combined Motif Reverse Complement Original Motif GGBGGGGSSGGGGSGGGGCGGB DGGGYGKGGC GGBGGGGSSGGGGBGGGGCGGB Direction: Forward Position #: 10 Overlap #: 10 Alignment: GGBGGGGSSGGGGSGGGGCGGB ---------DGGGYGKGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Reverse Complement GGBGGGGSSGGGGBGGGGCGGB VAGGCCBBGGCVBB GGBGGGGSSVRGGCSKGGSSVBB Direction: Forward Position #: 10 Overlap #: 13 Alignment: GGBGGGGSSGGGGBGGGGCGGB- ---------VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 2 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 TFM2 Original Motif Original Motif RGRAGARRGARRAR RGRGGAGRRGGHGGDG RGRAGRRGGVRRRGRG Direction: Backward Position #: 1 Overlap #: 14 Alignment: --RGRAGARRGARRAR RGRGGAGRRGGHGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Reverse Complement Reverse Complement CMCKMMBCCMKCTMCK MSGKKRCGCWDCABTGBBCD MSGKKRCSCHKCMBBVHKCTMCK Direction: Forward Position #: 8 Overlap #: 13 Alignment: -------CMCKMMBCCMKCTMCK MSGKKRCGCWDCABTGBBCD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Reverse Complement Original Motif RGRAGRDVBVYGRDGSGKRYCSR HDWVAAAHAAAAAMAAAMWWWHBWA HDWVAAAHAARRARARVVHHDDDRVGKRYCSR Direction: Forward Position #: 10 Overlap #: 16 Alignment: ---------RGRAGRDVBVYGRDGSGKRYCSR HDWVAAAHAAAAAMAAAMWWWHBWA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Reverse Complement MSGKKRCBMHDHHHBBKTMTKKTTHTTTVWBH KKKAGGDGGAKKMGBBGKMG MSGKKRCBMHDHHHBKKDVKKKKDBTTKBDDBMG Direction: Forward Position #: 15 Overlap #: 18 Alignment: MSGKKRCBMHDHHHBBKTMTKKTTHTTTVWBH-- --------------KKKAGGDGGAKKMGBBGKMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Original Motif MSGKKRCBMHDHHHBKKDVKKKKDBTTKBDDBMG WTKTTTTTHWTTTTTTBT MSGKKRCBMHDHWBTTTTBBDTTWTTTKHDDBMG Direction: Forward Position #: 12 Overlap #: 18 Alignment: MSGKKRCBMHDHHHBKKDVKKKKDBTTKBDDBMG -----------WTKTTTTTHWTTTTTTBT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 3 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 TFM11 Original Motif Original Motif AWAAAWTWAAASWA HDWVAAAHAAAAAMAAAMWWWHBWA HDWVAAAHAAAWWAAAAVWWWHBWA Direction: Forward Position #: 7 Overlap #: 14 Alignment: ------AWAAAWTWAAASWA----- HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Reverse Complement HDWVAAAHAAAWWAAAAVWWWHBWA ABAAAAAAWHAAAAARAW HDWVAAAHAAADAAAAAAWDADAAARAW Direction: Forward Position #: 11 Overlap #: 15 Alignment: HDWVAAAHAAAWWAAAAVWWWHBWA--- ----------ABAAAAAAWHAAAAARAW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif HDWVAAAHAAADAAAAAAWDADAAARAW ATKAAWTTTTRMAABAHHTW HDWVAAAHAAADAWAAAAWTHWRAAAWAHHTW Direction: Forward Position #: 13 Overlap #: 16 Alignment: HDWVAAAHAAADAAAAAAWDADAAARAW---- ------------ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Reverse Complement Reverse Complement WAHHTWTTTKWHAWTTTTWTDTTTHTTTVWBH TGATTTTAWKATTT WAHHTWTTTKWHAWTKWTTTTWWTATTTVWBH Direction: Forward Position #: 15 Overlap #: 14 Alignment: WAHHTWTTTKWHAWTTTTWTDTTTHTTTVWBH --------------TGATTTTAWKATTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Reverse Complement HDWVAAATAWWAAAAWYAWTHWRAAAWAHHTW TWAAWTTVTGAAAAAHWW HDWVAAATAWWAAAWWHAWTTHWDAAAAAHWW Direction: Forward Position #: 15 Overlap #: 18 Alignment: HDWVAAATAWWAAAAWYAWTHWRAAAWAHHTW --------------TWAAWTTVTGAAAAAHWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 4 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 TFM11 Original Motif Original Motif AAAAWTTRCWT HDWVAAAHAAAAAMAAAMWWWHBWA HDWVAAAHAAAAAAAAAWWTAYHWA Direction: Forward Position #: 14 Overlap #: 11 Alignment: -------------AAAAWTTRCWT- HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif HDWVAAAHAAAAAAAAAWWTAYHWA ATKAAWTTTTRMAABAHHTW HDWVAAAHAAAHDAAAWTTTRMAWDAHHTW Direction: Forward Position #: 11 Overlap #: 15 Alignment: HDWVAAAHAAAAAAAAAWWTAYHWA----- ----------ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Original Motif WAHHTDWTRKAAAWTTTDHTTTHTTTVWBH WTKTTTTTHWTTTTTTBT WAHHTDWTRKAAAWTTTTTTTWHTTTTTTHT Direction: Forward Position #: 14 Overlap #: 17 Alignment: WAHHTDWTRKAAAWTTTDHTTTHTTTVWBH- -------------WTKTTTTTHWTTTTTTBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Original Motif Reverse Complement WAHHTDWTRKAAAWTTTTTTTWHTTTTTTHT AAATTKTATTTAWT WAAATTKTATWTAWTTTTTTTWHTTTTTTHT Direction: Forward Position #: 2 Overlap #: 14 Alignment: WAHHTDWTRKAAAWTTTTTTTWHTTTTTTHT -AAATTKTATTTAWT---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Original Motif AHAAAAAAHWAAAAAAAWTAWATARAATTTW AATHATATWTHAAA AHAAAAAAHWAAAAADAWTAWWTAAAATTTW Direction: Forward Position #: 14 Overlap #: 14 Alignment: AHAAAAAAHWAAAAAAAWTAWATARAATTTW -------------AATHATATWTHAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 5 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Motif 3 Reverse Complement Reverse Complement AAATTKTATTTAWT TWSTTTWAWTTTWT WAATTTTATTTWWT Direction: Backward Position #: 1 Overlap #: 14 Alignment: AAATTKTATTTAWT TWSTTTWAWTTTWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Reverse Complement WAATTTTATTTWWT TGATTTTAWKATTT TRATTTTAWTWTTT Direction: Forward Position #: 1 Overlap #: 14 Alignment: WAATTTTATTTWWT TGATTTTAWKATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Reverse Complement Original Motif AAAWAWTAAAATMA HDWVAAAHAAAAAMAAAMWWWHBWA HDWVAAAAWAAWAAAAWMWWWHBWA Direction: Forward Position #: 6 Overlap #: 14 Alignment: -----AAAWAWTAAAATMA------ HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Reverse Complement HDWVAAAAWAAWAAAAWMWWWHBWA ABAAAAAAWHAAAAARAW HDWVAAAAWAADAAAAWAWDADAAARAW Direction: Forward Position #: 11 Overlap #: 15 Alignment: HDWVAAAAWAAWAAAAWMWWWHBWA--- ----------ABAAAAAAWHAAAAARAW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Reverse Complement Reverse Complement WTKTTTDTDWTWTTTTDTTWTTTTVWBH WWTAKTTCDKAATT WTKTTTDTDWTWTTWTTTYWKWWTHWBH Direction: Forward Position #: 12 Overlap #: 14 Alignment: WTKTTTDTDWTWTTTTDTTWTTTTVWBH -----------WWTAKTTCDKAATT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 6 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 TFM3 Reverse Complement Original Motif WWTAKTTCDKAATT WWHTTTTTCABAAWTTWA TWAWWTWKTTCWKAATTW Direction: Backward Position #: 4 Overlap #: 14 Alignment: -WWTAKTTCDKAATT--- WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Original Motif Reverse Complement TWAWWTWKTTCWKAATTW WAHHTVTTYKAAAAWTTRAT WAHHTVTTTTAWAWWTTWMWKAATTW Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------TWAWWTWKTTCWKAATTW WAHHTVTTYKAAAAWTTRAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Reverse Complement WAHHTVTTTTAWAWWTTWMWKAATTW TWVHWWWYTTTYTTTTTHTTTVWBH WAHHTVTTTTAHWDWTWWHTTWHTTWTTHTTTVWBH Direction: Forward Position #: 12 Overlap #: 15 Alignment: WAHHTVTTTTAWAWWTTWMWKAATTW---------- -----------TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Original Motif WAHHTVTTTTAHWDWTWWHTTWHTTWTTHTTTVWBH WTKTTTTTHWTTTTTTBT WAHHTVTTTTAHWDWTWTBTTTDTHWTTDTTTBWBH Direction: Forward Position #: 17 Overlap #: 18 Alignment: WAHHTVTTTTAHWDWTWWHTTWHTTWTTHTTTVWBH ----------------WTKTTTTTHWTTTTTTBT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Original Motif Reverse Complement WAHHTVTTTTAHWDWTWTBTTTDTHWTTDTTTBWBH AAATTKTATTTAWT AAATTKTWTTTAWTDWTWTBTTTDTHWTTDTTTBWBH Direction: Forward Position #: 2 Overlap #: 13 Alignment: -WAHHTVTTTTAHWDWTWTBTTTDTHWTTDTTTBWBH AAATTKTATTTAWT----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 7 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 csGCCCCGCCCCsc Original Motif Original Motif CSKCCCCGCCCCSY HVGCCCCGCCCCBB CSGCCCCGCCCCSB Direction: Forward Position #: 1 Overlap #: 14 Alignment: CSKCCCCGCCCCSY HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Reverse Complement Reverse Complement VSGGGGCGGGGCSG BBGGGGCGGGGCGGB BBGGGGCGGGGCGGGGCSG Direction: Forward Position #: 6 Overlap #: 10 Alignment: -----VSGGGGCGGGGCSG BBGGGGCGGGGCGGB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Reverse Complement Original Motif CSGCCCCGCCCCGCCCCBB CYYCBBCYYYTCCHCCTYYY CYYCBBCYYBKCCCCSCCCCGCCCCBB Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------CSGCCCCGCCCCGCCCCBB CYYCBBCYYYTCCHCCTYYY------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Reverse Complement BBGGGGCGGGGSGGGGYBKMGBBGKMG MSGKKRCGCWDCABTGBBCD BBGGGGCGGGGVSGKGVVGCKBBVBHGBBCD Direction: Forward Position #: 12 Overlap #: 16 Alignment: BBGGGGCGGGGSGGGGYBKMGBBGKMG---- -----------MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Reverse Complement HGVBCHBVBVYGCVBCYCSVCCCCGCCCCBB CHCCBCCKMCTCCKCM HGVBCHBVBVYGCSHCCHCCBCCYSCYCCBB Direction: Forward Position #: 14 Overlap #: 16 Alignment: HGVBCHBVBVYGCVBCYCSVCCCCGCCCCBB -------------CHCCBCCKMCTCCKCM-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 8 