**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 1 Number of top significant motifs: 5 Number of best matches: 5 Similarity cutoff: >= 0.5 Matching motif database: None Motif tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # U20230328-stremeR.txt 365 1 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** *************************************************************** Combined Motifs for Top Best Match Motif ID 1 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 1 Motif 29 Original Motif Original Motif GGGGTGACAGABGB CTGGGCRACAGAGYRAGACY CKGGGYGACAGAGBDAGACY Direction: Forward Position #: 2 Overlap #: 14 Alignment: -GGGGTGACAGABGB----- CTGGGCRACAGAGYRAGACY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 178 Combined Motif Reverse Complement Original Motif MGTCTHBCTCTGTCMCCCRG ACTGTCTTCCACCTCCACAT MGTCTHBCWCTGTCWYCCASCTCCACAT Direction: Forward Position #: 9 Overlap #: 12 Alignment: MGTCTHBCTCTGTCMCCCRG-------- --------ACTGTCTTCCACCTCCACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 139 Combined Motif Original Motif Original Motif MGTCTHBCWCTGTCWYCCASCTCCACAT AGCCYCTGGYAACCAYYAWT MGTCTHBCWCTGWSYYCCWGSTMMMCAYYAWT Direction: Forward Position #: 13 Overlap #: 16 Alignment: MGTCTHBCWCTGTCWYCCASCTCCACAT---- ------------AGCCYCTGGYAACCAYYAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 357 Combined Motif Reverse Complement Original Motif AWTKMTGYYYASCWGGKKSWCAGWGBDAGACY CAAGTTGACACATAAAATTA AWTKMTGYYYASCWSRRGBTSASASHDARAMTTA Direction: Forward Position #: 15 Overlap #: 18 Alignment: AWTKMTGYYYASCWGGKKSWCAGWGBDAGACY-- --------------CAAGTTGACACATAAAATTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 109 Combined Motif Reverse Complement Reverse Complement TAARTMTDHSTSTSAVCKKSWGSTMMMCAYYAWT TCTCTCTCTCTCTCTCTCTC TAARTMTDHSTSTSADCKBBHKCTCHCYMTCWYTC Direction: Forward Position #: 16 Overlap #: 19 Alignment: TAARTMTDHSTSTSAVCKKSWGSTMMMCAYYAWT- ---------------TCTCTCTCTCTCTCTCTCTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 53 Combined Motif Original Motif Original Motif TAARTMTDHSTSTSADCKBBHKCTCHCYMTCWYTC GTCCCATCGACCACCCAAG TAARTMTDHSTSTSAGYYCCATCKACCHCYCAAKC Direction: Forward Position #: 16 Overlap #: 19 Alignment: TAARTMTDHSTSTSADCKBBHKCTCHCYMTCWYTC ---------------GTCCCATCGACCACCCAAG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 2 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Motif 155 Original Motif Original Motif ATTAGCYRGGCRTGGTGGC TCCCTCCCGGACGGGGYGGC TMYYWSCCGGRCGKGGYGGC Direction: Forward Position #: 2 Overlap #: 19 Alignment: -ATTAGCYRGGCRTGGTGGC TCCCTCCCGGACGGGGYGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 165 Combined Motif Reverse Complement Original Motif GCCMCCYCGMCCGGSWKKRA ATCTGACAGGAGGYRGAGCT GCCMCCYCRYCYGRCAGGARGYRGAGCT Direction: Forward Position #: 9 Overlap #: 12 Alignment: GCCMCCYCGMCCGGSWKKRA-------- --------ATCTGACAGGAGGYRGAGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 65 Combined Motif Reverse Complement Original Motif AGCTCMKCKTCCTGMCMGMKGKGGYGGC AGAAATCGAGCRCAGCGCCG AGCTCMKCKTCCWGAMAKCGRGSGYRGCGCCG Direction: Forward Position #: 13 Overlap #: 16 Alignment: AGCTCMKCKTCCTGMCMGMKGKGGYGGC---- ------------AGAAATCGAGCRCAGCGCCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 43 Combined Motif Original Motif Reverse Complement AGCTCMKCKTCCWGAMAKCGRGSGYRGCGCCG AGGAGRCMCTCTGCCTGGC AGCTCMKCKTCCWGARRWBRVVCKCDGCSYSGC Direction: Forward Position #: 15 Overlap #: 18 Alignment: AGCTCMKCKTCCWGAMAKCGRGSGYRGCGCCG- --------------AGGAGRCMCTCTGCCTGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 53 Combined Motif Reverse Complement Reverse Complement GCSMSGCDGRGVBMBWMMTCWGGARGYRGAGCT CTTGGGTGGTCGATGGGAC GCSMSGCDGRGVBMCTTGKSTGGWVGMKGRGMY Direction: Forward Position #: 15 Overlap #: 19 Alignment: GCSMSGCDGRGVBMBWMMTCWGGARGYRGAGCT --------------CTTGGGTGGTCGATGGGAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 3 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Motif 350 Original Motif Original Motif GCTGGAGTGCAGTGGCRYGA TCTGGAGTGGACCTCCAGCA KCTGGAGTGSASYKSCASSA Direction: Forward Position #: 1 Overlap #: 20 Alignment: GCTGGAGTGCAGTGGCRYGA TCTGGAGTGGACCTCCAGCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 100 Combined Motif Original Motif Original Motif KCTGGAGTGSASYKSCASSA GCTGGCCCGCAAGCGCCGCG KCTGGAGTGCWGKCCCRCAAGCGCCGCG Direction: Forward Position #: 9 Overlap #: 12 Alignment: KCTGGAGTGSASYKSCASSA-------- --------GCTGGCCCGCAAGCGCCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 105 Combined Motif Reverse Complement Original Motif CGCGGCGCTTGMGGGYCWGCACTCCAGR GCCTCTCCCTCCACACCTCC CGCGGCGCTTGMGSCTCTSCMYYCMMRVCTCC Direction: Forward Position #: 13 Overlap #: 16 Alignment: CGCGGCGCTTGMGGGYCWGCACTCCAGR---- ------------GCCTCTCCCTCCACACCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 109 Combined Motif Original Motif Reverse Complement CGCGGCGCTTGMGSCTCTSCMYYCMMRVCTCC TCTCTCTCTCTCTCTCTCTC CGCGGCGCTTGMGSYYYHBCHCTCHCDCYYYCTC Direction: Forward Position #: 15 Overlap #: 18 Alignment: CGCGGCGCTTGMGSCTCTSCMYYCMMRVCTCC-- --------------TCTCTCTCTCTCTCTCTCTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 292 Combined Motif Reverse Complement Original Motif GAGKMKGDGHGAGHGVHKKMSCRCAAGCGCCGCG AAGACCTTCCAGTGGGACAA GAGKMKGDGHGAGHGAAGRCCYKCCAGYGSSRCRA Direction: Forward Position #: 16 Overlap #: 19 Alignment: GAGKMKGDGHGAGHGVHKKMSCRCAAGCGCCGCG- ---------------AAGACCTTCCAGTGGGACAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 4 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Motif 191 Original Motif Original Motif GCTGGGATTACAGG AAAGTGCCGAGAKTGCAGC GCYGRGATTRCAGSAAAGT Direction: Backward Position #: 1 Overlap #: 14 Alignment: -----GCTGGGATTACAGG AAAGTGCCGAGAKTGCAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 294 Original Motif Original Motif GCYGRGATTRCAGSAAAGT AGCTGTGAGAAGAGGGCCAC AGCTGTGAGMAGAGRKYSMMGSAAAGT Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------GCYGRGATTRCAGSAAAGT AGCTGTGAGAAGAGGGCCAC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 115 Original Motif Reverse Complement AGCTGTGAGMAGAGRKYSMMGSAAAGT HAGTGGKATTGCTGGATCAT HAGYKGTRWKVMKRGATCAHMGSAAAGT Direction: Forward Position #: 2 Overlap #: 19 Alignment: -AGCTGTGAGMAGAGRKYSMMGSAAAGT HAGTGGKATTGCTGGATCAT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 193 Combined Motif Reverse Complement Reverse Complement ACTTTSCYHTGATCMRRVRWKACRMCTH GKCTGTACCCCCATTGTAT ACTTTSCYHTGAKYCTGHRHBMCMAYTGTAT Direction: Forward Position #: 13 Overlap #: 16 Alignment: ACTTTSCYHTGATCMRRVRWKACRMCTH--- ------------GKCTGTACCCCCATTGTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 100 Combined Motif Original Motif Original Motif ACTTTSCYHTGAKYCTGHRHBMCMAYTGTAT GCTGGCCCGCAAGCGCCGCG ACTTTSCYHTGAKGCTGGMCCGCAAKYGYMKCG Direction: Forward Position #: 14 Overlap #: 18 Alignment: ACTTTSCYHTGAKYCTGHRHBMCMAYTGTAT-- -------------GCTGGCCCGCAAGCGCCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 5 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Motif 26 Original Motif Original Motif CCTCRGCCTCC CTCCTGCCTCAGCCTCCCRA CTCCTGCCTCAGCCTCCCRA Direction: Forward Position #: 7 Overlap #: 11 Alignment: ------CCTCRGCCTCC--- CTCCTGCCTCAGCCTCCCRA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 105 Combined Motif Reverse Complement Reverse Complement TMGGGAGGCTGAGGCAGGAG GGAGGTGTGGAGGGAGAGGC TMGGGAGGSKRRGKSWGGAGGGAGAGGC Direction: Forward Position #: 9 Overlap #: 12 Alignment: TMGGGAGGCTGAGGCAGGAG-------- --------GGAGGTGTGGAGGGAGAGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 165 Combined Motif Original Motif Original Motif TMGGGAGGSKRRGKSWGGAGGGAGAGGC ATCTGACAGGAGGYRGAGCT TMGGGAGGSKRRRTCTGRMRGGAGRSGSAGCT Direction: Forward Position #: 13 Overlap #: 16 Alignment: TMGGGAGGSKRRGKSWGGAGGGAGAGGC---- ------------ATCTGACAGGAGGYRGAGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 273 Combined Motif Reverse Complement Reverse Complement AGCTSCSKCTCCMYMCAGAMKKYSCCTCCCRA GTAGGCCTAGGCT AGCTSCSKCTCCMYGYAGRCBTMGSCTCCCRA Direction: Forward Position #: 15 Overlap #: 13 Alignment: AGCTSCSKCTCCMYMCAGAMKKYSCCTCCCRA --------------GTAGGCCTAGGCT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 47 Combined Motif Original Motif Original Motif AGCTSCSKCTCCMYGYAGRCBTMGSCTCCCRA GCCTCAGTTTCCY AGCTSCSKCTCCMYGCMKVMGTTKCCTCCCRA Direction: Forward Position #: 15 Overlap #: 13 Alignment: AGCTSCSKCTCCMYGYAGRCBTMGSCTCCCRA --------------GCCTCAGTTTCCY----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 6 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Motif 178 Reverse Complement Reverse Complement GAGSTTGCAGTGAGC ATGTGGAGGTGGAAGACAGT ATGTGGAGGTKGMAGWSAGY Direction: Forward Position #: 6 Overlap #: 15 Alignment: -----GAGSTTGCAGTGAGC ATGTGGAGGTGGAAGACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 292 Combined Motif Original Motif Reverse Complement ATGTGGAGGTKGMAGWSAGY TTGTCCCACTGGAAGGTCTT ATGTGGAGKTGKCMSACWGBAAGGTCTT Direction: Forward Position #: 9 Overlap #: 12 Alignment: ATGTGGAGGTKGMAGWSAGY-------- --------TTGTCCCACTGGAAGGTCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 139 Combined Motif Reverse Complement Original Motif AAGACCTTBCWGTSYGRCARCTCCACAT AGCCYCTGGYAACCAYYAWT AAGACCTTBCWGWGYSVCWGSTMMMCAYYAWT Direction: Forward Position #: 13 Overlap #: 16 Alignment: AAGACCTTBCWGTSYGRCARCTCCACAT---- ------------AGCCYCTGGYAACCAYYAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 159 Combined Motif Reverse Complement Reverse Complement AWTKMTGYYYASCWGVSKCWCWGBAAGGTCTT TGCTCACACAAAGCCTGT AWTKMTGYYYASCWKGCTCACASAAAGSYYKT Direction: Forward Position #: 15 Overlap #: 18 Alignment: AWTKMTGYYYASCWGVSKCWCWGBAAGGTCTT --------------TGCTCACACAAAGCCTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 136 Combined Motif Original Motif Original Motif AWTKMTGYYYASCWKGCTCACASAAAGSYYKT CCCTCACTGCCCGGGG AWTKMTGYYYASCWYSCTCACWGCMMGGBBKT Direction: Forward Position #: 15 Overlap #: 16 Alignment: AWTKMTGYYYASCWKGCTCACASAAAGSYYKT --------------CCCTCACTGCCCGGGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 7 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Motif 145 Original Motif Original Motif GTCTCWAMAAAAAAWAMAAA GCCAGTCACAAAARGACAMA GYCWSWMAMAAAAARAMAAA Direction: Forward Position #: 1 Overlap #: 20 Alignment: GTCTCWAMAAAAAAWAMAAA GCCAGTCACAAAARGACAMA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 83 Combined Motif Reverse Complement Reverse Complement TTTRTKTTTTTRTYWSWGMC GTKTMTATMTACCACATTTT TTTRTKTTKTTTHYABAKACCACATTTT Direction: Forward Position #: 9 Overlap #: 12 Alignment: TTTRTKTTTTTRTYWSWGMC-------- --------GTKTMTATMTACCACATTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 109 Combined Motif Reverse Complement Original Motif AAAATGTGGTYTVTMHAAARAARAMAAA GAGAGAGAGAGAGAGAGAGA AAAATGTGGTYTRWRARARARAGAVARAGAGA Direction: Forward Position #: 13 Overlap #: 16 Alignment: AAAATGTGGTYTVTMHAAARAARAMAAA---- ------------GAGAGAGAGAGAGAGAGAGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 336 Combined Motif Original Motif Original Motif AAAATGTGGTYTRWRARARARAGAVARAGAGA ATGTAACCAAAYACCACCTG AAAATGTGGTYTRWAWGWAAVMAAAAAMSASMTG Direction: Forward Position #: 15 Overlap #: 18 Alignment: AAAATGTGGTYTRWRARARARAGAVARAGAGA-- --------------ATGTAACCAAAYACCACCTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 119 Combined Motif Reverse Complement Original Motif CARSTSRTTTTTRVTTWCWTWMAKACCACATTTT AAGTCCAAGATCAAGGTGYY CARSTSRTTTTTRVTWASTYYMAGAYCAMRKTKTY Direction: Forward Position #: 16 Overlap #: 19 Alignment: CARSTSRTTTTTRVTTWCWTWMAKACCACATTTT- ---------------AAGTCCAAGATCAAGGTGYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 8 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Motif 139 Reverse Complement Original Motif ARCTCCTGKSCTCAAGKGAT AGCCYCTGGYAACCAYYAWT ARCYCCTGGBMWCMASYRAT Direction: Forward Position #: 1 Overlap #: 20 Alignment: ARCTCCTGKSCTCAAGKGAT AGCCYCTGGYAACCAYYAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 119 Combined Motif Original Motif Reverse Complement ARCYCCTGGBMWCMASYRAT KKCACCTTGATCTTGGACTT ARCYCCTGGKMWCMWTGAWYTTGGACTT Direction: Forward Position #: 9 Overlap #: 12 Alignment: ARCYCCTGGBMWCMASYRAT-------- --------KKCACCTTGATCTTGGACTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 48 Combined Motif Original Motif Reverse Complement ARCYCCTGGKMWCMWTGAWYTTGGACTT CGTCGCTCACGCTGGGAGCT ARCYCCTGGKMWCVTYGMTCWYGSWSKKAGCT Direction: Forward Position #: 13 Overlap #: 16 Alignment: ARCYCCTGGKMWCMWTGAWYTTGGACTT---- ------------CGTCGCTCACGCTGGGAGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 65 Combined Motif Reverse Complement Reverse Complement AGCTYYSWSCMWGARCKAVGWRYCCAGGMGMT CGGCGCTGMGCTCGATTTCT AGCTYYSWSCMWGAVSGMGSTGCSCWSGAKYTCT Direction: Forward Position #: 15 Overlap #: 18 Alignment: AGCTYYSWSCMWGARCKAVGWRYCCAGGMGMT-- --------------CGGCGCTGMGCTCGATTTCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 165 Combined Motif Reverse Complement Original Motif AGAMRTCSWGSGCASCYCSVTCWYGSWSKKAGCT ATCTGACAGGAGGYRGAGCT AGAMRTCSWGSGCASMTCTGWCAGGVDGBGRRSYT Direction: Forward Position #: 16 Overlap #: 19 Alignment: AGAMRTCSWGSGCASCYCSVTCWYGSWSKKAGCT- ---------------ATCTGACAGGAGGYRGAGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 9 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Motif 353 Reverse Complement Reverse Complement GCTCCATGTG GCTTCCATGTG GSYTCCATGTG Direction: Forward Position #: 2 Overlap #: 10 Alignment: -GCTCCATGTG GCTTCCATGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 326 Reverse Complement Reverse Complement CACATGGAKSC CCTTTGACTCCATGTC CCTTYRMMTSSATGYC Direction: Forward Position #: 5 Overlap #: 11 Alignment: ----CACATGGAKSC- CCTTTGACTCCATGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 128 Combined Motif Reverse Complement Original Motif GMCATSSARRMMAAGG CCGCACTCGGAGCRG GMCATSCMGCACWMGGAGCRG Direction: Forward Position #: 7 Overlap #: 10 Alignment: GMCATSSARRMMAAGG----- ------CCGCACTCGGAGCRG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 257 Combined Motif Reverse Complement Reverse Complement CMGCTCCYWGTGCYGSATGYC TGTCCATGTGTTCTC CMGCTCCYTGTCCAKGWKKTCTC Direction: Forward Position #: 9 Overlap #: 13 Alignment: CMGCTCCYWGTGCYGSATGYC-- --------TGTCCATGTGTTCTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 320 Combined Motif Reverse Complement Reverse Complement GAGARYWCRTGGACAMGGAGCRG TGGGGCTCCAGATG GAGARYWCRTGGRSMHSSAGMKG Direction: Forward Position #: 10 Overlap #: 14 Alignment: GAGARYWCRTGGACAMGGAGCRG ---------TGGGGCTCCAGATG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 10 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 Motif 43 Reverse Complement Original Motif MCCYGGCWSMGASGSTCCT GCCAGGCAGAGRGKCTCCT VCCHGGCWGAGASGCTCCT Direction: Backward Position #: 1 Overlap #: 19 Alignment: MCCYGGCWSMGASGSTCCT GCCAGGCAGAGRGKCTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 30 Combined Motif Original Motif Original Motif VCCHGGCWGAGASGCTCCT AGGAGCGCCTCTKCCCGGC VCCHGGCAGRRGCGCYYCTKCCCGGC Direction: Forward Position #: 8 Overlap #: 12 Alignment: VCCHGGCWGAGASGCTCCT------- -------AGGAGCGCCTCTKCCCGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 56 Combined Motif Reverse Complement Reverse Complement GCCGGGRAGMKGCGCMMCTGCCHGGV GCCKGGMKCMGTGGCTCAKG GCCGGGRAGMKGCSBVVCKSCSTGGCTCAKG Direction: Forward Position #: 12 Overlap #: 15 Alignment: GCCGGGRAGMKGCGCMMCTGCCHGGV----- -----------GCCKGGMKCMGTGGCTCAKG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 312 Combined Motif Original Motif Original Motif GCCGGGRAGMKGCSBVVCKSCSTGGCTCAKG AGGACTGAGGGTGCCYRGGG GCCGGGRAGMKGCAGGACTGMGKGKSYCMGGGG Direction: Forward Position #: 14 Overlap #: 18 Alignment: GCCGGGRAGMKGCSBVVCKSCSTGGCTCAKG-- -------------AGGACTGAGGGTGCCYRGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 14 Combined Motif Reverse Complement Reverse Complement CCCCYGMSRCYCYCAGTCCTGCYYCTKCCCGGC AGTGACCCGATTTTCCAGGT CCCCYGMSRCYCYCAGTSMCSCBHYTTYCCRGST Direction: Forward Position #: 15 Overlap #: 19 Alignment: CCCCYGMSRCYCYCAGTCCTGCYYCTKCCCGGC- --------------AGTGACCCGATTTTCCAGGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 11 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 11 Motif 350 Original Motif Reverse Complement CTCAAGGTCCA TGCTGGAGGTCCACTCCAGA CTCCAGACTSRAGGTCCATG Direction: Backward Position #: 8 Overlap #: 11 Alignment: --CTCAAGGTCCA------- TGCTGGAGGTCCACTCCAGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 104 Combined Motif Reverse Complement Reverse Complement CATGGACCTMSAGTCTGGAG CTCCAGKTMCATCCATGTTG CATGGACCYHCMRKCTGSAKCCATGTTG Direction: Forward Position #: 9 Overlap #: 12 Alignment: CATGGACCTMSAGTCTGGAG-------- --------CTCCAGKTMCATCCATGTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 179 Combined Motif Original Motif Reverse Complement CATGGACCYHCMRKCTGSAKCCATGTTG GAATACCTCCTGAAGGACCT CATGGACCYHCMGDMTACMTCCWKRWKGACCT Direction: Forward Position #: 13 Overlap #: 16 Alignment: CATGGACCYHCMRKCTGSAKCCATGTTG---- ------------GAATACCTCCTGAAGGACCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 119 Combined Motif Reverse Complement Reverse Complement AGGTCYWKYWGGAYGTAYDCYGHMGGTCCATG KKCACCTTGATCTTGGACTT AGGTCYWKYWGGAYGKMHHCTKDAKSTYSRWSTT Direction: Forward Position #: 15 Overlap #: 18 Alignment: AGGTCYWKYWGGAYGTAYDCYGHMGGTCCATG-- --------------KKCACCTTGATCTTGGACTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 100 Combined Motif Reverse Complement Reverse Complement AASWMSKASYTHRAGDHYRCMTCCWKRWKGACCT CGCGGCGCTTGCGGGCCAGC AASWMSKASYTHRAGVDCGSMKCYTGVDGGMCMKC Direction: Forward Position #: 16 Overlap #: 19 Alignment: AASWMSKASYTHRAGDHYRCMTCCWKRWKGACCT- ---------------CGCGGCGCTTGCGGGCCAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 12 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 12 Motif 170 Reverse Complement Reverse Complement GTTGGCCAGGCTGGTCT ATTGATMKCCAGGGTTGATT GWTSGCCAGGSTKGWYTATT Direction: Backward Position #: 1 Overlap #: 17 Alignment: ---GTTGGCCAGGCTGGTCT ATTGATMKCCAGGGTTGATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 292 Combined Motif Reverse Complement Original Motif AATAMWCRASCCTGGCSAWC AAGACCTTCCAGTGGGACAA AATAMWCRAVSMYSKYCMASTGGGACAA Direction: Forward Position #: 9 Overlap #: 12 Alignment: AATAMWCRASCCTGGCSAWC-------- --------AAGACCTTCCAGTGGGACAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 48 Combined Motif Reverse Complement Reverse Complement TTGTCCCASTYGMRSMRSBTKGWYTATT CGTCGCTCACGCTGGGAGCT TTGTCCCASTYGMGTMGCTYWSDCTRKKAGCT Direction: Forward Position #: 13 Overlap #: 16 Alignment: TTGTCCCASTYGMRSMRSBTKGWYTATT---- ------------CGTCGCTCACGCTGGGAGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 82 Combined Motif Reverse Complement Original Motif AGCTYYMAGHSWKAGCRACRCMASTGGGACAA GCTTAGCACCYGGGCCAGC AGCTYYMAGHSWKAGCKWAGCAMCTGGGMCARC Direction: Forward Position #: 15 Overlap #: 18 Alignment: AGCTYYMAGHSWKAGCRACRCMASTGGGACAA- --------------GCTTAGCACCYGGGCCAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 45 Combined Motif Original Motif Reverse Complement AGCTYYMAGHSWKAGCKWAGCAMCTGGGMCARC CACTTTCCAGACTGGGCA AGCTYYMAGHSWKASMBTWKCMASWSKGGSMAC Direction: Forward Position #: 15 Overlap #: 18 Alignment: AGCTYYMAGHSWKAGCKWAGCAMCTGGGMCARC --------------CACTTTCCAGACTGGGCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 13 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 13 Motif 96 Original Motif Original Motif AAGCAGGGCGAGGCATTGCC AAGCTGAGGGAGCCGGCTCC AAGCWGRGSGAGSCRKYKCC Direction: Forward Position #: 1 Overlap #: 20 Alignment: AAGCAGGGCGAGGCATTGCC AAGCTGAGGGAGCCGGCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 235 Combined Motif Original Motif Reverse Complement AAGCWGRGSGAGSCRKYKCC GCCAATTTCTCCCATTTGGA AAGCWGRGGSMRVYDTCTCCCATTTGGA Direction: Forward Position #: 9 Overlap #: 12 Alignment: AAGCWGRGSGAGSCRKYKCC-------- --------GCCAATTTCTCCCATTTGGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 202 Combined Motif Reverse Complement Original Motif TCCAAATGGGAGADMBMYSCCKCWGCTT ACACATCACAAAGCAGTTTC TCCAAATGGGAGAHACATCMCDMAGCWKTTTC Direction: Forward Position #: 13 Overlap #: 16 Alignment: TCCAAATGGGAGADMBMYSCCKCWGCTT---- ------------ACACATCACAAAGCAGTTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 99 Combined Motif Original Motif Original Motif TCCAAATGGGAGAHACATCMCDMAGCWKTTTC GCAAAKGACATGATYTCATT TCCAAATGGGAGAHRCAWMDSACAKSATTTYMTT Direction: Forward Position #: 15 Overlap #: 18 Alignment: TCCAAATGGGAGAHACATCMCDMAGCWKTTTC-- --------------GCAAAKGACATGATYTCATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 225 Combined Motif Original Motif Reverse Complement TCCAAATGGGAGAHRCAWMDSACAKSATTTYMTT AAGTTCTKGGKTACATGTGC TCCAAATGGGAGAHRMAGWTCWBRGBWWYWTGTKC Direction: Forward Position #: 16 Overlap #: 19 Alignment: TCCAAATGGGAGAHRCAWMDSACAKSATTTYMTT- ---------------AAGTTCTKGGKTACATGTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 14 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 14 Motif 56 Original Motif Reverse Complement ACCTGGAAAATCGGGTCACT GCCKGGMKCMGTGGCTCAKG RCCTGGARMAKYGGSTCAYK Direction: Backward Position #: 1 Overlap #: 20 Alignment: ACCTGGAAAATCGGGTCACT GCCKGGMKCMGTGGCTCAKG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 63 Combined Motif Original Motif Reverse Complement RCCTGGARMAKYGGSTCAYK AAAMAMMKMATGTTCTCACT RCCTGGARAADYRSCTCATKTTCTCACT Direction: Forward Position #: 9 Overlap #: 12 Alignment: RCCTGGARMAKYGGSTCAYK-------- --------AAAMAMMKMATGTTCTCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 176 Combined Motif Reverse Complement Reverse Complement AGTGAGAAYATGAGSKKDTTKTCCAGGK AACAACASACACTGGGGCCT AGTGAGAAYATGAACWDHWYAYMCWGGGGCCT Direction: Forward Position #: 13 Overlap #: 16 Alignment: AGTGAGAAYATGAGSKKDTTKTCCAGGK---- ------------AACAACASACACTGGGGCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 294 Combined Motif Original Motif Original Motif AGTGAGAAYATGAACWDHWYAYMCWGGGGCCT AGCTGTGAGAAGAGGGCCAC AGTGAGAAYATGAAMGHTDTRMVMAGRGGVCYAC Direction: Forward Position #: 15 Overlap #: 18 Alignment: AGTGAGAAYATGAACWDHWYAYMCWGGGGCCT-- --------------AGCTGTGAGAAGAGGGCCAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 52 Combined Motif Original Motif Original Motif AGTGAGAAYATGAAMGHTDTRMVMAGRGGVCYAC GACTGGCAGGCAGCTCCACC AGTGAGAAYATGAAMGAYTKGCARRSAGSTCCACC Direction: Forward Position #: 16 Overlap #: 19 Alignment: AGTGAGAAYATGAAMGHTDTRMVMAGRGGVCYAC- ---------------GACTGGCAGGCAGCTCCACC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 15 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Motif 350 Reverse Complement Original Motif TCACKMGGGAAGCGCAAG TCTGGAGTGGACCTCCAGCA TCWSGAGKGRASCKCMAGCA Direction: Forward Position #: 1 Overlap #: 18 Alignment: TCACKMGGGAAGCGCAAG-- TCTGGAGTGGACCTCCAGCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 164 Combined Motif Reverse Complement Reverse Complement TGCTYGRGSTKCRCTCSWGA GCGMGCGGGAACCGGGGCT TGCTYGRGGYGCGCKSGARMCGGGGCT Direction: Forward Position #: 9 Overlap #: 12 Alignment: TGCTYGRGSTKCRCTCSWGA------- --------GCGMGCGGGAACCGGGGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 196 Combined Motif Reverse Complement Reverse Complement AGCCCCGYKTCSRGCGCMCCKCMAGCA CAAGCCTSKGCAATGGCAGG AGCCCCGYKTCCARSSCTSBGCAAKSRCAGG Direction: Forward Position #: 12 Overlap #: 16 Alignment: AGCCCCGYKTCSRGCGCMCCKCMAGCA---- -----------CAAGCCTSKGCAATGGCAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 53 Combined Motif Reverse Complement Reverse Complement CCTGKSYTTGCBSAGSSKTGGARMCGGGGCT CTTGGGTGGTCGATGGGAC CCTGKSYTTGCBSCKBGGKKGRWCSRKGGSWC Direction: Forward Position #: 14 Overlap #: 18 Alignment: CCTGKSYTTGCBSAGSSKTGGARMCGGGGCT- -------------CTTGGGTGGTCGATGGGAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 332 Combined Motif Reverse Complement Original Motif GWSCCRKSGWMCRYCCVRGSBGCAAKSRCAGG CTGGCCCTCAATGGTTAAAC GWSCCRKSGWMCRYCYGGSCCKCAATGGYWRRAC