**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 1 Number of top significant motifs: 3 Number of best matches: 3 Similarity cutoff: >= 0.75 Matching motif database: None Motif tree: No Combined similar motifs: No Output file type: All Output file format: Text Input files and motif counts File name Count of motifs Dataset # U20230323-memeInput.txt 20 1 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** **************************************************************************************************************************************************************************************************** ****************************************************************** Top 3 Significant Motifs - Global Matching (Highest to Lowest) ****************************************************************** There is no global matching for 1 motif file. **************************************************************************************************************************************************************************************************** **************************************************************** Significant Motifs - Global and Local Matching (Highest to Lowest) **************************************************************** Dataset #: 1 Motif ID: 6 Motif name: Motif 6 Consensus sequence (original motif): CSKCCCCGCCCCSY Consensus sequence (reverse complement motif): MSGGGGCGGGGYSG ************************************************************** Best Matches for Significant Motif ID 6 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 Motif 1 Original Motif Reverse Complement Forward 4 11 0.0157992 Consensus sequence (original motif): RGRAGARRGARRAR Consensus sequence (reverse complement motif): MTMMTCMMTCTKCK Alignment: MTMMTCMMTCTKCK--- ---CSKCCCCGCCCCSY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 20 Motif name: Motif 20 Consensus sequence (original motif): ATAAAA Consensus sequence (reverse complement motif): TTTTAT ************************************************************** Best Matches for Significant Motif ID 20 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 Motif 14 Reverse Complement Reverse Complement Backward 7 6 0 Consensus sequence (original motif): ATMACAATAAAA Consensus sequence (reverse complement motif): TTTTATTGTYAT Alignment: TTTTATTGTYAT TTTTAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 Motif 4 Reverse Complement Reverse Complement Backward 6 6 0.0208333 Consensus sequence (original motif): AWTAAATAYAATTT Consensus sequence (reverse complement motif): AAATTKTATTTAWT Alignment: AAATTKTATTTAWT ---TTTTAT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 Motif 7 Reverse Complement Reverse Complement Backward 6 6 0.0208333 Consensus sequence (original motif): AAATRWTAAAATCA Consensus sequence (reverse complement motif): TGATTTTAWKATTT Alignment: TGATTTTAWKATTT ---TTTTAT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 9 Motif name: Motif 9 Consensus sequence (original motif): TTTCATAAWT Consensus sequence (reverse complement motif): AWTTATGAAA ************************************************************** Best Matches for Significant Motif ID 9 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 Motif 10 Reverse Complement Original Motif Forward 2 10 0.01875 Consensus sequence (original motif): ATTTWATGAAA Consensus sequence (reverse complement motif): TTTCATWAAAT Alignment: ATTTWATGAAA -AWTTATGAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 5 Motif 5 Reverse Complement Original Motif Forward 5 10 0.0375 Consensus sequence (original motif): AATTYDGAARTAWW Consensus sequence (reverse complement motif): WWTAKTTCDKAATT Alignment: AATTYDGAARTAWW ----AWTTATGAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 Motif 7 Reverse Complement Original Motif Backward 2 10 0.04375 Consensus sequence (original motif): AAATRWTAAAATCA Consensus sequence (reverse complement motif): TGATTTTAWKATTT Alignment: AAATRWTAAAATCA ---AWTTATGAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- **************************************************************************************************************************************************************************************************** ********************************************************************** Best Matches for Each Motif (Highest to Lowest) ***************************************************************************** Dataset #: 1 Motif ID: 1 Motif name: Motif 1 Consensus sequence (original motif): RGRAGARRGARRAR Consensus sequence (reverse complement motif): MTMMTCMMTCTKCK ************************************************************************ Best Matches for Motif ID 1 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 Motif 2 Original Motif Original Motif Forward 2 13 0.0388225 Consensus sequence (original motif): AWAAAWTWAAASWA Consensus sequence (reverse complement motif): TWSTTTWAWTTTWT Alignment: AWAAAWTWAAASWA- -RGRAGARRGARRAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 6 Motif 6 Original Motif Reverse Complement Backward 4 11 1.03508 Consensus sequence (original motif): CSKCCCCGCCCCSY Consensus sequence (reverse complement motif): MSGGGGCGGGGYSG Alignment: ---MSGGGGCGGGGYSG RGRAGARRGARRAR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 5 Motif 5 Original Motif Original Motif Forward 6 9 2.03222 Consensus sequence (original motif): AATTYDGAARTAWW Consensus sequence (reverse complement motif): WWTAKTTCDKAATT Alignment: AATTYDGAARTAWW----- -----RGRAGARRGARRAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 Motif 8 Reverse Complement Original Motif Backward 7 8 2.54053 Consensus sequence (original motif): AATHATATWTHAAA Consensus sequence (reverse complement motif): TTTDAWATATHATT Alignment: ------AATHATATWTHAAA MTMMTCMMTCTKCK------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 2 Motif name: Motif 2 Consensus sequence (original motif): AWAAAWTWAAASWA Consensus sequence (reverse complement motif): TWSTTTWAWTTTWT ************************************************************************ Best Matches for Motif ID 2 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 Motif 7 Reverse Complement Reverse Complement Backward 1 14 0.0394231 Consensus sequence (original motif): AAATRWTAAAATCA Consensus sequence (reverse complement motif): TGATTTTAWKATTT Alignment: TGATTTTAWKATTT TWSTTTWAWTTTWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 Motif 4 Reverse Complement Reverse Complement Forward 1 14 0.0449176 Consensus sequence (original motif): AWTAAATAYAATTT Consensus sequence (reverse complement motif): AAATTKTATTTAWT Alignment: AAATTKTATTTAWT TWSTTTWAWTTTWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 Motif 8 Original Motif Reverse Complement Backward 1 14 0.0594551 Consensus sequence (original motif): AATHATATWTHAAA Consensus sequence (reverse complement motif): TTTDAWATATHATT Alignment: TTTDAWATATHATT AWAAAWTWAAASWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 3 Motif name: Motif 3 Consensus sequence (original motif): AAAAWTTRCWT Consensus sequence (reverse complement motif): AWGKAAWTTTT ************************************************************************ Best Matches for Motif ID 3 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 Motif 4 Original Motif Reverse Complement Backward 4 11 0.0786484 Consensus sequence (original motif): AWTAAATAYAATTT Consensus sequence (reverse complement motif): AAATTKTATTTAWT Alignment: AAATTKTATTTAWT AAAAWTTRCWT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 Motif 8 Reverse Complement Original Motif Backward 4 11 0.0820375 Consensus sequence (original motif): AATHATATWTHAAA Consensus sequence (reverse complement motif): TTTDAWATATHATT Alignment: AATHATATWTHAAA AWGKAAWTTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 Motif 7 Reverse Complement Reverse Complement Forward 4 11 0.083433 Consensus sequence (original motif): AAATRWTAAAATCA Consensus sequence (reverse complement motif): TGATTTTAWKATTT Alignment: TGATTTTAWKATTT ---AWGKAAWTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 4 Motif name: Motif 4 Consensus sequence (original motif): AWTAAATAYAATTT Consensus sequence (reverse complement motif): AAATTKTATTTAWT ************************************************************************ Best Matches for Motif ID 4 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 Motif 2 Reverse Complement Reverse Complement Backward 1 14 0.101648 Consensus sequence (original motif): AWAAAWTWAAASWA Consensus sequence (reverse complement motif): TWSTTTWAWTTTWT Alignment: TWSTTTWAWTTTWT AAATTKTATTTAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 Motif 7 Reverse Complement Reverse Complement Backward 1 14 0.107143 Consensus sequence (original motif): AAATRWTAAAATCA Consensus sequence (reverse complement motif): TGATTTTAWKATTT Alignment: TGATTTTAWKATTT AAATTKTATTTAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 5 Motif 5 Reverse Complement Original Motif Backward 1 14 0.111607 Consensus sequence (original motif): AATTYDGAARTAWW Consensus sequence (reverse complement motif): WWTAKTTCDKAATT Alignment: AATTYDGAARTAWW AAATTKTATTTAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 5 Motif name: Motif 5 Consensus sequence (original motif): AATTYDGAARTAWW Consensus sequence (reverse complement motif): WWTAKTTCDKAATT ************************************************************************ Best Matches for Motif ID 5 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 Motif 4 Reverse Complement Original Motif Forward 1 14 0.0741071 Consensus sequence (original motif): AWTAAATAYAATTT Consensus sequence (reverse complement motif): AAATTKTATTTAWT Alignment: AWTAAATAYAATTT WWTAKTTCDKAATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 Motif 7 Reverse Complement Reverse Complement Backward 1 14 0.0763393 Consensus sequence (original motif): AAATRWTAAAATCA Consensus sequence (reverse complement motif): TGATTTTAWKATTT Alignment: TGATTTTAWKATTT WWTAKTTCDKAATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 Motif 8 Reverse Complement Reverse Complement Backward 1 14 0.0852679 Consensus sequence (original motif): AATHATATWTHAAA Consensus sequence (reverse complement motif): TTTDAWATATHATT Alignment: TTTDAWATATHATT WWTAKTTCDKAATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 6 Motif name: Motif 6 Consensus sequence (original motif): CSKCCCCGCCCCSY Consensus sequence (reverse complement motif): MSGGGGCGGGGYSG ************************************************************************ Best Matches for Motif ID 6 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 Motif 1 Original Motif Reverse Complement Forward 4 11 0.0157992 Consensus sequence (original motif): RGRAGARRGARRAR Consensus sequence (reverse complement motif): MTMMTCMMTCTKCK Alignment: MTMMTCMMTCTKCK--- ---CSKCCCCGCCCCSY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 7 Motif name: Motif 7 Consensus sequence (original motif): AAATRWTAAAATCA Consensus sequence (reverse complement motif): TGATTTTAWKATTT ************************************************************************ Best Matches for Motif ID 7 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 Motif 2 Reverse Complement Reverse Complement Backward 1 14 0.0961539 Consensus sequence (original motif): AWAAAWTWAAASWA Consensus sequence (reverse complement motif): TWSTTTWAWTTTWT Alignment: TWSTTTWAWTTTWT TGATTTTAWKATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 Motif 4 Reverse Complement Reverse Complement Backward 1 14 0.107143 Consensus sequence (original motif): AWTAAATAYAATTT Consensus sequence (reverse complement motif): AAATTKTATTTAWT Alignment: AAATTKTATTTAWT TGATTTTAWKATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 5 Motif 5 Reverse Complement Reverse Complement Forward 1 14 0.113839 Consensus sequence (original motif): AATTYDGAARTAWW Consensus sequence (reverse complement motif): WWTAKTTCDKAATT Alignment: WWTAKTTCDKAATT TGATTTTAWKATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 8 Motif name: Motif 8 Consensus sequence (original motif): AATHATATWTHAAA Consensus sequence (reverse complement motif): TTTDAWATATHATT ************************************************************************ Best Matches for Motif ID 8 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 Motif 2 Original Motif Reverse Complement Backward 1 14 0.0675748 Consensus sequence (original motif): AWAAAWTWAAASWA Consensus sequence (reverse complement motif): TWSTTTWAWTTTWT Alignment: TWSTTTWAWTTTWT AATHATATWTHAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 5 Motif 5 Reverse Complement Reverse Complement Backward 1 14 0.0741568 Consensus sequence (original motif): AATTYDGAARTAWW Consensus sequence (reverse complement motif): WWTAKTTCDKAATT Alignment: WWTAKTTCDKAATT TTTDAWATATHATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 Motif 4 Original Motif Reverse Complement Backward 2 13 0.547543 Consensus sequence (original motif): AWTAAATAYAATTT Consensus sequence (reverse complement motif): AAATTKTATTTAWT Alignment: -AAATTKTATTTAWT AATHATATWTHAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 9 Motif name: Motif 9 Consensus sequence (original motif): TTTCATAAWT Consensus sequence (reverse complement motif): AWTTATGAAA ************************************************************************ Best Matches for Motif ID 9 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 Motif 10 Reverse Complement Original Motif Forward 2 10 0.01875 Consensus sequence (original motif): ATTTWATGAAA Consensus sequence (reverse complement motif): TTTCATWAAAT Alignment: ATTTWATGAAA -AWTTATGAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 5 Motif 5 Reverse Complement Original Motif Forward 5 10 0.0375 Consensus sequence (original motif): AATTYDGAARTAWW Consensus sequence (reverse complement motif): WWTAKTTCDKAATT Alignment: AATTYDGAARTAWW ----AWTTATGAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 Motif 7 Reverse Complement Original Motif Backward 2 10 0.04375 Consensus sequence (original motif): AAATRWTAAAATCA Consensus sequence (reverse complement motif): TGATTTTAWKATTT Alignment: AAATRWTAAAATCA ---AWTTATGAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 10 Motif name: Motif 10 Consensus sequence (original motif): ATTTWATGAAA Consensus sequence (reverse complement motif): TTTCATWAAAT ************************************************************************ Best Matches for Motif ID 10 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 Motif 4 Reverse Complement Original Motif Forward 3 11 0.0795455 Consensus sequence (original motif): AWTAAATAYAATTT Consensus sequence (reverse complement motif): AAATTKTATTTAWT Alignment: AWTAAATAYAATTT --TTTCATWAAAT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 Motif 7 Reverse Complement Original Motif Backward 2 11 0.0795455 Consensus sequence (original motif): AAATRWTAAAATCA Consensus sequence (reverse complement motif): TGATTTTAWKATTT Alignment: AAATRWTAAAATCA --TTTCATWAAAT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 17 Motif 17 Original Motif Reverse Complement Forward 1 11 0.102273 Consensus sequence (original motif): TTAGWTWATAA Consensus sequence (reverse complement motif): TTATWAWCTAA Alignment: TTATWAWCTAA ATTTWATGAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 11 Motif name: Motif 11 Consensus sequence (original motif): AAAACAAA Consensus sequence (reverse complement motif): TTTGTTTT ************************************************************************ Best Matches for Motif ID 11 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 Motif 14 Reverse Complement Reverse Complement Forward 2 8 0.0625 Consensus sequence (original motif): ATMACAATAAAA Consensus sequence (reverse complement motif): TTTTATTGTYAT Alignment: TTTTATTGTYAT -TTTGTTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 16 Motif 16 Original Motif Original Motif Forward 2 8 0.0625 Consensus sequence (original motif): AAAAATGAAT Consensus sequence (reverse complement motif): ATTCATTTTT Alignment: AAAAATGAAT -AAAACAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 Motif 4 Reverse Complement Reverse Complement Backward 4 8 0.078125 Consensus sequence (original motif): AWTAAATAYAATTT Consensus sequence (reverse complement motif): AAATTKTATTTAWT Alignment: AAATTKTATTTAWT ---TTTGTTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 12 Motif name: Motif 12 Consensus sequence (original motif): AAAGATTT Consensus sequence (reverse complement motif): AAATCTTT ************************************************************************ Best Matches for Motif ID 12 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 19 Motif 19 Reverse Complement Reverse Complement Backward 4 8 0 Consensus sequence (original motif): TTMAAAGATTT Consensus sequence (reverse complement motif): AAATCTTTYAA Alignment: AAATCTTTYAA AAATCTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 15 Motif 15 Original Motif Reverse Complement Forward 5 8 0.0625 Consensus sequence (original motif): ACAAWTRATTTTGA Consensus sequence (reverse complement motif): TCAAAATKAWTTGT Alignment: TCAAAATKAWTTGT ----AAAGATTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 Motif 7 Reverse Complement Original Motif Backward 1 8 0.0625 Consensus sequence (original motif): AAATRWTAAAATCA Consensus sequence (reverse complement motif): TGATTTTAWKATTT Alignment: AAATRWTAAAATCA ------AAATCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 13 Motif name: Motif 13 Consensus sequence (original motif): AWAAATAA Consensus sequence (reverse