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Motif 3 Reverse Complement Reverse Complement TGATTTTAWKATTT TWSTTTWAWTTTWT TGATTTTAWTWTTT Direction: Backward Position #: 1 Overlap #: 14 Alignment: TGATTTTAWKATTT TWSTTTWAWTTTWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM1 Original Motif Original Motif TGATTTTAWTWTTT WTKTTTTTHWTTTTTTBT WTKTTTTKVTTTTWTTHTTT Direction: Forward Position #: 7 Overlap #: 12 Alignment: ------TGATTTTAWTWTTT WTKTTTTTHWTTTTTTBT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Reverse Complement Reverse Complement AAAHAAWAAAABRAAAARAW AAATTKTATTTAWT AAAHAAWAAAWTKWAWWTAWT Direction: Forward Position #: 8 Overlap #: 13 Alignment: AAAHAAWAAAABRAAAARAW- -------AAATTKTATTTAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Original Motif Original Motif AAAHAAWAAAWTKWAWWTAWT HDWVAAAHAAAAAMAAAMWWWHBWA HDWVAAAHAAAAAAAAAAAWWDDAHWTAWT Direction: Forward Position #: 10 Overlap #: 16 Alignment: ---------AAAHAAWAAAWTKWAWWTAWT HDWVAAAHAAAAAMAAAMWWWHBWA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Reverse Complement HDWVAAAHAAAAAAAAAAAWWDDAHWTAWT WAHHTVTTYKAAAAWTTRAT HDWVAAAHAAAAAWAWWWATTHKAAAWWWTRAT Direction: Forward Position #: 14 Overlap #: 17 Alignment: HDWVAAAHAAAAAAAAAAAWWDDAHWTAWT--- -------------WAHHTVTTYKAAAAWTTRAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 9 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 TFM13 Reverse Complement Reverse Complement TTTDAWATATHATT WAHHTVTTYKAAAAWTTRAT TTTKAAAWWTWRWTWAHHTV Direction: Backward Position #: 1 Overlap #: 14 Alignment: ------TTTDAWATATHATT WAHHTVTTYKAAAAWTTRAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif BAHHTWAWKWAWWTTTYAAA WWHTTTTTCABAAWTTWA BAHHTWAWTWWTWTTTCAHAAWTTWA Direction: Forward Position #: 9 Overlap #: 12 Alignment: BAHHTWAWKWAWWTTTYAAA------ --------WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Original Motif BAHHTWAWTWWTWTTTCAHAAWTTWA WTKTTTTTHWTTTTTTBT BAHHTWAWTWWTWTTTYWHAATTTTWTBT Direction: Forward Position #: 12 Overlap #: 15 Alignment: BAHHTWAWTWWTWTTTCAHAAWTTWA--- -----------WTKTTTTTHWTTTTTTBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Reverse Complement BAHHTWAWTWWTWTTTYWHAATTTTWTBT TWVHWWWYTTTYTTTTTHTTTVWBH BAHHTWAWTWWTTTHTTWHHWTTTTWTTTHTTTVWBH Direction: Forward Position #: 13 Overlap #: 17 Alignment: BAHHTWAWTWWTWTTTYWHAATTTTWTBT-------- ------------TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Original Motif HDWVAAAHAAAWAAAAWHHWAAHAAAWWAWTWAHHTV AWAAAWTWAAASWA HDWVAAAHAAAWAAAAAHAWAWWAAAADWWTWAHHTV Direction: Forward Position #: 17 Overlap #: 14 Alignment: HDWVAAAHAAAWAAAAWHHWAAHAAAWWAWTWAHHTV ----------------AWAAAWTWAAASWA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 10 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 Motif 11 Reverse Complement Original Motif AWTTATGAAA ATTTWATGAAA AWTTTATGAAA Direction: Forward Position #: 2 Overlap #: 10 Alignment: -AWTTATGAAA ATTTWATGAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Original Motif Original Motif AWTTTATGAAA AATTYDGAARTAWW AATTTAKRAAAAWW Direction: Forward Position #: 1 Overlap #: 11 Alignment: AWTTTATGAAA--- AATTYDGAARTAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Original Motif AATTTAKRAAAAWW AAATRWTAAAATCA AAWTDATAAAAWMA Direction: Forward Position #: 1 Overlap #: 14 Alignment: AATTTAKRAAAAWW AAATRWTAAAATCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Original Motif Reverse Complement AAWTDATAAAAWMA TWAAWTTVTGAAAAAHWW TWAAWTWAWKWAWAAAAWMA Direction: Forward Position #: 7 Overlap #: 12 Alignment: ------AAWTDATAAAAWMA TWAAWTTVTGAAAAAHWW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Original Motif TRWTTTTWTWRWTWAWTTWA ATKAAWTTTTRMAABAHHTW TRWTTTTWWTRWWWWTTTDAAABAHHTW Direction: Forward Position #: 9 Overlap #: 12 Alignment: TRWTTTTWTWRWTWAWTTWA-------- --------ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 11 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 11 Motif 5 Reverse Complement Reverse Complement TTTCATWAAAT AAATTKTATTTAWT AAATTTYATTWAAT Direction: Forward Position #: 4 Overlap #: 11 Alignment: ---TTTCATWAAAT AAATTKTATTTAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Original Motif Reverse Complement AAATTTYATTWAAT TGATTTTAWKATTT AAATTTBATTTWATKATTT Direction: Forward Position #: 6 Overlap #: 9 Alignment: AAATTTYATTWAAT----- -----TGATTTTAWKATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Reverse Complement AAATTTBATTTWATKATTT TWAAWTTVTGAAAAAHWW AAATTTDAWTTTATGATWWAHWW Direction: Forward Position #: 6 Overlap #: 14 Alignment: AAATTTBATTTWATKATTT---- -----TWAAWTTVTGAAAAAHWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 18 Combined Motif Reverse Complement Reverse Complement WWHTWWATCATAAAWTDAAATTT TTATWAWCTAA WWHTWWATCWTAWWATCWAATTT Direction: Forward Position #: 10 Overlap #: 11 Alignment: WWHTWWATCATAAAWTDAAATTT ---------TTATWAWCTAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Reverse Complement Original Motif AAATTWGATWWTAWGATWWAHWW ATMACAATAAAA ATMAMAWTARAWWWTAWGATWWAHWW Direction: Forward Position #: 4 Overlap #: 9 Alignment: ---AAATTWGATWWTAWGATWWAHWW ATMACAATAAAA-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 12 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 12 Motif 15 Reverse Complement Reverse Complement TTTGTTTT TTTTATTGTYAT YATTTTRTTKTT Direction: Backward Position #: 4 Overlap #: 8 Alignment: -TTTGTTTT--- TTTTATTGTYAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 17 Reverse Complement Original Motif AAYAAKAAAATK AAAAATGAAT AAHAATRAAWTK Direction: Forward Position #: 1 Overlap #: 10 Alignment: AAYAAKAAAATK AAAAATGAAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Reverse Complement Reverse Complement YAWTTKATTHTT AAATTKTATTTAWT AAATTBWATTTATTHTT Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----YAWTTKATTHTT AAATTKTATTTAWT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 14 Combined Motif Reverse Complement Original Motif AAHAATAAATWVAATTT AWAAATAA AAHAATAAAWADAATTT Direction: Forward Position #: 7 Overlap #: 8 Alignment: AAHAATAAATWVAATTT ------AWAAATAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Original Motif Original Motif AAHAATAAAWADAATTT ACAAWTRATTTTGA AAHAATAMAAWTAATTTTGA Direction: Forward Position #: 7 Overlap #: 11 Alignment: AAHAATAAAWADAATTT--- ------ACAAWTRATTTTGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 13 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 13 Motif 20 Reverse Complement Reverse Complement AAATCTTT AAATCTTTYAA AAATCTTTYAA Direction: Forward Position #: 1 Overlap #: 8 Alignment: AAATCTTT--- AAATCTTTYAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Original Motif Original Motif AAATCTTTYAA ACAAWTRATTTTGA ACAAAWAWYTTTBAA Direction: Forward Position #: 5 Overlap #: 10 Alignment: ----AAATCTTTYAA ACAAWTRATTTTGA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Reverse Complement Reverse Complement TTBAAAKWTWTTTGT TGATTTTAWKATTT TGATTTWAAKATTTTTGT Direction: Forward Position #: 4 Overlap #: 11 Alignment: ---TTBAAAKWTWTTTGT TGATTTTAWKATTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Original Motif Reverse Complement TGATTTWAAKATTTTTGT TWTAATCTAWGAA TTKAWTCTAWGAWTTTTGT Direction: Forward Position #: 2 Overlap #: 12 Alignment: -TGATTTWAAKATTTTTGT TWTAATCTAWGAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Reverse Complement Reverse Complement ACAAAAWTCWTAGAWTYAA AAATTKTATTTAWT ACAAAAAWMTTDTATTTAAT Direction: Forward Position #: 7 Overlap #: 13 Alignment: ACAAAAWTCWTAGAWTYAA- ------AAATTKTATTTAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 14 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 14 Motif 5 Reverse Complement Reverse Complement TTATTTWT AAATTKTATTTAWT AAATTTTATTTATT Direction: Forward Position #: 6 Overlap #: 8 Alignment: -----TTATTTWT- AAATTKTATTTAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 17 Original Motif Original Motif AAATTTTATTTATT AAAAATGAAT AAAWWTKAWTTATT Direction: Forward Position #: 1 Overlap #: 10 Alignment: AAATTTTATTTATT AAAAATGAAT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Original Motif Original Motif AAAWWTKAWTTATT ACAAWTRATTTTGA AMAAWTDATTTWKW Direction: Forward Position #: 1 Overlap #: 14 Alignment: AAAWWTKAWTTATT ACAAWTRATTTTGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Reverse Complement Original Motif WYWAAATHAWTTYT ATMACAATAAAA ATMAMAATAAAWTYT Direction: Forward Position #: 2 Overlap #: 11 Alignment: -WYWAAATHAWTTYT ATMACAATAAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Original Motif Reverse Complement ATMAMAATAAAWTYT DDTATTATTTDH ATMAMAATAWWATTTDH Direction: Forward Position #: 6 Overlap #: 10 Alignment: ATMAMAATAAAWTYT-- -----DDTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 15 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Motif 8 Original Motif Original Motif ATMACAATAAAA AAATRWTAAAATCA ATVAYAAWAWMAAA Direction: Backward Position #: 1 Overlap #: 12 Alignment: --ATMACAATAAAA AAATRWTAAAATCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Reverse Complement Reverse Complement TTTYWTWTTKTBAT TWVHWWWYTTTYTTTTTHTTTVWBH TWVHWTTTTTTHTTTTTATTTVWBH Direction: Forward Position #: 6 Overlap #: 14 Alignment: -----TTTYWTWTTKTBAT------ TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Original Motif Reverse Complement TWVHWTTTTTTHTTTTTATTTVWBH AAATTKTATTTAWT TWVHWTTTTTWAWTTTTATTTAWTH Direction: Forward Position #: 11 Overlap #: 14 Alignment: TWVHWTTTTTTHTTTTTATTTVWBH ----------AAATTKTATTTAWT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Reverse Complement TWVHWTTTTTWAWTTTTATTTAWTH TWSTTTWAWTTTWT TWVHWTTTTTWWHTTTTATTTWWTH Direction: Forward Position #: 11 Overlap #: 14 Alignment: TWVHWTTTTTWAWTTTTATTTAWTH ----------TWSTTTWAWTTTWT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Original Motif TWVHWTTTTTWWHTTTTATTTWWTH WTKTTTTTHWTTTTTTBT TWVHWTTTTTWWDTTTTWWTTTWTTTBT Direction: Forward Position #: 11 Overlap #: 15 Alignment: TWVHWTTTTTWWHTTTTATTTWWTH--- ----------WTKTTTTTHWTTTTTTBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 16 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Motif 5 Reverse Complement Original Motif TCAAAATKAWTTGT AWTAAATAYAATTT WHWAAATDHAWTKT Direction: Backward Position #: 1 Overlap #: 14 Alignment: TCAAAATKAWTTGT AWTAAATAYAATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Original Motif Original Motif WHWAAATDHAWTKT ATKAAWTTTTRMAABAHHTW ATKAAWTTYWAAAWDAAWTDT Direction: Forward Position #: 8 Overlap #: 13 Alignment: -------WHWAAATDHAWTKT ATKAAWTTTTRMAABAHHTW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Reverse Complement ADAWTTDWTTTWMAAWTTRAT TTTDAWATATHATT ADAWTTDWTTTDAAATWTDATT Direction: Forward Position #: 9 Overlap #: 13 Alignment: ADAWTTDWTTTWMAAWTTRAT- --------TTTDAWATATHATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Reverse Complement Original Motif AATDAWATTTDAAAWDAAWTDT HDAAATAATAHW AATDAWATTTDAAATAATATWT Direction: Forward Position #: 10 Overlap #: 12 Alignment: AATDAWATTTDAAAWDAAWTDT ---------HDAAATAATAHW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Original Motif Original Motif AATDAWATTTDAAATAATATWT HDAAATAATADD AATDAWATTHDAAATAATATDT Direction: Forward Position #: 10 Overlap #: 12 Alignment: AATDAWATTTDAAATAATATWT ---------HDAAATAATADD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 17 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 17 Motif 16 Reverse Complement Original Motif ATTCATTTTT ACAAWTRATTTTGA TGAMWWHWDWTTTA Direction: Backward Position #: 4 Overlap #: 10 Alignment: -ATTCATTTTT--- ACAAWTRATTTTGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Original Motif Original Motif TGAMWWHWDWTTTA AWTAAATAYAATTT ATKAAATAHAATTTA Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TGAMWWHWDWTTTA AWTAAATAYAATTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Reverse Complement Reverse Complement TAAATTHTATTTYAT TTTTATTGTYAT TTTWAWTKTYATTTYAT Direction: Forward Position #: 3 Overlap #: 10 Alignment: --TAAATTHTATTTYAT TTTTATTGTYAT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 10 Original Motif Original Motif TTTWAWTKTYATTTYAT TTTCATAAWT TTTHATWAWTATTTYAT Direction: Forward Position #: 1 Overlap #: 10 Alignment: TTTWAWTKTYATTTYAT TTTCATAAWT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Original Motif Reverse Complement TTTHATWAWTATTTYAT AWGKAAWTTTT TTTHATWWKTAWTTTWT Direction: Forward Position #: 7 Overlap #: 11 Alignment: TTTHATWAWTATTTYAT ------AWGKAAWTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 18 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 18 Motif 6 Reverse Complement Original Motif TTATWAWCTAA AATTYDGAARTAWW AWTWTWRAMDAAWW Direction: Forward Position #: 2 Overlap #: 11 Alignment: -TTATWAWCTAA-- AATTYDGAARTAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Original Motif AWTWTWRAMDAAWW AAATRWTAAAATCA AAATDTTAAAATMAW Direction: Forward Position #: 2 Overlap #: 13 Alignment: -AWTWTWRAMDAAWW AAATRWTAAAATCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Original Motif Original Motif AAATDTTAAAATMAW ATTTWATGAAA AWWTWATRAAATMAW Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAATDTTAAAATMAW ATTTWATGAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Reverse Complement Reverse Complement WTYATTTMATWAWWT WHTATTATTTDH WTYATTWYATTAWTTDH Direction: Forward Position #: 6 Overlap #: 10 Alignment: WTYATTTMATWAWWT-- -----WHTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Reverse Complement Reverse Complement HDAAWTAATMWAATKAW DDTATTATTTDH HDAAWTWATAWWATTWWH Direction: Forward Position #: 7 Overlap #: 11 Alignment: HDAAWTAATMWAATKAW- ------DDTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 19 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Motif 9 Original Motif Original Motif TTCWTAGATTAWA AATHATATWTHAAA AWTCWTAKATTAAA Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TTCWTAGATTAWA AATHATATWTHAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Reverse Complement Reverse Complement TTTAATYTAWGAWT WAHHTVTTYKAAAAWTTRAT WAHHTVTTTDAWMWWWDAAT Direction: Forward Position #: 7 Overlap #: 14 Alignment: ------TTTAATYTAWGAWT WAHHTVTTYKAAAAWTTRAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Original Motif Reverse Complement WAHHTVTTTDAWMWWWDAAT TWVHWWWYTTTYTTTTTHTTTVWBH TWVHWWWYTWTYTDTTTDWTTHWWDAAT Direction: Forward Position #: 9 Overlap #: 17 Alignment: --------WAHHTVTTTDAWMWWWDAAT TWVHWWWYTTTYTTTTTHTTTVWBH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif TWVHWWWYTWTYTDTTTDWTTHWWDAAT WWHTTTTTCABAAWTTWA TWVHWWWYTWTYTWTTTTWTYWHWAAWTWA Direction: Forward Position #: 13 Overlap #: 16 Alignment: TWVHWWWYTWTYTDTTTDWTTHWWDAAT-- ------------WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Original Motif Reverse Complement TWVHWWWYTWTYTWTTTTWTYWHWAAWTWA WWTAKTTCDKAATT TWVHWWWYTWTYTWTTWKTTCWKAATWTWA Direction: Forward Position #: 14 Overlap #: 14 Alignment: TWVHWWWYTWTYTWTTTTWTYWHWAAWTWA -------------WWTAKTTCDKAATT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 20 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 20 Motif 8 Reverse Complement Original Motif AAATCTTTYAA AAATRWTAAAATCA AAAWAATMWWWTMA Direction: Forward Position #: 4 Overlap #: 11 Alignment: ---AAATCTTTYAA AAATRWTAAAATCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Reverse Complement Original Motif TYAWWWYATTWTTT TTCWTAGATTAWA TTMWTABATTATWT Direction: Forward Position #: 1 Overlap #: 13 Alignment: TYAWWWYATTWTTT TTCWTAGATTAWA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Original Motif Reverse Complement TTMWTABATTATWT AAATTKTATTTAWT TTMWTADATTDTATTTAWT Direction: Forward Position #: 6 Overlap #: 9 Alignment: TTMWTABATTATWT----- -----AAATTKTATTTAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Reverse Complement Original Motif AWTAAATADAATBTAWRAA ACAAWTRATTTTGA ACAAWTAAWTWTRATBTAWRAA Direction: Forward Position #: 4 Overlap #: 11 Alignment: ---AWTAAATADAATBTAWRAA ACAAWTRATTTTGA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Original Motif Reverse Complement ACAAWTAAWTWTRATBTAWRAA TTTDAWATATHATT ACAAWTAAWTTTRATWTAWDAWT Direction: Forward Position #: 10 Overlap #: 13 Alignment: ACAAWTAAWTWTRATBTAWRAA- ---------TTTDAWATATHATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 21 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 21 Motif 15 Reverse Complement Reverse Complement TTTTAT TTTTATTGTYAT TTTTATTGTYAT Direction: Forward Position #: 1 Overlap #: 6 Alignment: TTTTAT------ TTTTATTGTYAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Original Motif Original Motif TTTTATTGTYAT AWTAAATAYAATTT AWTAAWTWTAWTKTYAT Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----TTTTATTGTYAT AWTAAATAYAATTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Reverse Complement Original Motif ATKAYAWTAWAWTTAWT AAATRWTAAAATCA ATKAYAAWATAWTWAAWTCA Direction: Forward Position #: 7 Overlap #: 11 Alignment: ATKAYAWTAWAWTTAWT--- ------AAATRWTAAAATCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 11 Combined Motif Reverse Complement Original Motif TGAWTTWAWTATWTTKTYAT ATTTWATGAAA TGAWTTWAATWTWWTGWHAT Direction: Forward Position #: 9 Overlap #: 11 Alignment: TGAWTTWAWTATWTTKTYAT --------ATTTWATGAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 Combined Motif Reverse Complement Reverse Complement ATHWCAWWAWATTWAAWTCA AWTTATGAAA ATHWCAAWWTATKAAAWTCA