Direction: Forward Position #: 15 Overlap #: 18 Alignment: GWSCCRKSGWMCRYCCVRGSBGCAAKSRCAGG-- --------------CTGGCCCTCAATGGTTAAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 16 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Motif 293 Reverse Complement Original Motif GGGTCAGGGAGTTCCCTTTC CTGACTGGGAGACACCTCCC SKGWCWGGGAGWYMCCTYYC Direction: Forward Position #: 1 Overlap #: 20 Alignment: GGGTCAGGGAGTTCCCTTTC CTGACTGGGAGACACCTCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 310 Combined Motif Original Motif Original Motif SKGWCWGGGAGWYMCCTYYC CCCATGCAAGTCYRAAATCC SKGWCWGGSMSATVCMWKTCYRAAATCC Direction: Forward Position #: 9 Overlap #: 12 Alignment: SKGWCWGGGAGWYMCCTYYC-------- --------CCCATGCAAGTCYRAAATCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 76 Combined Motif Reverse Complement Reverse Complement GGATTTMKGAYWYGVATSYSCCWGWCRS CMTAGYACAGTGCCTGGCAC GGATTTMKGAYWCSBAKBHCMSTGHCDGGCAC Direction: Forward Position #: 13 Overlap #: 16 Alignment: GGATTTMKGAYWYGVATSYSCCWGWCRS---- ------------CMTAGYACAGTGCCTGGCAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 312 Combined Motif Reverse Complement Reverse Complement GTGCCDGDCASRGHBYTVSGWKTCYRAAATCC CCCMKGGCACCCTCAGTCCT GTGCCDGDCASRGHCCYMBGDCWCCSWMAKYCCT Direction: Forward Position #: 15 Overlap #: 18 Alignment: GTGCCDGDCASRGHBYTVSGWKTCYRAAATCC-- --------------CCCMKGGCACCCTCAGTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 52 Combined Motif Reverse Complement Original Motif AGGMYTRWSGGWGHCBRKGGHCMSTGHCDGGCAC GACTGGCAGGCAGCTCCACC AGGMYTRWSGGWGHCGASKGGCAGKSASHKSCACC Direction: Forward Position #: 16 Overlap #: 19 Alignment: AGGMYTRWSGGWGHCBRKGGHCMSTGHCDGGCAC- ---------------GACTGGCAGGCAGCTCCACC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 17 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 17 Motif 65 Reverse Complement Reverse Complement TGHCCTGCKCCCACTGTCT CGGCGCTGMGCTCGATTTCT CKGHSCTGCGCYCRMTKTCT Direction: Forward Position #: 2 Overlap #: 19 Alignment: -TGHCCTGCKCCCACTGTCT CGGCGCTGMGCTCGATTTCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 312 Combined Motif Reverse Complement Original Motif AGARAYKGMGCGCAGSDCRG AGGACTGAGGGTGCCYRGGG AGARAYKGAGSRCWGVGSGKGCCYRGGG Direction: Forward Position #: 9 Overlap #: 12 Alignment: AGARAYKGMGCGCAGSDCRG-------- --------AGGACTGAGGGTGCCYRGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 193 Combined Motif Original Motif Reverse Complement AGARAYKGAGSRCWGVGSGKGCCYRGGG GKCTGTACCCCCATTGTAT AGARAYKGAGSRSTSTGBRBSCCCAKKGTAT Direction: Forward Position #: 13 Overlap #: 16 Alignment: AGARAYKGAGSRCWGVGSGKGCCYRGGG--- ------------GKCTGTACCCCCATTGTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 96 Combined Motif Reverse Complement Reverse Complement ATACRRTGGGSVKVCASASKSCTCRMTKTCT GGAGCCGGCTCCCTCAGCTT ATACRRTGGGSVKDSAGMCKGCTCMCTBWSYTT Direction: Forward Position #: 14 Overlap #: 18 Alignment: ATACRRTGGGSVKVCASASKSCTCRMTKTCT-- -------------GGAGCCGGCTCCCTCAGCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 109 Combined Motif Original Motif Reverse Complement ATACRRTGGGSVKDSAGMCKGCTCMCTBWSYTT TCTCTCTCTCTCTCTCTCTC ATACRRTGGGSVKDBMKCYBKCTCBCTCTCTYTC Direction: Forward Position #: 15 Overlap #: 19 Alignment: ATACRRTGGGSVKDSAGMCKGCTCMCTBWSYTT- --------------TCTCTCTCTCTCTCTCTCTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 18 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 18 Motif 160 Original Motif Original Motif GAAAAGCGCAGTATTMGGG AAATTACCCAGTCTCAGGTA RAAWWRCSCAGTMTYAGGKA Direction: Forward Position #: 1 Overlap #: 19 Alignment: GAAAAGCGCAGTATTMGGG- AAATTACCCAGTCTCAGGTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 195 Combined Motif Reverse Complement Reverse Complement TYCCTMAYACTGSGMWWTTM ACCCAATWTGTAGTCTTTTA TYCCTMAYACYSVRYWTKTAGTCTTTTA Direction: Forward Position #: 9 Overlap #: 12 Alignment: TYCCTMAYACTGSGMWWTTM-------- --------ACCCAATWTGTAGTCTTTTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 235 Combined Motif Original Motif Reverse Complement TYCCTMAYACYSVRYWTKTAGTCTTTTA GCCAATTTCTCCCATTTGGA TYCCTMAYACYSGVCAWTTWSTCYYWTWTGGA Direction: Forward Position #: 13 Overlap #: 16 Alignment: TYCCTMAYACYSVRYWTKTAGTCTTTTA---- ------------GCCAATTTCTCCCATTTGGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 201 Combined Motif Reverse Complement Reverse Complement TCCAWAWMMGASWAAWTGVCSMGTMTYAGGKA ACCKTCGCGGTGAGTGTTAC TCCAWAWMMGASWAAYYKTCGMGKTKWRKGTWAC Direction: Forward Position #: 15 Overlap #: 18 Alignment: TCCAWAWMMGASWAAWTGVCSMGTMTYAGGKA-- --------------ACCKTCGCGGTGAGTGTTAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 99 Combined Motif Reverse Complement Reverse Complement GTWACRMWRAYCRCGAYKKTTWSTCYYWTWTGGA AATGAKATCATGTCYTTTGC GTWACRMWRAYCRCGAMKGWTWKYMTBTYHTKKRC Direction: Forward Position #: 16 Overlap #: 19 Alignment: GTWACRMWRAYCRCGAYKKTTWSTCYYWTWTGGA- ---------------AATGAKATCATGTCYTTTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 19 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Motif 99 Reverse Complement Reverse Complement MGGGATATAATCTCCTGGTG AATGAKATCATGTCYTTTGC MRKGATATMATSTCCTKKKS Direction: Forward Position #: 1 Overlap #: 20 Alignment: MGGGATATAATCTCCTGGTG AATGAKATCATGTCYTTTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 63 Combined Motif Original Motif Reverse Complement MRKGATATMATSTCCTKKKS AAAMAMMKMATGTTCTCACT MRKGATATAAWCWCCTBDTGTTCTCACT Direction: Forward Position #: 9 Overlap #: 12 Alignment: MRKGATATMATSTCCTKKKS-------- --------AAAMAMMKMATGTTCTCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 336 Combined Motif Reverse Complement Original Motif AGTGAGAACADBAGGWGWTTATATCYKY ATGTAACCAAAYACCACCTG AGTGAGAACADBAKGTAAYYAWATMCBWCCTG Direction: Forward Position #: 13 Overlap #: 16 Alignment: AGTGAGAACADBAGGWGWTTATATCYKY---- ------------ATGTAACCAAAYACCACCTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 67 Combined Motif Original Motif Original Motif AGTGAGAACADBAKGTAAYYAWATMCBWCCTG CTGGGCTCCTGAGTCTGGTG AGTGAGAACADBAKSTGRGCWMMTVMGTCYKGTG Direction: Forward Position #: 15 Overlap #: 18 Alignment: AGTGAGAACADBAKGTAAYYAWATMCBWCCTG-- --------------CTGGGCTCCTGAGTCTGGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 104 Combined Motif Original Motif Reverse Complement AGTGAGAACADBAKSTGRGCWMMTVMGTCYKGTG CTCCAGKTMCATCCATGTTG AGTGAGAACADBAKSYKVCMDBHHCAKYCWTGTKG Direction: Forward Position #: 16 Overlap #: 19 Alignment: AGTGAGAACADBAKSTGRGCWMMTVMGTCYKGTG- ---------------CTCCAGKTMCATCCATGTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 20 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 20 Motif 193 Reverse Complement Reverse Complement GGTCCATTGT GKCTGTACCCCCATTGTAT ATSSYCCATTGTGKCTGTA Direction: Backward Position #: 3 Overlap #: 10 Alignment: -------GGTCCATTGT-- GKCTGTACCCCCATTGTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 322 Original Motif Reverse Complement ATSSYCCATTGTGKCTGTA GCAWSTGCAAAGGCCCT GMWBSTSCAWWGKSYCTGTA Direction: Forward Position #: 2 Overlap #: 16 Alignment: -ATSSYCCATTGTGKCTGTA GCAWSTGCAAAGGCCCT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 284 Combined Motif Reverse Complement Original Motif TACAGKSRCWWTGSASVWYC CATTTGGGAGCCCATTGA TACAGKSRCATTKGRSADCCCATTGA Direction: Forward Position #: 9 Overlap #: 12 Alignment: TACAGKSRCWWTGSASVWYC------ --------CATTTGGGAGCCCATTGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 36 Combined Motif Reverse Complement Reverse Complement TCAATGGGHTSKCYAATGKSYCTGTA CGCCCATCGTCTGGGATGT TCAATGGGHTSCSCMMWKYGTCTGKRATGT Direction: Forward Position #: 12 Overlap #: 15 Alignment: TCAATGGGHTSKCYAATGKSYCTGTA---- -----------CGCCCATCGTCTGGGATGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 147 Combined Motif Reverse Complement Reverse Complement ACATMYCAGACKRWRRGSGSADCCCATTGA TCAATGGTGCCCAG ACATMYCAGACKRTSARYGGWGCCCAKTGA Direction: Forward Position #: 14 Overlap #: 14 Alignment: ACATMYCAGACKRWRRGSGSADCCCATTGA -------------TCAATGGTGCCCAG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 21 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 21 Motif 195 Reverse Complement Original Motif KACGGGCTTAARAAACGGC TAAAAGACTACAWATTGGGT TAMRRGMYTAMAAAWHGGST Direction: Forward Position #: 1 Overlap #: 19 Alignment: KACGGGCTTAARAAACGGC- TAAAAGACTACAWATTGGGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 139 Combined Motif Reverse Complement Original Motif ASCCDWTTTRTAMRCKKYTA AGCCYCTGGYAACCAYYAWT ASCCDWTTWGYMMVYGGYWACCAYYAWT Direction: Forward Position #: 9 Overlap #: 12 Alignment: ASCCDWTTTRTAMRCKKYTA-------- --------AGCCYCTGGYAACCAYYAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 194 Combined Motif Reverse Complement Reverse Complement AWTKKTGGTWMCCMVRYMCWAAWHGGST CAGCTACTCKTATACCCTTG AWTKKTGGTWMCCAGVTACTMATAKRCYCTTG Direction: Forward Position #: 13 Overlap #: 16 Alignment: AWTKKTGGTWMCCMVRYMCWAAWHGGST---- ------------CAGCTACTCKTATACCCTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 100 Combined Motif Original Motif Original Motif AWTKKTGGTWMCCAGVTACTMATAKRCYCTTG GCTGGCCCGCAAGCGCCGCG AWTKKTGGTWMCCAGCTRSYCHKMDASCSYYGCG Direction: Forward Position #: 15 Overlap #: 18 Alignment: AWTKKTGGTWMCCAGVTACTMATAKRCYCTTG-- --------------GCTGGCCCGCAAGCGCCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 242 Combined Motif Original Motif Original Motif AWTKKTGGTWMCCAGCTRSYCHKMDASCSYYGCG AACCCTATTGTGAACTGYG AWTKKTGGTWMCCAGMWCCCYATYGWGMACTGCG Direction: Forward Position #: 16 Overlap #: 19 Alignment: AWTKKTGGTWMCCAGCTRSYCHKMDASCSYYGCG ---------------AACCCTATTGTGAACTGYG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 22 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 22 Motif 36 Original Motif Original Motif ATCTCAGACKRY ACATCCCAGACGATGGGCG GGGCGATCYCAGACKATAC Direction: Backward Position #: 6 Overlap #: 12 Alignment: --ATCTCAGACKRY----- ACATCCCAGACGATGGGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 261 Combined Motif Original Motif Original Motif GGGCGATCYCAGACKATAC ATCTCASAAATCACCACTA GGGCGATMTCWSACRAWWCACCACTA Direction: Forward Position #: 8 Overlap #: 12 Alignment: GGGCGATCYCAGACKATAC------- -------ATCTCASAAATCACCACTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 27 Combined Motif Original Motif Original Motif GGGCGATMTCWSACRAWWCACCACTA CACTTCCCAGACGGGGCG GGGCGATMTCWCACWWCHCASMMSKRGCG Direction: Forward Position #: 12 Overlap #: 15 Alignment: GGGCGATMTCWSACRAWWCACCACTA--- -----------CACTTCCCAGACGGGGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 310 Combined Motif Reverse Complement Reverse Complement CGCMYSYRSTGHGWWGTGWGARATCGCCC GGATTTMKGACTTGCATGGG CGCMYSYRSTGHGRAKTKHGRAMTYGCMYGGG Direction: Forward Position #: 13 Overlap #: 17 Alignment: CGCMYSYRSTGHGWWGTGWGARATCGCCC--- ------------GGATTTMKGACTTGCATGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 227 Combined Motif Original Motif Reverse Complement CGCMYSYRSTGHGRAKTKHGRAMTYGCMYGGG ATTCAASATGAGATTTGGG CGCMYSYRSTGHGRATTBARGAHKWGMHTKGGG Direction: Forward Position #: 15 Overlap #: 18 Alignment: CGCMYSYRSTGHGRAKTKHGRAMTYGCMYGGG- --------------ATTCAASATGAGATTTGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 23 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 23 Motif 48 Reverse Complement Original Motif ACTCCCTAGTGAGATGAACC AGCTCCCAGCGTGAGCGACG ASYYCCYAGYGWGAKSRACS Direction: Backward Position #: 1 Overlap #: 20 Alignment: ACTCCCTAGTGAGATGAACC AGCTCCCAGCGTGAGCGACG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 331 Combined Motif Original Motif Reverse Complement ASYYCCYAGYGWGAKSRACS GCCTCCTTGAGCTGTGGTGG ASYYCCYAGCSTSMTTGASCTGTGGTGG Direction: Forward Position #: 9 Overlap #: 12 Alignment: ASYYCCYAGYGWGAKSRACS-------- --------GCCTCCTTGAGCTGTGGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 321 Combined Motif Original Motif Original Motif ASYYCCYAGCSTSMTTGASCTGTGGTGG AAGCTCGAACTGGGTGGAGC ASYYCCYAGCSTAAKYKMGMWSTGGKKGGAGC Direction: Forward Position #: 13 Overlap #: 16 Alignment: ASYYCCYAGCSTSMTTGASCTGTGGTGG---- ------------AAGCTCGAACTGGGTGGAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Original Motif ASYYCCYAGCSTAAKYKMGMWSTGGKKGGAGC GCTGGAGTGCAGTGGCRYGA ASYYCCYAGCSTAAGCTRGADBKSRGTGGMGCGA Direction: Forward Position #: 15 Overlap #: 18 Alignment: ASYYCCYAGCSTAAKYKMGMWSTGGKKGGAGC-- --------------GCTGGAGTGCAGTGGCRYGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 176 Combined Motif Reverse Complement Original Motif TCGCYCCACMSYVHTCMAGCTTASGCTKGGMKST AGGCCCCAGTGTSTGTTGTT TCGCYCCACMSYVHTMGRSCYYAGKSTGKGHTGTT Direction: Forward Position #: 16 Overlap #: 19 Alignment: TCGCYCCACMSYVHTCMAGCTTASGCTKGGMKST- ---------------AGGCCCCAGTGTSTGTTGTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 24 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 24 Motif 274 Original Motif Original Motif CKAGTCAAAGAAA CTGGTCAAGGAAA CTRGTCAARGAAA Direction: Forward Position #: 1 Overlap #: 13 Alignment: CKAGTCAAAGAAA CTGGTCAAGGAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 23 Original Motif Reverse Complement CTRGTCAARGAAA ACTCCCTAGTGAGATGAACC ACTCCCTAGTSARAKRAACC Direction: Forward Position #: 6 Overlap #: 13 Alignment: -----CTRGTCAARGAAA-- ACTCCCTAGTGAGATGAACC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 129 Combined Motif Original Motif Original Motif ACTCCCTAGTSARAKRAACC AAGAGGTTTAATTGRCTCA ACTCCCTARWGAGRTKWAMYTGRCTCA Direction: Forward Position #: 9 Overlap #: 12 Alignment: ACTCCCTAGTSARAKRAACC------- --------AAGAGGTTTAATTGRCTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 145 Combined Motif Reverse Complement Reverse Complement TGAGKCAKRTWRAMCTCWKTAGGGAGT TYTGTCMTTTTGTGACTGGC TGAGKCAKRTWWHYSTCHTTDKGKRRYTGGC Direction: Forward Position #: 12 Overlap #: 16 Alignment: TGAGKCAKRTWRAMCTCWKTAGGGAGT---- -----------TYTGTCMTTTTGTGACTGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 148 Combined Motif Original Motif Reverse Complement TGAGKCAKRTWWHYSTCHTTDKGKRRYTGGC CTTCGCTGACTCTCTTT TGAGKCAKRTWWHCTTCDYTGRSTVTCTKKC Direction: Forward Position #: 14 Overlap #: 17 Alignment: TGAGKCAKRTWWHYSTCHTTDKGKRRYTGGC -------------CTTCGCTGACTCTCTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 25 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 25 Motif 179 Original Motif Reverse Complement CATTTCCAWCTGAGGTAC GAATACCTCCTGAAGGACCT CTSAWTWCCWYCTGARGKAC Direction: Backward Position #: 3 Overlap #: 18 Alignment: CATTTCCAWCTGAGGTAC-- GAATACCTCCTGAAGGACCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 332 Combined Motif Reverse Complement Reverse Complement GTRCKTCAGKWGGWAWTSAG GTTTAACCATTGAGGGCCAG GTRCKTCAGTTKRAMMWKWGAGGGCCAG Direction: Forward Position #: 9 Overlap #: 12 Alignment: GTRCKTCAGKWGGWAWTSAG-------- --------GTTTAACCATTGAGGGCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 122 Combined Motif Reverse Complement Reverse Complement CTGGCCCTCWRWYYTKRAACTGARGKAC CTTTCTGGGCTGGCCAAGG CTGGCCCTCWRWCTTTMWRSKSWGGYMMAGG Direction: Forward Position #: 13 Overlap #: 16 Alignment: CTGGCCCTCWRWYYTKRAACTGARGKAC--- ------------CTTTCTGGGCTGGCCAAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 68 Combined Motif Original Motif Reverse Complement CTGGCCCTCWRWCTTTMWRSKSWGGYMMAGG GACCTGCAGCCCGCCATG CTGGCCCTCWRWCKWYCTGCRGHSSGCCAKG Direction: Forward Position #: 14 Overlap #: 18 Alignment: CTGGCCCTCWRWCTTTMWRSKSWGGYMMAGG -------------GACCTGCAGCCCGCCATG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 331 Combined Motif Original Motif Original Motif CTGGCCCTCWRWCKWYCTGCRGHSSGCCAKG CCACCACAGCTCAAGGAGGC CTGGCCCTCWRWCCMHCYRCAGCBCRMSRAGGC Direction: Forward Position #: 14 Overlap #: 18 Alignment: CTGGCCCTCWRWCKWYCTGCRGHSSGCCAKG-- -------------CCACCACAGCTCAAGGAGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 26 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Motif 67 Original Motif Reverse Complement CTCCTGCCTCAGCCTCCCRA CACCAGACTCAGGAGCCCAG CWCCWGMCTCAGSMKCCCAR Direction: Backward Position #: 1 Overlap #: 20 Alignment: CTCCTGCCTCAGCCTCCCRA CACCAGACTCAGGAGCCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 104 Combined Motif Original Motif Original Motif CWCCWGMCTCAGSMKCCCAR CAACATGGATGRARCTGGAG CWCCWGMCYMASVWGSMYRRARCTGGAG Direction: Forward Position #: 9 Overlap #: 12 Alignment: CWCCWGMCTCAGSMKCCCAR-------- --------CAACATGGATGRARCTGGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 29 Combined Motif Original Motif Original Motif CWCCWGMCYMASVWGSMYRRARCTGGAG CTGGGCRACAGAGYRAGACY CWCCWGMCYMASCTGGVYRAMASWGSARGACY Direction: Forward Position #: 13 Overlap #: 16 Alignment: CWCCWGMCYMASVWGSMYRRARCTGGAG---- ------------CTGGGCRACAGAGYRAGACY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 64 Combined Motif Original Motif Reverse Complement CWCCWGMCYMASCTGGVYRAMASWGSARGACY KCCGGGCCTTAGCTGCCTTC CWCCWGMCYMASCTGSCBGRCMTTRGMWGMCTTC Direction: Forward Position #: 15 Overlap #: 18 Alignment: CWCCWGMCYMASCTGGVYRAMASWGSARGACY-- --------------KCCGGGCCTTAGCTGCCTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 109 Combined Motif Original Motif Reverse Complement CWCCWGMCYMASCTGSCBGRCMTTRGMWGMCTTC TCTCTCTCTCTCTCTCTCTC CWCCWGMCYMASCTGBCKVKCHYTVKCTSHCTYYC Direction: Forward Position #: 16 Overlap #: 19 Alignment: CWCCWGMCYMASCTGSCBGRCMTTRGMWGMCTTC- ---------------TCTCTCTCTCTCTCTCTCTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 27 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 27 Motif 45 Original Motif Reverse Complement CACTTCCCAGACGGGGCG CACTTTCCAGACTGGGCA CACTTYCCAGACKGGGCR Direction: Forward Position #: 1 Overlap #: 18 Alignment: CACTTCCCAGACGGGGCG CACTTTCCAGACTGGGCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 155 Reverse Complement Reverse Complement KGCCCRGTCTGGKAAGTG GCCKCCCCGTCCGGGAGGGA GCCKCCCCKKCCSGGWSKGRKAAGTG Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------KGCCCRGTCTGGKAAGTG GCCKCCCCGTCCGGGAGGGA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 260 Combined Motif Original Motif Reverse Complement GCCKCCCCKKCCSGGWSKGRKAAGTG TTMGTCCCAGAGGGGCACC GCCKCCCCKKCYTVGTCBSAGARGKGCACC Direction: Forward Position #: 12 Overlap #: 15 Alignment: GCCKCCCCKKCCSGGWSKGRKAAGTG---- -----------TTMGTCCCAGAGGGGCACC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 144 Combined Motif Reverse Complement Original Motif GGTGCRCMTCTSBGACVAMGRYGGGGYGGC CCGCTGCACTGTGGGAGCCC GGTGCRCMTCTSBSMSCWVSACKGKGSGRSCCC Direction: Forward Position #: 14 Overlap #: 17 Alignment: GGTGCRCMTCTSBGACVAMGRYGGGGYGGC--- -------------CCGCTGCACTGTGGGAGCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 176 Combined Motif Reverse Complement Reverse Complement GGGSMCSCRCRGTSVWGSRSBSAGARGKGCACC AACAACASACACTGGGGCCT GGGSMCSCRCRGTSAASAASASASAVKKGSRCCT Direction: Forward Position #: 15 Overlap #: 19 Alignment: GGGSMCSCRCRGTSVWGSRSBSAGARGKGCACC- --------------AACAACASACACTGGGGCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 28 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 28 Motif 193 Reverse Complement Original Motif AATGGGGTGAC ATACAATGGGGGTACAGRC ATACAATGGGGKKACAGRC Direction: Forward Position #: 5 Overlap #: 11 Alignment: ----AATGGGGTGAC---- ATACAATGGGGGTACAGRC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 14 Reverse Complement Reverse Complement GKCTGTYRCCCCATTGTAT AGTGACCCGATTTTCCAGGT AGTGACCCGWYTKTCMMSSYATTGTAT Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------GKCTGTYRCCCCATTGTAT AGTGACCCGATTTTCCAGGT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 232 Combined Motif Original Motif Reverse Complement AGTGACCCGWYTKTCMMSSYATTGTAT AAGTCTCCCAATTACAACT AGTGACCCGWYWWKYCWCCCAWTKWMWACT Direction: Forward Position #: 12 Overlap #: 16 Alignment: AGTGACCCGWYTKTCMMSSYATTGTAT--- -----------AAGTCTCCCAATTACAACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 284 Combined Motif Original Motif Reverse Complement AGTGACCCGWYWWKYCWCCCAWTKWMWACT TCAATGGGCTCCCAAATG AGTGACCCGWYWWTCMAYSBRHTBHCAAMTG Direction: Forward Position #: 14 Overlap #: 17 Alignment: AGTGACCCGWYWWKYCWCCCAWTKWMWACT- -------------TCAATGGGCTCCCAAATG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 155 Combined Motif Original Motif Reverse Complement AGTGACCCGWYWWTCMAYSBRHTBHCAAMTG GCCKCCCCGTCCGGGAGGGA AGTGACCCGWYWWKCCDCCCVBTCCSRRAKGGA Direction: Forward Position #: 14 Overlap #: 18 Alignment: AGTGACCCGWYWWTCMAYSBRHTBHCAAMTG-- -------------GCCKCCCCGTCCGGGAGGGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 29 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 29 Motif 109 Reverse Complement Reverse Complement MGTCTMKCTCTGTKGCCCAG TCTCTCTCTCTCTCTCTCTC HSTCTCKCTCTSTBKCYCWS Direction: Backward Position #: 1 Overlap #: 20 Alignment: MGTCTMKCTCTGTKGCCCAG TCTCTCTCTCTCTCTCTCTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 67 Combined Motif Original Motif Reverse Complement HSTCTCKCTCTSTBKCYCWS CACCAGACTCAGGAGCCCAG HSTCTCKCYMYCWGACTCAGGAGCCCAG Direction: Forward Position #: 9 Overlap #: 12 Alignment: HSTCTCKCTCTSTBKCYCWS-------- --------CACCAGACTCAGGAGCCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 84 Combined Motif Reverse Complement Reverse Complement CTGGGCTCCTGAGTCWGKYKGRGAGASH GGCACTGCTGGGGGACCCAG CTGGGCTCCTGAGGCASTKCKGGRGRACCCAG Direction: Forward Position #: 13 Overlap #: 16 Alignment: CTGGGCTCCTGAGTCWGKYKGRGAGASH---- ------------GGCACTGCTGGGGGACCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Original Motif Reverse Complement CTGGGCTCCTGAGGCASTKCKGGRGRACCCAG TMGGGAGGCTGAGGCAGGAG CTGGGCTCCTGAGGYASKGHGGSKGARBCMRGAG Direction: Forward Position #: 15 Overlap #: 18 Alignment: CTGGGCTCCTGAGGCASTKCKGGRGRACCCAG-- --------------TMGGGAGGCTGAGGCAGGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 144 Combined Motif Original Motif Reverse Complement CTGGGCTCCTGAGGYASKGHGGSKGARBCMRGAG GGGCTCCCACAGTGCAGCGG CTGGGCTCCTGAGGYRGGSTSSCASAGTSCAGMGG Direction: Forward Position #: 16 Overlap #: 19 Alignment: CTGGGCTCCTGAGGYASKGHGGSKGARBCMRGAG- ---------------GGGCTCCCACAGTGCAGCGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 30 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 30 Motif 43 Original Motif Reverse Complement AGGAGCGCCTCTKCCCGGC AGGAGRCMCTCTGCCTGGC AGGAGVSCCTCTGCCYGGC Direction: Backward Position #: 1 Overlap #: 19 Alignment: AGGAGCGCCTCTKCCCGGC AGGAGRCMCTCTGCCTGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 Combined Motif Original Motif Reverse Complement AGGAGVSCCTCTGCCYGGC MCCYGGCWSMGASGSTCCT AGGAGVSMCYCKGCYBRGMSGSTCCT Direction: Forward Position #: 8 Overlap #: 12 Alignment: AGGAGVSCCTCTGCCYGGC------- -------MCCYGGCWSMGASGSTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 56 Combined Motif Reverse Complement Reverse Complement AGGASCSRCMBKGCYGMGRSVCTCCT GCCKGGMKCMGTGGCTCAKG AGGASCSRCMBGSCBGVSGCVSTSSYTCAKG Direction: Forward Position #: 12 Overlap #: 15 Alignment: AGGASCSRCMBKGCYGMGRSVCTCCT----- -----------GCCKGGMKCMGTGGCTCAKG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 62 Combined Motif Reverse Complement Original Motif CRTGAMSSASBGCSVCVGSCBRGMSGSTCCT AGGAACAGCTCCRGTCTAC CRTGAMSSASBGCAGSARCMGCKCSGGTCYWC Direction: Forward Position #: 14 Overlap #: 18 Alignment: CRTGAMSSASBGCSVCVGSCBRGMSGSTCCT- -------------AGGAACAGCTCCRGTCTAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 312 Combined Motif Original Motif Original Motif CRTGAMSSASBGCAGSARCMGCKCSGGTCYWC AGGACTGAGGGTGCCYRGGG CRTGAMSSASBGCARGRACTGMGSGKGYCYRSGG Direction: Forward Position #: 15 Overlap #: 18 Alignment: CRTGAMSSASBGCAGSARCMGCKCSGGTCYWC-- --------------AGGACTGAGGGTGCCYRGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 31 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 31 Motif 299 Reverse Complement Reverse Complement CGGCTCGCGCACGG TTGGAGGTTCTAGCAGGG MGGYTCKMGCASGGTTGG Direction: Backward Position #: 1 Overlap #: 14 Alignment: ----CGGCTCGCGCACGG TTGGAGGTTCTAGCAGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 48 Reverse Complement Original Motif CCAACCSTGCYRGAKCCY AGCTCCCAGCGTGAGCGACG