complement motif): TTATTTWT ************************************************************************ Best Matches for Motif ID 13 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 16 Motif 16 Original Motif Original Motif Forward 1 8 0.046875 Consensus sequence (original motif): AAAAATGAAT Consensus sequence (reverse complement motif): ATTCATTTTT Alignment: AAAAATGAAT AWAAATAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 Motif 4 Reverse Complement Reverse Complement Forward 6 8 0.046875 Consensus sequence (original motif): AWTAAATAYAATTT Consensus sequence (reverse complement motif): AAATTKTATTTAWT Alignment: AAATTKTATTTAWT -----TTATTTWT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 Motif 14 Original Motif Original Motif Forward 3 8 0.0625 Consensus sequence (original motif): ATMACAATAAAA Consensus sequence (reverse complement motif): TTTTATTGTYAT Alignment: ATMACAATAAAA --AWAAATAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 14 Motif name: Motif 14 Consensus sequence (original motif): ATMACAATAAAA Consensus sequence (reverse complement motif): TTTTATTGTYAT ************************************************************************ Best Matches for Motif ID 14 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 Motif 7 Reverse Complement Reverse Complement Backward 3 12 0.104167 Consensus sequence (original motif): AAATRWTAAAATCA Consensus sequence (reverse complement motif): TGATTTTAWKATTT Alignment: TGATTTTAWKATTT TTTTATTGTYAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 Motif 4 Original Motif Original Motif Backward 2 12 0.114583 Consensus sequence (original motif): AWTAAATAYAATTT Consensus sequence (reverse complement motif): AAATTKTATTTAWT Alignment: AWTAAATAYAATTT -ATMACAATAAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 Motif 2 Original Motif Original Motif Forward 1 12 0.114583 Consensus sequence (original motif): AWAAAWTWAAASWA Consensus sequence (reverse complement motif): TWSTTTWAWTTTWT Alignment: AWAAAWTWAAASWA ATMACAATAAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 15 Motif name: Motif 15 Consensus sequence (original motif): ACAAWTRATTTTGA Consensus sequence (reverse complement motif): TCAAAATKAWTTGT ************************************************************************ Best Matches for Motif ID 15 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 Motif 4 Reverse Complement Original Motif Forward 1 14 0.1 Consensus sequence (original motif): AWTAAATAYAATTT Consensus sequence (reverse complement motif): AAATTKTATTTAWT Alignment: AWTAAATAYAATTT TCAAAATKAWTTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 Motif 8 Reverse Complement Reverse Complement Forward 3 12 1.08264 Consensus sequence (original motif): AATHATATWTHAAA Consensus sequence (reverse complement motif): TTTDAWATATHATT Alignment: TTTDAWATATHATT-- --TCAAAATKAWTTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 Motif 7 Original Motif Original Motif Backward 3 12 1.1 Consensus sequence (original motif): AAATRWTAAAATCA Consensus sequence (reverse complement motif): TGATTTTAWKATTT Alignment: --AAATRWTAAAATCA ACAAWTRATTTTGA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 16 Motif name: Motif 16 Consensus sequence (original motif): AAAAATGAAT Consensus sequence (reverse complement motif): ATTCATTTTT ************************************************************************ Best Matches for Motif ID 16 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 15 Motif 15 Reverse Complement Original Motif Backward 4 10 0.05 Consensus sequence (original motif): ACAAWTRATTTTGA Consensus sequence (reverse complement motif): TCAAAATKAWTTGT Alignment: ACAAWTRATTTTGA -ATTCATTTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 Motif 9 Original Motif Reverse Complement Forward 1 10 0.0875 Consensus sequence (original motif): TTTCATAAWT Consensus sequence (reverse complement motif): AWTTATGAAA Alignment: AWTTATGAAA AAAAATGAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 Motif 4 Original Motif Original Motif Backward 2 10 0.0875 Consensus sequence (original motif): AWTAAATAYAATTT Consensus sequence (reverse complement motif): AAATTKTATTTAWT Alignment: AWTAAATAYAATTT ---AAAAATGAAT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 17 Motif name: Motif 17 Consensus sequence (original motif): TTAGWTWATAA Consensus sequence (reverse complement motif): TTATWAWCTAA ************************************************************************ Best Matches for Motif ID 17 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 5 Motif 5 Reverse Complement Original Motif Backward 3 11 0.09375 Consensus sequence (original motif): AATTYDGAARTAWW Consensus sequence (reverse complement motif): WWTAKTTCDKAATT Alignment: AATTYDGAARTAWW -TTATWAWCTAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 Motif 10 Original Motif Reverse Complement Backward 1 11 0.102273 Consensus sequence (original motif): ATTTWATGAAA Consensus sequence (reverse complement motif): TTTCATWAAAT Alignment: TTTCATWAAAT TTAGWTWATAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 Motif 7 Original Motif Reverse Complement Backward 1 11 0.102273 Consensus sequence (original motif): AAATRWTAAAATCA Consensus sequence (reverse complement motif): TGATTTTAWKATTT Alignment: TGATTTTAWKATTT ---TTAGWTWATAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 18 Motif name: Motif 18 Consensus sequence (original motif): TTCWTAGATTAWA Consensus sequence (reverse complement motif): TWTAATCTAWGAA ************************************************************************ Best Matches for Motif ID 18 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 Motif 8 Original Motif Original Motif Forward 2 13 0.0641025 Consensus sequence (original motif): AATHATATWTHAAA Consensus sequence (reverse complement motif): TTTDAWATATHATT Alignment: AATHATATWTHAAA -TTCWTAGATTAWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 5 Motif 5 Original Motif Original Motif Forward 3 12 0.5625 Consensus sequence (original motif): AATTYDGAARTAWW Consensus sequence (reverse complement motif): WWTAKTTCDKAATT Alignment: AATTYDGAARTAWW- --TTCWTAGATTAWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 Motif 7 Reverse Complement Reverse Complement Backward 3 12 0.5625 Consensus sequence (original motif): AAATRWTAAAATCA Consensus sequence (reverse complement motif): TGATTTTAWKATTT Alignment: -TGATTTTAWKATTT TWTAATCTAWGAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 19 Motif name: Motif 19 Consensus sequence (original motif): TTMAAAGATTT Consensus sequence (reverse complement motif): AAATCTTTYAA ************************************************************************ Best Matches for Motif ID 19 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 18 Motif 18 Original Motif Original Motif Backward 3 11 0.0681818 Consensus sequence (original motif): TTCWTAGATTAWA Consensus sequence (reverse complement motif): TWTAATCTAWGAA Alignment: TTCWTAGATTAWA TTMAAAGATTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 Motif 7 Reverse Complement Original Motif Forward 4 11 0.0681818 Consensus sequence (original motif): AAATRWTAAAATCA Consensus sequence (reverse complement motif): TGATTTTAWKATTT Alignment: AAATRWTAAAATCA ---AAATCTTTYAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 15 Motif 15 Reverse Complement Original Motif Backward 3 11 0.102273 Consensus sequence (original motif): ACAAWTRATTTTGA Consensus sequence (reverse complement motif): TCAAAATKAWTTGT Alignment: ACAAWTRATTTTGA -AAATCTTTYAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 20 Motif name: Motif 20 Consensus sequence (original motif): ATAAAA Consensus sequence (reverse complement motif): TTTTAT ************************************************************************ Best Matches for Motif ID 20 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 Motif 14 Reverse Complement Reverse Complement Backward 7 6 0 Consensus sequence (original motif): ATMACAATAAAA Consensus sequence (reverse complement motif): TTTTATTGTYAT Alignment: TTTTATTGTYAT TTTTAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 Motif 4 Reverse Complement Reverse Complement Backward 6 6 0.0208333 Consensus sequence (original motif): AWTAAATAYAATTT Consensus sequence (reverse complement motif): AAATTKTATTTAWT Alignment: AAATTKTATTTAWT ---TTTTAT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 Motif 7 Reverse Complement Reverse Complement Backward 6 6 0.0208333 Consensus sequence (original motif): AAATRWTAAAATCA Consensus sequence (reverse complement motif): TGATTTTAWKATTT Alignment: TGATTTTAWKATTT ---TTTTAT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 03-23-2023 10:59:29 Runtime: 0.46275 seconds MOTIFSIM is written by Ngoc Tam L. 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