Direction: Forward Position #: 7 Overlap #: 10 Alignment: ATHWCAWWAWATTWAAWTCA ------AWTTATGAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 22 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx cccGCCCCGCCCCsb Original Motif Original Motif BBVGCCBVGGCCTV BCCGCCCCGCCCCBB BBSGCCCCGSCCYBB Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBVGCCBVGGCCTV- BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Reverse Complement Original Motif BBMGGSCGGGGCSBB RGRGGAGRRGGHGGDG RGRGGAVVAGGVSGGGGCSBB Direction: Forward Position #: 7 Overlap #: 10 Alignment: ------BBMGGSCGGGGCSBB RGRGGAGRRGGHGGDG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Reverse Complement BBSGCCCCSVCCTVVTCCKCM MSGKKRCGCWDCABTGBBCD BBSGCCCCVSSCKVCKCHKCMBTGBBCD Direction: Forward Position #: 9 Overlap #: 13 Alignment: BBSGCCCCSVCCTVVTCCKCM------- --------MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Reverse Complement HGVBCABYGRDGYGBRGSSVGGGGCSBB KKKAGGDGGAKKMGBBGKMG HGVBCABYGRDGBGBAGSBGGVGGCGBBGKMG Direction: Forward Position #: 13 Overlap #: 16 Alignment: HGVBCABYGRDGYGBRGSSVGGGGCSBB---- ------------KKKAGGDGGAKKMGBBGKMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Reverse Complement Original Motif CYYCBBCGCCVCCBSCTBCVCHKCMBTGBBCD HVGCCCCGCCCCBB CYYCBBCGCCVSCCCCGCCCCBBCMBTGBBCD Direction: Forward Position #: 10 Overlap #: 14 Alignment: CYYCBBCGCCVCCBSCTBCVCHKCMBTGBBCD ---------HVGCCCCGCCCCBB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 23 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Egr1 TFF11 Reverse Complement Reverse Complement YCGCCCACGCH GCVCCGCCMCCYCC GCVCCGCCCMCKCM Direction: Forward Position #: 4 Overlap #: 11 Alignment: ---YCGCCCACGCH GCVCCGCCMCCYCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Reverse Complement Original Motif RGYGYGGGCGGVGC RGRGGAGRRGGHGGDG RGRGGAGGVGSVGGVGGVGC Direction: Forward Position #: 7 Overlap #: 10 Alignment: ------RGYGYGGGCGGVGC RGRGGAGRRGGHGGDG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Reverse Complement RGRGGAGGVGSVGGVGGVGC KKKAGGDGGAKKMGBBGKMG RGRGGAGGDGBVGGBGGRGBMGBBGKMG Direction: Forward Position #: 9 Overlap #: 12 Alignment: RGRGGAGGVGSVGGVGGVGC-------- --------KKKAGGDGGAKKMGBBGKMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Reverse Complement RGRGGAGGDGBVGGBGGRGBMGBBGKMG BBGGGGCGGGGCGGB RGRGGAGGDGBVGSGGGGSGVGGCGGVG Direction: Forward Position #: 13 Overlap #: 15 Alignment: RGRGGAGGDGBVGGBGGRGBMGBBGKMG ------------BBGGGGCGGGGCGGB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif RGRGGAGGDGBVGSGGGGSGVGGCGGVG BBVGCCBVGGCCTV RGRGGAGGDGBVBBGGSSSVGGSCKBVG Direction: Forward Position #: 13 Overlap #: 14 Alignment: RGRGGAGGDGBVGSGGGGSGVGGCGGVG ------------BBVGCCBVGGCCTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 24 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 Motif 7 Reverse Complement Reverse Complement GGGGGYGGGG MSGGGGCGGGGYSG YSGGGGGGCGGGGM Direction: Backward Position #: 4 Overlap #: 10 Alignment: -GGGGGYGGGG--- MSGGGGCGGGGYSG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Original Motif Reverse Complement YSGGGGGGCGGGGM BBGGGGCGGGGCVD YSGGGGGGSGGSGGGGCVD Direction: Forward Position #: 6 Overlap #: 9 Alignment: YSGGGGGGCGGGGM----- -----BBGGGGCGGGGCVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Reverse Complement YSGGGGGGSGGSGGGGCVD BBGGGGCGGGGCGGB YSGGGGGGSGGGGCGGSGCGGB Direction: Forward Position #: 8 Overlap #: 12 Alignment: YSGGGGGGSGGSGGGGCVD--- -------BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Original Motif YSGGGGGGSGGGGCGGSGCGGB GGMGGRGGCGGVGC YSGGGGGGSGGVGSGGGSGGVGC Direction: Forward Position #: 10 Overlap #: 13 Alignment: YSGGGGGGSGGGGCGGSGCGGB- ---------GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif GCVCCSCCCSCVCCSCCCCCCSK CYYCBBCYYYTCCHCCTYYY GCVCCSCCCCCBCCBCYYCBCCBCCTYYY Direction: Forward Position #: 10 Overlap #: 14 Alignment: GCVCCSCCCSCVCCSCCCCCCSK------ ---------CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 25 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFAP2A Zfx Reverse Complement Original Motif SCMVBBGGC BBVGCCBVGGCCTV TVSCCBVGGSCBBV Direction: Backward Position #: 3 Overlap #: 9 Alignment: ---SCMVBBGGC-- BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Reverse Complement Reverse Complement VBBGSCCVBGGSVA CCCCCTTGGGCCCC CCCCCBHVGSCCCCGGSVA Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----VBBGSCCVBGGSVA CCCCCTTGGGCCCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Original Motif TVSCCGGGGSCVHBGGGGG GGMGGRGGCGGVGC TVSCCGGGGSSSVGGSGGGGC Direction: Forward Position #: 8 Overlap #: 12 Alignment: TVSCCGGGGSCVHBGGGGG-- -------GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Original Motif TVSCCGGGGSSSVGGSGGGGC HSCACGTGGC TSCMCGBGGCSSVGGSGGGGC Direction: Forward Position #: 1 Overlap #: 10 Alignment: TVSCCGGGGSSSVGGSGGGGC HSCACGTGGC----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW3 Combined Motif Original Motif Reverse Complement TSCMCGBGGCSSVGGSGGGGC CGCGBMGCCG TSCMCGBGSSCGBVGSSGGGC Direction: Forward Position #: 9 Overlap #: 10 Alignment: TSCMCGBGGCSSVGGSGGGGC --------CGCGBMGCCG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 26 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF GABPA Reverse Complement Original Motif GCGGACGTTV CCGGAAGTGVV SCGGAMGTDVV Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCGGACGTTV- CCGGAAGTGVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Reverse Complement Original Motif VVDACYTCCGS BCACCTGCABC BVAMCTKCMGS Direction: Forward Position #: 1 Overlap #: 11 Alignment: VVDACYTCCGS BCACCTGCABC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Original Motif Original Motif BVAMCTKCMGS DHACATTCTGH DHACMTTCTGH Direction: Forward Position #: 1 Overlap #: 11 Alignment: BVAMCTKCMGS DHACATTCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Reverse Complement DHACMTTCTGH SGGTCACGTGACCS SGGTCACGTVACCTTCTGH Direction: Forward Position #: 9 Overlap #: 6 Alignment: --------DHACMTTCTGH SGGTCACGTGACCS----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Original Motif Original Motif SGGTCACGTVACCTTCTGH GGMGGRGGCGGVGC GGVGGDSRCGKVRCCTTCTGH Direction: Forward Position #: 3 Overlap #: 12 Alignment: --SGGTCACGTVACCTTCTGH GGMGGRGGCGGVGC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 27 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Klf4 Motif 7 Reverse Complement Original Motif GCCYCMCCCD CSKCCCCGCCCCSY CSGCCCCVCCCHSY Direction: Forward Position #: 3 Overlap #: 10 Alignment: --GCCYCMCCCD-- CSKCCCCGCCCCSY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Reverse Complement Reverse Complement MSDGGGVGGGGCSG BBGGGGCGGGGCVD MSDGGGVGGGGCGGGGCVD Direction: Forward Position #: 6 Overlap #: 9 Alignment: MSDGGGVGGGGCSG----- -----BBGGGGCGGGGCVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Reverse Complement MSDGGGVGGGGCGGGGCVD BBGGGGCGGGGCGGB MSDGGGVGGGGSGSGGSGCGGB Direction: Forward Position #: 8 Overlap #: 12 Alignment: MSDGGGVGGGGCGGGGCVD--- -------BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Original Motif MSDGGGVGGGGSGSGGSGCGGB GGMGGRGGCGGVGC MSDGGGVGGGGVGGGGGSGGVGC Direction: Forward Position #: 10 Overlap #: 13 Alignment: MSDGGGVGGGGSGSGGSGCGGB- ---------GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif GCVCCSCCCCCVCCCCVCCCHSY CYYCBBCYYYTCCHCCTYYY GCVCCSCCCCCBCCBCBCCYCCYCCTYYY Direction: Forward Position #: 10 Overlap #: 14 Alignment: GCVCCSCCCCCVCCCCVCCCHSY------ ---------CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 28 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- E2F1 PLAG1 Reverse Complement Original Motif GCGCSAAA GGGGCCCAAGGGGG GGSGCCAAAGGGGG Direction: Forward Position #: 2 Overlap #: 8 Alignment: -GCGCSAAA----- GGGGCCCAAGGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kCAGCCAATmr Combined Motif Reverse Complement Original Motif CCCCCTTTGGCSCC DCAGCCAATVR CCCCCTTTGSMGCCAATVR Direction: Forward Position #: 9 Overlap #: 6 Alignment: CCCCCTTTGGCSCC----- --------DCAGCCAATVR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Original Motif MBATTGGCYSCAAAGGGGG GGMGGRGGCGGVGC MBATTGGSHSSVRRSGGGGC Direction: Forward Position #: 7 Overlap #: 13 Alignment: MBATTGGCYSCAAAGGGGG- ------GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Reverse Complement Reverse Complement GCCCCSMMBSSDSCCAATBR YCGCCCACGCH BCBCCCACKCVDSCCAATBR Direction: Forward Position #: 1 Overlap #: 11 Alignment: GCCCCSMMBSSDSCCAATBR YCGCCCACGCH--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Reverse Complement Original Motif MBATTGGSHVGYGTGGGBGB CGGVGCCGCVGC MBATTGGSHGGHGYSGSVGC Direction: Forward Position #: 9 Overlap #: 12 Alignment: MBATTGGSHVGYGTGGGBGB --------CGGVGCCGCVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 29 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HIF1AARNT Mycn Original Motif Reverse Complement VBACGTGV GCCACGTGSD DSCACGTGSG Direction: Backward Position #: 2 Overlap #: 8 Alignment: -VBACGTGV- GCCACGTGSD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Reverse Complement Original Motif CSCACGTGSH VGCACGTGGH CSCACGTGGH Direction: Forward Position #: 1 Overlap #: 10 Alignment: CSCACGTGSH VGCACGTGGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Original Motif Reverse Complement CSCACGTGGH GBTGCAGGTGB GBTGCASGTGBH Direction: Forward Position #: 3 Overlap #: 9 Alignment: --CSCACGTGGH GBTGCAGGTGB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Reverse Complement GBTGCASGTGBH SGGTCACGTGACCS SSKKCACGTGDCCS Direction: Forward Position #: 1 Overlap #: 12 Alignment: GBTGCASGTGBH-- SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF Combined Motif Original Motif Reverse Complement SSKKCACGTGDCCS GCGGACGTTV SGCGSACGTDVCCS Direction: Forward Position #: 2 Overlap #: 10 Alignment: SSKKCACGTGDCCS -GCGGACGTTV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 30 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 TFM12 Reverse Complement Original Motif CCCCCTTGGGCCCC CYYCBBCYYYTCCHCCTYYY CTYYYCCCCCYTBSKCCCCC Direction: Backward Position #: 6 Overlap #: 14 Alignment: -CCCCCTTGGGCCCC----- CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Reverse Complement CTYYYCCCCCYTBSKCCCCC CHCCBCCKMCTCCKCM CTYYYCCCCHCHBSCYCCYCCKCM Direction: Forward Position #: 9 Overlap #: 12 Alignment: CTYYYCCCCCYTBSKCCCCC---- --------CHCCBCCKMCTCCKCM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Original Motif RGRGGMGGKGSVDGDGGGGKKKAG BBVGCCBVGGCCTV RGRGGMGGKGSVDGSSGVGGSCTG Direction: Forward Position #: 11 Overlap #: 14 Alignment: RGRGGMGGKGSVDGDGGGGKKKAG ----------BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Original Motif CAGSCCVCSSCHVSCYCCYCCKCM BCCGCCCCGCCCCBB CAGSCCVCSSCHVGCCCCGCCYCVB Direction: Forward Position #: 11 Overlap #: 14 Alignment: CAGSCCVCSSCHVSCYCCYCCKCM- ----------BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif BVGKGGCGGGGCVDGSSGVGGSCTG DGVBCABTGDWGCGKRRCSR BVGKGGCGGGGVVBBVBKGRDGCDKRRCSR Direction: Forward Position #: 11 Overlap #: 15 Alignment: BVGKGGCGGGGCVDGSSGVGGSCTG----- ----------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 31 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 TFM12 Original Motif Reverse Complement DGVBCABTGDWGCGKRRCSR KKKAGGDGGAKKMGBBGKMG DGBDBVBKGADGMGKVRSVG Direction: Forward Position #: 1 Overlap #: 20 Alignment: DGVBCABTGDWGCGKRRCSR KKKAGGDGGAKKMGBBGKMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Reverse Complement Reverse Complement CVSMVRCRCDTCRBVBDBCH TWVHWWWYTTTYTTTTTHTTTVWBH CVSMVRCRYDBHDDHBDTYYTTTTTHTTTVWBH Direction: Forward Position #: 9 Overlap #: 12 Alignment: CVSMVRCRCDTCRBVBDBCH------------- --------TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif CVSMVRCRYDBHDDHBDTYYTTTTTHTTTVWBH WWHTTTTTCABAAWTTWA CVSMVRCRYDBHDDWHHTTTTTYWTAWTTHWHH Direction: Forward Position #: 15 Overlap #: 18 Alignment: CVSMVRCRYDBHDDHBDTYYTTTTTHTTTVWBH --------------WWHTTTTTCABAAWTTWA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Original Motif HHWHAAWTAWKAAAAAHHWDDDVDKMGKVRSVG RGRGGAGRRGGHGGDG HHWHAAWTAWKAAARRARDADRRGGHGGDGSVG Direction: Forward Position #: 15 Overlap #: 16 Alignment: HHWHAAWTAWKAAAAAHHWDDDVDKMGKVRSVG --------------RGRGGAGRRGGHGGDG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Original Motif CVSCHCCDCCKMHTHMTKKTTTYWTAWTTHWHH WTKTTTTTHWTTTTTTBT CVSCHCCDCCKMHTHHKTTTTTHWTWWTTTHWH Direction: Forward Position #: 15 Overlap #: 18 Alignment: CVSCHCCDCCKMHTHMTKKTTTYWTAWTTHWHH --------------WTKTTTTTHWTTTTTTBT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 32 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ArntAhr Egr1 Original Motif Original Motif YGCGTG HGCGTGGGCGK YGCGTGGGCGK Direction: Forward Position #: 1 Overlap #: 6 Alignment: YGCGTG----- HGCGTGGGCGK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HIF1AARNT Original Motif Original Motif YGCGTGGGCGK VBACGTGV VBRCGTGGGCGK Direction: Forward Position #: 2 Overlap #: 7 Alignment: -YGCGTGGGCGK VBACGTGV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Reverse Complement VBRCGTGGGCGK GCCACGTGSD GSCACGTGSGCGK Direction: Forward Position #: 2 Overlap #: 9 Alignment: -VBRCGTGGGCGK GCCACGTGSD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Original Motif Reverse Complement GSCACGTGSGCGK BBGGGGCGGGGCVD BBGGSGCGKGGSVGK Direction: Forward Position #: 3 Overlap #: 12 Alignment: --GSCACGTGSGCGK BBGGGGCGGGGCVD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Original Motif Original Motif BBGGSGCGKGGSVGK VGCACGTGGH VGCACGBGGCGKGGSVGK Direction: Forward Position #: 4 Overlap #: 7 Alignment: ---BBGGSGCGKGGSVGK VGCACGTGGH-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 33 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mycn Myc Original Motif Original Motif HSCACGTGGC VGCACGTGGH VSCACGTGGC Direction: Backward Position #: 1 Overlap #: 10 Alignment: HSCACGTGGC VGCACGTGGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Reverse Complement Original Motif GCCACGTGSV SGGTCACGTGACCS SGGYCACGTGMVCS Direction: Forward Position #: 3 Overlap #: 10 Alignment: --GCCACGTGSV-- SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GABPA Combined Motif Reverse Complement Original Motif SGVYCACGTGMCCS CCGGAAGTGVV SSCGSAMGTGVCCS Direction: Forward Position #: 2 Overlap #: 11 Alignment: SGVYCACGTGMCCS -CCGGAAGTGVV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Reverse Complement Reverse Complement SGGBCACYTSCGSS GCCYCMCCCD GSSYCMCCYVCGSS Direction: Forward Position #: 1 Overlap #: 10 Alignment: SGGBCACYTSCGSS GCCYCMCCCD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Original Motif SSCGVMGGYGMSSC GGMGGRGGCGGVGC SSCGVVGGBGVGGCGGVGC Direction: Forward Position #: 6 Overlap #: 9 Alignment: SSCGVMGGYGMSSC----- -----GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 34 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Mycn Reverse Complement Reverse Complement DCCACGTGCV GCCACGTGSD GCCACGTGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: DCCACGTGCV GCCACGTGSD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Original Motif GCCACGTGSV SGGTCACGTGACCS SGGYCACGTGMVCS Direction: Forward Position #: 3 Overlap #: 10 Alignment: --GCCACGTGSV-- SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GABPA Combined Motif Reverse Complement Original Motif SGVYCACGTGMCCS CCGGAAGTGVV SSCGSAMGTGVCCS Direction: Forward Position #: 2 Overlap #: 11 Alignment: SGVYCACGTGMCCS -CCGGAAGTGVV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Reverse Complement Reverse Complement SGGBCACYTSCGSS GCVCCGCCMCCYCC GCVCCGSCCMCYYCCGSS Direction: Forward Position #: 5 Overlap #: 10 Alignment: ----SGGBCACYTSCGSS GCVCCGCCMCCYCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Klf4 Combined Motif Original Motif Reverse Complement GCVCCGSCCMCYYCCGSS GCCYCMCCCD GCVCCGSBCCCCHCCCVS Direction: Forward Position #: 8 Overlap #: 10 Alignment: GCVCCGSCCMCYYCCGSS -------GCCYCMCCCD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 35 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GABPA TFM12 Reverse Complement Original Motif VVCACTTCCGG CYYCBBCYYYTCCHCCTYYY CYYCVBCHCTTCCGSCTYYY Direction: Forward Position #: 5 Overlap #: 11 Alignment: ----VVCACTTCCGG----- CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Reverse Complement CYYCVBCHCTTCCGSCTYYY CHCCBCCKMCTCCKCM CYYCVBCHCYYCCSCBHCTCCKCM Direction: Forward Position #: 9 Overlap #: 12 Alignment: CYYCVBCHCTTCCGSCTYYY---- --------CHCCBCCKMCTCCKCM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Reverse Complement Reverse Complement RGRGGAGDVGSGGKMGHGBVGKMG MSGKKRCGCWDCABTGBBCD MSGDGRSGCDDVVSDGBHSHGBVGKMG Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---RGRGGAGDVGSGGKMGHGBVGKMG MSGKKRCGCWDCABTGBBCD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif MSGDGRSGCDDVVSDGBHSHGBVGKMG BBVGCCBVGGCCTV MSGDGRSGCDDVVVDSYBVGGCCKBMG Direction: Forward Position #: 12 Overlap #: 14 Alignment: MSGDGRSGCDDVVSDGBHSHGBVGKMG -----------BBVGCCBVGGCCTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc Combined Motif Original Motif Reverse Complement MSGDGRSGCDDVVVDSYBVGGCCKBMG GBTGCAGGTGB MSGDGRSGCDDVVVDSYBVGGCYGCAGGTGB Direction: Forward Position #: 21 Overlap #: 7 Alignment: MSGDGRSGCDDVVVDSYBVGGCCKBMG---- --------------------GBTGCAGGTGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 36 