AGCTCCCASCRWSMGYGMYRGAKCCY Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------CCAACCSTGCYRGAKCCY AGCTCCCAGCGTGAGCGACG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 64 Combined Motif Original Motif Reverse Complement AGCTCCCASCRWSMGYGMYRGAKCCY KCCGGGCCTTAGCTGCCTTC AGCTCCCASCRDCCGKGCCKKAGCYKCCTTC Direction: Forward Position #: 12 Overlap #: 15 Alignment: AGCTCCCASCRWSMGYGMYRGAKCCY----- -----------KCCGGGCCTTAGCTGCCTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 164 Combined Motif Original Motif Original Motif AGCTCCCASCRDCCGKGCCKKAGCYKCCTTC AGCCCCGGTTCCCGCYCGC AGCTCCCASCRDCAGCSCCGGWKCCCSCTYSC Direction: Forward Position #: 14 Overlap #: 18 Alignment: AGCTCCCASCRDCCGKGCCKKAGCYKCCTTC- -------------AGCCCCGGTTCCCGCYCGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 96 Combined Motif Reverse Complement Original Motif GSMAGSGGGRWCCGGSGCTGDKGSTGGGAGCT AAGCTGAGGGAGCCGGCTCC GSMAGSGGGRWCCGRRGCTGAGGGWGSSRGCTCC Direction: Forward Position #: 15 Overlap #: 18 Alignment: GSMAGSGGGRWCCGGSGCTGDKGSTGGGAGCT-- --------------AAGCTGAGGGAGCCGGCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 32 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 32 Motif 61 Reverse Complement Reverse Complement GGGTTTCACCAT TGGCTTCACCCAGTGGATCC GTGGATCCKGGYTTCACCMW Direction: Backward Position #: 9 Overlap #: 12 Alignment: GGGTTTCACCAT-------- TGGCTTCACCCAGTGGATCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 204 Combined Motif Reverse Complement Original Motif WYGGTGAAMCCRGGATCCAC AGAGYRAGACTCC WYGGTGAAASMGSGAKMCWCC Direction: Forward Position #: 9 Overlap #: 12 Alignment: WYGGTGAAMCCRGGATCCAC- --------AGAGYRAGACTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 253 Combined Motif Original Motif Reverse Complement WYGGTGAAASMGSGAKMCWCC ACAGAGTGAGACTCT WYGGTGAAACAGAGWKASACYCT Direction: Forward Position #: 9 Overlap #: 13 Alignment: WYGGTGAAASMGSGAKMCWCC-- --------ACAGAGTGAGACTCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 310 Combined Motif Reverse Complement Reverse Complement AGKGTSTYWCTCTGTTTCACCMW GGATTTMKGACTTGCATGGG AGKGTSTYWSGMTKTYTSACYWDCATGGG Direction: Forward Position #: 10 Overlap #: 14 Alignment: AGKGTSTYWCTCTGTTTCACCMW------ ---------GGATTTMKGACTTGCATGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Reverse Complement Original Motif CCCATGHWMGTSAMARARCSWKASACYCT GAAAGGGAACTCCCTGACCC CCCATGHWMGTSRAAARGSAABWCMCTSWCCC Direction: Forward Position #: 13 Overlap #: 17 Alignment: CCCATGHWMGTSAMARARCSWKASACYCT--- ------------GAAAGGGAACTCCCTGACCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 33 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 33 Motif 291 Reverse Complement Original Motif GAGACTCCGTGGGCGT CTGAGGACCTGAGGTCRTA AGAGRMYCYGWGGKCGTCT Direction: Backward Position #: 2 Overlap #: 16 Alignment: --GAGACTCCGTGGGCGT- CTGAGGACCTGAGGTCRTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 159 Combined Motif Reverse Complement Reverse Complement AGACGRCCWCKGKYMCTCT TGCTCACACAAAGCCTGT AGACGRCYDCTSDCACWMWGCCTGT Direction: Forward Position #: 8 Overlap #: 12 Alignment: AGACGRCCWCKGKYMCTCT------ -------TGCTCACACAAAGCCTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 144 Combined Motif Original Motif Reverse Complement AGACGRCYDCTSDCACWMWGCCTGT GGGCTCCCACAGTGCAGCGG AGACGRCYDCKGGCWCHCASMSTGYAGCGG Direction: Forward Position #: 11 Overlap #: 15 Alignment: AGACGRCYDCTSDCACWMWGCCTGT----- ----------GGGCTCCCACAGTGCAGCGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 Combined Motif Original Motif Reverse Complement AGACGRCYDCKGGCWCHCASMSTGYAGCGG MCCYGGCWSMGASGSTCCT AGACGRCYDCKGGCCCYSRCHSWGHRGCKSCT Direction: Forward Position #: 14 Overlap #: 17 Alignment: AGACGRCYDCKGGCWCHCASMSTGYAGCGG-- -------------MCCYGGCWSMGASGSTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 67 Combined Motif Original Motif Reverse Complement AGACGRCYDCKGGCCCYSRCHSWGHRGCKSCT CACCAGACTCAGGAGCCCAG AGACGRCYDCKGGCCMCCASACTSAGGMGCCYAG Direction: Forward Position #: 15 Overlap #: 18 Alignment: AGACGRCYDCKGGCCCYSRCHSWGHRGCKSCT-- --------------CACCAGACTCAGGAGCCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 34 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 34 Motif 314 Reverse Complement Reverse Complement TGTGCGTCC ATGTGCGTTCC CTGTGCGTYCA Direction: Backward Position #: 2 Overlap #: 9 Alignment: -TGTGCGTCC- ATGTGCGTTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 87 Original Motif Original Motif CTGTGCGTYCA CATGTGTGTCC CWKKKSKKTCM Direction: Forward Position #: 1 Overlap #: 11 Alignment: CTGTGCGTYCA CATGTGTGTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 206 Original Motif Original Motif CWKKKSKKTCM GCTCCWGTGYGKCC GCTCCWGKGBGKYCM Direction: Forward Position #: 5 Overlap #: 10 Alignment: ----CWKKKSKKTCM GCTCCWGTGYGKCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 215 Combined Motif Original Motif Reverse Complement GCTCCWGKGBGKYCM GGGRSCACAGGAGCD GCTCCDGKRSSRCMSGAGCD Direction: Forward Position #: 6 Overlap #: 10 Alignment: GCTCCWGKGBGKYCM----- -----GGGRSCACAGGAGCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 120 Combined Motif Original Motif Reverse Complement GCTCCDGKRSSRCMSGAGCD GGGASCACATGG GCTCCDGKGGGACCASAKSG Direction: Forward Position #: 9 Overlap #: 12 Alignment: GCTCCDGKRSSRCMSGAGCD --------GGGASCACATGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 35 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 35 Motif 85 Reverse Complement Reverse Complement AAGACGGGTGATTTCTG TGGAGAACCTTTATGTCTAG TGRAGAMSSKTKATKTCTRG Direction: Forward Position #: 3 Overlap #: 17 Alignment: --AAGACGGGTGATTTCTG- TGGAGAACCTTTATGTCTAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 191 Combined Motif Original Motif Reverse Complement TGRAGAMSSKTKATKTCTRG GCTGCARTCTCGGCACTTT TGRAGAMSGYTGMWDTCTVGGCACTTT Direction: Forward Position #: 9 Overlap #: 12 Alignment: TGRAGAMSSKTKATKTCTRG------- --------GCTGCARTCTCGGCACTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 62 Combined Motif Original Motif Reverse Complement TGRAGAMSGYTGMWDTCTVGGCACTTT GTAGACKGGAGCTGTTCCT TGRAGAMSGYTGHAGWCTGGRSMYKTTCCT Direction: Forward Position #: 12 Overlap #: 16 Alignment: TGRAGAMSGYTGMWDTCTVGGCACTTT--- -----------GTAGACKGGAGCTGTTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 13 Combined Motif Original Motif Original Motif TGRAGAMSGYTGHAGWCTGGRSMYKTTCCT AAGCAGGGCGAGGCATTGCC TGRAGAMSGYTGHARDCWGGGCVHGKYMYTGCC Direction: Forward Position #: 14 Overlap #: 17 Alignment: TGRAGAMSGYTGHAGWCTGGRSMYKTTCCT--- -------------AAGCAGGGCGAGGCATTGCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 235 Combined Motif Reverse Complement Reverse Complement GGCAKYMRCHVGCCCWGHKTHCAKCSYTCTKCA GCCAATTTCTCCCATTTGGA GGCAKYMRCHVGCCSHSAWTTYMTCCCWYTTSRA Direction: Forward Position #: 15 Overlap #: 19 Alignment: GGCAKYMRCHVGCCCWGHKTHCAKCSYTCTKCA- --------------GCCAATTTCTCCCATTTGGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 36 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 36 Motif 155 Reverse Complement Reverse Complement CGCCCATCGTCTGGGATGT GCCKCCCCGTCCGGGAGGGA SSCSCMYCGTCYGGGAKGKA Direction: Forward Position #: 1 Overlap #: 19 Alignment: CGCCCATCGTCTGGGATGT- GCCKCCCCGTCCGGGAGGGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 176 Combined Motif Reverse Complement Original Motif TRCYTCCCMGACGMYGSGSS AGGCCCCAGTGTSTGTTGTT TRCYTCCCAGRCSCYRGKGBSTGTTGTT Direction: Forward Position #: 9 Overlap #: 12 Alignment: TRCYTCCCMGACGMYGSGSS-------- --------AGGCCCCAGTGTSTGTTGTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 294 Combined Motif Reverse Complement Original Motif AACAACASVCYCMKGSGKCTGGGAKGKA AGCTGTGAGAAGAGGGCCAC AACAACASVCYCAGSTGTSWGRRRRGGRCCAC Direction: Forward Position #: 13 Overlap #: 16 Alignment: AACAACASVCYCMKGSGKCTGGGAKGKA---- ------------AGCTGTGAGAAGAGGGCCAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 307 Combined Motif Reverse Complement Reverse Complement GTGGKCCKKKMCWSACASCTGKGBSTGTTGTT AGAGCTCTGGCTGGCATCT GTGGKCCKKKMCWSASAGCTSTGGCTGKYRTYT Direction: Forward Position #: 15 Overlap #: 18 Alignment: GTGGKCCKKKMCWSACASCTGKGBSTGTTGTT- --------------AGAGCTCTGGCTGGCATCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 292 Combined Motif Original Motif Reverse Complement GTGGKCCKKKMCWSASAGCTSTGGCTGKYRTYT TTGTCCCACTGGAAGGTCTT GTGGKCCKKKMCWSWTRKCYCWSKSKRABGTCTT Direction: Forward Position #: 15 Overlap #: 19 Alignment: GTGGKCCKKKMCWSASAGCTSTGGCTGKYRTYT- --------------TTGTCCCACTGGAAGGTCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 37 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 37 Motif 332 Original Motif Reverse Complement CCTTGAGAGCW GTTTAACCATTGAGGGCCAG AGCMTTGAGRGCYGTTTAAC Direction: Backward Position #: 3 Overlap #: 11 Alignment: -------CCTTGAGAGCW-- GTTTAACCATTGAGGGCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 303 Combined Motif Original Motif Reverse Complement AGCMTTGAGRGCYGTTTAAC ACCATCTTTAAGAACT AGCMTTGARVSMYSTTTAASAACT Direction: Forward Position #: 9 Overlap #: 12 Alignment: AGCMTTGAGRGCYGTTTAAC---- --------ACCATCTTTAAGAACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 48 Combined Motif Reverse Complement Reverse Complement AGTTSTTAAASMRSVMTCAAYGCT CGTCGCTCACGCTGGGAGCT AGTTSTTAAACDKCGCTCAMBSYKGGAGCT Direction: Forward Position #: 11 Overlap #: 14 Alignment: AGTTSTTAAASMRSVMTCAAYGCT------ ----------CGTCGCTCACGCTGGGAGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 239 Combined Motif Reverse Complement Reverse Complement AGCTCCRMSBYTGAGCGRHGTTTAASAACT ACAGTTCTGGAGGCT AGCTCCRMSBYTGASMGTTCTKKARGMWCT Direction: Forward Position #: 14 Overlap #: 15 Alignment: AGCTCCRMSBYTGAGCGRHGTTTAASAACT -------------ACAGTTCTGGAGGCT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 331 Combined Motif Reverse Complement Original Motif AGWYCKTRRAGAACYSTCAMBSYKGGAGCT CCACCACAGCTCAAGGAGGC AGWYCKTRRAGAACCAYCACAGCTSRAGSWGGC Direction: Forward Position #: 14 Overlap #: 17 Alignment: AGWYCKTRRAGAACYSTCAMBSYKGGAGCT--- -------------CCACCACAGCTCAAGGAGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 38 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 38 Motif 294 Reverse Complement Reverse Complement TCTMKGCTCACTGC GTGGCCCTCTTCTCACAGCT TYCTCKKCTCACWGCGTGGC Direction: Backward Position #: 2 Overlap #: 14 Alignment: -----TCTMKGCTCACTGC- GTGGCCCTCTTCTCACAGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 64 Combined Motif Reverse Complement Original Motif GCCACGCWGTGAGRRGAGMA GAAGGCAGCTAAGGCCCGGY GCCACGCWGWRRGMAGMKAAGGCCCGGY Direction: Forward Position #: 9 Overlap #: 12 Alignment: GCCACGCWGTGAGRRGAGMA-------- --------GAAGGCAGCTAAGGCCCGGY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 17 Combined Motif Original Motif Original Motif GCCACGCWGWRRGMAGMKAAGGCCCGGY AGACAGTGGGYGCAGGHCA GCCACGCWGWRRRGASAGWRGGCSCRGSHCA Direction: Forward Position #: 13 Overlap #: 16 Alignment: GCCACGCWGWRRGMAGMKAAGGCCCGGY--- ------------AGACAGTGGGYGCAGGHCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 261 Combined Motif Original Motif Reverse Complement GCCACGCWGWRRRGASAGWRGGCSCRGSHCA TAGTGGTGATTTSTGAGAT GCCACGCWGWRRRKAGWGDDGRYBYRKGASAT Direction: Forward Position #: 14 Overlap #: 18 Alignment: GCCACGCWGWRRRGASAGWRGGCSCRGSHCA- -------------TAGTGGTGATTTSTGAGAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 331 Combined Motif Reverse Complement Reverse Complement ATSTCRMMVMKCDHCWCTRMKKWCWGCGTGGC GCCTCCTTGAGCTGTGGTGG ATSTCRMMVMKCDHSCCTMCTTGMRSYGTGGYGG Direction: Forward Position #: 15 Overlap #: 18 Alignment: ATSTCRMMVMKCDHCWCTRMKKWCWGCGTGGC-- --------------GCCTCCTTGAGCTGTGGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 39 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 39 Motif 10 Reverse Complement Original Motif CCTCCCAGCCGCCT AGGASCSTCYSWGCCMGGY MSKMCCVKCYGMSYCMGGY Direction: Forward Position #: 1 Overlap #: 14 Alignment: CCTCCCAGCCGCCT----- AGGASCSTCYSWGCCMGGY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 68 Combined Motif Reverse Complement Original Motif MCCYGMSRCKGYBGGRRSR CATGGCGGGCTGCAGGTC MCCYGMSVMTGGCGGGVBGCAGGTC Direction: Forward Position #: 8 Overlap #: 12 Alignment: MCCYGMSRCKGYBGGRRSR------ -------CATGGCGGGCTGCAGGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 183 Combined Motif Original Motif Original Motif MCCYGMSVMTGGCGGGVBGCAGGTC GCCRGCCCTGCYGGCC MCCYGMSVMTGCCGGSCCKSMBGKCC Direction: Forward Position #: 11 Overlap #: 15 Alignment: MCCYGMSVMTGGCGGGVBGCAGGTC- ----------GCCRGCCCTGCYGGCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 36 Combined Motif Reverse Complement Reverse Complement GGRCBRSRGGSCCGGCAYVSYCMGGY CGCCCATCGTCTGGGATGT GGRCBRSRGGSCSSCCATCGTCWGGKATGT Direction: Forward Position #: 12 Overlap #: 15 Alignment: GGRCBRSRGGSCCGGCAYVSYCMGGY---- -----------CGCCCATCGTCTGGGATGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 27 Combined Motif Original Motif Reverse Complement GGRCBRSRGGSCSSCCATCGTCWGGKATGT CGCCCCGTCTGGGAAGTG GGRCBRSRGGSCSCSCMYCGTCTGGGAWGTG Direction: Forward Position #: 14 Overlap #: 17 Alignment: GGRCBRSRGGSCSSCCATCGTCWGGKATGT- -------------CGCCCCGTCTGGGAAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 40 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 40 Motif 144 Reverse Complement Reverse Complement GCCTCCCAAAGT GGGCTCCCACAGTGCAGCGG GGSCTCCCAMAGTGCAGCGG Direction: Forward Position #: 2 Overlap #: 12 Alignment: -GCCTCCCAAAGT------- GGGCTCCCACAGTGCAGCGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 239 Combined Motif Original Motif Reverse Complement GGSCTCCCAMAGTGCAGCGG ACAGTTCTGGAGGCT GGSCTCCCAMAGTKCWGSRGGCT Direction: Forward Position #: 9 Overlap #: 12 Alignment: GGSCTCCCAMAGTGCAGCGG--- --------ACAGTTCTGGAGGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 61 Combined Motif Original Motif Original Motif GGSCTCCCAMAGTKCWGSRGGCT GGATCCACTGGGTGAAGCCA GGSCTCCCASRRTBCASYRGGYKAAGCCA Direction: Forward Position #: 10 Overlap #: 14 Alignment: GGSCTCCCAMAGTKCWGSRGGCT------ ---------GGATCCACTGGGTGAAGCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 284 Combined Motif Original Motif Reverse Complement GGSCTCCCASRRTBCASYRGGYKAAGCCA TCAATGGGCTCCCAAATG GGSCTCCCASRRTCMABGGGSTBMMRMMWG Direction: Forward Position #: 13 Overlap #: 17 Alignment: GGSCTCCCASRRTBCASYRGGYKAAGCCA- ------------TCAATGGGCTCCCAAATG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 108 Combined Motif Original Motif Original Motif GGSCTCCCASRRTCMABGGGSTBMMRMMWG CGAGCCTCCCCGAYGAGCGC GGSCTCCCASRRTCVAGSSKCYCMVACVAGCGC Direction: Forward Position #: 14 Overlap #: 17 Alignment: GGSCTCCCASRRTCMABGGGSTBMMRMMWG--- -------------CGAGCCTCCCCGAYGAGCGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 41 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 41 Motif 7 Original Motif Original Motif AAAYAAAAAAA GTCTCWAMAAAAAAWAMAAA AAAAAAAAAAAGTCTCWAMA Direction: Backward Position #: 1 Overlap #: 11 Alignment: ---------AAAYAAAAAAA GTCTCWAMAAAAAAWAMAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 54 Combined Motif Reverse Complement Reverse Complement TYTWGAGACTTTTTTTTTTT TTTCTTTTCCTT TYTWGAGAYTTYTTTTHYTT Direction: Forward Position #: 9 Overlap #: 12 Alignment: TYTWGAGACTTTTTTTTTTT --------TTTCTTTTCCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 117 Combined Motif Original Motif Reverse Complement TYTWGAGAYTTYTTTTHYTT TTYTTGTTGTTGTTGTT TYTWGAGATTTTTKTTBTTKTTGTT Direction: Forward Position #: 9 Overlap #: 12 Alignment: TYTWGAGAYTTYTTTTHYTT----- --------TTYTTGTTGTTGTTGTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 106 Combined Motif Original Motif Original Motif TYTWGAGATTTTTKTTBTTKTTGTT ATTGGTGTATTTACAATCCC TYTWGAGATTWTTGKTGTWTTTRYWATCCC Direction: Forward Position #: 11 Overlap #: 15 Alignment: TYTWGAGATTTTTKTTBTTKTTGTT----- ----------ATTGGTGTATTTACAATCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 328 Combined Motif Reverse Complement Original Motif GGGATWKKAAAWACAYCAAWAATCTCWAMA GATACAAAATCAATGTR GGGATWKKAAAWASATMMAAAATCWMWRWA Direction: Forward Position #: 14 Overlap #: 17 Alignment: GGGATWKKAAAWACAYCAAWAATCTCWAMA -------------GATACAAAATCAATGTR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 42 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 42 Motif 149 Reverse Complement Reverse Complement GCGGCCGGGCAGAG GGGTGCAGGMGGGCTGAGT TGCRGSCGGGCWGAGGGGT Direction: Backward Position #: 2 Overlap #: 14 Alignment: ----GCGGCCGGGCAGAG- GGGTGCAGGMGGGCTGAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 307 Combined Motif Reverse Complement Reverse Complement ACCCCTCWGCCCGSCMGCA AGAGCTCTGGCTGGCATCT ACCCCTCAGMSCKCYVGCWGGCATCT Direction: Forward Position #: 8 Overlap #: 12 Alignment: ACCCCTCWGCCCGSCMGCA------- -------AGAGCTCTGGCTGGCATCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 125 Combined Motif Reverse Complement Reverse Complement AGATGCCWGCVKGRGSRCTGAGGGGT GCGGCTGGCCGGGCG AGATGCCWGCVGSGGCKSKSMGGGSK Direction: Forward Position #: 12 Overlap #: 15 Alignment: AGATGCCWGCVKGRGSRCTGAGGGGT -----------GCGGCTGGCCGGGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 52 Combined Motif Reverse Complement Original Motif RSCCCYSYSRGCCSCVGCWGGCATCT GACTGGCAGGCAGCTCCACC RSCCCYSYSRGSMCYGGCAGGCAKCTCCACC Direction: Forward Position #: 12 Overlap #: 15 Alignment: RSCCCYSYSRGCCSCVGCWGGCATCT----- -----------GACTGGCAGGCAGCTCCACC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 285 Combined Motif Reverse Complement Reverse Complement GGTGGAGRTGCCTGCCMGYSCKSKSMGGGSK GCTGGAGTGCAGTG GGTGGAGRTGCCTGCYRGWGYGCAGWGGGSK Direction: Forward Position #: 14 Overlap #: 14 Alignment: GGTGGAGRTGCCTGCCMGYSCKSKSMGGGSK -------------GCTGGAGTGCAGTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 43 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 43 Motif 30 Original Motif Reverse Complement GCCAGGCAGAGRGKCTCCT GCCGGGRAGAGGCGCTCCT GCCRGGMAGAGGSGCTCCT Direction: Backward Position #: 1 Overlap #: 19 Alignment: GCCAGGCAGAGRGKCTCCT GCCGGGRAGAGGCGCTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 Combined Motif Reverse Complement Reverse Complement AGGAGCSCCTCTRCCMGGC MCCYGGCWSMGASGSTCCT AGGAGCSMCYCKGCYCRGMSGSTCCT Direction: Forward Position #: 8 Overlap #: 12 Alignment: AGGAGCSCCTCTRCCMGGC------- -------MCCYGGCWSMGASGSTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 56 Combined Motif Reverse Complement Reverse Complement AGGASCSRCMGKGCYGMGRSGCTCCT GCCKGGMKCMGTGGCTCAKG AGGASCSRCMGGSCBGVSGCVSTSSYTCAKG Direction: Forward Position #: 12 Overlap #: 15 Alignment: AGGASCSRCMGKGCYGMGRSGCTCCT----- -----------GCCKGGMKCMGTGGCTCAKG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 312 Combined Motif Original Motif Original Motif AGGASCSRCMGGSCBGVSGCVSTSSYTCAKG AGGACTGAGGGTGCCYRGGG AGGASCSRCMGGSMGGACKSAGKGTBYCMGGGG Direction: Forward Position #: 14 Overlap #: 18 Alignment: AGGASCSRCMGGSCBGVSGCVSTSSYTCAKG-- -------------AGGACTGAGGGTGCCYRGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 99 Combined Motif Original Motif Reverse Complement AGGASCSRCMGGSMGGACKSAGKGTBYCMGGGG AATGAKATCATGTCYTTTGC AGGASCSRCMGGSMDRDSWGAKBRTGTCHTKKGC Direction: Forward Position #: 15 Overlap #: 19 Alignment: AGGASCSRCMGGSMGGACKSAGKGTBYCMGGGG- --------------AATGAKATCATGTCYTTTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 44 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 44 Motif 16 Original Motif Original Motif AATCGCTTGAACC GAAAGGGAACTCCCTGACCC AATYSCYTGAMCCGAAAGGG Direction: Backward Position #: 1 Overlap #: 13 Alignment: -------AATCGCTTGAACC GAAAGGGAACTCCCTGACCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 178 Combined Motif Original Motif Reverse Complement AATYSCYTGAMCCGAAAGGG ATGTGGAGGTGGAAGACAGT AATYSCYTRWVYSGARRKGGAAGACAGT Direction: Forward Position #: 9 Overlap #: 12 Alignment: AATYSCYTGAMCCGAAAGGG-------- --------ATGTGGAGGTGGAAGACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 129 Combined Motif Reverse Complement Reverse Complement ACTGTCTTCCYKKTCSKVWMAMGSMATT TGAGKCAATTAAACCTCTT ACTGTCTTCCYKTKMGKCAAWHRAAMYTCTT Direction: Forward Position #: 13 Overlap #: 16 Alignment: ACTGTCTTCCYKKTCSKVWMAMGSMATT--- ------------TGAGKCAATTAAACCTCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 333 Combined Motif Original Motif Original Motif ACTGTCTTCCYKTKMGKCAAWHRAAMYTCTT TAGATAATAGCTCCAGCTTT ACTGTCTTCCYKTTAGDYAATAGMWCCWSYTTT Direction: Forward Position #: 14 Overlap #: 18 Alignment: ACTGTCTTCCYKTKMGKCAAWHRAAMYTCTT-- -------------TAGATAATAGCTCCAGCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 23 Combined Motif Original Motif Original Motif ACTGTCTTCCYKTTAGDYAATAGMWCCWSYTTT GGTTCATCTCACTAGGGAGT ACTGTCTTCCYKTTRGTTMATMKCACYAGBKWKT Direction: Forward Position #: 15 Overlap #: 19 Alignment: ACTGTCTTCCYKTTAGDYAATAGMWCCWSYTTT- --------------GGTTCATCTCACTAGGGAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 45 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 45 Motif 27 Original Motif Reverse Complement TGCCCAGTCTGGAAAGTG CGCCCCGTCTGGGAAGTG YGCCCMGTCTGGRAAGTG Direction: Forward Position #: 1 Overlap #: 18 Alignment: TGCCCAGTCTGGAAAGTG CGCCCCGTCTGGGAAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 155 Original Motif Reverse Complement YGCCCMGTCTGGRAAGTG GCCKCCCCGTCCGGGAGGGA GCCKCCCCBKCCSVGWSKGRRAAGTG Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------YGCCCMGTCTGGRAAGTG GCCKCCCCGTCCGGGAGGGA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 292 Combined Motif Original Motif Original Motif GCCKCCCCBKCCSVGWSKGRRAAGTG AAGACCTTCCAGTGGGACAA GCCKCCCCBKCMVGRMCTKVVARKKGGACAA Direction: Forward Position #: 12 Overlap #: 15 Alignment: GCCKCCCCBKCCSVGWSKGRRAAGTG----- -----------AAGACCTTCCAGTGGGACAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 176 Combined Motif Reverse Complement Original Motif TTGTCCRYKTVVRAGRKCBYGRBGGGGYGGC AGGCCCCAGTGTSTGTTGTT TTGTCCRYKTVVRAGGBCCYRGTGKGKBKKSTT Direction: Forward Position #: 14 Overlap #: 18 Alignment: TTGTCCRYKTVVRAGRKCBYGRBGGGGYGGC-- -------------AGGCCCCAGTGTSTGTTGTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 349 Combined Motif Original Motif Reverse Complement TTGTCCRYKTVVRAGGBCCYRGTGKGKBKKSTT TTCAMTCATGATTTGGCTCT TTGTCCRYKTVVRAKKCMCYSRTGAKTTGGCTYT Direction: Forward Position #: 15 Overlap #: 19 Alignment: TTGTCCRYKTVVRAGGBCCYRGTGKGKBKKSTT- --------------TTCAMTCATGATTTGGCTCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 46 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 46 Motif 78 Original Motif Original Motif CCCCWCCCCCA CGAGCCCTGCCCCGCGG CGASCCCTGCCCCRCGG Direction: Forward Position #: 4 Overlap #: 11 Alignment: ---CCCCWCCCCCA--- CGAGCCCTGCCCCGCGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 221 Combined Motif Reverse Complement Original Motif CCGKGGGGCAGGGSTCG GGGAGGAAGGGGACAC CCGKGGGGGAGGRVKSGGACAC Direction: Forward Position #: 7 Overlap #: 11 Alignment: CCGKGGGGCAGGGSTCG----- ------GGGAGGAAGGGGACAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Reverse Complement Original Motif GTGTCCSRBMCCTCCCCCRCGG CTCCTGCCTCAGCCTCCCRA GTGTCCSRBCYCYYSCCYVMGSCTCCCRA Direction: Forward Position #: 10 Overlap #: 13 Alignment: GTGTCCSRBMCCTCCCCCRCGG------- ---------CTCCTGCCTCAGCCTCCCRA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 53 Combined Motif Original Motif Original Motif GTGTCCSRBCYCYYSCCYVMGSCTCCCRA GTCCCATCGACCACCCAAG GTGTCCSRBCYCGTCCCWTCGRCYMCCCAAG Direction: Forward Position #: 13 Overlap #: 17 Alignment: GTGTCCSRBCYCYYSCCYVMGSCTCCCRA-- ------------GTCCCATCGACCACCCAAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 313 Combined Motif Original Motif Original Motif GTGTCCSRBCYCGTCCCWTCGRCYMCCCAAG CTCCTGCCTCAGCY GTGTCCSRBCYCGYYCCTGCSWCHGCYCAAG Direction: Forward Position #: 14 Overlap #: 14 Alignment: GTGTCCSRBCYCGTCCCWTCGRCYMCCCAAG -------------CTCCTGCCTCAGCY---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 47 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 47 Motif 26 Original Motif Original Motif GCCTCAGTTTCCY CTCCTGCCTCAGCCTCCCRA CTCCTGCCTCAGYYTCCYRA Direction: Forward Position #: 6 Overlap #: 13 Alignment: -----GCCTCAGTTTCCY-- CTCCTGCCTCAGCCTCCCRA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 64 Combined Motif Reverse Complement Reverse Complement TMKGGAMMCTGAGGCAGGAG KCCGGGCCTTAGCTGCCTTC TMKGGAMMSYSRGGCMKKAGCTGCCTTC Direction: Forward Position #: 9 Overlap #: 12 Alignment: TMKGGAMMCTGAGGCAGGAG-------- --------KCCGGGCCTTAGCTGCCTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 164 Combined Motif Reverse Complement Original Motif GAAGGCAGCTRRRGCCKSKSYYTCCYRA AGCCCCGGTTCCCGCYCGC GAAGGCAGCTRRRGCCBSGGTTYCCBCHCGC Direction: Forward Position #: 13 Overlap #: 16 Alignment: GAAGGCAGCTRRRGCCKSKSYYTCCYRA--- ------------AGCCCCGGTTCCCGCYCGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 176 Combined Motif Reverse Complement Original Motif GCGHGBGGKAACCSBGGCKKKAGCTGCCTTC AGGCCCCAGTGTSTGTTGTT GCGHGBGGKAACCRGGSCYYDRKSTGYSTTSTT Direction: Forward Position #: 14 Overlap #: 18 Alignment: GCGHGBGGKAACCSBGGCKKKAGCTGCCTTC-- -------------AGGCCCCAGTGTSTGTTGTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 291 Combined Motif Original Motif Reverse Complement GCGHGBGGKAACCRGGSCYYDRKSTGYSTTSTT TAMGACCTCAGGTCCTCAG GCGHGBGGKAACCRKRCSHCVDBMKGTCYTCWK Direction: Forward Position #: 15 Overlap #: 19 Alignment: GCGHGBGGKAACCRGGSCYYDRKSTGYSTTSTT --------------TAMGACCTCAGGTCCTCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 48 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 48 Motif 176 Original Motif Original Motif AGCTCCCAGCGTGAGCGACG AGGCCCCAGTGTSTGTTGTT AGSYCCCAGYGTGWGYKRYK Direction: Forward Position #: 1 Overlap #: 20 Alignment: AGCTCCCAGCGTGAGCGACG AGGCCCCAGTGTSTGTTGTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 312 Combined Motif Reverse Complement Reverse Complement RMKRMCWCACMCTGGGMSCT CCCMKGGCACCCTCAGTCCT RMKRMCWCMCCCKGGSACCYTCAGTCCT Direction: Forward Position #: 9 Overlap #: 12 Alignment: RMKRMCWCACMCTGGGMSCT-------- --------CCCMKGGCACCCTCAGTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 23 Combined Motif Original Motif Original Motif RMKRMCWCMCCCKGGSACCYTCAGTCCT GGTTCATCTCACTAGGGAGT RMKRMCWCMCCCGGKTMMYCTCASTMSKGAGT Direction: Forward Position #: 13 Overlap #: 16 Alignment: RMKRMCWCMCCCKGGSACCYTCAGTCCT---- ------------GGTTCATCTCACTAGGGAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Reverse Complement Reverse Complement ACTCRSRASTGAGMYRARCCGGGYGWGYKRYK ARCTCCTGKSCTCAAGKGAT ACTCRSRASTGAGMHRMDCCKGGBSTSADGTKAT Direction: Forward Position #: 15 Overlap #: 18 Alignment: ACTCRSRASTGAGMYRARCCGGGYGWGYKRYK-- --------------ARCTCCTGKSCTCAAGKGAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 119 Combined Motif Reverse Complement Reverse Complement ATYACDTSASBCCYGGDRMHYCTCASTMSKGAGT KKCACCTTGATCTTGGACTT ATYACDTSASBCCYGGDVMCCYTSABYHBKGASTT Direction: Forward Position #: 16 Overlap #: 19 Alignment: ATYACDTSASBCCYGGDRMHYCTCASTMSKGAGT- ---------------KKCACCTTGATCTTGGACTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 49 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Motif 1 Reverse Complement Original Motif GGRRMCAGATGT GGGGTGACAGABGB GGGGWSASAKRTGB Direction: Forward Position #: 1 Overlap #: 12 Alignment: GGRRMCAGATGT-- GGGGTGACAGABGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 199 Combined Motif Reverse Complement Reverse Complement BCAMRTSTSWCCCC GGTGCCAGCTGT BCAMRKGTGMCMSCTGT Direction: Forward Position #: 6 Overlap #: 9 Alignment: BCAMRTSTSWCCCC--- -----GGTGCCAGCTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 120 Combined Motif Reverse Complement Reverse Complement ACAGSYGRCACYKRTGB GGGASCACATGG ACAGSYGGSASCDSWKGG Direction: Forward Position #: 7 Overlap #: 11 Alignment: ACAGSYGRCACYKRTGB- ------GGGASCACATGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 225 Original Motif Original Motif ACAGSYGGSASCDSWKGG GCACATGTAYCCYAGAACTT GCACATGTACMSBHGRAMYYDSWKGG Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------ACAGSYGGSASCDSWKGG GCACATGTAYCCYAGAACTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 257 Combined Motif Reverse Complement Reverse Complement CCRWSDMMYTKCHBSYGTACATGTGC TGTCCATGTGTTCTC CCRWSDMMYTKYGTCCRTRYRTKYKC Direction: Forward Position #: 12 Overlap #: 15 Alignment: CCRWSDMMYTKCHBSYGTACATGTGC -----------TGTCCATGTGTTCTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 50 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 50 Motif 277 Original Motif Reverse Complement GATGTGAGGGC GCTTCTGGTGAGGGC GCTTSWKGTGAGGGC Direction: Forward Position #: 5 Overlap #: 11 Alignment: ----GATGTGAGGGC GCTTCTGGTGAGGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 283 Combined Motif Original Motif Reverse Complement GCTTSWKGTGAGGGC GGATGGTGAGGGC GCTTSDGRTGRKGRSGGC Direction: Forward Position #: 6 Overlap #: 10 Alignment: GCTTSWKGTGAGGGC--- -----GGATGGTGAGGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 294 Reverse Complement Original Motif GCCSMCRKCAKCHSAAGC AGCTGTGAGAAGAGGGCCAC AGCTGTGAGMMGASGGCMACHSAAGC Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------GCCSMCRKCAKCHSAAGC AGCTGTGAGAAGAGGGCCAC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 291 Combined Motif Original Motif Reverse Complement AGCTGTGAGMMGASGGCMACHSAAGC TAMGACCTCAGGTCCTCAG AGCTGTGAGMMKACGACCTCAGRWSCTCAG Direction: Forward Position #: 12 Overlap #: 15 Alignment: AGCTGTGAGMMGASGGCMACHSAAGC---- -----------TAMGACCTCAGGTCCTCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 323 Combined Motif Reverse Complement Original Motif CTGAGSWMCTGAGGTCGTRRRCTCACAGCT GCTCTCAGGTCCA CTGAGSWMCTGAGGYYCTMAGSTCMMAGCT Direction: Forward Position #: 14 Overlap #: 13 Alignment: CTGAGSWMCTGAGGTCGTRRRCTCACAGCT -------------GCTCTCAGGTCCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 51 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 51 Motif 17 Reverse Complement Reverse Complement TGCGCGCACCCAC TGHCCTGCKCCCACTGTCT TGHCCTGCGCSCACYSWCT Direction: Forward Position #: 6 Overlap #: 13 Alignment: -----TGCGCGCACCCAC- TGHCCTGCKCCCACTGTCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 159 Combined Motif Original Motif Reverse Complement TGHCCTGCGCSCACYSWCT TGCTCACACAAAGCCTGT TGHCCTGYGCTCACWCAMWGCCTGT Direction: Forward Position #: 8 Overlap #: 12 Alignment: TGHCCTGCGCSCACYSWCT------ -------TGCTCACACAAAGCCTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 289 Combined Motif Reverse Complement Original Motif ACAGGCWRTGWGTGAGCMCAGGHCA TGATGGGTGCACCAAA ACAGGCWRTGTGWKRGSTSMRSCMAA Direction: Forward Position #: 11 Overlap #: 15 Alignment: ACAGGCWRTGWGTGAGCMCAGGHCA- ----------TGATGGGTGCACCAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 312 Combined Motif Reverse Complement Reverse Complement TTYGSKYSASCMYWCACAMWGCCTGT CCCMKGGCACCCTCAGTCCT TTYGSKYSASCCCHCDSRCASCCTSWGTCCT Direction: Forward Position #: 12 Overlap #: 15 Alignment: TTYGSKYSASCMYWCACAMWGCCTGT----- -----------CCCMKGGCACCCTCAGTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 148 Combined Motif Original Motif Reverse Complement TTYGSKYSASCCCHCDSRCASCCTSWGTCCT CTTCGCTGACTCTCTTT TTYGSKYSASCCCCYTSGCWGMCTCTSTYYT Direction: Forward Position #: 14 Overlap #: 17 Alignment: TTYGSKYSASCCCHCDSRCASCCTSWGTCCT -------------CTTCGCTGACTCTCTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 52 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 52 Motif 350 Original Motif Reverse Complement GACTGGCAGGCAGCTCCACC TGCTGGAGGTCCACTCCAGA KRCTGGMRGKCMRCTCCASM Direction: Forward Position #: 1 Overlap #: 20 Alignment: GACTGGCAGGCAGCTCCACC TGCTGGAGGTCCACTCCAGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 105 Combined Motif Original Motif Original Motif KRCTGGMRGKCMRCTCCASM GCCTCTCCCTCCACACCTCC KRCTGGMRGBCWVYYCCWCCACACCTCC Direction: Forward Position #: 9 Overlap #: 12 Alignment: KRCTGGMRGKCMRCTCCASM-------- --------GCCTCTCCCTCCACACCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 100 Combined Motif Reverse Complement Reverse Complement GGAGGTGTGGWGGMMVWGBCKRCCAGKY CGCGGCGCTTGCGGGCCAGC GGAGGTGTGGWGSVCGDSGCTKSCRGGCCAGC Direction: Forward Position #: 13 Overlap #: 16 Alignment: GGAGGTGTGGWGGMMVWGBCKRCCAGKY---- ------------CGCGGCGCTTGCGGGCCAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 165 Combined Motif Original Motif Original Motif GGAGGTGTGGWGSVCGDSGCTKSCRGGCCAGC ATCTGACAGGAGGYRGAGCT GGAGGTGTGGWGSVMKSKGMYAGSAGGCSRRSCT Direction: Forward Position #: 15 Overlap #: 18 Alignment: GGAGGTGTGGWGSVCGDSGCTKSCRGGCCAGC-- --------------ATCTGACAGGAGGYRGAGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 177 Combined Motif Reverse Complement Original Motif AGSMKSGCCTSCTKRCRSRYVSCWCCACACCTCC CCCGAAGCTGCRYRCTCGGT AGSMKSGCCTSCTKRCCBRWAGCTSCACACYTSST Direction: Forward Position #: 16 Overlap #: 19 Alignment: AGSMKSGCCTSCTKRCRSRYVSCWCCACACCTCC- ---------------CCCGAAGCTGCRYRCTCGGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 53 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 53 Motif 309 Reverse Complement Original Motif CTTGGGTGGTCGATGGGAC CATTCTGGGGTCTGGAGGAY CMTTSKGKGGTCKRKRGGAC Direction: Forward Position #: 2 Overlap #: 19 Alignment: -CTTGGGTGGTCGATGGGAC CATTCTGGGGTCTGGAGGAY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 178 Combined Motif Original Motif Original Motif CMTTSKGKGGTCKRKRGGAC ACTGTCTTCCACCTCCACAT CMTTSKGKRSTSTVTDSSACCTCCACAT Direction: Forward Position #: 9 Overlap #: 12 Alignment: CMTTSKGKGGTCKRKRGGAC-------- --------ACTGTCTTCCACCTCCACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 201 Combined Motif Reverse Complement Original Motif ATGTGGAGGTSSDAVASASKYCRSAARG GTAACACTCACCGCGARGGT ATGTGGAGGTSSGWAACACTCMVCRMRRRGGT Direction: Forward Position #: 13 Overlap #: 16 Alignment: ATGTGGAGGTSSDAVASASKYCRSAARG---- ------------GTAACACTCACCGCGARGGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 196 Combined Motif Original Motif Reverse Complement ATGTGGAGGTSSGWAACACTCMVCRMRRRGGT CAAGCCTSKGCAATGGCAGG ATGTGGAGGTSSGWMAMRCYYMBGMAAWGGSWGG Direction: Forward Position #: 15 Overlap #: 18 Alignment: ATGTGGAGGTSSGWAACACTCMVCRMRRRGGT-- --------------CAAGCCTSKGCAATGGCAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Combined Motif Original Motif Original Motif ATGTGGAGGTSSGWMAMRCYYMBGMAAWGGSWGG ATTAGCYRGGCRTGGTGGC ATGTGGAGGTSSGWMAHDMGCCVGGMRTGGBDGS Direction: Forward Position #: 16 Overlap #: 19 Alignment: ATGTGGAGGTSSGWMAMRCYYMBGMAAWGGSWGG ---------------ATTAGCYRGGCRTGGTGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 54 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 54 Motif 7 Original Motif Original Motif AAGGAAAAGAAA GTCTCWAMAAAAAAWAMAAA AARRAAAAVAAAGTCTCWAM Direction: Backward Position #: 1 Overlap #: 12 Alignment: --------AAGGAAAAGAAA GTCTCWAMAAAAAAWAMAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 356 Combined Motif Reverse Complement Reverse Complement YTWGAGACTTTVTTTTKKTT CAGTCTGTGTCTTTTAATT YTWGAGACYWKTYTKTKTYTTTTAATT Direction: Forward Position #: 9 Overlap #: 12 Alignment: YTWGAGACTTTVTTTTKKTT------- --------CAGTCTGTGTCTTTTAATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 214 Combined Motif Original Motif Reverse Complement YTWGAGACYWKTYTKTKTYTTTTAATT GGTTTTCCATTCCTGAG YTWGAGACYWKKBTTTTYCWTTYMWKWG Direction: Forward Position #: 12 Overlap #: 16 Alignment: YTWGAGACYWKTYTKTKTYTTTTAATT- -----------GGTTTTCCATTCCTGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 24 Combined Motif Original Motif Reverse Complement YTWGAGACYWKKBTTTTYCWTTYMWKWG TTTCTTTGACTRG YTWGAGACYWKKTTTYTTYRWYTAKKWG Direction: Forward Position #: 13 Overlap #: 13 Alignment: YTWGAGACYWKKBTTTTYCWTTYMWKWG ------------TTTCTTTGACTRG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 99 Combined Motif Original Motif Reverse Complement YTWGAGACYWKKTTTYTTYRWYTAKKWG AATGAKATCATGTCYTTTGC YTWGAGACYWKKWWTBWKWTHHTRTBHKTTGC Direction: Forward Position #: 13 Overlap #: 16 Alignment: YTWGAGACYWKKTTTYTTYRWYTAKKWG---- ------------AATGAKATCATGTCYTTTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 55 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 55 Motif 234 Reverse Complement Reverse Complement ATGGCTGAATAKTATTCCAT GTGTCKGGAGTTTGTTCCTT RTGKCTGRAKWKTRTTCCWT Direction: Forward Position #: 1 Overlap #: 20 Alignment: ATGGCTGAATAKTATTCCAT GTGTCKGGAGTTTGTTCCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 336 Combined Motif Reverse Complement Original Motif AWGGAAKARWRTMCAGRCAK ATGTAACCAAAYACCACCTG AWGGAAKAATGTAMMSAMABACCACCTG Direction: Forward Position #: 9 Overlap #: 12 Alignment: AWGGAAKARWRTMCAGRCAK-------- --------ATGTAACCAAAYACCACCTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 170 Combined Motif Original Motif Reverse Complement AWGGAAKAATGTAMMSAMABACCACCTG ATTGATMKCCAGGGTTGATT AWGGAAKAATGTAHHGAWMKMCMRSSTKGATT Direction: Forward Position #: 13 Overlap #: 16 Alignment: AWGGAAKAATGTAMMSAMABACCACCTG---- ------------ATTGATMKCCAGGGTTGATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 58 Combined Motif Reverse Complement Original Motif AATCRASSKYGYYYWTCHHTACATTRTTCCWT ATGGACAYTTRGGTTGHTTC AATCRASSKYGYYYATSRAYACWTWGKTYSWTTC Direction: Forward Position #: 15 Overlap #: 18 Alignment: AATCRASSKYGYYYWTCHHTACATTRTTCCWT-- --------------ATGGACAYTTRGGTTGHTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 292 Combined Motif Reverse Complement Original Motif GAAWSMARCWAWGTKTMSATMKMCMRSSTKGATT AAGACCTTCCAGTGGGACAA GAAWSMARCWAWGTKWAGAYCTHCCAGTKGGAYWA Direction: Forward Position #: 16 Overlap #: 19 Alignment: GAAWSMARCWAWGTKTMSATMKMCMRSSTKGATT- ---------------AAGACCTTCCAGTGGGACAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 56 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 56 Motif 177 Original Motif Original Motif CRTGAGCCACYGYRCCYGGC CCCGAAGCTGCRYRCTCGGT CVYGARSCWSYGYRCYYGGY Direction: Backward Position #: 1 Overlap #: 20 Alignment: CRTGAGCCACYGYRCCYGGC CCCGAAGCTGCRYRCTCGGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 112 Combined Motif Original Motif Reverse Complement CVYGARSCWSYGYRCYYGGY CTTGCCCAAGGTCACACAGC CVYGARSCHBTGCVCHHGGTCACACAGC Direction: Forward Position #: 9 Overlap #: 12 Alignment: CVYGARSCWSYGYRCYYGGY-------- --------CTTGCCCAAGGTCACACAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 14 Combined Motif Reverse Complement Reverse Complement GCTGTGTGACCHHGVGCAVDGSKTCMVG AGTGACCCGATTTTCCAGGT GCTGTGTGACCHAGTGMMCVGVTTYWCSAGGT Direction: Forward Position #: 13 Overlap #: 16 Alignment: GCTGTGTGACCHHGVGCAVDGSKTCMVG---- ------------AGTGACCCGATTTTCCAGGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 145 Combined Motif Reverse Complement Original Motif ACCTSGWMAABCVGRYCACTHGGTCACACAGC GCCAGTCACAAAARGACAMA ACCTSGWMAABCVGGYCASTCRSWMAMRSASMMA Direction: Forward Position #: 15 Overlap #: 18 Alignment: ACCTSGWMAABCVGRYCACTHGGTCACACAGC-- --------------GCCAGTCACAAAARGACAMA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 64 Combined Motif Original Motif Original Motif ACCTSGWMAABCVGGYCASTCRSWMAMRSASMMA GAAGGCAGCTAAGGCCCGGY ACCTSGWMAABCVGGSMAGKCAGCHAAGGMCCRRY Direction: Forward Position #: 16 Overlap #: 19 Alignment: ACCTSGWMAABCVGGYCASTCRSWMAMRSASMMA- ---------------GAAGGCAGCTAAGGCCCGGY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 57 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 57 Motif 55 Reverse Complement Reverse Complement AATAAATATTT ATGGCTGAATAKTATTCCAT ATGRMTRAATAKTWTTCCAT Direction: Forward Position #: 4 Overlap #: 11 Alignment: ---AATAAATATTT------ ATGGCTGAATAKTATTCCAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 70 Combined Motif Reverse Complement Original Motif ATGGAAWARTATTKARMCAT CTATTGTGAATARTGCTGC ATGGAAWAVTATTGWGAMWWRTGCTGC Direction: Forward Position #: 9 Overlap #: 12 Alignment: ATGGAAWARTATTKARMCAT------- --------CTATTGTGAATARTGCTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 137 Combined Motif Reverse Complement Reverse Complement GCAGCAMWWYTCWCAATAVTWTTCCAT TWTACCTATGTAACAAACCT GCAGCAMWWYTYWYAMYWATDTWMCAWACCT Direction: Forward Position #: 12 Overlap #: 16 Alignment: GCAGCAMWWYTCWCAATAVTWTTCCAT---- -----------TWTACCTATGTAACAAACCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 195 Combined Motif Original Motif Reverse Complement GCAGCAMWWYTYWYAMYWATDTWMCAWACCT ACCCAATWTGTAGTCTTTTA GCAGCAMWWYTYWWMCYWATDTDWMRTMYYTTA Direction: Forward Position #: 14 Overlap #: 18 Alignment: GCAGCAMWWYTYWYAMYWATDTWMCAWACCT-- -------------ACCCAATWTGTAGTCTTTTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 168 Combined Motif Original Motif Original Motif GCAGCAMWWYTYWWMCYWATDTDWMRTMYYTTA AGGTATTTCTCCCACC GCAGCAMWWYTYWWASSTATTTBTCVYACYTTA Direction: Forward Position #: 15 Overlap #: 16 Alignment: GCAGCAMWWYTYWWMCYWATDTDWMRTMYYTTA --------------AGGTATTTCTCCCACC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 58 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 58 Motif 85 Original Motif Original Motif ATGGACAYTTRGGTTGHTTC CTAGACATAAAGGTTCTCCA MTRGACATWWAGGTTSTYYM Direction: Backward Position #: 1 Overlap #: 20 Alignment: ATGGACAYTTRGGTTGHTTC CTAGACATAAAGGTTCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 308 Combined Motif Reverse Complement Original Motif YKKASAACCTWWATGTCKAR AAATTAGGCCAATTAATAAC YKKASAACMWATWWGKCYARTTAATAAC Direction: Forward Position #: 9 Overlap #: 12 Alignment: YKKASAACCTWWATGTCKAR-------- --------AAATTAGGCCAATTAATAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 67 Combined Motif Original Motif Reverse Complement YKKASAACMWATWWGKCYARTTAATAAC CACCAGACTCAGGAGCCCAG YKKASAACMWATCASBMGAMTYARKARCCCAG Direction: Forward Position #: 13 Overlap #: 16 Alignment: YKKASAACMWATWWGKCYARTTAATAAC---- ------------CACCAGACTCAGGAGCCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 55 Combined Motif Reverse Complement Original Motif CTGGGKTRMTKARTCYBSTGATWYGTTSTYYM ATGGAATAYTATTCAGCCAT CTGGGKTRMTKARTMTGGWRWWHTRTTCWBCCAT Direction: Forward Position #: 15 Overlap #: 18 Alignment: CTGGGKTRMTKARTCYBSTGATWYGTTSTYYM-- --------------ATGGAATAYTATTCAGCCAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 170 Combined Motif Reverse Complement Original Motif ATGGBWGAAKAHWWKWCCAYAMTYARKARCCCAG AATCAACCCTGGYRATCAAT ATGGBWGAAKAHWWKAMYMAACYCWGGMRMYCART Direction: Forward Position #: 16 Overlap #: 19 Alignment: ATGGBWGAAKAHWWKWCCAYAMTYARKARCCCAG- ---------------AATCAACCCTGGYRATCAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 59 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 59 Motif 155 Original Motif Original Motif CCTCCCSGACGRG TCCCTCCCGGACGGGGYGGC TCCCTCCCGGACGGGGYGGC Direction: Forward Position #: 3 Overlap #: 13 Alignment: --CCTCCCSGACGRG----- TCCCTCCCGGACGGGGYGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 108 Combined Motif Original Motif Reverse Complement TCCCTCCCGGACGGGGYGGC GCGCTCKTCGGGGAGGCTCG TCCCTCCCGSRCKSGKCGGSGAGGCTCG Direction: Forward Position #: 9 Overlap #: 12 Alignment: TCCCTCCCGGACGGGGYGGC-------- --------GCGCTCKTCGGGGAGGCTCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 27 Combined Motif Reverse Complement Original Motif CGAGCCTCSCCGYCSRGKSCGGGAGGGA CACTTCCCAGACGGGGCG CGAGCCTCSCCGCMCDKCCCRGRMGGGRCG Direction: Forward Position #: 13 Overlap #: 16 Alignment: CGAGCCTCSCCGYCSRGKSCGGGAGGGA-- ------------CACTTCCCAGACGGGGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 95 Combined Motif Original Motif Original Motif CGAGCCTCSCCGCMCDKCCCRGRMGGGRCG ACCCYGTCTGGGAGGTG CGAGCCTCSCCGCACCYYSYVKGRGRGGYG Direction: Forward Position #: 14 Overlap #: 17 Alignment: CGAGCCTCSCCGCMCDKCCCRGRMGGGRCG -------------ACCCYGTCTGGGAGGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 36 Combined Motif Original Motif Original Motif CGAGCCTCSCCGCACCYYSYVKGRGRGGYG ACATCCCAGACGATGGGCG CGAGCCTCSCCGCACATCCCAGRCGAKGKGCG Direction: Forward Position #: 14 Overlap #: 17 Alignment: CGAGCCTCSCCGCACCYYSYVKGRGRGGYG-- -------------ACATCCCAGACGATGGGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 60 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 60 Motif 309 Original Motif Original Motif GATCACGAGGTCAGGAG CATTCTGGGGTCTGGAGGAY GAYSATYMYGRGGTCWGGAG Direction: Backward Position #: 4 Overlap #: 17 Alignment: GATCACGAGGTCAGGAG--- CATTCTGGGGTCTGGAGGAY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 290 Combined Motif Original Motif Original Motif GAYSATYMYGRGGTCWGGAG TGATACCCAGGCAAACAG GAYSATYMTGAKRYCHRGRSAAACAG Direction: Forward Position #: 9 Overlap #: 12 Alignment: GAYSATYMYGRGGTCWGGAG------ --------TGATACCCAGGCAAACAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Original Motif Reverse Complement GAYSATYMTGAKRYCHRGRSAAACAG ARCTCCTGKSCTCAAGKGAT GAYSATYMTGADRCYCMKGGRMWCARGKGAT Direction: Forward Position #: 12 Overlap #: 15 Alignment: GAYSATYMTGAKRYCHRGRSAAACAG----- -----------ARCTCCTGKSCTCAAGKGAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 65 Combined Motif Reverse Complement Reverse Complement ATCRCMTGWYKCCYRGMGKDTCAYKATSMTC CGGCGCTGMGCTCGATTTCT ATCRCMTGWYKCCCGGMGYTKCRCTMKAWTYCT Direction: Forward Position #: 14 Overlap #: 18 Alignment: ATCRCMTGWYKCCYRGMGKDTCAYKATSMTC-- -------------CGGCGCTGMGCTCGATTTCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 306 Combined Motif Original Motif Reverse Complement ATCRCMTGWYKCCCGGMGYTKCRCTMKAWTYCT CAAGCGCCAGCTCATGTC ATCRCMTGWYKCCCSRAGCKSCASYWYATKTCT Direction: Forward Position #: 15 Overlap #: 18 Alignment: ATCRCMTGWYKCCCGGMGYTKCRCTMKAWTYCT --------------CAAGCGCCAGCTCATGTC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 61 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 61 Motif 84 Original Motif Reverse Complement GGATCCACTGGGTGAAGCCA GGCACTGCTGGGGGACCCAG GGMWCYRCTGGGKGAMSCMR Direction: Forward Position #: 1 Overlap #: 20 Alignment: GGATCCACTGGGTGAAGCCA GGCACTGCTGGGGGACCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 202 Combined Motif Reverse Complement Reverse Complement KRGSRTCYCCCAGMMGWYCC GAAACTGCTTTGTGATGTGT KRGSRTCYSMMASHVSTTYSTGATGTGT Direction: Forward Position #: 9 Overlap #: 12 Alignment: KRGSRTCYCCCAGMMGWYCC-------- --------GAAACTGCTTTGTGATGTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 144 Combined Motif Original Motif Original Motif KRGSRTCYSMMASHVSTTYSTGATGTGT CCGCTGCACTGTGGGAGCCC KRGSRTCYSMMACCGCTKCAYKRTGKGWGCCC Direction: Forward Position #: 13 Overlap #: 16 Alignment: KRGSRTCYSMMASHVSTTYSTGATGTGT---- ------------CCGCTGCACTGTGGGAGCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 349 Combined Motif Original Motif Reverse Complement KRGSRTCYSMMACCGCTKCAYKRTGKGWGCCC TTCAMTCATGATTTGGCTCT KRGSRTCYSMMACCKYYDCDCDTKRTKTGSCYCT Direction: Forward Position #: 15 Overlap #: 18 Alignment: KRGSRTCYSMMACCGCTKCAYKRTGKGWGCCC-- --------------TTCAMTCATGATTTGGCTCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 108 Combined Motif Reverse Complement Reverse Complement AGMGSCARAKRADGDGDKKRGGTYYSKGAMSCMR GCGCTCKTCGGGGAGGCTCG AGMGSCARAKRADGDGHGCTVGTYBGGGAVGCYVG Direction: Forward Position #: 16 Overlap #: 19 Alignment: AGMGSCARAKRADGDGDKKRGGTYYSKGAMSCMR- ---------------GCGCTCKTCGGGGAGGCTCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 62 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 62 Motif 30 Original Motif Original Motif AGGAACAGCTCCRGTCTAC AGGAGCGCCTCTKCCCGGC AGGARCRSCTCYDSYCKRC Direction: Forward Position #: 1 Overlap #: 19 Alignment: AGGAACAGCTCCRGTCTAC AGGAGCGCCTCTKCCCGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 234 Original Motif Original Motif AGGARCRSCTCYDSYCKRC AAGGAACAAACTCCRGACAC AAGGAACAARSWVCRGMYMYDSYCKRC Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------AGGARCRSCTCYDSYCKRC AAGGAACAAACTCCRGACAC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 165 Combined Motif Original Motif Reverse Complement AAGGAACAARSWVCRGMYMYDSYCKRC AGCTCMKCCTCCTGTCAGAT AAGGAACAARSAGCDSMBCCTCCYGKCAGAT Direction: Forward Position #: 12 Overlap #: 16 Alignment: AAGGAACAARSWVCRGMYMYDSYCKRC---- -----------AGCTCMKCCTCCTGTCAGAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 