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc cccGCCCCGCCCCsb Reverse Complement Reverse Complement BBGGGGCGGGGCVD BBGGGGCGGGGCGGB BBGGGGCGGGGCGGB Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBGGGGCGGGGCVD- BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Reverse Complement BBGGGGCGGGGCGGB MSGGGGCGGGGYSG BBGGGGCGGGGCGGGGYSG Direction: Forward Position #: 6 Overlap #: 10 Alignment: BBGGGGCGGGGCGGB---- -----MSGGGGCGGGGYSG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Reverse Complement BBGGGGCGGGGCGGGGYSG MSGKKRCGCWDCABTGBBCD BBGGGVSGGGGCGSDGCVBTGBBCD Direction: Forward Position #: 6 Overlap #: 14 Alignment: BBGGGGCGGGGCGGGGYSG------ -----MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif HGVBCABBGCHSCGCCCCSVCCCBB CYYCBBCYYYTCCHCCTYYY HGVBCABBGCCBCSVYCCBBCCCBBCTYYY Direction: Forward Position #: 11 Overlap #: 15 Alignment: HGVBCABBGCHSCGCCCCSVCCCBB----- ----------CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Reverse Complement HGVBCABBGCCBCSVYCCBBCCCBBCTYYY CHCCBCCKMCTCCKCM HGVBCABBGCCBCCHCCHSCBCCTCCTCCY Direction: Forward Position #: 14 Overlap #: 16 Alignment: HGVBCABBGCCBCSVYCCBBCCCBBCTYYY -------------CHCCBCCKMCTCCKCM- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 37 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw wwAAATAATAtw Original Motif Original Motif HDAAATAATAHW HDAAATAATADD HDAAATAATAHW Direction: Forward Position #: 1 Overlap #: 12 Alignment: HDAAATAATAHW HDAAATAATADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 3 Original Motif Original Motif HDAAATAATAHW AWAAAWTWAAASWA AWAAAWHAAAWAWWAHW Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----HDAAATAATAHW AWAAAWTWAAASWA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Original Motif Original Motif AWAAAWHAAAWAWWAHW HDWVAAAHAAAAAMAAAMWWWHBWA HDWVAAAAWAAAAHAAAAAWWABWA Direction: Forward Position #: 8 Overlap #: 17 Alignment: -------AWAAAWHAAAWAWWAHW- HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Reverse Complement HDWVAAAAWAAAAHAAAAAWWABWA ABAAAAAAWHAAAAARAW HDWVAAAAWAADAAAAAAADAAAAARAW Direction: Forward Position #: 11 Overlap #: 15 Alignment: HDWVAAAAWAAAAHAAAAAWWABWA--- ----------ABAAAAAAWHAAAAARAW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Original Motif Original Motif HDWVAAAAWAADAAAAAAADAAAAARAW AATHATATWTHAAA HDWVAAAAWAADAAWWAWAWWWHAAAAW Direction: Forward Position #: 13 Overlap #: 14 Alignment: HDWVAAAAWAADAAAAAAADAAAAARAW ------------AATHATATWTHAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 38 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb TFM12 Original Motif Original Motif BCCGCCCCGCCCCBB CYYCBBCYYYTCCHCCTYYY CYBCVGCCCCGCCCCBBYYY Direction: Forward Position #: 3 Overlap #: 15 Alignment: --BCCGCCCCGCCCCBB--- CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Reverse Complement CYBCVGCCCCGCCCCBBYYY CHCCBCCKMCTCCKCM CYBCVGCCCCVCCCCBHCTCCKCM Direction: Forward Position #: 9 Overlap #: 12 Alignment: CYBCVGCCCCGCCCCBBYYY---- --------CHCCBCCKMCTCCKCM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Reverse Complement RGRGGAGDVGGGGVGGGGCVGBMG MSGKKRCGCWDCABTGBBCD RGRGGAGDVGVVGBKRVGCDKSMGTGBBCD Direction: Forward Position #: 11 Overlap #: 14 Alignment: RGRGGAGDVGGGGVGGGGCVGBMG------ ----------MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Reverse Complement Original Motif HGVBCACYSYDGCVMYBCVVCBHCTCCKCM HVGCCCCGCCCCBB HGVBCACYSHVGCCCCGCCCCBHCTCCKCM Direction: Forward Position #: 10 Overlap #: 14 Alignment: HGVBCACYSYDGCVMYBCVVCBHCTCCKCM ---------HVGCCCCGCCCCBB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Reverse Complement RGRGGAGDBGGGGCGGGGCVDSMGTGBBCD MSGGGGCGGGGYSG RGRGGAGDBGVGGSGGSGSGGCVGTGBBCD Direction: Forward Position #: 11 Overlap #: 14 Alignment: RGRGGAGDBGGGGCGGGGCVDSMGTGBBCD ----------MSGGGGCGGGGYSG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 39 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kCAGCCAATmr tkAAATAATAtw Reverse Complement Reverse Complement MBATTGGCTGH WHTATTATTTDH WVTATTRKYTVH Direction: Forward Position #: 2 Overlap #: 11 Alignment: -MBATTGGCTGH WHTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Reverse Complement Reverse Complement HVAKYMAATABW HCAGAATGTHD HCAGAAWRTMDW Direction: Forward Position #: 1 Overlap #: 11 Alignment: HVAKYMAATABW HCAGAATGTHD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Original Motif Reverse Complement HCAGAAWRTMDW DDTATTATTTDH HCAGHATATWATTTDH Direction: Forward Position #: 5 Overlap #: 8 Alignment: HCAGAAWRTMDW---- ----DDTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc Combined Motif Reverse Complement Reverse Complement HDAAATWATATHCTGH GBTGCAGGTGB HDAAATWATATDCTGCAGGTGB Direction: Forward Position #: 12 Overlap #: 5 Alignment: HDAAATWATATHCTGH------ -----------GBTGCAGGTGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Original Motif HDAAATWATATDCTGCAGGTGB GGMGGRGGCGGVGC HDAAATWATATDCTGSAGGTGGCGGVGC Direction: Forward Position #: 15 Overlap #: 8 Alignment: HDAAATWATATDCTGCAGGTGB------ --------------GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 40 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc wsTACwGTAsw Original Motif Reverse Complement BCACCTGCABC DBTACWGTAVH DBWMCTGYAVH Direction: Backward Position #: 1 Overlap #: 11 Alignment: BCACCTGCABC DBTACWGTAVH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Reverse Complement Original Motif DVTKCAGYWBD DHACATTCTGH DHACATTCWGYWBD Direction: Forward Position #: 4 Overlap #: 8 Alignment: ---DVTKCAGYWBD DHACATTCTGH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 41 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw tkAAATAATAtw Original Motif Original Motif HDAAATAATADD HDAAATAATAHW HDAAATAATAHW Direction: Forward Position #: 1 Overlap #: 12 Alignment: HDAAATAATADD HDAAATAATAHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 3 Original Motif Original Motif HDAAATAATAHW AWAAAWTWAAASWA AWAAAWHAAAWAWWAHW Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----HDAAATAATAHW AWAAAWTWAAASWA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM1 Original Motif Reverse Complement AWAAAWHAAAWAWWAHW ABAAAAAAWHAAAAARAW ABAAAAAAWAAAAAAAAWAWWAHW Direction: Forward Position #: 8 Overlap #: 11 Alignment: -------AWAAAWHAAAWAWWAHW ABAAAAAAWHAAAAARAW------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Original Motif Original Motif ABAAAAAAWAAAAAAAAWAWWAHW HDWVAAAHAAAAAMAAAMWWWHBWA HDWVAAAHAAADAAAAAAWWAADWAAAWAWWAHW Direction: Forward Position #: 11 Overlap #: 15 Alignment: ----------ABAAAAAAWAAAAAAAAWAWWAHW HDWVAAAHAAAAAMAAAMWWWHBWA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Original Motif Original Motif HDWVAAAHAAADAAAAAAWWAADWAAAWAWWAHW AATHATATWTHAAA HDWVAAAHAAADAAAAADWAWAWWWVAAAWWAHW Direction: Forward Position #: 16 Overlap #: 14 Alignment: HDWVAAAHAAADAAAAAAWWAADWAAAWAWWAHW ---------------AATHATATWTHAAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 42 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sSGTCACGTGACSs Pax5 Original Motif Original Motif SGGTCACGTGACCS DGVBCABTGDWGCGKRRCSR DGVBCABBGWHRCGTGACSV Direction: Forward Position #: 7 Overlap #: 14 Alignment: ------SGGTCACGTGACCS DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Reverse Complement Reverse Complement VSGTCACGKDWCBBTGBBCD BBGGGGCGGGGCVD VSGKSRCGGGGCBBTGBBCD Direction: Forward Position #: 1 Overlap #: 14 Alignment: VSGTCACGKDWCBBTGBBCD BBGGGGCGGGGCVD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Original Motif HGVBCABBGCCCCGMSYCSV BCCGCCCCGCCCCBB HGVBCABBGCCSCSCCSCCCCBB Direction: Forward Position #: 9 Overlap #: 12 Alignment: HGVBCABBGCCCCGMSYCSV--- --------BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Original Motif HGVBCABBGCCSCSCCSCCCCBB CSKCCCCGCCCCSY HGVBCABBGCCKCCCCGCCCCSB Direction: Forward Position #: 10 Overlap #: 14 Alignment: HGVBCABBGCCSCSCCSCCCCBB ---------CSKCCCCGCCCCSY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Reverse Complement HGVBCABBGCCKCCCCGCCCCSB GCVCCGCCMCCYCC HGVBCABBGSCBCCSCSCCCCCC Direction: Forward Position #: 10 Overlap #: 14 Alignment: HGVBCABBGCCKCCCCGCCCCSB ---------GCVCCGCCMCCYCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 43 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wsTACwGTAsw kcACCTGCAgc Original Motif Reverse Complement HVTACWGTABD GBTGCAGGTGB DVTRCAGKWBH Direction: Forward Position #: 1 Overlap #: 11 Alignment: HVTACWGTABD GBTGCAGGTGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Original Motif Reverse Complement DVTRCAGKWBH DDTATTATTTDH DVTAYWRTWDDH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DVTRCAGKWBH- DDTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Original Motif Original