331 Combined Motif Original Motif Original Motif AAGGAACAARSAGCDSMBCCTCCYGKCAGAT CCACCACAGCTCAAGGAGGC AAGGAACAARSAGCCMCCMCWSCTSAMRGAKGC Direction: Forward Position #: 14 Overlap #: 18 Alignment: AAGGAACAARSAGCDSMBCCTCCYGKCAGAT-- -------------CCACCACAGCTCAAGGAGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 350 Combined Motif Reverse Complement Reverse Complement GCRTCKRTSAGSWGYGGYGGCTSMTTGTTCCTT TGCTGGAGGTCCACTCCAGA GCRTCKRTSAGSWGTGSTGGMKGHYYRYTCCWKA Direction: Forward Position #: 15 Overlap #: 19 Alignment: GCRTCKRTSAGSWGYGGYGGCTSMTTGTTCCTT- --------------TGCTGGAGGTCCACTCCAGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 63 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 63 Motif 170 Reverse Complement Original Motif AAAMAMMKMATGTTCTCACT AATCAACCCTGGYRATCAAT AAWCAACSCWKGTKMTCAMT Direction: Forward Position #: 1 Overlap #: 20 Alignment: AAAMAMMKMATGTTCTCACT AATCAACCCTGGYRATCAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 99 Combined Motif Original Motif Reverse Complement AAWCAACSCWKGTKMTCAMT AATGAKATCATGTCYTTTGC AAWCAACSMAKGWKATCAHKTCYTTTGC Direction: Forward Position #: 9 Overlap #: 12 Alignment: AAWCAACSCWKGTKMTCAMT-------- --------AATGAKATCATGTCYTTTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 171 Combined Motif Reverse Complement Reverse Complement GCAAAKGARHTGATRWCRTYSGTTGWTT ACTTTGGACTGTGGACTTTT GCAAAKGARHTGAYTTYGKWCKKTGDWYTTTT Direction: Forward Position #: 13 Overlap #: 16 Alignment: GCAAAKGARHTGATRWCRTYSGTTGWTT---- ------------ACTTTGGACTGTGGACTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 179 Combined Motif Reverse Complement Reverse Complement AAAAKWHCAYRGWYCMAAKTCAHKTCYTTTGC GAATACCTCCTGAAGGACCT AAAAKWHCAYRGWYVAATRYCWCYTSAWKKRCCT Direction: Forward Position #: 15 Overlap #: 18 Alignment: AAAAKWHCAYRGWYCMAAKTCAHKTCYTTTGC-- --------------GAATACCTCCTGAAGGACCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Combined Motif Reverse Complement Reverse Complement AGGKRYWTSAKGWGMKATTVKWCKKTGDWYTTTT MGGGATATAATCTCCTGGTG AGGKRYWTSAKGWGMHRKKATAYADTSTHCTKKTG Direction: Forward Position #: 16 Overlap #: 19 Alignment: AGGKRYWTSAKGWGMKATTVKWCKKTGDWYTTTT- ---------------MGGGATATAATCTCCTGGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 64 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 64 Motif 100 Reverse Complement Reverse Complement KCCGGGCCTTAGCTGCCTTC CGCGGCGCTTGCGGGCCAGC BSCGGSSCTTRSSKGCCWKC Direction: Backward Position #: 1 Overlap #: 20 Alignment: KCCGGGCCTTAGCTGCCTTC CGCGGCGCTTGCGGGCCAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Original Motif Reverse Complement BSCGGSSCTTRSSKGCCWKC TMGGGAGGCTGAGGCAGGAG BSCGGSSCTHGGGDGSCTGMGGCAGGAG Direction: Forward Position #: 9 Overlap #: 12 Alignment: BSCGGSSCTTRSSKGCCWKC-------- --------TMGGGAGGCTGAGGCAGGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 105 Combined Motif Original Motif Reverse Complement BSCGGSSCTHGGGDGSCTGMGGCAGGAG GGAGGTGTGGAGGGAGAGGC BSCGGSSCTHGGGGRGSTGHGGMRGGAGAGGC Direction: Forward Position #: 13 Overlap #: 16 Alignment: BSCGGSSCTHGGGDGSCTGMGGCAGGAG---- ------------GGAGGTGTGGAGGGAGAGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 56 Combined Motif Reverse Complement Reverse Complement GCCTCTCCMYCCHCASCKCCCCHAGSSCCGSB GCCKGGMKCMGTGGCTCAKG GCCTCTCCMYCCHCRCCKSSCBMAGKGSCKCAKG Direction: Forward Position #: 15 Overlap #: 18 Alignment: GCCTCTCCMYCCHCASCKCCCCHAGSSCCGSB-- --------------GCCKGGMKCMGTGGCTCAKG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 58 Combined Motif Original Motif Original Motif GCCTCTCCMYCCHCRCCKSSCBMAGKGSCKCAKG ATGGACAYTTRGGTTGHTTC GCCTCTCCMYCCHCRMYGGRCAYWKDGGYTSHTKC Direction: Forward Position #: 16 Overlap #: 19 Alignment: GCCTCTCCMYCCHCRCCKSSCBMAGKGSCKCAKG- ---------------ATGGACAYTTRGGTTGHTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 65 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 65 Motif 8 Reverse Complement Reverse Complement CGGCGCTGMGCTCGATTTCT ARCTCCTGKSCTCAAGKGAT MGSYSCTGVGCTCRAKTKMT Direction: Forward Position #: 1 Overlap #: 20 Alignment: CGGCGCTGMGCTCGATTTCT ARCTCCTGKSCTCAAGKGAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 48 Combined Motif Original Motif Original Motif MGSYSCTGVGCTCRAKTKMT AGCTCCCAGCGTGAGCGACG MGSYSCTGAGCTCCMAKYVTGAGCGACG Direction: Forward Position #: 9 Overlap #: 12 Alignment: MGSYSCTGVGCTCRAKTKMT-------- --------AGCTCCCAGCGTGAGCGACG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 139 Combined Motif Original Motif Reverse Complement MGSYSCTGAGCTCCMAKYVTGAGCGACG AWTKKTGGTTKCCAGKGGCT MGSYSCTGAGCTMHHDKTGKKWGCSASGGGCT Direction: Forward Position #: 13 Overlap #: 16 Alignment: MGSYSCTGAGCTCCMAKYVTGAGCGACG---- ------------AWTKKTGGTTKCCAGKGGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 176 Combined Motif Original Motif Original Motif MGSYSCTGAGCTMHHDKTGKKWGCSASGGGCT AGGCCCCAGTGTSTGTTGTT MGSYSCTGAGCTMHAGGYSYBAGYGWSKGKYKTT Direction: Forward Position #: 15 Overlap #: 18 Alignment: MGSYSCTGAGCTMHHDKTGKKWGCSASGGGCT-- --------------AGGCCCCAGTGTSTGTTGTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 225 Combined Motif Reverse Complement Original Motif AARMYCRSWCMCTBKSKCCTHRAGCTCAGSMSCY GCACATGTAYCCYAGAACTT AARMYCRSWCMCTBKGSMCWTGWRCYCHRGARCTT Direction: Forward Position #: 16 Overlap #: 19 Alignment: AARMYCRSWCMCTBKSKCCTHRAGCTCAGSMSCY- ---------------GCACATGTAYCCYAGAACTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 66 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 66 Motif 145 Reverse Complement Reverse Complement TGTGTGTGTGTKTGTGTGT TYTGTCMTTTTGTGACTGGC TKTGTSYKTKTGTGWSTGKC Direction: Forward Position #: 1 Overlap #: 19 Alignment: TGTGTGTGTGTKTGTGTGT- TYTGTCMTTTTGTGACTGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 109 Combined Motif Reverse Complement Original Motif GRCASWCACARARMSACARA GAGAGAGAGAGAGAGAGAGA GRCASWCASAGAGAGASAGAGAGAGAGA Direction: Forward Position #: 9 Overlap #: 12 Alignment: GRCASWCACARARMSACARA-------- --------GAGAGAGAGAGAGAGAGAGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 139 Combined Motif Original Motif Reverse Complement GRCASWCASAGAGAGASAGAGAGAGAGA AWTKKTGGTTKCCAGKGGCT GRCASWCASAGARABDGWGRKWGMSAGDGGCT Direction: Forward Position #: 13 Overlap #: 16 Alignment: GRCASWCASAGAGAGASAGAGAGAGAGA---- ------------AWTKKTGGTTKCCAGKGGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Reverse Complement AGCCDCTSRCWRMCWCDVTKTCTSTGWSTGKC TTTYTWTTTTTTYTWGAGAC AGCCDCTSRCWRMCTYTHTTTYTTTKTTTGWSAC Direction: Forward Position #: 15 Overlap #: 18 Alignment: AGCCDCTSRCWRMCWCDVTKTCTSTGWSTGKC-- --------------TTTYTWTTTTTTYTWGAGAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 254 Combined Motif Original Motif Reverse Complement AGCCDCTSRCWRMCTYTHTTTYTTTKTTTGWSAC ATAGGAATGCTTGTGATTTT AGCCDCTSRCWRMCTWTAKKWATKYTTBTGAKWYT Direction: Forward Position #: 16 Overlap #: 19 Alignment: AGCCDCTSRCWRMCTYTHTTTYTTTKTTTGWSAC- ---------------ATAGGAATGCTTGTGATTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 67 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 67 Motif 26 Original Motif Reverse Complement CTGGGCTCCTGAGTCTGGTG TMGGGAGGCTGAGGCAGGAG YTGGGMKSCTGAGKCWGGWG Direction: Backward Position #: 1 Overlap #: 20 Alignment: CTGGGCTCCTGAGTCTGGTG TMGGGAGGCTGAGGCAGGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 29 Combined Motif Original Motif Original Motif YTGGGMKSCTGAGKCWGGWG CTGGGCRACAGAGYRAGACY YTGGGMKSCTGRGBMASRDRGYRAGACY Direction: Forward Position #: 9 Overlap #: 12 Alignment: YTGGGMKSCTGAGKCWGGWG-------- --------CTGGGCRACAGAGYRAGACY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 84 Combined Motif Original Motif Reverse Complement YTGGGMKSCTGRGBMASRDRGYRAGACY GGCACTGCTGGGGGACCCAG YTGGGMKSCTGRGGCACTGVKSGRGRMCCCAG Direction: Forward Position #: 13 Overlap #: 16 Alignment: YTGGGMKSCTGRGBMASRDRGYRAGACY---- ------------GGCACTGCTGGGGGACCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 58 Combined Motif Reverse Complement Original Motif CTGGGYMCMCSRVCAGTGCCKCAGSRRCCCAK ATGGACAYTTRGGTTGHTTC CTGGGYMCMCSRVCAKKGVCDCWKVRGYYSHTTC Direction: Forward Position #: 15 Overlap #: 18 Alignment: CTGGGYMCMCSRVCAGTGCCKCAGSRRCCCAK-- --------------ATGGACAYTTRGGTTGHTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 64 Combined Motif Reverse Complement Reverse Complement GAAHSMMCMVRWGDGBCYRTGVKSGRGRMCCCAG KCCGGGCCTTAGCTGCCTTC GAAHSMMCMVRWGDGKCCGKGCBTKAGCTSCCWKC Direction: Forward Position #: 16 Overlap #: 19 Alignment: GAAHSMMCMVRWGDGBCYRTGVKSGRGRMCCCAG- ---------------KCCGGGCCTTAGCTGCCTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 68 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 68 Motif 52 Original Motif Original Motif CATGGCGGGCTGCAGGTC GACTGGCAGGCAGCTCCACC GMMTGGCRGGCWGCWSSWCC Direction: Forward Position #: 2 Overlap #: 18 Alignment: -CATGGCGGGCTGCAGGTC- GACTGGCAGGCAGCTCCACC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 164 Combined Motif Original Motif Reverse Complement GMMTGGCRGGCWGCWSSWCC GCGMGCGGGAACCGGGGCT GMMTGGCRGSSAGCDGGAMCCGGGGCT Direction: Forward Position #: 9 Overlap #: 12 Alignment: GMMTGGCRGGCWGCWSSWCC------- --------GCGMGCGGGAACCGGGGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 309 Combined Motif Reverse Complement Reverse Complement AGCCCCGGYTCCHGCTSSCKGCCARYC MTCCTCCAGACCCCAGAATG AGCCCCGGYTCMTSCTCCMGRCCMVWSAATG Direction: Forward Position #: 12 Overlap #: 16 Alignment: AGCCCCGGYTCCHGCTSSCKGCCARYC---- -----------MTCCTCCAGACCCCAGAATG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 53 Combined Motif Reverse Complement Reverse Complement CATTSWVYGGKCYGGAGSARGAMCCGGGGCT CTTGGGTGGTCGATGGGAC CATTSWVYGGKCYSKWGGRKGRWCSRKGGSWC Direction: Forward Position #: 14 Overlap #: 18 Alignment: CATTSWVYGGKCYGGAGSARGAMCCGGGGCT- -------------CTTGGGTGGTCGATGGGAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 310 Combined Motif Reverse Complement Original Motif GWSCCRKSGWMCRMCCWRSMGRCCMVWSAATG CCCATGCAAGTCYRAAATCC GWSCCRKSGWMCRMCCMAKVSAMSWCYGAAWKCC Direction: Forward Position #: 15 Overlap #: 18 Alignment: GWSCCRKSGWMCRMCCWRSMGRCCMVWSAATG-- --------------CCCATGCAAGTCYRAAATCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 69 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 69 Motif 102 Original Motif Reverse Complement GTAGCTGGGAYTACA GTTGTGAGGATTAAATGAG GTWGYKRGGATTAMATGAG Direction: Forward Position #: 1 Overlap #: 15 Alignment: GTAGCTGGGAYTACA---- GTTGTGAGGATTAAATGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 106 Reverse Complement Original Motif CTCATYTAATCCKRMCWAC ATTGGTGTATTTACAATCCC ATTGGTGTMTYWWCWAWYCCKRMCWAC Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------CTCATYTAATCCKRMCWAC ATTGGTGTATTTACAATCCC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 290 Combined Motif Original Motif Original Motif ATTGGTGTMTYWWCWAWYCCKRMCWAC TGATACCCAGGCAAACAG ATTGGTGTMTYTRMTAYCCMGGCMAACAG Direction: Forward Position #: 12 Overlap #: 16 Alignment: ATTGGTGTMTYWWCWAWYCCKRMCWAC-- -----------TGATACCCAGGCAAACAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 104 Combined Motif Reverse Complement Reverse Complement CTGTTYGCCYGGKTAYMAKAYACACCAAT CTCCAGKTMCATCCATGTTG CTGTTYGCCYGGVTMCADKWHMMWCCAWKTTG Direction: Forward Position #: 13 Overlap #: 17 Alignment: CTGTTYGCCYGGKTAYMAKAYACACCAAT--- ------------CTCCAGKTMCATCCATGTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 76 Combined Motif Original Motif Reverse Complement CTGTTYGCCYGGVTMCADKWHMMWCCAWKTTG CMTAGYACAGTGCCTGGCAC CTGTTYGCCYGGVTCCHAGHACADYSMMTKKSAC Direction: Forward Position #: 15 Overlap #: 18 Alignment: CTGTTYGCCYGGVTMCADKWHMMWCCAWKTTG-- --------------CMTAGYACAGTGCCTGGCAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 70 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 70 Motif 191 Reverse Complement Reverse Complement GCAGCAMTATTCACAATAG GCTGCARTCTCGGCACTTT GCWGCAVTMTYSRCAMTWK Direction: Forward Position #: 1 Overlap #: 19 Alignment: GCAGCAMTATTCACAATAG GCTGCARTCTCGGCACTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 106 Reverse Complement Reverse Complement RWARTGMSMARABTGCWGC GGGATTGTAAATACACCAAT GGGATTGTAAAKWSACCAAWBTGCWGC Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------RWARTGMSMARABTGCWGC GGGATTGTAAATACACCAAT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 85 Combined Motif Original Motif Reverse Complement GGGATTGTAAAKWSACCAAWBTGCWGC TGGAGAACCTTTATGTCTAG GGGATTGTAAATGGASMAMHTTKMTGYCTAG Direction: Forward Position #: 12 Overlap #: 16 Alignment: GGGATTGTAAAKWSACCAAWBTGCWGC---- -----------TGGAGAACCTTTATGTCTAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 294 Combined Motif Original Motif Reverse Complement GGGATTGTAAATGGASMAMHTTKMTGYCTAG GTGGCCCTCTTCTCACAGCT GGGATTGTAAATGGWGRMCCTYTTYKCMYAGCT Direction: Forward Position #: 14 Overlap #: 18 Alignment: GGGATTGTAAATGGASMAMHTTKMTGYCTAG-- -------------GTGGCCCTCTTCTCACAGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 201 Combined Motif Original Motif Original Motif GGGATTGTAAATGGWGRMCCTYTTYKCMYAGCT GTAACACTCACCGCGARGGT GGGATTGTAAATGGDKAACMYTYACYSCBAGSKT Direction: Forward Position #: 15 Overlap #: 19 Alignment: GGGATTGTAAATGGWGRMCCTYTTYKCMYAGCT- --------------GTAACACTCACCGCGARGGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 71 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 71 Motif 304 Original Motif Reverse Complement AGCACTTTG AGCAGYTTGGAAACACT AGCASTTTGGAAACACT Direction: Forward Position #: 1 Overlap #: 9 Alignment: AGCACTTTG-------- AGCAGYTTGGAAACACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 73 Combined Motif Original Motif Reverse Complement AGCASTTTGGAAACACT CTTGCAGTTTG AGCASTYTKGMARYWYK Direction: Forward Position #: 7 Overlap #: 11 Alignment: AGCASTTTGGAAACACT ------CTTGCAGTTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 134 Combined Motif Reverse Complement Reverse Complement RKWKKTYCYAMASTGCT TGCAGTTTG RKWKKTTSCAVWBTGCT Direction: Forward Position #: 7 Overlap #: 9 Alignment: RKWKKTYCYAMASTGCT ------TGCAGTTTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 123 Combined Motif Original Motif Reverse Complement RKWKKTTSCAVWBTGCT CTCAGACTGCT RKWKKTYBCAGACTGCT Direction: Forward Position #: 7 Overlap #: 11 Alignment: RKWKKTTSCAVWBTGCT ------CTCAGACTGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 202 Reverse Complement Original Motif AGCAGTCTGVKARYWYK ACACATCACAAAGCAGTTTC ACACATCASMARKCWGHTWVYWYK Direction: Forward Position #: 8 Overlap #: 13 Alignment: -------AGCAGTCTGVKARYWYK ACACATCACAAAGCAGTTTC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 72 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 72 Motif 89 Original Motif Reverse Complement CGCACTCCTCAGCC TACACCCTCCGCAGCC CRCMCTCCKCAGCCTA Direction: Backward Position #: 1 Overlap #: 14 Alignment: --CGCACTCCTCAGCC TACACCCTCCGCAGCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 26 Original Motif Original Motif CRCMCTCCKCAGCCTA CTCCTGCCTCAGCCTCCCRA CTCCTGCCWCASYCYBCMGMCTA Direction: Forward Position #: 8 Overlap #: 13 Alignment: -------CRCMCTCCKCAGCCTA CTCCTGCCTCAGCCTCCCRA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 313 Combined Motif Reverse Complement Reverse Complement TAGRCYGBKGMSTGWGGCAGGAG MGCTGAGGCAGGAG TAGRCYGBKRRCTGAGGCAGGAG Direction: Forward Position #: 10 Overlap #: 14 Alignment: TAGRCYGBKGMSTGWGGCAGGAG ---------MGCTGAGGCAGGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 67 Combined Motif Reverse Complement Reverse Complement CTCCTGCCTCAGMMYBCMGMCTA CACCAGACTCAGGAGCCCAG CTCCTGCCTCASCABACTSASKAGCCCAG Direction: Forward Position #: 10 Overlap #: 14 Alignment: CTCCTGCCTCAGMMYBCMGMCTA------ ---------CACCAGACTCAGGAGCCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 105 Combined Motif Original Motif Original Motif CTCCTGCCTCASCABACTSASKAGCCCAG GCCTCTCCCTCCACACCTCC CTCCTGCCTCASSMCTCTCMCTMSMCMMSTCC Direction: Forward Position #: 13 Overlap #: 17 Alignment: CTCCTGCCTCASCABACTSASKAGCCCAG--- ------------GCCTCTCCCTCCACACCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 73 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 73 Motif 292 Original Motif Reverse Complement CAAACTGCAAG TTGTCCCACTGGAAGGTCTT GTCTTCMMACTGSAAGTTGT Direction: Backward Position #: 6 Overlap #: 11 Alignment: ----CAAACTGCAAG----- TTGTCCCACTGGAAGGTCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Reverse Complement Reverse Complement ACAACTTSCAGTYYGAAGAC GAGSTTGCAGTGAGC ACAACTTSSAGBTTGMAGWSAGC Direction: Forward Position #: 9 Overlap #: 12 Alignment: ACAACTTSCAGTYYGAAGAC--- --------GAGSTTGCAGTGAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 330 Combined Motif Reverse Complement Original Motif GCTSWCTYCAAVCTSSAAGTTGT AAAACCAGCAAGTTTTTAT GCTSWCTYCAAAMYCARMRWKKTTTTAT Direction: Forward Position #: 10 Overlap #: 14 Alignment: GCTSWCTYCAAVCTSSAAGTTGT----- ---------AAAACCAGCAAGTTTTTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 245 Combined Motif Original Motif Original Motif GCTSWCTYCAAAMYCARMRWKKTTTTAT CAGACTGCCTCCTCAA GCTSWCTYCAAACMSAVHGHBTYYTYAW Direction: Forward Position #: 13 Overlap #: 16 Alignment: GCTSWCTYCAAAMYCARMRWKKTTTTAT ------------CAGACTGCCTCCTCAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 293 Combined Motif Reverse Complement Original Motif WTMAMMABDCHVTSYGTTTGMAGWSAGC CTGACTGGGAGACACCTCCC WTMAMMABDCHVYYDRYTKGRAGACASCTCCC Direction: Forward Position #: 13 Overlap #: 16 Alignment: WTMAMMABDCHVTSYGTTTGMAGWSAGC---- ------------CTGACTGGGAGACACCTCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 74 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 74 Motif 27 Original Motif Original Motif CACTTCCTAGATGG CACTTCCCAGACGGGGCG CACTTCCYAGAYGGGGCG Direction: Forward Position #: 1 Overlap #: 14 Alignment: CACTTCCTAGATGG---- CACTTCCCAGACGGGGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 95 Combined Motif Reverse Complement Original Motif CGCCCCKTCTKGGAAGTG ACCCYGTCTGGGAGGTG CGCCCCKWCYSBGWMKKGGAGGTG Direction: Forward Position #: 8 Overlap #: 11 Alignment: CGCCCCKTCTKGGAAGTG------ -------ACCCYGTCTGGGAGGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 45 Combined Motif Reverse Complement Original Motif CACCTCCYYRWCBSMGWYGGGGCG TGCCCAGTCTGGAAAGTG CACCTCCYYRTSCCCRGTSKGGMRAGTG Direction: Forward Position #: 11 Overlap #: 14 Alignment: CACCTCCYYRWCBSMGWYGGGGCG---- ----------TGCCCAGTCTGGAAAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Combined Motif Original Motif Reverse Complement CACCTCCYYRTSCCCRGTSKGGMRAGTG TCACKMGGGAAGCGCAAG CACCTCCYYRTSYCMVKYGGGRAGMGYRAG Direction: Forward Position #: 13 Overlap #: 16 Alignment: CACCTCCYYRTSCCCRGTSKGGMRAGTG-- ------------TCACKMGGGAAGCGCAAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 155 Combined Motif Original Motif Reverse Complement CACCTCCYYRTSYCMVKYGGGRAGMGYRAG GCCKCCCCGTCCGGGAGGGA CACCTCCYYRTSYSCCKCSSSGWSMGKGAGGGA Direction: Forward Position #: 14 Overlap #: 17 Alignment: CACCTCCYYRTSYCMVKYGGGRAGMGYRAG--- -------------GCCKCCCCGTCCGGGAGGGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 75 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 75 Motif 331 Original Motif Reverse Complement CATGGAGCGGKK GCCTCCTTGAGCTGTGGTGG GCCTCMTKGAGCKGTGGTGG Direction: Forward Position #: 5 Overlap #: 12 Alignment: ----CATGGAGCGGKK---- GCCTCCTTGAGCTGTGGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 56 Combined Motif Original Motif Reverse Complement GCCTCMTKGAGCKGTGGTGG GCCKGGMKCMGTGGCTCAKG GCCTCMTKGMSSGGHGSTGKGGCTCAKG Direction: Forward Position #: 9 Overlap #: 12 Alignment: GCCTCMTKGAGCKGTGGTGG-------- --------GCCKGGMKCMGTGGCTCAKG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 52 Combined Motif Original Motif Reverse Complement GCCTCMTKGMSSGGHGSTGKGGCTCAKG GGTGGAGCTGCCTGCCAGTC GCCTCMTKGMSSGGTGGAGSKGCYYRCSAGTC Direction: Forward Position #: 13 Overlap #: 16 Alignment: GCCTCMTKGMSSGGHGSTGKGGCTCAKG---- ------------GGTGGAGCTGCCTGCCAGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 43 Combined Motif Original Motif Reverse Complement GCCTCMTKGMSSGGTGGAGSKGCYYRCSAGTC AGGAGRCMCTCTGCCTGGC GCCTCMTKGMSSGGWGGAGVBSCTCDGCMKKSC Direction: Forward Position #: 15 Overlap #: 18 Alignment: GCCTCMTKGMSSGGTGGAGSKGCYYRCSAGTC- --------------AGGAGRCMCTCTGCCTGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 68 Combined Motif Reverse Complement Reverse Complement GSYYYGCDGAGSBVCTCCWCCSSYCYAYGAGGC GACCTGCAGCCCGCCATG GSYYYGCDGAGSBVSWCCTSCAGCCCRCSAKGC Direction: Forward Position #: 15 Overlap #: 18 Alignment: GSYYYGCDGAGSBVCTCCWCCSSYCYAYGAGGC --------------GACCTGCAGCCCGCCATG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 76 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 76 Motif 201 Original Motif Original Motif GTGCCAGGCACTGTKCTARG GTAACACTCACCGCGARGGT GTRMCASKCACYGYGMDRGK Direction: Backward Position #: 1 Overlap #: 20 Alignment: GTGCCAGGCACTGTKCTARG GTAACACTCACCGCGARGGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 109 Combined Motif Original Motif Original Motif GTRMCASKCACYGYGMDRGK GAGAGAGAGAGAGAGAGAGA GTRMCASKSASWGHGAGRGWGAGAGAGA Direction: Forward Position #: 9 Overlap #: 12 Alignment: GTRMCASKCACYGYGMDRGK-------- --------GAGAGAGAGAGAGAGAGAGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Original Motif Reverse Complement GTRMCASKSASWGHGAGRGWGAGAGAGA GGGTCAGGGAGTTCCCTTTC GTRMCASKSASWGGGWSAGGGAGWKMSMTTTC Direction: Forward Position #: 13 Overlap #: 16 Alignment: GTRMCASKSASWGHGAGRGWGAGAGAGA---- ------------GGGTCAGGGAGTTCCCTTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 321 Combined Motif Reverse Complement Reverse Complement GAAARSRRWCTCCCTSWCCCWSTSRSTGYKAC GCTCCACCCAGTTCGAGCTT GAAARSRRWCTCCCKCTCCMCCYAGBTSBWRCTT Direction: Forward Position #: 15 Overlap #: 18 Alignment: GAAARSRRWCTCCCTSWCCCWSTSRSTGYKAC-- --------------GCTCCACCCAGTTCGAGCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 311 Combined Motif Original Motif Original Motif GAAARSRRWCTCCCKCTCCMCCYAGBTSBWRCTT GGCATCACGGATCCTACCAA GAAARSRRWCTCCCKGKCMTCMCRGATCCTACYWA Direction: Forward Position #: 16 Overlap #: 19 Alignment: GAAARSRRWCTCCCKCTCCMCCYAGBTSBWRCTT- ---------------GGCATCACGGATCCTACCAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 77 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 77 Motif 173 Reverse Complement Reverse Complement TTTCTTCCT TTGTTTCCTT TTKYTTCCTT Direction: Forward Position #: 1 Overlap #: 9 Alignment: TTTCTTCCT- TTGTTTCCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 234 Reverse Complement Original Motif AAGGAAMYAA AAGGAACAAACTCCRGACAC AAGGAASRAACTMMRGACAC Direction: Forward Position #: 5 Overlap #: 10 Alignment: ----AAGGAAMYAA------ AAGGAACAAACTCCRGACAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 327 Combined Motif Reverse Complement Reverse Complement GTGTCKYRAGTTKSTTCCTT GAAATTGACTTCCTCCT GTGTCKYRRRWWTBKWCYTYCTCCT Direction: Forward Position #: 9 Overlap #: 12 Alignment: GTGTCKYRAGTTKSTTCCTT----- --------GAAATTGACTTCCTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 54 Combined Motif Reverse Complement Original Motif AGGAGKAMGWRVAWWKMMMRGACAC AAGGAAAAGAAA AGGAGKAMGWAARDAWMAVARACAC Direction: Forward Position #: 11 Overlap #: 12 Alignment: AGGAGKAMGWRVAWWKMMMRGACAC ----------AAGGAAAAGAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 230 Combined Motif Reverse Complement Reverse Complement GTGTKTVTYWTHKTTWCYTYCTCCT TTTTCACATGCCTTTCT GTGTKTVTYWTTTTYACHTGCYYYTCT Direction: Forward Position #: 11 Overlap #: 15 Alignment: GTGTKTVTYWTHKTTWCYTYCTCCT-- ----------TTTTCACATGCCTTTCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 78 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 78 Motif 96 Reverse Complement Original Motif CCGCGGGGCAGGGCTCG AAGCTGAGGGAGCCGGCTCC CYGMGGGRSMSGGCTCSAAG Direction: Backward Position #: 1 Overlap #: 17 Alignment: ---CCGCGGGGCAGGGCTCG AAGCTGAGGGAGCCGGCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 30 Combined Motif Original Motif Reverse Complement CYGMGGGRSMSGGCTCSAAG GCCGGGRAGAGGCGCTCCT CYGMGGGRGCSGGSWMGARGCGCTCCT Direction: Forward Position #: 9 Overlap #: 12 Alignment: CYGMGGGRSMSGGCTCSAAG------- --------GCCGGGRAGAGGCGCTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 307 Combined Motif Original Motif Original Motif CYGMGGGRGCSGGSWMGARGCGCTCCT AGATGCCAGCCAGAGCTCT CYGMGGGRGCSRGVTRSMAGCSMKMSYTCT Direction: Forward Position #: 12 Overlap #: 16 Alignment: CYGMGGGRGCSGGSWMGARGCGCTCCT--- -----------AGATGCCAGCCAGAGCTCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 56 Combined Motif Reverse Complement Reverse Complement AGAKSYYRSGCTYSMABCKSGCMCCCYCKG GCCKGGMKCMGTGGCTCAKG AGAKSYYRSGCTYGCMKSGVGCMSYSKCTSAKG Direction: Forward Position #: 14 Overlap #: 17 Alignment: AGAKSYYRSGCTYSMABCKSGCMCCCYCKG--- -------------GCCKGGMKCMGTGGCTCAKG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 291 Combined Motif Original Motif Original Motif AGAKSYYRSGCTYGCMKSGVGCMSYSKCTSAKG CTGAGGACCTGAGGTCRTA AGAKSYYRSGCTYGCTGAGGRCCBBVGSTCATR Direction: Forward Position #: 15 Overlap #: 19 Alignment: AGAKSYYRSGCTYGCMKSGVGCMSYSKCTSAKG --------------CTGAGGACCTGAGGTCRTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 79 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 79 Motif 341 Original Motif Reverse Complement AATGAATGAAT TGGATGGATGGATGGAT TGRATGRATGRATGGAT Direction: Forward Position #: 3 Overlap #: 11 Alignment: --AATGAATGAAT---- TGGATGGATGGATGGAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 211 Original Motif Original Motif TGRATGRATGRATGGAT GACTTCAAGAATGAAGCCG GACTTCAWGAATGAAKSVRTGGAT Direction: Forward Position #: 8 Overlap #: 12 Alignment: -------TGRATGRATGRATGGAT GACTTCAAGAATGAAGCCG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 224 Combined Motif Reverse Complement Reverse Complement ATCCAKVSYTTCATTCWTGAAGTC CAAAGTCTTAACTCATT ATCCAKVSYTYMAWKYHTKAASTCATT Direction: Forward Position #: 11 Overlap #: 14 Alignment: ATCCAKVSYTTCATTCWTGAAGTC--- ----------CAAAGTCTTAACTCATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 241 Combined Motif Reverse Complement Original Motif AATGASTTRADMYWTRKAKSVRTGGAT GCACTGAGTGAACGA AATGASTTRADGCAYKGAGTGAWSGAT Direction: Forward Position #: 12 Overlap #: 15 Alignment: AATGASTTRADMYWTRKAKSVRTGGAT -----------GCACTGAGTGAACGA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 104 Combined Motif Original Motif Reverse Complement AATGASTTRADGCAYKGAGTGAWSGAT CTCCAGKTMCATCCATGTTG AATGASTTRADVYMCAGAKHSATCSATGTTG Direction: Forward Position #: 12 Overlap #: 16 Alignment: AATGASTTRADGCAYKGAGTGAWSGAT---- -----------CTCCAGKTMCATCCATGTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 80 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 80 Motif 319 Original Motif Original Motif WTTTTWAAAAW TAGTTTTTAACAA RTTTTTAAMAATA Direction: Backward Position #: 1 Overlap #: 11 Alignment: --WTTTTWAAAAW TAGTTTTTAACAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 81 Combined Motif Reverse Complement Reverse Complement TATTYTTAAAAAM ATTTTACAGATG TATTHTTWWAMASATG Direction: Forward Position #: 5 Overlap #: 9 Alignment: TATTYTTAAAAAM--- ----ATTTTACAGATG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 70 Original Motif Reverse Complement TATTHTTWWAMASATG GCAGCAMTATTCACAATAG GCAGCAYWWTTYWHAAHAGATG Direction: Forward Position #: 7 Overlap #: 13 Alignment: ------TATTHTTWWAMASATG GCAGCAMTATTCACAATAG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 303 Combined Motif Reverse Complement Reverse Complement CATCTHTTDWMAAWWMTGCTGC ACCATCTTTAAGAACT CATCTHTTDACMATHTTKMWGMACT Direction: Forward Position #: 10 Overlap #: 13 Alignment: CATCTHTTDWMAAWWMTGCTGC--- ---------ACCATCTTTAAGAACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 21 Combined Motif Reverse Complement Reverse Complement AGTYCWYRAADATRGTHAAHAGATG KACGGGCTTAARAAACGGC AGTYCWYRAAKAYGGDCWWAARAWRCGGC Direction: Forward Position #: 11 Overlap #: 15 Alignment: AGTYCWYRAADATRGTHAAHAGATG---- ----------KACGGGCTTAARAAACGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 81 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 81 Motif 233 Original Motif Original Motif CATCTGTAAAAT GTTAACTGTAAAACAGCCT GTYAWCTGTAAAAYAGCCT Direction: Forward Position #: 3 Overlap #: 12 Alignment: --CATCTGTAAAAT----- GTTAACTGTAAAACAGCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 303 Combined Motif Reverse Complement Reverse Complement AGGCTMTTTTACAGWTMAC ACCATCTTTAAGAACT AGGCTMTWYYAYMKTTAASAACT Direction: Forward Position #: 8 Overlap #: 12 Alignment: AGGCTMTTTTACAGWTMAC---- -------ACCATCTTTAAGAACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 325 Combined Motif Original Motif Reverse Complement AGGCTMTWYYAYMKTTAASAACT TATTTACAGCTGCT AGGCTMTWYTATHTWYARCWRCT Direction: Forward Position #: 10 Overlap #: 14 Alignment: AGGCTMTWYYAYMKTTAASAACT ---------TATTTACAGCTGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 346 Combined Motif Reverse Complement Original Motif AGMWGKTMWAHATAMWAYAGCCT AAATCTTAAAGCTC AGMWGKTMWAAATMWTAHAGCYY Direction: Forward Position #: 10 Overlap #: 14 Alignment: AGMWGKTMWAHATAMWAYAGCCT ---------AAATCTTAAAGCTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 280 Combined Motif Original Motif Reverse Complement AGMWGKTMWAAATMWTAHAGCYY ACATCMTCTGAAATCTAGG AGMWGKTMWAMATCHTMTRRMHTCTAGG Direction: Forward Position #: 10 Overlap #: 14 Alignment: AGMWGKTMWAAATMWTAHAGCYY----- ---------ACATCMTCTGAAATCTAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 82 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 82 Motif 100 Original Motif Reverse Complement GCTTAGCACCYGGGCCAGC CGCGGCGCTTGCGGGCCAGC GCKKMGCWYSCGGGCCAGCC Direction: Backward Position #: 1 Overlap #: 19 Alignment: -GCTTAGCACCYGGGCCAGC CGCGGCGCTTGCGGGCCAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 56 Combined Motif Original Motif Original Motif GCKKMGCWYSCGGGCCAGCC CRTGAGCCACYGYRCCYGGC GCKKMGCWYVYGRGCCASCSYRCCYGGC Direction: Forward Position #: 9 Overlap #: 12 Alignment: GCKKMGCWYSCGGGCCAGCC-------- --------CRTGAGCCACYGYRCCYGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 149 Combined Motif Original Motif Original Motif GCKKMGCWYVYGRGCCASCSYRCCYGGC ACTCAGCCCRCCTGCACCC GCKKMGCWYVYGASYCAGCCCRCCTGSMCCC Direction: Forward Position #: 13 Overlap #: 16 Alignment: GCKKMGCWYVYGRGCCASCSYRCCYGGC--- ------------ACTCAGCCCRCCTGCACCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 155 Combined Motif Original Motif Reverse Complement GCKKMGCWYVYGASYCAGCCCRCCTGSMCCC GCCKCCCCGTCCGGGAGGGA GCKKMGCWYVYGAGCCRSCCCGYCYGGVMSSGA Direction: Forward Position #: 14 Overlap #: 18 Alignment: GCKKMGCWYVYGASYCAGCCCRCCTGSMCCC-- -------------GCCKCCCCGTCCGGGAGGGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 171 Combined Motif Reverse Complement Original Motif TCSSYVCCKGMCGGGSKGGCTCMVKWGCYRRGC AAAAGTCCACAGTCCAAAGT TCSSYVCCKGMCGGRRARGYYCACRDKCCAARST Direction: Forward Position #: 15 Overlap #: 19 Alignment: TCSSYVCCKGMCGGGSKGGCTCMVKWGCYRRGC- --------------AAAAGTCCACAGTCCAAAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 83 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 83 Motif 86 Original Motif Original Motif AAAATGTGGTAYATAYAYAC AGTAGGTGCTCARTAAATRB ARWAKGTGSTMWATAHAYAY Direction: Backward Position #: 1 Overlap #: 20 Alignment: AAAATGTGGTAYATAYAYAC AGTAGGTGCTCARTAAATRB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 308 Combined Motif Original Motif Reverse Complement ARWAKGTGSTMWATAHAYAY GTTATTAATTGGCCTAATTT ARWAKGTGGTTAWTAAWTRBCCTAATTT Direction: Forward Position #: 9 Overlap #: 12 Alignment: ARWAKGTGSTMWATAHAYAY-------- --------GTTATTAATTGGCCTAATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 225 Combined Motif Original Motif Reverse Complement ARWAKGTGGTTAWTAAWTRBCCTAATTT AAGTTCTKGGKTACATGTGC ARWAKGTGGTTAAWRWTYKKSSTWAYWTGTGC Direction: Forward Position #: 13 Overlap #: 16 Alignment: ARWAKGTGGTTAWTAAWTRBCCTAATTT---- ------------AAGTTCTKGGKTACATGTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 254 Combined Motif Reverse Complement Original Motif GCACAWKTWASSYRKAWMWTTAACCACRTWKT AAAATCACAAGCATTCCTAT GCACAWKTWASSYRRAAATYWVAMSMMTTYYTAT Direction: Forward Position #: 15 Overlap #: 18 Alignment: GCACAWKTWASSYRKAWMWTTAACCACRTWKT-- --------------AAAATCACAAGCATTCCTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 178 Combined Motif Reverse Complement Reverse Complement ATAMKAAYRSYTVWKATTTKKKSSTWAYWTGTGC ATGTGGAGGTGGAAGACAGT ATAMKAAYRSYTVWKATKTKGDGGTDRMAKRYRST Direction: Forward Position #: 16 Overlap #: 19 Alignment: ATAMKAAYRSYTVWKATTTKKKSSTWAYWTGTGC- ---------------ATGTGGAGGTGGAAGACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 84 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 84 Motif 61 Original Motif Reverse Complement CTGGGTCCCCCAGCAGTGCC TGGCTTCACCCAGTGGATCC YKGSKTCMCCCAGYRGWKCC Direction: Forward Position #: 1 Overlap #: 20 Alignment: CTGGGTCCCCCAGCAGTGCC TGGCTTCACCCAGTGGATCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 29 Combined Motif Reverse Complement Original Motif GGRWCMMCTGGGRGAYSCYM CTGGGCRACAGAGYRAGACY GGRWCMMCYKGGGSAHCMBAGYRAGACY Direction: Forward Position #: 9 Overlap #: 12 Alignment: GGRWCMMCTGGGRGAYSCYM-------- --------CTGGGCRACAGAGYRAGACY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 67 Combined Motif Original Motif Original Motif GGRWCMMCYKGGGSAHCMBAGYRAGACY CTGGGCTCCTGAGTCTGGTG GGRWCMMCYKGGSTRGSCTMSTGAGWCTGGTG Direction: Forward Position #: 13 Overlap #: 16 Alignment: GGRWCMMCYKGGGSAHCMBAGYRAGACY---- ------------CTGGGCTCCTGAGTCTGGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 100 Combined Motif Reverse Complement Reverse Complement CACCAGWCTCASRAGSCMASCCRMGYRGWKCC CGCGGCGCTTGCGGGCCAGC CACCAGWCTCASRASSCVGSSCTHGCGGDBCMGC Direction: Forward Position #: 15 Overlap #: 18 Alignment: CACCAGWCTCASRAGSCMASCCRMGYRGWKCC-- --------------CGCGGCGCTTGCGGGCCAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 312 Combined Motif Original Motif Original Motif CACCAGWCTCASRASSCVGSSCTHGCGGDBCMGC AGGACTGAGGGTGCCYRGGG CACCAGWCTCASRASRSGRCTSAGGSKGBCCRGSG Direction: Forward Position #: 16 Overlap #: 19 Alignment: CACCAGWCTCASRASSCVGSSCTHGCGGDBCMGC- ---------------AGGACTGAGGGTGCCYRGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 85 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 85 Motif 58 Original Motif Original Motif CTAGACATAAAGGTTCTCCA ATGGACAYTTRGGTTGHTTC MTRGACATWWAGGTTSTYYM Direction: Backward Position #: 1 Overlap #: 20 Alignment: CTAGACATAAAGGTTCTCCA ATGGACAYTTRGGTTGHTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 332 Combined Motif Reverse Complement Original Motif YKKASAACCTWWATGTCKAR CTGGCCCTCAATGGTTAAAC YKKASAACCTGDMYSTCWATGGTTAAAC Direction: Forward Position #: 9 Overlap #: 12 Alignment: YKKASAACCTWWATGTCKAR-------- --------CTGGCCCTCAATGGTTAAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Reverse Complement Reverse Complement GTTTAACCATWGASKRHCAGGTTSTYYM TMGGGAGGCTGAGGCAGGAG GTTTAACCATWGWVKGBARGSTKVKBCMGGAG Direction: Forward Position #: 13 Overlap #: 16 Alignment: GTTTAACCATWGASKRHCAGGTTSTYYM---- ------------TMGGGAGGCTGAGGCAGGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 254 Combined Motif Original Motif Reverse Complement GTTTAACCATWGWVKGBARGSTKVKBCMGGAG ATAGGAATGCTTGTGATTTT GTTTAACCATWGWVDKADGRATGCTTSWGRWKTT Direction: Forward Position #: 15 Overlap #: 18 Alignment: GTTTAACCATWGWVKGBARGSTKVKBCMGGAG-- --------------ATAGGAATGCTTGTGATTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 262 Combined Motif Original Motif Reverse Complement GTTTAACCATWGWVDKADGRATGCTTSWGRWKTT GACAGGAGATTAACACTGAG GTTTAACCATWGWVDGACAGGWGMTTAASAHTKWG Direction: Forward Position #: 16 Overlap #: 19 Alignment: GTTTAACCATWGWVDKADGRATGCTTSWGRWKTT- ---------------GACAGGAGATTAACACTGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 86 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 86 Motif 83 Original Motif Original Motif AGTAGGTGCTCARTAAATRB AAAATGTGGTAYATAYAYAC ARWAKGTGSTMWATAHAYAY Direction: Backward Position #: 1 Overlap #: 20 Alignment: AGTAGGTGCTCARTAAATRB AAAATGTGGTAYATAYAYAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 137 Combined Motif Reverse Complement Reverse Complement KTMTHTATWRASCACRTWKT TWTACCTATGTAACAAACCT KTMTHTATTDWACMYATDTWACAAACCT Direction: Forward Position #: 9 Overlap #: 12 Alignment: KTMTHTATWRASCACRTWKT-------- --------TWTACCTATGTAACAAACCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 139 Combined Motif Reverse Complement Original Motif AGGTTTGTWAHATKYGTWDAATAHAYAY AGCCYCTGGYAACCAYYAWT AGGTTTGTWAHAWGCSYHTRRTAAMYAYYAWT Direction: Forward Position #: 13 Overlap #: 16 Alignment: AGGTTTGTWAHATKYGTWDAATAHAYAY---- ------------AGCCYCTGGYAACCAYYAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Reverse Complement Reverse Complement AWTKKTKRTTAMMADMSGCWTDTWACAAACCT ARCTCCTGKSCTCAAGKGAT AWTKKTKRTTAMMAAACKCHTGKDMYMAASBKAT Direction: Forward Position #: 15 Overlap #: 18 Alignment: AWTKKTKRTTAMMADMSGCWTDTWACAAACCT-- --------------ARCTCCTGKSCTCAAGKGAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 63 Combined Motif Reverse Complement Original Motif ATRBSTTRMYHRCADGRGTTTRRTAAMYAYYAWT AGTGAGAACATRYRRTRTTT ATRBSTTRMYHRCADRRKGAKAAYAWVYRVTRTTT Direction: Forward Position #: 16 Overlap #: 19 Alignment: ATRBSTTRMYHRCADGRGTTTRRTAAMYAYYAWT- ---------------AGTGAGAACATRYRRTRTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 87 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 87 Motif 206 Original Motif Original Motif CATGTGTGTCC GCTCCWGTGYGKCC CMTGTGYGTCCGCT Direction: Backward Position #: 1 Overlap #: 11 Alignment: ---CATGTGTGTCC GCTCCWGTGYGKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 120 Combined Motif Original Motif Reverse Complement CMTGTGYGTCCGCT GGGASCACATGG CMTGTGGGWCCRCWTGG Direction: Forward Position #: 6 Overlap #: 9 Alignment: CMTGTGYGTCCGCT--- -----GGGASCACATGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Reverse Complement Reverse Complement CCAWGMGGWCCCACARG GGRRMCAGATGT CCAWGMGGDVVCASAKGT Direction: Forward Position #: 7 Overlap #: 11 Alignment: CCAWGMGGWCCCACARG- ------GGRRMCAGATGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 310 Reverse Complement Original Motif ACRTSTGVVDCCRCWTGG CCCATGCAAGTCYRAAATCC CCCATGCAASTYYKRAATCCRCWTGG Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------ACRTSTGVVDCCRCWTGG CCCATGCAAGTCYRAAATCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 293 Combined Motif Reverse Complement Reverse Complement CCAWGMGGATTKRKMASTTGCATGGG GGGAGGTGTCTCCCAGTCAG CCAWGMGGATTGGGMRGTKKCWYSSRGTCAG Direction: Forward Position #: 12 Overlap #: 15 Alignment: CCAWGMGGATTKRKMASTTGCATGGG----- -----------GGGAGGTGTCTCCCAGTCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 88 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 88 Motif 62 Original Motif Reverse Complement ACCGGGGCTGCA GTAGACKGGAGCTGTTCCT GTARMCGGGRSYKSWTCCT Direction: Forward Position #: 4 Overlap #: 12 Alignment: ---ACCGGGGCTGCA---- GTAGACKGGAGCTGTTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 17 Combined Motif Reverse Complement Reverse Complement AGGAWSYKSKCCCGRKTAC TGHCCTGCKCCCACTGTCT AGGAWSYTGKCCTGVKYMCACTGTCT Direction: Forward Position #: 8 Overlap #: 12 Alignment: AGGAWSYKSKCCCGRKTAC------- -------TGHCCTGCKCCCACTGTCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 312 Combined Motif Original Motif Reverse Complement AGGAWSYTGKCCTGVKYMCACTGTCT CCCMKGGCACCCTCAGTCCT AGGAWSYTGKCCYSMKBVCACYSTCWGTCCT Direction: Forward Position #: 12 Overlap #: 15 Alignment: AGGAWSYTGKCCTGVKYMCACTGTCT----- -----------CCCMKGGCACCCTCAGTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 68 Combined Motif Reverse Complement Original Motif AGGACWGASMGTGVBYRSKGGRCAKSWTCCT CATGGCGGGCTGCAGGTC AGGACWGASMGTGCHTGGBGGGCWGCAKSYY Direction: Forward Position #: 14 Overlap #: 18 Alignment: AGGACWGASMGTGVBYRSKGGRCAKSWTCCT -------------CATGGCGGGCTGCAGGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 177 Combined Motif Original Motif Original Motif AGGACWGASMGTGCHTGGBGGGCWGCAKSYY CCCGAAGCTGCRYRCTCGGT AGGACWGASMGTGCCYGRVGSKSHGCRBBYBGT Direction: Forward Position #: 14 Overlap #: 18 Alignment: AGGACWGASMGTGCHTGGBGGGCWGCAKSYY-- -------------CCCGAAGCTGCRYRCTCGGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 89 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 89 Motif 105 Original Motif Reverse Complement GGCTGCGGAGGGTGTA GGAGGTGTGGAGGGAGAGGC GGRGSTGYGGAGGGWGWRGC Direction: Forward Position #: 3 Overlap #: 16 Alignment: --GGCTGCGGAGGGTGTA-- GGAGGTGTGGAGGGAGAGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 67 Combined Motif Reverse Complement Original Motif GCMWCWCCCTCCMCASCKCC CTGGGCTCCTGAGTCTGGTG GCMWCWCCCTSSRCWCCTSMGTCTGGTG Direction: Forward Position #: 9 Overlap #: 12 Alignment: GCMWCWCCCTCCMCASCKCC-------- --------CTGGGCTCCTGAGTCTGGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 61 Combined Motif Reverse Complement Original Motif CACCAGACYSAGGWGMSSAGGGWGWRGC GGATCCACTGGGTGAAGCCA CACCAGACYSAGGDRHCCASKGDGTGRMGCCA Direction: Forward Position #: 13 Overlap #: 16 Alignment: CACCAGACYSAGGWGMSSAGGGWGWRGC---- ------------GGATCCACTGGGTGAAGCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 191 Combined Motif Reverse Complement Original Motif TGGCYKCACHCRSTGGHKHCCTSMGTCTGGTG AAAGTGCCGAGAKTGCAGC TGGCYKCACHCRSTRRAGTSCYSAGWYTGSWGC Direction: Forward Position #: 15 Overlap #: 18 Alignment: TGGCYKCACHCRSTGGHKHCCTSMGTCTGGTG- --------------AAAGTGCCGAGAKTGCAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Reverse Complement Reverse Complement GCWSCAKWCTSMGSACTKKASKGDGTGRMGCCA TMGGGAGGCTGAGGCAGGAG GCWSCAKWCTSMGSWCKKKAGGSTGWGGMRSSAG Direction: Forward Position #: 15 Overlap #: 19 Alignment: GCWSCAKWCTSMGSACTKKASKGDGTGRMGCCA- --------------TMGGGAGGCTGAGGCAGGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 90 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 90 Motif 193 Reverse Complement Original Motif KGCAATGGGG ATACAATGGGGGTACAGRC GTACAGRCTRCAATGGGGA Direction: Backward Position #: 9 Overlap #: 10 Alignment: -KGCAATGGGG-------- ATACAATGGGGGTACAGRC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 196 Reverse Complement Original Motif TCCCCATTGKAGKCTGTAC CCTGCCATTGCYSAGGCTTG CCTGCCATTSCCCAKKSTWGKCTGTAC Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------TCCCCATTGKAGKCTGTAC CCTGCCATTGCYSAGGCTTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 247 Combined Motif Reverse Complement Reverse Complement GTACAGRCWASRRTGGGSAATGGCAGG GKGGCAGTGAGGC GTACAGRCWASGDKGSRGWRWGGCAGG Direction: Forward Position #: 12 Overlap #: 13 Alignment: GTACAGRCWASRRTGGGSAATGGCAGG -----------GKGGCAGTGAGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Original Motif GTACAGRCWASGDKGSRGWRWGGCAGG GCTGGAGTGCAGTGGCRYGA GTACAGRCWASGBTGGAGTGHRGYRGSRYGA Direction: Forward Position #: 12 Overlap #: 16 Alignment: GTACAGRCWASGDKGSRGWRWGGCAGG---- -----------GCTGGAGTGCAGTGGCRYGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 136 Combined Motif Original Motif Reverse Complement GTACAGRCWASGBTGGAGTGHRGYRGSRYGA CCCCGGGCAGTGAGGG GTACAGRCWASGBYSSMGKGCAGTGRGGSGA Direction: Forward Position #: 14 Overlap #: 16 Alignment: GTACAGRCWASGBTGGAGTGHRGYRGSRYGA -------------CCCCGGGCAGTGAGGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 91 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 91 Motif 175 Original Motif Reverse Complement AGACYCYGTCTCAA GCACTCTGTMTCTAGCT GCTRSACTCTGTCTCWA Direction: Backward Position #: 4 Overlap #: 14 Alignment: AGACYCYGTCTCAA--- GCACTCTGTMTCTAGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 160 Original Motif Original Motif GCTRSACTCTGTCTCWA AAATTACCCAGTCTCAGGTA AAATTACSCWGBMYYMKGTMTCWA Direction: Forward Position #: 8 Overlap #: 13 Alignment: -------GCTRSACTCTGTCTCWA AAATTACCCAGTCTCAGGTA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 85 Combined Motif Reverse Complement Original Motif TWGAYACYRKMYVCWGSGTAATTT CTAGACATAAAGGTTCTCCA TWGAYACYRKCTASASVKWAAKKTTCTCCA Direction: Forward Position #: 11 Overlap #: 14 Alignment: TWGAYACYRKMYVCWGSGTAATTT------ ----------CTAGACATAAAGGTTCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 99 Combined Motif Reverse Complement Original Motif TGGAGAARYTTWRBSTSTAGYMKGTMTCWA GCAAAKGACATGATYTCATT TGGAGAARYTTWRKCWAWDGHCDKKATCTMATT Direction: Forward Position #: 14 Overlap #: 17 Alignment: TGGAGAARYTTWRBSTSTAGYMKGTMTCWA--- -------------GCAAAKGACATGATYTCATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 76 Combined Motif Original Motif Reverse Complement TGGAGAARYTTWRKCWAWDGHCDKKATCTMATT CMTAGYACAGTGCCTGGCAC TGGAGAARYTTWRKCMDAGBACAGTRYCTVRYWC Direction: Forward Position #: 15 Overlap #: 19 Alignment: TGGAGAARYTTWRKCWAWDGHCDKKATCTMATT- --------------CMTAGYACAGTGCCTGGCAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 92 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 92 Motif 52 Original Motif Original Motif GGGGGCTGACCCCCCCACC GACTGGCAGGCAGCTCCACC GRSKGGCWGRCMSCYCCACC Direction: Forward Position #: 2 Overlap #: 19 Alignment: -GGGGGCTGACCCCCCCACC GACTGGCAGGCAGCTCCACC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 293 Combined Motif Reverse Complement Reverse Complement GGTGGMGSYGKCWGCCYSMC GGGAGGTGTCTCCCAGTCAG GGTGGMGSBGGMDGYSTCHCCCAGTCAG Direction: Forward Position #: 9 Overlap #: 12 Alignment: GGTGGMGSYGKCWGCCYSMC-------- --------GGGAGGTGTCTCCCAGTCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 178 Combined Motif Reverse Complement Original Motif CTGACTGGGHGASKCHRCCBSCYCCACC ACTGTCTTCCACCTCCACAT CTGACTGGGHGAVBYVKCYTCCHCCWCCACAT Direction: Forward Position #: 13 Overlap #: 16 Alignment: CTGACTGGGHGASKCHRCCBSCYCCACC---- ------------ACTGTCTTCCACCTCCACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 350 Combined Motif Reverse Complement Reverse Complement ATGTGGWGGHGGAMGRVMBBTCHCCCAGTCAG TGCTGGAGGTCCACTCCAGA ATGTGGWGGHGGAMKGCHGGWSDYCCASTCMRGA Direction: Forward Position #: 15 Overlap #: 18 Alignment: ATGTGGWGGHGGAMGRVMBBTCHCCCAGTCAG-- --------------TGCTGGAGGTCCACTCCAGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 96 Combined Motif Original Motif Reverse Complement ATGTGGWGGHGGAMKGCHGGWSDYCCASTCMRGA GGAGCCGGCTCCCTCAGCTT ATGTGGWGGHGGAMKGSAGSMGGCYCMCTCAGSWT Direction: Forward Position #: 16 Overlap #: 19 Alignment: ATGTGGWGGHGGAMKGCHGGWSDYCCASTCMRGA- ---------------GGAGCCGGCTCCCTCAGCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 93 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 93 Motif 128 Original Motif Reverse Complement CCATGTGCGG CMGCTCCGAGTGCGG CCRWGTGCGGCMGCT Direction: Backward Position #: 1 Overlap #: 10 Alignment: -----CCATGTGCGG CMGCTCCGAGTGCGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Original Motif Reverse Complement CCRWGTGCGGCMGCT GTACCTCAGWTGGAAATG GTACCTCMGWKKGMRRYSGCT Direction: Forward Position #: 7 Overlap #: 12 Alignment: ------CCRWGTGCGGCMGCT GTACCTCAGWTGGAAATG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 120 Combined Motif Original Motif Reverse Complement GTACCTCMGWKKGMRRYSGCT GGGASCACATGG GTACCTCMGRKDGCAMHBGST Direction: Forward Position #: 9 Overlap #: 12 Alignment: GTACCTCMGWKKGMRRYSGCT --------GGGASCACATGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 324 Combined Motif Reverse Complement Reverse Complement ASCVHRTGCDYMCYGAGGTAC TACAGGTGCGT ASCVHRTGYACASBKRSGTAC Direction: Forward Position #: 9 Overlap #: 11 Alignment: ASCVHRTGCDYMCYGAGGTAC --------TACAGGTGCGT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 257 Combined Motif Reverse Complement Original Motif GTACSKYBSTGTMCAMHBGST GAGAACACATGGACA GTACSKYBGWGWACACATGGWCA Direction: Forward Position #: 9 Overlap #: 13 Alignment: GTACSKYBSTGTMCAMHBGST-- --------GAGAACACATGGACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 94 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 94 Motif 333 Reverse Complement Original Motif GMTTAGCTCCCACTTA TAGATAATAGCTCCAGCTTT KAWTAGCTCCMRCTTWTAGA Direction: Backward