Motif DVTAYWRTWDDH HDAAATAATAHW DVTAYWAWWTAATAHW Direction: Forward Position #: 5 Overlap #: 8 Alignment: DVTAYWRTWDDH---- ----HDAAATAATAHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Reverse Complement Original Motif WHTATTAWWTWMTAVD AATTYDGAARTAWW WHTATTAATTHHKAADTAWW Direction: Forward Position #: 7 Overlap #: 10 Alignment: WHTATTAWWTWMTAVD---- ------AATTYDGAARTAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww Combined Motif Reverse Complement Reverse Complement WWTABTTYHHAATTAATAHW DHTATTTACBD WWTABTTYHHWATTWAYAHW Direction: Forward Position #: 9 Overlap #: 11 Alignment: WWTABTTYHHAATTAATAHW --------DHTATTTACBD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 44 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dhACATTCTkh TFM3 Original Motif Reverse Complement DHACATTCTGH TWAAWTTVTGAAAAAHWW AAAAHWWTWAMATTCTGW Direction: Backward Position #: 8 Overlap #: 11 Alignment: DHACATTCTGH------- TWAAWTTVTGAAAAAHWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc Combined Motif Original Motif Original Motif AAAAHWWTWAMATTCTGW BCACCTGCABC AAAAHWWBHACMTKCWGH Direction: Forward Position #: 8 Overlap #: 11 Alignment: AAAAHWWTWAMATTCTGW -------BCACCTGCABC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Reverse Complement Reverse Complement DCWGYARGTDVWWHTTTT TCAAAATKAWTTGT ARGTDVWWHTTTTWYTGTDCWGYARGTDVWW Direction: Backward Position #: 14 Overlap #: 5 Alignment: ---------DCWGYARGTDVWWHTTTT -------------TCAAAATKAWTTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 45 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww tkAAATAATAtw Original Motif Original Motif DBGTAAATAHD HDAAATAATAHW DHRWWAATAHDH Direction: Backward Position #: 1 Overlap #: 11 Alignment: -DBGTAAATAHD HDAAATAATAHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Original Motif Original Motif DHRWWAATAHDH HDAAATAATADD DHRWWAAWATAWTADD Direction: Forward Position #: 5 Overlap #: 8 Alignment: DHRWWAATAHDH---- ----HDAAATAATADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Original Motif Original Motif DHRWWAAWATAWTADD HDWVAAAHAAAAAMAAAMWWWHBWA HDWVAAWHAWWAAHAWAATADHBWA Direction: Forward Position #: 7 Overlap #: 16 Alignment: ------DHRWWAAWATAWTADD--- HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Reverse Complement TWVHDTATTWTHTTWWTHWTTVWBH TTTDAWATATHATT TWVHDTATTWTTTDAWWTWTTRWTH Direction: Forward Position #: 11 Overlap #: 14 Alignment: TWVHDTATTWTHTTWWTHWTTVWBH ----------TTTDAWATATHATT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Original Motif Reverse Complement TWVHDTATTWTTTDAWWTWTTRWTH WWTAKTTCDKAATT TWVHDTATTWTTTHDTTYWTWATTH Direction: Forward Position #: 11 Overlap #: 14 Alignment: TWVHDTATTWTTTDAWWTWTTRWTH ----------WWTAKTTCDKAATT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 46 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW1 TFW3 Original Motif Original Motif GTCGCG CGGCYBCGCG GBCGCGCGGC Direction: Backward Position #: 1 Overlap #: 6 Alignment: ----GTCGCG CGGCYBCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Reverse Complement GBCGCGCGGC SGGTCACGTGACCS SGGTCRCGYGRCCS Direction: Forward Position #: 3 Overlap #: 10 Alignment: --GBCGCGCGGC-- SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Original Motif Original Motif SGGTCRCGYGRCCS GGMGGRGGCGGVGC GGVBSRSGCGGCSS Direction: Forward Position #: 1 Overlap #: 14 Alignment: SGGTCRCGYGRCCS GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Original Motif Original Motif GGVBSRSGCGGCSS CGGVGCCGCVGC GGVBSVGGHGSCGCVGC Direction: Forward Position #: 6 Overlap #: 9 Alignment: GGVBSRSGCGGCSS--- -----CGGVGCCGCVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW2 Combined Motif Reverse Complement Reverse Complement GCVGCGSCDCCBSBVCC CCGCGCGS GCVGCGSCGCSCGBVCC Direction: Forward Position #: 7 Overlap #: 8 Alignment: GCVGCGSCDCCBSBVCC ------CCGCGCGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 47 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW2 csGCCCCGCCCCsc Reverse Complement Original Motif CCGCGCGS HVGCCCCGCCCCBB HCSSCSCGCCCCBB Direction: Forward Position #: 2 Overlap #: 8 Alignment: -CCGCGCGS----- HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Reverse Complement Reverse Complement BBGGGGCGSGSSGD BBGGGGCGGGGCGGB BBGGGGCGGGGCGSGSSGD Direction: Forward Position #: 6 Overlap #: 10 Alignment: -----BBGGGGCGSGSSGD BBGGGGCGGGGCGGB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Original Motif HCSSCSCGCCCCGCCCCBB CSKCCCCGCCCCSY HCSSCSCSCSCCSCSCCCCSY Direction: Forward Position #: 8 Overlap #: 12 Alignment: HCSSCSCGCCCCGCCCCBB-- -------CSKCCCCGCCCCSY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mycn Combined Motif Reverse Complement Reverse Complement MSGGGGSGSGGSGSGSGSSGD GCCACGTGSD MSGGGGSGSSRCGTGSGSSGD Direction: Forward Position #: 8 Overlap #: 10 Alignment: MSGGGGSGSGGSGSGSGSSGD -------GCCACGTGSD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Original Motif Original Motif MSGGGGSGSSRCGTGSGSSGD VGCACGTGGH VGCACGKGGBGSSRCGTGSGSSGD Direction: Forward Position #: 4 Overlap #: 7 Alignment: ---MSGGGGSGSSRCGTGSGSSGD VGCACGTGGH-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 48 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW3 TFF1 Original Motif Original Motif CGGCYBCGCG CGGVGCCGCVGC GCCGGCKCCGCG Direction: Backward Position #: 3 Overlap #: 10 Alignment: CGGCYBCGCG-- CGGVGCCGCVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Reverse Complement Original Motif CGCGGYGCCGGC HGCGTGGGCGK HGCGKSGSCGGC Direction: Forward Position #: 1 Overlap #: 11 Alignment: CGCGGYGCCGGC HGCGTGGGCGK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Reverse Complement Reverse Complement GCCGSCSRCGCD GCVCCGCCMCCYCC GCVCCGCCVCCBVCGCD Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----GCCGSCSRCGCD GCVCCGCCMCCYCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Original Motif GCVCCGCCVCCBVCGCD DGVBCABTGDWGCGKRRCSR DGVBCABTGMHSCGBMRCCVVCGCD Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------GCVCCGCCVCCBVCGCD DGVBCABTGDWGCGKRRCSR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Original Motif DGVBCABTGMHSCGBMRCCVVCGCD CSKCCCCGCCCCSY DGVBCABTGCVGCSCCGCCCCCKCD Direction: Forward Position #: 10 Overlap #: 14 Alignment: DGVBCABTGMHSCGBMRCCVVCGCD ---------CSKCCCCGCCCCSY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 49 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 TFF11 Original Motif Original Motif CGGVGCCGCVGC GGMGGRGGCGGVGC VGGVGSCGSVGCGG Direction: Backward Position #: 1 Overlap #: 12 Alignment: --CGGVGCCGCVGC GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Original Motif Reverse Complement VGGVGSCGSVGCGG BBGGGGCGGGGCVD VGGVGSCGGGGCGGGGCVD Direction: Forward Position #: 6 Overlap #: 9 Alignment: VGGVGSCGSVGCGG----- -----BBGGGGCGGGGCVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Reverse Complement Original Motif HVGCCCCGCCCCGSCBCCV CYYCBBCYYYTCCHCCTYYY CYCCGCCCCSCCCCSCYBCCV Direction: Forward Position #: 3 Overlap #: 18 Alignment: --HVGCCCCGCCCCGSCBCCV CYYCBBCYYYTCCHCCTYYY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Original Motif CYCCGCCCCSCCCCSCYBCCV BCCGCCCCGCCCCBB CYCCGCCCCBCSCCCCSCCCCBB Direction: Forward Position #: 9 Overlap #: 13 Alignment: CYCCGCCCCSCCCCSCYBCCV-- --------BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif BBGGGGSGGGGSGBGGGGCGGMG DGVBCABTGDWGCGKRRCSR BBGGGGSGGGGVGBDBKGVDGMGKRRCSR Direction: Forward Position #: 10 Overlap #: 14 Alignment: BBGGGGSGGGGSGBGGGGCGGMG------ ---------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 50 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 TFM2 Original Motif Original Motif GGMGGRGGCGGVGC RGRGGAGRRGGHGGDG GGAGGRGGVGGVGSDG Direction: Forward Position #: 1 Overlap #: 14 Alignment: GGMGGRGGCGGVGC-- RGRGGAGRRGGHGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Original Motif Reverse Complement GGAGGRGGVGGVGSDG KKKAGGDGGAKKMGBBGKMG KKKAGGDGGAGGVGGVGGHGSDG Direction: Forward Position #: 8 Overlap #: 13 Alignment: -------GGAGGRGGVGGVGSDG KKKAGGDGGAKKMGBBGKMG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Reverse Complement KKKAGGDGGAGGVGGVGGHGSDG BBGGGGCGGGGCGGB KKKAGGDGGVBGGGGCGGGGCGGB Direction: Forward Position #: 10 Overlap #: 14 Alignment: KKKAGGDGGAGGVGGVGGHGSDG- ---------BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Reverse Complement BCCGCCCCGCCCCBBCCHCCTYYY MSGKKRCGCWDCABTGBBCD BCCGCCCCGCCSSBKVCBCHTCHBTGBBCD Direction: Forward Position #: 11 Overlap #: 14 Alignment: BCCGCCCCGCCCCBBCCHCCTYYY------ ----------MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Original Motif Original Motif BCCGCCCCGCCSSBKVCBCHTCHBTGBBCD HVGCCCCGCCCCBB BCCGCCCCGCCSSBBGCCCCGCCCYBBBCD Direction: Forward Position #: 14 Overlap #: 14 Alignment: BCCGCCCCGCCSSBKVCBCHTCHBTGBBCD -------------HVGCCCCGCCCCBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 51 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 TFM12 Reverse Complement Original Motif CHCCBCCKMCTCCKCM CYYCBBCYYYTCCHCCTYYY CHCCBSCBCCTCCBCCTYYY Direction: Forward Position #: 1 Overlap #: 16 Alignment: CHCCBCCKMCTCCKCM---- CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif KKKAGGVGGAGGVGSVGGDG DGVBCABTGDWGCGKRRCSR KKKAGGVGGRVKVRSBGDDGCGKRRCSR Direction: Forward Position #: 9 Overlap #: 12 Alignment: KKKAGGVGGAGGVGSVGGDG-------- --------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Reverse Complement Reverse Complement MSGKKRCGCDHCVSMVYVKCCBCCTYYY TWVHWWWYTTTYTTTTTHTTTVWBH MSGKKRCGCDHCBDVDHHDYYTYYTBYYTHTTTVWBH Direction: Forward Position #: 13 Overlap #: 16 Alignment: MSGKKRCGCDHCVSMVYVKCCBCCTYYY--------- ------------TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Original Motif Reverse Complement MSGKKRCGCDHCBDVDHHDYYTYYTBYYTHTTTVWBH BBGGGGCGGGGCGGB HSGGGGCGSGGCBBVDHHDYYTYYTBYYTHTTTVWBH Direction: Forward Position #: 1 Overlap #: 15 Alignment: MSGKKRCGCDHCBDVDHHDYYTYYTBYYTHTTTVWBH BBGGGGCGGGGCGGB---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Combined Motif Original Motif Reverse Complement HSGGGGCGSGGCBBVDHHDYYTYYTBYYTHTTTVWBH MTMMTCMMTCTKCK HSGGGGCGSGGCBBVDHDHCYBHCTBTTHTTTTVWBH Direction: Forward Position #: 17 Overlap #: 14 Alignment: HSGGGGCGSGGCBBVDHHDYYTYYTBYYTHTTTVWBH ----------------MTMMTCMMTCTKCK------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 52 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 TFM11 Original Motif Reverse Complement WTKTTTTTHWTTTTTTBT TWVHWWWYTTTYTTTTTHTTTVWBH TWVHWWWBTTTTTDTTTDTTTBWBH Direction: Forward Position #: 6 Overlap #: 18 Alignment: -----WTKTTTTTHWTTTTTTBT-- TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif TWVHWWWBTTTTTDTTTDTTTBWBH ATKAAWTTTTRMAABAHHTW TWVHWWWBTTWTTWWWTTTTDHWHHAHHTW Direction: Forward Position #: 11 Overlap #: 15 Alignment: TWVHWWWBTTTTTDTTTDTTTBWBH----- ----------ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif TWVHWWWBTTWTTWWWTTTTDHWHHAHHTW WWHTTTTTCABAAWTTWA TWVHWWWBTTWTTWWWTTTTTCAHAAHHTWA Direction: Forward Position #: 14 Overlap #: 17 Alignment: TWVHWWWBTTWTTWWWTTTTDHWHHAHHTW- -------------WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Original Motif Original Motif TWVHWWWBTTWTTWWWTTTTTCAHAAHHTWA CYYCBBCYYYTCCHCCTYYY CYYCBDCHYHTYYTHYTHHYTTTTTCAHAAHHTWA Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----TWVHWWWBTTWTTWWWTTTTTCAHAAHHTWA CYYCBBCYYYTCCHCCTYYY--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif TWAHHTTDTGAAAAAMHHAMHAMKAHMHGDVGKMG DGVBCABTGDWGCGKRRCSR TWAHHTTDTGAAAAAHVHDMHVHGADGHGDRRSVG Direction: Forward Position #: 16 Overlap #: 20 Alignment: TWAHHTTDTGAAAAAMHHAMHAMKAHMHGDVGKMG ---------------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 53 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 TFM13 Reverse Complement Original Motif TWAAWTTVTGAAAAAHWW ATKAAWTTTTRMAABAHHTW ATWAAWTTHTGAAAWAHWWW Direction: Forward Position #: 2 Overlap #: 18 Alignment: -TWAAWTTVTGAAAAAHWW- ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Reverse Complement Reverse Complement WWWHTWTTTCAHAAWTTWAT TWVHWWWYTTTYTTTTTHTTTVWBH TWVHWWWYTWTHTDTTTHWTWVWTWWAT Direction: Forward Position #: 9 Overlap #: 17 Alignment: --------WWWHTWTTTCAHAAWTTWAT TWVHWWWYTTTYTTTTTHTTTVWBH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Reverse Complement ATWWAWBWAWDAAADAHAWAMWWWHBWA ABAAAAAAWHAAAAARAW ATWWAWBWAWDAADAAAAAAAHAAAHWRAW Direction: Forward Position #: 13 Overlap #: 16 Alignment: ATWWAWBWAWDAAADAHAWAMWWWHBWA-- ------------ABAAAAAAWHAAAAARAW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif ATWWAWBWAWDAADAAAAAAAHAAAHWRAW DGVBCABTGDWGCGKRRCSR ATWWAWBWAWDAADRADHAHHDAARMRDADCSR Direction: Forward Position #: 14 Overlap #: 17 Alignment: ATWWAWBWAWDAADAAAAAAAHAAAHWRAW--- -------------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Reverse Complement MSGDTDKRMTTHHHTHDTKDTTHWTWVWTWWAT TWSTTTWAWTTTWT MSGDTDKRMTTHHHTHVTTTTWHTTTATTWWAT Direction: Forward Position #: 15 Overlap #: 14 Alignment: MSGDTDKRMTTHHHTHDTKDTTHWTWVWTWWAT --------------TWSTTTWAWTTTWT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 54 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Pax5 Original Motif Reverse Complement CYYCBBCYYYTCCHCCTYYY MSGKKRCGCWDCABTGBBCD CBSBBVCBCHTCMBYBBBCB Direction: Forward Position #: 1 Overlap #: 20 Alignment: CYYCBBCYYYTCCHCCTYYY MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Reverse Complement Original Motif VGBVBKBRGAHGBGVBBSBG HDWVAAAHAAAAAMAAAMWWWHBWA HDWVAAAHAARDAVAADVHDDHGHVBSBG Direction: Forward Position #: 10 Overlap #: 16 Alignment: ---------VGBVBKBRGAHGBGVBBSBG HDWVAAAHAAAAAMAAAMWWWHBWA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Original Motif CBSBBHCHHDHVDTTVTDKTTHTTTVWBH WTKTTTTTHWTTTTTTBT CBSBBHCHHDHVWTDDTTKTWHTTTTTTHT Direction: Forward Position #: 13 Overlap #: 17 Alignment: CBSBBHCHHDHVDTTVTDKTTHTTTVWBH- ------------WTKTTTTTHWTTTTTTBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Original Motif AHAAAAAAHWARAADDAWVHDDHGHVBSBG RGRGGAGRRGGHGGDG AHAAAAAAHWARARRRRRRVRRGGHRGBGG Direction: Forward Position #: 14 Overlap #: 16 Alignment: AHAAAAAAHWARAADDAWVHDDHGHVBSBG -------------RGRGGAGRRGGHGGDG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Reverse Complement AHAAAAAAHWARARRRRRRVRRGGHRGBGG BBGGGGCGGGGCGGB AHAAAAAAHWARAVVRGGGCGGGGCGGBGG Direction: Forward Position #: 14 Overlap #: 15 Alignment: AHAAAAAAHWARARRRRRRVRRGGHRGBGG -------------BBGGGGCGGGGCGGB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 55 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 TFM11 Reverse Complement Reverse Complement WAHHTVTTYKAAAAWTTRAT TWVHWWWYTTTYTTTTTHTTTVWBH TWVHWAHYTDTTTKWWWWTTTDWTH Direction: Forward Position #: 5 Overlap #: 20 Alignment: ----WAHHTVTTYKAAAAWTTRAT- TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Reverse Complement HAWDAAAWWWWRAAADAMHTWHBWA TWAAWTTVTGAAAAAHWW HAWDAAAWWWTAAAATWVWKWWDWAHWW Direction: Forward Position #: 11 Overlap #: 15 Alignment: HAWDAAAWWWWRAAADAMHTWHBWA--- ----------TWAAWTTVTGAAAAAHWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Original Motif WWHTWDWWYWBWATTTTAWWWTTTDWTH WTKTTTTTHWTTTTTTBT WWHTWDWWYWBWWTTTTWTWHTTTDWTDBT Direction: Forward Position #: 13 Overlap #: 16 Alignment: WWHTWDWWYWBWATTTTAWWWTTTDWTH-- ------------WTKTTTTTHWTTTTTTBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif ABDAWDAAAHWAWAAAAWWVWKWWDWAHWW DGVBCABTGDWGCGKRRCSR ABDAWDAAAHWAWDRVDHWVTGAWGHRDDDCSR Direction: Forward Position #: 14 Overlap #: 17 Alignment: ABDAWDAAAHWAWAAAAWWVWKWWDWAHWW--- -------------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Reverse Complement MSGDDDKHCWTCAVWDDBKDWTWHTTTDWTDBT TTTDAWATATHATT MSGDDDKHCWTCAVTBTBAWWTWWWWTTWTDBT Direction: Forward Position #: 15 Overlap #: 14 Alignment: MSGDDDKHCWTCAVWDDBKDWTWHTTTDWTDBT --------------TTTDAWATATHATT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 56 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 TFM13 Reverse Complement Reverse Complement TWVHWWWYTTTYTTTTTHTTTVWBH WAHHTVTTYKAAAAWTTRAT TWHHTDTTTTWHWWTTTDWTTVWBH Direction: Forward Position #: 1 Overlap #: 20 Alignment: TWVHWWWYTTTYTTTTTHTTTVWBH WAHHTVTTYKAAAAWTTRAT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Original Motif Original Motif TWHHTDTTTTWHWWTTTDWTTVWBH CYYCBBCYYYTCCHCCTYYY CYYCDDCHYHTYYBHYWHYYTDWTTVWBH Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----TWHHTDTTTTWHWWTTTDWTTVWBH CYYCBBCYYYTCCHCCTYYY--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif HDWVAAWDAMMHWKHVMKAHMHGDDGKMG DGVBCABTGDWGCGKRRCSR HDWVAAWDAMMHDGVDMDVBVHDGVGKVGCSR Direction: Forward Position #: 13 Overlap #: 17 Alignment: HDWVAAWDAMMHWKHVMKAHMHGDDGKMG--- ------------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Original Motif MSGCBRCVCHHVVBHRHBCDHYYTDWTTVWBH WTKTTTTTHWTTTTTTBT MSGCBRCVCHHVVBWDBTYTTTHTTTTTDTBW Direction: Forward Position #: 15 Overlap #: 18 Alignment: MSGCBRCVCHHVVBHRHBCDHYYTDWTTVWBH --------------WTKTTTTTHWTTTTTTBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif MSGCBRCVCHHVVBWDBTYTTTHTTTTTDTBW WWHTTTTTCABAAWTTWA MSGCBRCVCHHVVBWWHTTTTTCWBWWTTTHA Direction: Forward Position #: 15 Overlap #: 18 Alignment: MSGCBRCVCHHVVBWDBTYTTTHTTTTTDTBW --------------WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 03-23-2023 12:38:17 Runtime: 12.9624 seconds MOTIFSIM is written by Ngoc Tam L. 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