Position #: 1 Overlap #: 16 Alignment: ----GMTTAGCTCCCACTTA TAGATAATAGCTCCAGCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 306 Combined Motif Reverse Complement Reverse Complement TCTAWAAGKYGGAGCTAWTR CAAGCGCCAGCTCATGTC TCTAWAAGBHRGMGCYADYWCATGTC Direction: Forward Position #: 9 Overlap #: 12 Alignment: TCTAWAAGKYGGAGCTAWTR------ --------CAAGCGCCAGCTCATGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 293 Combined Motif Reverse Complement Reverse Complement GACATGWKHTKGCYCKHBCTTWTAGA GGGAGGTGTCTCCCAGTCAG GACATGWKHTKGSKMGDTSTYTYMSAGTCAG Direction: Forward Position #: 12 Overlap #: 15 Alignment: GACATGWKHTKGCYCKHBCTTWTAGA----- -----------GGGAGGTGTCTCCCAGTCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 284 Combined Motif Reverse Complement Original Motif CTGACTSYMAKASAHCRYSCYADYWCATGTC CATTTGGGAGCCCATTGA CTGACTSYMAKASMAYDTGSBAGCHCATKKM Direction: Forward Position #: 14 Overlap #: 18 Alignment: CTGACTSYMAKASAHCRYSCYADYWCATGTC -------------CATTTGGGAGCCCATTGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 17 Combined Motif Original Motif Original Motif CTGACTSYMAKASMAYDTGSBAGCHCATKKM AGACAGTGGGYGCAGGHCA CTGACTSYMAKASARWCWGTGRGYGCAKGDCA Direction: Forward Position #: 14 Overlap #: 18 Alignment: CTGACTSYMAKASMAYDTGSBAGCHCATKKM- -------------AGACAGTGGGYGCAGGHCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 95 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 95 Motif 27 Reverse Complement Original Motif CACCTCCCAGACMGGGT CACTTCCCAGACGGGGCG MMYYYCCMRRMSGGGSKC Direction: Backward Position #: 1 Overlap #: 17 Alignment: -CACCTCCCAGACMGGGT CACTTCCCAGACGGGGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 45 Combined Motif Original Motif Original Motif MMYYYCCMRRMSGGGSKC TGCCCAGTCTGGAAAGTG MMYYYCCHGVCCAGKCTSGAAAGTG Direction: Forward Position #: 8 Overlap #: 11 Alignment: MMYYYCCMRRMSGGGSKC------- -------TGCCCAGTCTGGAAAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 155 Combined Motif Original Motif Original Motif MMYYYCCHGVCCAGKCTSGAAAGTG TCCCTCCCGGACGGGGYGGC MMYYYCCHGVYCMSTCYCGRAMGKGGYGGC Direction: Forward Position #: 11 Overlap #: 15 Alignment: MMYYYCCHGVCCAGKCTSGAAAGTG----- ----------TCCCTCCCGGACGGGGYGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 202 Combined Motif Reverse Complement Original Motif GCCKCCRCYTMCGKGASRGMVCHGGKMMRY ACACATCACAAAGCAGTTTC GCCKCCRCYTMCGDSACAKCACARRGMAGTTTC Direction: Forward Position #: 14 Overlap #: 17 Alignment: GCCKCCRCYTMCGKGASRGMVCHGGKMMRY--- -------------ACACATCACAAAGCAGTTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 242 Combined Motif Original Motif Reverse Complement GCCKCCRCYTMCGDSACAKCACARRGMAGTTTC CMCAGTTCACAATAGGGTT GCCKCCRCYTMCGDCACAGYWCAVARYAGKKTY Direction: Forward Position #: 15 Overlap #: 19 Alignment: GCCKCCRCYTMCGDSACAKCACARRGMAGTTTC --------------CMCAGTTCACAATAGGGTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 96 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 96 Motif 13 Original Motif Original Motif AAGCTGAGGGAGCCGGCTCC AAGCAGGGCGAGGCATTGCC AAGCWGRGSGAGSCRKYKCC Direction: Forward Position #: 1 Overlap #: 20 Alignment: AAGCTGAGGGAGCCGGCTCC AAGCAGGGCGAGGCATTGCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 108 Combined Motif Original Motif Original Motif AAGCWGRGSGAGSCRKYKCC CGAGCCTCCCCGAYGAGCGC AAGCWGRGSGAGCCWYCBCSAYGAGCGC Direction: Forward Position #: 9 Overlap #: 12 Alignment: AAGCWGRGSGAGSCRKYKCC-------- --------CGAGCCTCCCCGAYGAGCGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 333 Combined Motif Reverse Complement Reverse Complement GCGCTCKTSGBGKWGGCTCSCKCWGCTT AAAGCTGGAGCTATTATCTA GCGCTCKTSGBGDARGCTSGMGCTRYTWTCTA Direction: Forward Position #: 13 Overlap #: 16 Alignment: GCGCTCKTSGBGKWGGCTCSCKCWGCTT---- ------------AAAGCTGGAGCTATTATCTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 225 Combined Motif Reverse Complement Original Motif TAGAWAMKAGCYCSAGCMTDCBCSAYGAGCGC GCACATGTAYCCYAGAACTT TAGAWAMKAGCYCSRSMCWTSTMYMCBAGMRCTT Direction: Forward Position #: 15 Overlap #: 18 Alignment: TAGAWAMKAGCYCSAGCMTDCBCSAYGAGCGC-- --------------GCACATGTAYCCYAGAACTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 178 Combined Motif Reverse Complement Original Motif AAGKYCTBGYKYASAWGYSKSGMGCTRYTWTCTA ACTGTCTTCCACCTCCACAT AAGKYCTBGYKYASAASTGTCKHSCWVCTHYMYAT Direction: Forward Position #: 16 Overlap #: 19 Alignment: AAGKYCTBGYKYASAWGYSKSGMGCTRYTWTCTA- ---------------ACTGTCTTCCACCTCCACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 97 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 97 Motif 35 Original Motif Reverse Complement AAGATGGCCGAAT AAGACGGGTGATTTCTG MRGRTGRYYKMWKAAGA Direction: Backward Position #: 1 Overlap #: 13 Alignment: ----AAGATGGCCGAAT AAGACGGGTGATTTCTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 308 Original Motif Reverse Complement MRGRTGRYYKMWKAAGA GTTATTAATTGGCCTAATTT GTTATTAADKGKSVTHAHTTAAGA Direction: Forward Position #: 8 Overlap #: 13 Alignment: -------MRGRTGRYYKMWKAAGA GTTATTAATTGGCCTAATTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 149 Combined Motif Original Motif Reverse Complement GTTATTAADKGKSVTHAHTTAAGA GGGTGCAGGMGGGCTGAGT GTTATTAADKGGGHKCABKHRRGMTGAGT Direction: Forward Position #: 11 Overlap #: 14 Alignment: GTTATTAADKGKSVTHAHTTAAGA----- ----------GGGTGCAGGMGGGCTGAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 18 Combined Motif Original Motif Reverse Complement GTTATTAADKGGGHKCABKHRRGMTGAGT CCCYAATACTGCGCTTTTC GTTATTAADKGGSCCYAATAMDGCKSWKTTC Direction: Forward Position #: 13 Overlap #: 17 Alignment: GTTATTAADKGGGHKCABKHRRGMTGAGT-- ------------CCCYAATACTGCGCTTTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 309 Combined Motif Reverse Complement Reverse Complement GAAYWSRGCDRTATTKGGSCCRDTTAATAAC MTCCTCCAGACCCCAGAATG GAAYWSRGCDRTAHTBCKCCMGAYYMMWRAMTG Direction: Forward Position #: 14 Overlap #: 18 Alignment: GAAYWSRGCDRTATTKGGSCCRDTTAATAAC-- -------------MTCCTCCAGACCCCAGAATG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 98 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 98 Motif 122 Original Motif Reverse Complement AGTTCCGGGTGGGCGTGGG CTTTCTGGGCTGGCCAAGG MKTTCYGGGYKGGCSWRGG Direction: Backward Position #: 1 Overlap #: 19 Alignment: AGTTCCGGGTGGGCGTGGG CTTTCTGGGCTGGCCAAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 312 Original Motif Original Motif MKTTCYGGGYKGGCSWRGG AGGACTGAGGGTGCCYRGGG AGGACTGARGKTSCSSGBGGGCSWRGG Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------MKTTCYGGGYKGGCSWRGG AGGACTGAGGGTGCCYRGGG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 176 Combined Motif Reverse Complement Reverse Complement CCKWSGCCCBCSSGSAYCMTCAGTCCT AACAACASACACTGGGGCCT CCKWSGCCCBCMASRACMSWCASTSSKGCCT Direction: Forward Position #: 12 Overlap #: 16 Alignment: CCKWSGCCCBCSSGSAYCMTCAGTCCT---- -----------AACAACASACACTGGGGCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 321 Combined Motif Original Motif Original Motif CCKWSGCCCBCMASRACMSWCASTSSKGCCT AAGCTCGAACTGGGTGGAGC CCKWSGCCCBCMAAARCTCDMACTGGGKSSWGC Direction: Forward Position #: 14 Overlap #: 18 Alignment: CCKWSGCCCBCMASRACMSWCASTSSKGCCT-- -------------AAGCTCGAACTGGGTGGAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 149 Combined Motif Reverse Complement Reverse Complement GCWSSRCCCAGTYDGAGMTTTYGBGGGCSWRGG GGGTGCAGGMGGGCTGAGT GCWSSRCCCAGTYDGRGTKCWGGVGGGCBGAGK Direction: Forward Position #: 15 Overlap #: 19 Alignment: GCWSSRCCCAGTYDGAGMTTTYGBGGGCSWRGG --------------GGGTGCAGGMGGGCTGAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 99 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 99 Motif 63 Reverse Complement Original Motif AATGAKATCATGTCYTTTGC AGTGAGAACATRYRRTRTTT ARTGAGAWCATGTSVTKTKY Direction: Backward Position #: 1 Overlap #: 20 Alignment: AATGAKATCATGTCYTTTGC AGTGAGAACATRYRRTRTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Combined Motif Reverse Complement Reverse Complement MRARAVSACATGWTCTCAKT MGGGATATAATCTCCTGGTG MRARAVSACRKGATMTMATYTCCTGGTG Direction: Forward Position #: 9 Overlap #: 12 Alignment: MRARAVSACATGWTCTCAKT-------- --------MGGGATATAATCTCCTGGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 145 Combined Motif Reverse Complement Reverse Complement CACCAGGAKATYAYATCYKGTSVTKTKY TYTGTCMTTTTGTGACTGGC CACCAGGAKATYWYWKYCHKTBTKTKDCTGGC Direction: Forward Position #: 13 Overlap #: 16 Alignment: CACCAGGAKATYAYATCYKGTSVTKTKY---- ------------TYTGTCMTTTTGTGACTGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 177 Combined Motif Original Motif Reverse Complement CACCAGGAKATYWYWKYCHKTBTKTKDCTGGC ACCGAGMKMGCAGCTTCGGG CACCAGGAKATYWYABCBAGYKHKYDGCTKSSGG Direction: Forward Position #: 15 Overlap #: 18 Alignment: CACCAGGAKATYWYWKYCHKTBTKTKDCTGGC-- --------------ACCGAGMKMGCAGCTTCGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 13 Combined Motif Reverse Complement Reverse Complement CCSSRAGCDKYDYMCTBGBTMWMATYTCCTGGTG GGCAATGCCTCGCCCTGCTT CCSSRAGCDKYDYMCGGSVATGCMTCKCCYKGYKT Direction: Forward Position #: 16 Overlap #: 19 Alignment: CCSSRAGCDKYDYMCTBGBTMWMATYTCCTGGTG- ---------------GGCAATGCCTCGCCCTGCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 100 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 100 Motif 64 Reverse Complement Reverse Complement CGCGGCGCTTGCGGGCCAGC KCCGGGCCTTAGCTGCCTTC BSCGGSSCTTRSSKGCCWKC Direction: Backward Position #: 1 Overlap #: 20 Alignment: CGCGGCGCTTGCGGGCCAGC KCCGGGCCTTAGCTGCCTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Reverse Complement BSCGGSSCTTRSSKGCCWKC TCKMGCCACTGCACTCCAGC BSCGGSSCTYGCSBSMCTGCACTCCAGC Direction: Forward Position #: 9 Overlap #: 12 Alignment: BSCGGSSCTTRSSKGCCWKC-------- --------TCKMGCCACTGCACTCCAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 52 Combined Motif Reverse Complement Reverse Complement GCTGGAGTGCAGRSBSGCMAGSSCCGSB GGTGGAGCTGCCTGCCAGTC GCTGGAGTGCAGGGTGGAGMKGCCYGCCAGTC Direction: Forward Position #: 13 Overlap #: 16 Alignment: GCTGGAGTGCAGRSBSGCMAGSSCCGSB---- ------------GGTGGAGCTGCCTGCCAGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 84 Combined Motif Original Motif Original Motif GCTGGAGTGCAGGGTGGAGMKGCCYGCCAGTC CTGGGTCCCCCAGCAGTGCC GCTGGAGTGCAGGGYKGRGHBSCCCRSCAGTSCC Direction: Forward Position #: 15 Overlap #: 18 Alignment: GCTGGAGTGCAGGGTGGAGMKGCCYGCCAGTC-- --------------CTGGGTCCCCCAGCAGTGCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 155 Combined Motif Reverse Complement Reverse Complement GGSACTGSKGGGSBHCMCRKCCCTGCACTCCAGC GCCKCCCCGTCCGGGAGGGA GGSACTGSKGGGSBHSCCDCCCCKKCMSKSMRGSA Direction: Forward Position #: 16 Overlap #: 19 Alignment: GGSACTGSKGGGSBHCMCRKCCCTGCACTCCAGC- ---------------GCCKCCCCGTCCGGGAGGGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 101 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 101 Motif 266 Reverse Complement Original Motif GCGGCGGCGGCG GCAGCAGCAGCA GCRGCRGCRGCR Direction: Backward Position #: 1 Overlap #: 12 Alignment: GCGGCGGCGGCG GCAGCAGCAGCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 100 Original Motif Original Motif GCRGCRGCRGCR GCTGGCCCGCAAGCGCCGCG GCTGGSCVGCARSVGCVGCG Direction: Forward Position #: 6 Overlap #: 12 Alignment: -----GCRGCRGCRGCR--- GCTGGCCCGCAAGCGCCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 39 Combined Motif Reverse Complement Original Motif CGCVGCVSKTGCVGSCCAGC AGGCGGCTGGGAGG CGCVGCVSAKGCGGCYSRGMGG Direction: Forward Position #: 9 Overlap #: 12 Alignment: CGCVGCVSKTGCVGSCCAGC-- --------AGGCGGCTGGGAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 286 Combined Motif Reverse Complement Reverse Complement CCYCKSKGCCGCYTSVGCVGCG CTCCCAGCCGCCTG CCYCKSKGCCKCCBVGSCGSCKG Direction: Forward Position #: 10 Overlap #: 13 Alignment: CCYCKSKGCCGCYTSVGCVGCG- ---------CTCCCAGCCGCCTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 229 Combined Motif Reverse Complement Reverse Complement CRGSCGSCBBGGRGGCYSRGMGG GCGGCAGCAAGGC CRGSCGSCBGSGGSRSCVAGRSG Direction: Forward Position #: 10 Overlap #: 13 Alignment: CRGSCGSCBBGGRGGCYSRGMGG ---------GCGGCAGCAAGGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 102 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 102 Motif 310 Original Motif Original Motif CTCATTTAATCCTCACAAC CCCATGCAAGTCYRAAATCC CCYCATKYAAKYCTVAMAWC Direction: Backward Position #: 2 Overlap #: 19 Alignment: CTCATTTAATCCTCACAAC- CCCATGCAAGTCYRAAATCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 309 Combined Motif Original Motif Original Motif CCYCATKYAAKYCTVAMAWC CATTCTGGGGTCTGGAGGAY CCYCATKYMATTCTGRVRTCTGGAGGAY Direction: Forward Position #: 9 Overlap #: 12 Alignment: CCYCATKYAAKYCTVAMAWC-------- --------CATTCTGGGGTCTGGAGGAY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Reverse Complement Reverse Complement MTCCTCCAGAKVKCAGAATYKYATGMGG ARCTCCTGKSCTCAAGKGAT MTCCTCCAGAKVDVMKMMTBKBMTSARGKGAT Direction: Forward Position #: 13 Overlap #: 16 Alignment: MTCCTCCAGAKVKCAGAATYKYATGMGG---- ------------ARCTCCTGKSCTCAAGKGAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 178 Combined Motif Reverse Complement Reverse Complement ATCRCMTSAYBYBARRRRBDVRTCTGGAGGAY ATGTGGAGGTGGAAGACAGT ATCRCMTSAYBYBAAKGDGGAGKYKGRAGRMWGT Direction: Forward Position #: 15 Overlap #: 18 Alignment: ATCRCMTSAYBYBARRRRBDVRTCTGGAGGAY-- --------------ATGTGGAGGTGGAAGACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Reverse Complement ATCRCMTSAYBYBAAKGDGGAGKYKGRAGRMWGT TTTYTWTTTTTTYTWGAGAC ATCRCMTSAYBYBAATKTBTWKTTTKDWKDVAGWC Direction: Forward Position #: 16 Overlap #: 19 Alignment: ATCRCMTSAYBYBAAKGDGGAGKYKGRAGRMWGT- ---------------TTTYTWTTTTTTYTWGAGAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 103 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 103 Motif 24 Original Motif Original Motif AAGTGAAATAA CKAGTCAAAGAAA CWAGTSAAAKAAA Direction: Forward Position #: 2 Overlap #: 11 Alignment: -AAGTGAAATAA- CKAGTCAAAGAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 281 Combined Motif Original Motif Original Motif CWAGTSAAAKAAA AAATGGAATCAT CWAGWVAWRGAAWCAT Direction: Forward Position #: 5 Overlap #: 9 Alignment: CWAGTSAAAKAAA--- ----AAATGGAATCAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 23 Original Motif Original Motif CWAGWVAWRGAAWCAT GGTTCATCTCACTAGGGAGT GGTTCATCTMRHHADGGARTCAT Direction: Forward Position #: 8 Overlap #: 13 Alignment: -------CWAGWVAWRGAAWCAT GGTTCATCTCACTAGGGAGT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 129 Combined Motif Reverse Complement Reverse Complement ATGAKTCCHTHDKRAGATGAACC TGAGKCAATTAAACCTCTT ATGAKTCCHTDAGDMRATKAAMCCTCTT Direction: Forward Position #: 10 Overlap #: 14 Alignment: ATGAKTCCHTHDKRAGATGAACC----- ---------TGAGKCAATTAAACCTCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Original Motif Original Motif ATGAKTCCHTDAGDMRATKAAMCCTCTT GAAAGGGAACTCCCTGACCC ATGAKTCCHTDAGAAARKGAACYCYCTKACCC Direction: Forward Position #: 13 Overlap #: 16 Alignment: ATGAKTCCHTDAGDMRATKAAMCCTCTT---- ------------GAAAGGGAACTCCCTGACCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 104 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 104 Motif 26 Reverse Complement Original Motif CTCCAGKTMCATCCATGTTG CTCCTGCCTCAGCCTCCCRA CTCCWGYYHCAKCCWYSTKR Direction: Backward Position #: 1 Overlap #: 20 Alignment: CTCCAGKTMCATCCATGTTG CTCCTGCCTCAGCCTCCCRA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 139 Combined Motif Original Motif Original Motif CTCCWGYYHCAKCCWYSTKR AGCCYCTGGYAACCAYYAWT CTCCWGYYASMBCCTBGYAACCAYYAWT Direction: Forward Position #: 9 Overlap #: 12 Alignment: CTCCWGYYHCAKCCWYSTKR-------- --------AGCCYCTGGYAACCAYYAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 262 Combined Motif Original Motif Original Motif CTCCWGYYASMBCCTBGYAACCAYYAWT CTCAGTGTTAATCTCCTGTC CTCCWGYYASMBCYYAGTRWYMATCWYYTGTC Direction: Forward Position #: 13 Overlap #: 16 Alignment: CTCCWGYYASMBCCTBGYAACCAYYAWT---- ------------CTCAGTGTTAATCTCCTGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 202 Combined Motif Reverse Complement Original Motif GACAMKWGATYMWMACTKMGBYSTMKCWGGAG ACACATCACAAAGCAGTTTC GACAMKWGATYMWMACWBAKCWCWADSYRGWKTC Direction: Forward Position #: 15 Overlap #: 18 Alignment: GACAMKWGATYMWMACTKMGBYSTMKCWGGAG-- --------------ACACATCACAAAGCAGTTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 83 Combined Motif Original Motif Reverse Complement GACAMKWGATYMWMACWBAKCWCWADSYRGWKTC GTKTMTATMTACCACATTTT GACAMKWGATYMWMASTBWDYAYAWACCASATTYT Direction: Forward Position #: 16 Overlap #: 19 Alignment: GACAMKWGATYMWMACWBAKCWCWADSYRGWKTC- ---------------GTKTMTATMTACCACATTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 105 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 105 Motif 52 Reverse Complement Reverse Complement GGAGGTGTGGAGGGAGAGGC GGTGGAGCTGCCTGCCAGTC GGWGGWGYKGMSKGMSAGKC Direction: Backward Position #: 1 Overlap #: 20 Alignment: GGAGGTGTGGAGGGAGAGGC GGTGGAGCTGCCTGCCAGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Reverse Complement GRCTSYCRSYCRMCWCCWCC TCKMGCCACTGCACTCCAGC GRCTSYCRBCSVVCHMCTSCACTCCAGC Direction: Forward Position #: 9 Overlap #: 12 Alignment: GRCTSYCRSYCRMCWCCWCC-------- --------TCKMGCCACTGCACTCCAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 64 Combined Motif Original Motif Reverse Complement GRCTSYCRBCSVVCHMCTSCACTCCAGC KCCGGGCCTTAGCTGCCTTC GRCTSYCRBCSVBCCVSKCCWYWSCWGCCTTC Direction: Forward Position #: 13 Overlap #: 16 Alignment: GRCTSYCRBCSVVCHMCTSCACTCCAGC---- ------------KCCGGGCCTTAGCTGCCTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 294 Combined Motif Reverse Complement Original Motif GAAGGCWGSWMWGGYSVGGBBSGVKGMSAGKC AGCTGTGAGAAGAGGGCCAC GAAGGCWGSWMWGGAGCKGTGAGADGAGRGYCAC Direction: Forward Position #: 15 Overlap #: 18 Alignment: GAAGGCWGSWMWGGYSVGGBBSGVKGMSAGKC-- --------------AGCTGTGAGAAGAGGGCCAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 165 Combined Motif Reverse Complement Reverse Complement GTGKCKCTCDTCTCACRGCTCCWYWSCWGCCTTC AGCTCMKCCTCCTGTCAGAT GTGKCKCTCDTCTCAMGSYCCSHCTCCTGYCWKMT Direction: Forward Position #: 16 Overlap #: 19 Alignment: GTGKCKCTCDTCTCACRGCTCCWYWSCWGCCTTC- ---------------AGCTCMKCCTCCTGTCAGAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 106 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 106 Motif 333 Reverse Complement Original Motif GGGATTGTAAATACACCAAT TAGATAATAGCTCCAGCTTT KRGATWRTARMTMCASCWWT Direction: Backward Position #: 1 Overlap #: 20 Alignment: GGGATTGTAAATACACCAAT TAGATAATAGCTCCAGCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 137 Combined Motif Reverse Complement Original Motif AWWGSTGRAYMTAKWATCMR AGGTTTGTTACATAGGTAWA AWWGSTGRABVTWTDWTMCATAGGTAWA Direction: Forward Position #: 9 Overlap #: 12 Alignment: AWWGSTGRAYMTAKWATCMR-------- --------AGGTTTGTTACATAGGTAWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 84 Combined Motif Original Motif Reverse Complement AWWGSTGRABVTWTDWTMCATAGGTAWA GGCACTGCTGGGGGACCCAG AWWGSTGRABVTDKCAYTSMTRGGKRAMCCAG Direction: Forward Position #: 13 Overlap #: 16 Alignment: AWWGSTGRABVTWTDWTMCATAGGTAWA---- ------------GGCACTGCTGGGGGACCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 311 Combined Motif Reverse Complement Reverse Complement CTGGRTMYCCMARSAKTGYHAVBTMCASCWWT TTGGTAGGATCCGTGATGCC CTGGRTMYCCMARSTKKGTARGHTCCRTSATKCC Direction: Forward Position #: 15 Overlap #: 18 Alignment: CTGGRTMYCCMARSAKTGYHAVBTMCASCWWT-- --------------TTGGTAGGATCCGTGATGCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 55 Combined Motif Original Motif Original Motif CTGGRTMYCCMARSTKKGTARGHTCCRTSATKCC ATGGAATAYTATTCAGCCAT CTGGRTMYCCMARSTWTGKAAKATYMDTCAKBCMT Direction: Forward Position #: 16 Overlap #: 19 Alignment: CTGGRTMYCCMARSTKKGTARGHTCCRTSATKCC- ---------------ATGGAATAYTATTCAGCCAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 107 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 107 Motif 56 Original Motif Original Motif GAGCCACYGCRCC CRTGAGCCACYGYRCCYGGC YGGCGAGCCACYGCRCCCRT Direction: Backward Position #: 5 Overlap #: 13 Alignment: ---GAGCCACYGCRCC---- CRTGAGCCACYGYRCCYGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 Combined Motif Original Motif Reverse Complement YGGCGAGCCACYGCRCCCRT MCCYGGCWSMGASGSTCCT YGGCGAGCCMCYGSSYCMGWSGSTCCT Direction: Forward Position #: 9 Overlap #: 12 Alignment: YGGCGAGCCACYGCRCCCRT------- --------MCCYGGCWSMGASGSTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 111 Combined Motif Original Motif Reverse Complement YGGCGAGCCMCYGSSYCMGWSGSTCCT KGGGCDGAGGGGCTCCT YGGCGAGCCMCTGGGCVSRDGGGYYCYT Direction: Forward Position #: 12 Overlap #: 16 Alignment: YGGCGAGCCMCYGSSYCMGWSGSTCCT- -----------KGGGCDGAGGGGCTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Reverse Complement YGGCGAGCCMCTGGGCVSRDGGGYYCYT TCKMGCCACTGCACTCCAGC YGGCGAGCCMCTKSGCBCMASKGCHCTYCAGC Direction: Forward Position #: 13 Overlap #: 16 Alignment: YGGCGAGCCMCTGGGCVSRDGGGYYCYT---- ------------TCKMGCCACTGCACTCCAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 108 Combined Motif Reverse Complement Reverse Complement GCTGMAGHGCRSTRGBGCSRAGRGGCTCGCCK GCGCTCKTCGGGGAGGCTCG GCTGMAGHGCRSTRGCGCTVVKVGGSKMGSCTCG Direction: Forward Position #: 15 Overlap #: 18 Alignment: GCTGMAGHGCRSTRGBGCSRAGRGGCTCGCCK-- --------------GCGCTCKTCGGGGAGGCTCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 108 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 108 Motif 196 Original Motif Reverse Complement CGAGCCTCCCCGAYGAGCGC CAAGCCTSKGCAATGGCAGG CRAGCCTCSSCRATGRSMGS Direction: Backward Position #: 1 Overlap #: 20 Alignment: CGAGCCTCCCCGAYGAGCGC CAAGCCTSKGCAATGGCAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 194 Combined Motif Reverse Complement Reverse Complement SCRSMCATKGSSGAGGCTKG CAGCTACTCKTATACCCTTG SCRSMCATYRGCKASKCTTRTACCCTTG Direction: Forward Position #: 9 Overlap #: 12 Alignment: SCRSMCATKGSSGAGGCTKG-------- --------CAGCTACTCKTATACCCTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 96 Combined Motif Original Motif Reverse Complement SCRSMCATYRGCKASKCTTRTACCCTTG GGAGCCGGCTCCCTCAGCTT SCRSMCATYRGCKRAGCYKGYWCCCTYRGCTT Direction: Forward Position #: 13 Overlap #: 16 Alignment: SCRSMCATYRGCKASKCTTRTACCCTTG---- ------------GGAGCCGGCTCCCTCAGCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 179 Combined Motif Original Motif Original Motif SCRSMCATYRGCKRAGCYKGYWCCCTYRGCTT AGGTCCTTCAGGAGGTATTC SCRSMCATYRGCKRAGSTCSTTCMSKHGGYWTTC Direction: Forward Position #: 15 Overlap #: 18 Alignment: SCRSMCATYRGCKRAGCYKGYWCCCTYRGCTT-- --------------AGGTCCTTCAGGAGGTATTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 61 Combined Motif Original Motif Original Motif SCRSMCATYRGCKRAGSTCSTTCMSKHGGYWTTC GGATCCACTGGGTGAAGCCA SCRSMCATYRGCKRAGGWTCYWCHGGRKGAAKYCA Direction: Forward Position #: 16 Overlap #: 19 Alignment: SCRSMCATYRGCKRAGSTCSTTCMSKHGGYWTTC- ---------------GGATCCACTGGGTGAAGCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 109 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 109 Motif 29 Reverse Complement Reverse Complement TCTCTCTCTCTCTCTCTCTC MGTCTMKCTCTGTKGCCCAG HSTCTCKCTCTSTBKCYCWS Direction: Backward Position #: 1 Overlap #: 20 Alignment: TCTCTCTCTCTCTCTCTCTC MGTCTMKCTCTGTKGCCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 145 Combined Motif Reverse Complement Original Motif SWGMGRBASAGAGRGAGASH GCCAGTCACAAAARGACAMA SWGMGRBAGMSAGDSASAVAARGACAMA Direction: Forward Position #: 9 Overlap #: 12 Alignment: SWGMGRBASAGAGRGAGASH-------- --------GCCAGTCACAAAARGACAMA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 76 Combined Motif Reverse Complement Reverse Complement TYTGTCMTTBTSTSDCTSYCTBKCYCWS CMTAGYACAGTGCCTGGCAC TYTGTCMTTBTSYVTMKBHCWGTSCCTGGCAC Direction: Forward Position #: 13 Overlap #: 16 Alignment: TYTGTCMTTBTSTSDCTSYCTBKCYCWS---- ------------CMTAGYACAGTGCCTGGCAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Original Motif TYTGTCMTTBTSYVTMKBHCWGTSCCTGGCAC GCTGGAGTGCAGTGGCRYGA TYTGTCMTTBTSYVGCTGVMDTKCMSTGGCACGA Direction: Forward Position #: 15 Overlap #: 18 Alignment: TYTGTCMTTBTSYVTMKBHCWGTSCCTGGCAC-- --------------GCTGGAGTGCAGTGGCRYGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Original Motif Reverse Complement TYTGTCMTTBTSYVGCTGVMDTKCMSTGGCACGA TMGGGAGGCTGAGGCAGGAG TYTGTCMTTBTSYVGYHGGVAKGCWGWGGCASGAG Direction: Forward Position #: 16 Overlap #: 19 Alignment: TYTGTCMTTBTSYVGCTGVMDTKCMSTGGCACGA- ---------------TMGGGAGGCTGAGGCAGGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 110 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 110 Motif 284 Reverse Complement Original Motif TGGCACCCCAT CATTTGGGAGCCCATTGA CATTTGGSASCCCATTGA Direction: Forward Position #: 5 Overlap #: 11 Alignment: ----TGGCACCCCAT--- CATTTGGGAGCCCATTGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 209 Combined Motif Original Motif Original Motif CATTTGGSASCCCATTGA CTGTCAGCCCAT CATTTGGCWGYCMRYYSAT Direction: Forward Position #: 8 Overlap #: 11 Alignment: CATTTGGSASCCCATTGA- -------CTGTCAGCCCAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 193 Combined Motif Original Motif Reverse Complement CATTTGGCWGYCMRYYSAT GKCTGTACCCCCATTGTAT CATTTGGSTSTSHRYCCMYATTGTAT Direction: Forward Position #: 8 Overlap #: 12 Alignment: CATTTGGCWGYCMRYYSAT------- -------GKCTGTACCCCCATTGTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 332 Combined Motif Original Motif Reverse Complement CATTTGGSTSTSHRYCCMYATTGTAT GTTTAACCATTGAGGGCCAG CATTTGGSTSTGTWTMMCCATTGWRKGCCAG Direction: Forward Position #: 12 Overlap #: 15 Alignment: CATTTGGSTSTSHRYCCMYATTGTAT----- -----------GTTTAACCATTGAGGGCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 306 Combined Motif Reverse Complement Original Motif CTGGCYMWCAATGGYYAWACASASCCAAATG GACATGAGCTGGCGCTTG CTGGCYMWCAATGGACATRMRCTGSCRMWTG Direction: Forward Position #: 14 Overlap #: 18 Alignment: CTGGCYMWCAATGGYYAWACASASCCAAATG -------------GACATGAGCTGGCGCTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 111 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 111 Motif 30 Original Motif Original Motif AGGAGCCCCTCHGCCCR AGGAGCGCCTCTKCCCGGC AGGAGCSCCTCTGCCCRGC Direction: Forward Position #: 1 Overlap #: 17 Alignment: AGGAGCCCCTCHGCCCR-- AGGAGCGCCTCTKCCCGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 43 Combined Motif Reverse Complement Reverse Complement GCMGGGCAGAGGSGCTCCT AGGAGRCMCTCTGCCTGGC GCMGGGCAGRRGVGCYYCTGCCTGGC Direction: Forward Position #: 8 Overlap #: 12 Alignment: GCMGGGCAGAGGSGCTCCT------- -------AGGAGRCMCTCTGCCTGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 Combined Motif Reverse Complement Reverse Complement GCCAGGCAGMKGCVCKKCTGCCCRGC MCCYGGCWSMGASGSTCCT GCCAGGCAGMKRCCYGGCTGCSMGGCTCCT Direction: Forward Position #: 12 Overlap #: 15 Alignment: GCCAGGCAGMKGCVCKKCTGCCCRGC---- -----------MCCYGGCWSMGASGSTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 56 Combined Motif Original Motif Original Motif GCCAGGCAGMKRCCYGGCTGCSMGGCTCCT CRTGAGCCACYGYRCCYGGC GCCAGGCAGMKRCCVKGMKCCVCBGCKCCTGGC Direction: Forward Position #: 14 Overlap #: 17 Alignment: GCCAGGCAGMKRCCYGGCTGCSMGGCTCCT--- -------------CRTGAGCCACYGYRCCYGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 62 Combined Motif Original Motif Original Motif GCCAGGCAGMKRCCVKGMKCCVCBGCKCCTGGC AGGAACAGCTCCRGTCTAC GCCAGGCAGMKRCCAGGAACMGCTSCDSYYKRC Direction: Forward Position #: 15 Overlap #: 19 Alignment: GCCAGGCAGMKRCCVKGMKCCVCBGCKCCTGGC --------------AGGAACAGCTCCRGTCTAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 112 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 112 Motif 56 Original Motif Reverse Complement GCTGTGTGACCTTGGGCAAG GCCKGGMKCMGTGGCTCAKG GCYGKGYGMCSTKGSKCADG Direction: Backward Position #: 1 Overlap #: 20 Alignment: GCTGTGTGACCTTGGGCAAG GCCKGGMKCMGTGGCTCAKG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 293 Combined Motif Reverse Complement Original Motif CDTGRSCYASGYCMCYCMGC CTGACTGGGAGACACCTCCC CDTGRSCYMTGACTSGSAGMCACCTCCC Direction: Forward Position #: 9 Overlap #: 12 Alignment: CDTGRSCYASGYCMCYCMGC-------- --------CTGACTGGGAGACACCTCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 29 Combined Motif Original Motif Original Motif CDTGRSCYMTGACTSGSAGMCACCTCCC CTGGGCRACAGAGYRAGACY CDTGRSCYMTGACTGGGMGACASMKCSMGACY Direction: Forward Position #: 13 Overlap #: 16 Alignment: CDTGRSCYMTGACTSGSAGMCACCTCCC---- ------------CTGGGCRACAGAGYRAGACY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 178 Combined Motif Original Motif Reverse Complement CDTGRSCYMTGACTGGGMGACASMKCSMGACY ATGTGGAGGTGGAAGACAGT CDTGRSCYMTGACTRKGTGRMRGHGSAAGACWGT Direction: Forward Position #: 15 Overlap #: 18 Alignment: CDTGRSCYMTGACTGGGMGACASMKCSMGACY-- --------------ATGTGGAGGTGGAAGACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Original Motif ACWGTCTTSCHCMYMCACRKAGTCARKGSKCADG GCTGGAGTGCAGTGGCRYGA ACWGTCTTSCHCMYMSCYGGAGTSCAGKGGCAHGA Direction: Forward Position #: 16 Overlap #: 19 Alignment: ACWGTCTTSCHCMYMCACRKAGTCARKGSKCADG- ---------------GCTGGAGTGCAGTGGCRYGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 113 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 113 Motif 74 Reverse Complement Reverse Complement TAGGAAGTG CCATCTAGGAAGTG TAGGAAGTGCCATC Direction: Backward Position #: 1 Overlap #: 9 Alignment: -----TAGGAAGTG CCATCTAGGAAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 153 Combined Motif Reverse Complement Original Motif GATGGCACTTCCTA CACTAGGGAGTGCC GATGGCACTWSSKAGTGCC Direction: Forward Position #: 6 Overlap #: 9 Alignment: GATGGCACTTCCTA----- -----CACTAGGGAGTGCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 156 Combined Motif Reverse Complement Reverse Complement GGCACTRSSWAGTGCCATC GTCTGGGAAGTG GGCACTRGYYWGKGMMRTS Direction: Forward Position #: 8 Overlap #: 12 Alignment: GGCACTRSSWAGTGCCATC -------GTCTGGGAAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 27 Combined Motif Reverse Complement Original Motif SAMYYCYCWKMCKAGTGCC CACTTCCCAGACGGGGCG SAMYYCYCASHYCMSWGMCGGGGCG Direction: Forward Position #: 8 Overlap #: 12 Alignment: SAMYYCYCWKMCKAGTGCC------ -------CACTTCCCAGACGGGGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 339 Combined Motif Original Motif Original Motif SAMYYCYCASHYCMSWGMCGGGGCG CTCACCTCCTGC SAMYYCYCASCTCACHKCCKGSGCG Direction: Forward Position #: 11 Overlap #: 12 Alignment: SAMYYCYCASHYCMSWGMCGGGGCG ----------CTCACCTCCTGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 114 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 114 Motif 63 Original Motif Reverse Complement CTACGTTCTC AAAMAMMKMATGTTCTCACT AAACWACGYWYKYTCTCACT Direction: Forward Position #: 4 Overlap #: 10 Alignment: ---CTACGTTCTC------- AAAMAMMKMATGTTCTCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 235 Combined Motif Original Motif Reverse Complement AAACWACGYWYKYTCTCACT GCCAATTTCTCCCATTTGGA AAACWACGBHCDHTYTCWCYCATTTGGA Direction: Forward Position #: 9 Overlap #: 12 Alignment: AAACWACGYWYKYTCTCACT-------- --------GCCAATTTCTCCCATTTGGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 257 Combined Motif Reverse Complement Reverse Complement TCCAAATGMGWGAKAHDGDBCGTWGTTT TGTCCATGTGTTCTC TCCAAATGMGWGWGWCHRTGYGTTSTYT Direction: Forward Position #: 13 Overlap #: 15 Alignment: TCCAAATGMGWGAKAHDGDBCGTWGTTT ------------TGTCCATGTGTTCTC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 154 Combined Motif Reverse Complement Reverse Complement AMASAACMCAKDGWCWCWCYCATTTGGA TCCTATGAGAATCTAATG AMASAACMCAKDKHCTMTSASAWTYKRATG Direction: Forward Position #: 13 Overlap #: 16 Alignment: AMASAACMCAKDGWCWCWCYCATTTGGA-- ------------TCCTATGAGAATCTAATG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 245 Combined Motif Reverse Complement Reverse Complement CATKRKAWTSTSARAGDRHRTGYGTTSTYT TTGAGGAGGCAGTCTG CATKRKAWTSTSAKWGAGGAGGCRKTCTBT Direction: Forward Position #: 14 Overlap #: 16 Alignment: CATKRKAWTSTSARAGDRHRTGYGTTSTYT -------------TTGAGGAGGCAGTCTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 115 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 115 Motif 292 Original Motif Original Motif ATGATCCAGCAATYCCACTH AAGACCTTCCAGTGGGACAA AWGAYCYWSCARTSSSACWA Direction: Backward Position #: 1 Overlap #: 20 Alignment: ATGATCCAGCAATYCCACTH AAGACCTTCCAGTGGGACAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 309 Combined Motif Original Motif Reverse Complement AWGAYCYWSCARTSSSACWA MTCCTCCAGACCCCAGAATG AWGAYCYWVYMMTCCARMHMCCAGAATG Direction: Forward Position #: 9 Overlap #: 12 Alignment: AWGAYCYWSCARTSSSACWA-------- --------MTCCTCCAGACCCCAGAATG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 178 Combined Motif Original Motif Original Motif AWGAYCYWVYMMTCCARMHMCCAGAATG ACTGTCTTCCACCTCCACAT AWGAYCYWVYMMWCYRDCTTCCASMWYSACAT Direction: Forward Position #: 13 Overlap #: 16 Alignment: AWGAYCYWVYMMTCCARMHMCCAGAATG---- ------------ACTGTCTTCCACCTCCACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 139 Combined Motif Original Motif Original Motif AWGAYCYWVYMMWCYRDCTTCCASMWYSACAT AGCCYCTGGYAACCAYYAWT AWGAYCYWVYMMWCAGHCYYYSRBAACCACHWWT Direction: Forward Position #: 15 Overlap #: 18 Alignment: AWGAYCYWVYMMWCYRDCTTCCASMWYSACAT-- --------------AGCCYCTGGYAACCAYYAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 336 Combined Motif Original Motif Original Motif AWGAYCYWVYMMWCAGHCYYYSRBAACCACHWWT ATGTAACCAAAYACCACCTG AWGAYCYWVYMMWCARTSTMACVAAAYMMCAYYTG Direction: Forward Position #: 16 Overlap #: 19 Alignment: AWGAYCYWVYMMWCAGHCYYYSRBAACCACHWWT- ---------------ATGTAACCAAAYACCACCTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 116 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 116 Motif 30 Original Motif Reverse Complement GCAGAGGCGCTCCT GCCGGGRAGAGGCGCTCCT CTCCTGCMGRGRMGMKSCK Direction: Backward Position #: 6 Overlap #: 14 Alignment: GCAGAGGCGCTCCT----- GCCGGGRAGAGGCGCTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 43 Combined Motif Reverse Complement Original Motif YGSYRCYMCMCYGCAGGAG GCCAGGCAGAGRGKCTCCT YGSYRCYSCCMKGCAGRRGGKCTCCT Direction: Forward Position #: 8 Overlap #: 12 Alignment: YGSYRCYMCMCYGCAGGAG------- -------GCCAGGCAGAGRGKCTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 111 Combined Motif Reverse Complement Reverse Complement AGGAGRCCMKCTGCYRGGSMGMKSCK KGGGCDGAGGGGCTCCT AGGAGRCCMKCTGSGCGGADGVGCYCCT Direction: Forward Position #: 12 Overlap #: 15 Alignment: AGGAGRCCMKCTGCYRGGSMGMKSCK-- -----------KGGGCDGAGGGGCTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 Combined Motif Original Motif Reverse Complement AGGAGRCCMKCTGSGCGGADGVGCYCCT MCCYGGCWSMGASGSTCCT AGGAGRCCMKCTVCSHGGCDGMGMBGCTCCT Direction: Forward Position #: 13 Overlap #: 16 Alignment: AGGAGRCCMKCTGSGCGGADGVGCYCCT--- ------------MCCYGGCWSMGASGSTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 246 Combined Motif Reverse Complement Reverse Complement AGGAGCBYCYCDGCCDSGVAGRRGGKCTCCT TCAGGAGTGAAGCTGC AGGAGCBYCYCDGYCAGGARKGARGBYKCCT Direction: Forward Position #: 14 Overlap #: 16 Alignment: AGGAGCBYCYCDGCCDSGVAGRRGGKCTCCT -------------TCAGGAGTGAAGCTGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 117 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 117 Motif 7 Original Motif Original Motif AACAACAACAACAAMAA GTCTCWAMAAAAAAWAMAAA GTMWCAACAAMAAMAAMAAA Direction: Forward Position #: 3 Overlap #: 17 Alignment: --AACAACAACAACAAMAA- GTCTCWAMAAAAAAWAMAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 66 Combined Motif Reverse Complement Reverse Complement TTTYTTYTTYTTGTTGWRAC TGTGTGTGTGTKTGTGTGT TTTYTTYTTBTKKKTGTGWVTGTGTGT Direction: Forward Position #: 9 Overlap #: 12 Alignment: TTTYTTYTTYTTGTTGWRAC------- --------TGTGTGTGTGTKTGTGTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 70 Combined Motif Reverse Complement Reverse Complement ACACACAVWCACARRRAVAAMAAMAAA GCAGCAMTATTCACAATAG ACACACAVWCASMAGMAMWAHWMAMAATAG Direction: Forward Position #: 12 Overlap #: 16 Alignment: ACACACAVWCACARRRAVAAMAAMAAA--- -----------GCAGCAMTATTCACAATAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 119 Combined Motif Reverse Complement Reverse Complement CTATTYTYWHTWYTRCTYSTGWVTGTGTGT KKCACCTTGATCTTGGACTT CTATTYTYWHTWYTDCWCCTKGMTSTKKGWCTT Direction: Forward Position #: 14 Overlap #: 17 Alignment: CTATTYTYWHTWYTRCTYSTGWVTGTGTGT--- -------------KKCACCTTGATCTTGGACTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 145 Combined Motif Reverse Complement Reverse Complement AAGWCRRASAYCRAGGWGHAMWAHWMAMAATAG TYTGTCMTTTTGTGACTGGC AAGWCRRASAYCRAKKTGYMMTWTTVWVAMTRGC Direction: Forward Position #: 15 Overlap #: 19 Alignment: AAGWCRRASAYCRAGGWGHAMWAHWMAMAATAG- --------------TYTGTCMTTTTGTGACTGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 118 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 118 Motif 102 Original Motif Original Motif CTCARGTGATCCTCC CTCATTTAATCCTCACAAC CAACCTCADKTRATCCTCM Direction: Backward Position #: 5 Overlap #: 15 Alignment: CTCARGTGATCCTCC---- CTCATTTAATCCTCACAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 350 Original Motif Original Motif CAACCTCADKTRATCCTCM TCTGGAGTGGACCTCCAGCA TCTGGAGTSRACCTCMAGYAATCCTCM Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------CAACCTCADKTRATCCTCM TCTGGAGTGGACCTCCAGCA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 115 Combined Motif Reverse Complement Reverse Complement RGAGGATTKCTYGAGGTMSACTCCAGA HAGTGGKATTGCTGGATCAT RGAGGATTKCTYRRKGKVAWYKCYRGATCAT Direction: Forward Position #: 12 Overlap #: 16 Alignment: RGAGGATTKCTYGAGGTMSACTCCAGA---- -----------HAGTGGKATTGCTGGATCAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Original Motif Reverse Complement RGAGGATTKCTYRRKGKVAWYKCYRGATCAT ARCTCCTGKSCTCAAGKGAT RGAGGATTKCTYRADSTCMTBKCCTSAWSWKAT Direction: Forward Position #: 14 Overlap #: 18 Alignment: RGAGGATTKCTYRRKGKVAWYKCYRGATCAT-- -------------ARCTCCTGKSCTCAAGKGAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 129 Combined Motif Reverse Complement Reverse Complement ATRWSWTSAGGYBARGASHTKMAGYAATCCTCM TGAGKCAATTAAACCTCTT ATRWSWTSAGGYBAKGAGBYDAWKMAAYCYYYY Direction: Forward Position #: 15 Overlap #: 19 Alignment: ATRWSWTSAGGYBARGASHTKMAGYAATCCTCM --------------TGAGKCAATTAAACCTCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 119 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 119 Motif 292 Original Motif Reverse Complement AAGTCCAAGATCAAGGTGYY TTGTCCCACTGGAAGGTCTT WWGTCCMASWKSAAGGTSTT Direction: Backward Position #: 1 Overlap #: 20 Alignment: AAGTCCAAGATCAAGGTGYY TTGTCCCACTGGAAGGTCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 331 Combined Motif Reverse Complement Original Motif AASACCTTSYWSTRGGACWW CCACCACAGCTCAAGGAGGC AASACCTTCCACYRSRRCTHAAGGAGGC Direction: Forward Position #: 9 Overlap #: 12 Alignment: AASACCTTSYWSTRGGACWW-------- --------CCACCACAGCTCAAGGAGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Original Motif Original Motif AASACCTTCCACYRSRRCTHAAGGAGGC ATCRCTTGAGSYCAGGAGKT AASACCTTCCACHWCRVYTVARSSMRGSAGKT Direction: Forward Position #: 13 Overlap #: 16 Alignment: AASACCTTCCACYRSRRCTHAAGGAGGC---- ------------ATCRCTTGAGSYCAGGAGKT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 179 Combined Motif Original Motif Reverse Complement AASACCTTCCACHWCRVYTVARSSMRGSAGKT GAATACCTCCTGAAGGACCT AASACCTTCCACHWSAATWCMWSCWGRARGWYCT Direction: Forward Position #: 15 Overlap #: 18 Alignment: AASACCTTCCACHWCRVYTVARSSMRGSAGKT-- --------------GAATACCTCCTGAAGGACCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 176 Combined Motif Original Motif Original Motif AASACCTTCCACHWSAATWCMWSCWGRARGWYCT AGGCCCCAGTGTSTGTTGTT AASACCTTCCACHWSARKHCCHVSTGWVDGWTSTT Direction: Forward Position #: 16 Overlap #: 19 Alignment: AASACCTTCCACHWSAATWCMWSCWGRARGWYCT- ---------------AGGCCCCAGTGTSTGTTGTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 120 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 120 Motif 257 Reverse Complement Original Motif GGGASCACATGG GAGAACACATGGACA GRGARCACATGGACA Direction: Forward Position #: 1 Overlap #: 12 Alignment: GGGASCACATGG--- GAGAACACATGGACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 284 Original Motif Reverse Complement GRGARCACATGGACA TCAATGGGCTCCCAAATG TCAATGGGSWVCMMAWKGACA Direction: Forward Position #: 7 Overlap #: 12 Alignment: ------GRGARCACATGGACA TCAATGGGCTCCCAAATG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 215 Combined Motif Reverse Complement Reverse Complement TGTCRWTYYGVWSCCCATTGA GGGRSCACAGGAGCD TGTCRWTYBGGASCMCAKKRRCD Direction: Forward Position #: 9 Overlap #: 13 Alignment: TGTCRWTYYGVWSCCCATTGA-- --------GGGRSCACAGGAGCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 235 Combined Motif Reverse Complement Reverse Complement HGMMRYTGYGSTCCBMAWKGACA GCCAATTTCTCCCATTTGGA HGMMRYTGYGCYMMTHWHTSMCATTTGGA Direction: Forward Position #: 10 Overlap #: 14 Alignment: HGMMRYTGYGSTCCBMAWKGACA------ ---------GCCAATTTCTCCCATTTGGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Reverse Complement Original Motif TCCAAATGYSADWHARYKGCMCAKKRRCD ACATCTGYMMCC TCCAAATGYSADACAKCTGCMCMBKRRCD Direction: Forward Position #: 13 Overlap #: 12 Alignment: TCCAAATGYSADWHARYKGCMCAKKRRCD ------------ACATCTGYMMCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 121 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 121 Motif 299 Original Motif Original Motif CTASAACCTCCA CCCTGCTAGAACCTCCAA CCCTGCTAGAACCTCCAA Direction: Forward Position #: 6 Overlap #: 12 Alignment: -----CTASAACCTCCA- CCCTGCTAGAACCTCCAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 178 Reverse Complement Reverse Complement TTGGAGGTTCTAGCAGGG ATGTGGAGGTGGAAGACAGT ATGTGGAGKTGGARGWYMKWGCAGGG Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------TTGGAGGTTCTAGCAGGG ATGTGGAGGTGGAAGACAGT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 333 Combined Motif Original Motif Reverse Complement ATGTGGAGKTGGARGWYMKWGCAGGG AAAGCTGGAGCTATTATCTA ATGTGGAGKTGRAAGHTGGAGCWRKKATCTA Direction: Forward Position #: 12 Overlap #: 15 Alignment: ATGTGGAGKTGGARGWYMKWGCAGGG----- -----------AAAGCTGGAGCTATTATCTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 234 Combined Motif Reverse Complement Original Motif TAGATRRKWGCTCCADCTTKCARCTCCACAT AAGGAACAAACTCCRGACAC TAGATRRKWGCTCAAGSDWBMAACTCCASAYAC Direction: Forward Position #: 14 Overlap #: 18 Alignment: TAGATRRKWGCTCCADCTTKCARCTCCACAT-- -------------AAGGAACAAACTCCRGACAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 328 Combined Motif Reverse Complement Reverse Complement GTKTSTGGAGTTRBWDSCTTGAGCWRKKATCTA KACATTGATTTTGTATC GTKTSTGGAGTTRBTACMTTGAKYTDKTATCTA Direction: Forward Position #: 15 Overlap #: 17 Alignment: GTKTSTGGAGTTRBWDSCTTGAGCWRKKATCTA --------------KACATTGATTTTGTATC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 122 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 122 Motif 98 Original Motif Reverse Complement CCTTGGCCAGCCCAGAAAG CCCACGCCCACCCGGAACT CCYWSGCCMRCCCRGAAMK Direction: Backward Position #: 1 Overlap #: 19 Alignment: CCTTGGCCAGCCCAGAAAG CCCACGCCCACCCGGAACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 309 Reverse Complement Original Motif RRTTCKGGGKYGGCSWMGG CATTCTGGGGTCTGGAGGAY CATTCTGGGGTYYGGRGGHKGCSWMGG Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------RRTTCKGGGKYGGCSWMGG CATTCTGGGGTCTGGAGGAY------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 112 Combined Motif Original Motif Original Motif CATTCTGGGGTYYGGRGGHKGCSWMGG GCTGTGTGACCTTGGGCAAG CATTCTGGGGTBCKGDGKDDSCBTVGGCAAG Direction: Forward Position #: 12 Overlap #: 16 Alignment: CATTCTGGGGTYYGGRGGHKGCSWMGG---- -----------GCTGTGTGACCTTGGGCAAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 312 Combined Motif Reverse Complement Reverse Complement CTTGCCBAVGSHHRCDCRGBACCCCAGAATG CCCMKGGCACCCTCAGTCCT CTTGCCBAVGSHHMCHCRGGMMCCCWSARTSCT Direction: Forward Position #: 14 Overlap #: 18 Alignment: CTTGCCBAVGSHHRCDCRGBACCCCAGAATG-- -------------CCCMKGGCACCCTCAGTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 310 Combined Motif Original Motif Original Motif CTTGCCBAVGSHHMCHCRGGMMCCCWSARTSCT CCCATGCAAGTCYRAAATCC CTTGCCBAVGSHHMCCCAKGCAMSYHYAAWAYYC Direction: Forward Position #: 15 Overlap #: 19 Alignment: CTTGCCBAVGSHHMCHCRGGMMCCCWSARTSCT- --------------CCCATGCAAGTCYRAAATCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 123 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 123 Motif 26 Original Motif Reverse Complement AGCAGTCTGAG TMGGGAGGCTGAGGCAGGAG TMGGGAGRSYRRKSYRRGAG Direction: Forward Position #: 8 Overlap #: 11 Alignment: -------AGCAGTCTGAG-- TMGGGAGGCTGAGGCAGGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 165 Combined Motif Original Motif Original Motif TMGGGAGRSYRRKSYRRGAG ATCTGACAGGAGGYRGAGCT TMGGGAGRVTVDGVCAGGAGGYRGAGCT Direction: Forward Position #: 9 Overlap #: 12 Alignment: TMGGGAGRSYRRKSYRRGAG-------- --------ATCTGACAGGAGGYRGAGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 13 Combined Motif Original Motif Reverse Complement TMGGGAGRVTVDGVCAGGAGGYRGAGCT GGCAATGCCTCGCCCTGCTT TMGGGAGRVTVDGGCARKRSSTVGMSCTGCTT Direction: Forward Position #: 13 Overlap #: 16 Alignment: TMGGGAGRVTVDGVCAGGAGGYRGAGCT---- ------------GGCAATGCCTCGCCCTGCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 67 Combined Motif Reverse Complement Original Motif AAGCAGSRCVASSMRKTGCCDVABKCTCCCRA CTGGGCTCCTGAGTCTGGTG AAGCAGSRCVASSMVTKGSCTCMTGMKYCTGRTG Direction: Forward Position #: 15 Overlap #: 18 Alignment: AAGCAGSRCVASSMRKTGCCDVABKCTCCCRA-- --------------CTGGGCTCCTGAGTCTGGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 191 Combined Motif Reverse Complement Reverse Complement CAMCAGMYYCARGAGSCYAVRSSTVGMSCTGCTT GCTGCARTCTCGGCACTTT CAMCAGMYYCARGAGGCTRCAVBYBSVGCWSYTT Direction: Forward Position #: 16 Overlap #: 19 Alignment: CAMCAGMYYCARGAGSCYAVRSSTVGMSCTGCTT ---------------GCTGCARTCTCGGCACTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 124 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 124 Motif 7 Original Motif Original Motif AAAATAAAA GTCTCWAMAAAAAAWAMAAA AAAAATAAAAGTCTCWAMAA Direction: Backward Position #: 2 Overlap #: 9 Alignment: ----------AAAATAAAA- GTCTCWAMAAAAAAWAMAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 337 Combined Motif Reverse Complement Reverse Complement TTYTWGAGACTTTTATTTTT TTTCTAGTTT TTYTWGAGWYTYTWRTTTTT Direction: Forward Position #: 9 Overlap #: 10 Alignment: TTYTWGAGACTTTTATTTTT --------TTTCTAGTTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 328 Combined Motif Original Motif Reverse Complement TTYTWGAGWYTYTWRTTTTT KACATTGATTTTGTATC TTYTWGAGWWYHTTGWTTTTGTATC Direction: Forward Position #: 9 Overlap #: 12 Alignment: TTYTWGAGWYTYTWRTTTTT----- --------KACATTGATTTTGTATC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 41 Combined Motif Original Motif Reverse Complement TTYTWGAGWWYHTTGWTTTTGTATC TTTTTTTMTTT TTYTWGAGWWTTTTKTTTTTKTATC Direction: Forward Position #: 11 Overlap #: 11 Alignment: TTYTWGAGWWYHTTGWTTTTGTATC ----------TTTTTTTMTTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 254 Combined Motif Reverse Complement Original Motif GATARAAAAARAAAAWWCTCWAMAA AAAATCACAAGCATTCCTAT GATARAAAAAAAAAWYACWMRMAWWCCTAT Direction: Forward Position #: 11 Overlap #: 15 Alignment: GATARAAAAARAAAAWWCTCWAMAA----- ----------AAAATCACAAGCATTCCTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 125 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 125 Motif 98 Reverse Complement Original Motif GCGGCTGGCCGGGCG AGTTCCGGGTGGGCGTGGG TGGGRSKKCYGGSYGGGCG Direction: Backward Position #: 5 Overlap #: 15 Alignment: GCGGCTGGCCGGGCG---- AGTTCCGGGTGGGCGTGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 92 Combined Motif Original Motif Reverse Complement TGGGRSKKCYGGSYGGGCG GGTGGGGGGGTCAGCCCCC TGGGRSKGSTGGGBGGGYSAGCCCCC Direction: Forward Position #: 8 Overlap #: 12 Alignment: TGGGRSKKCYGGSYGGGCG------- -------GGTGGGGGGGTCAGCCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 164 Combined Motif Reverse Complement Original Motif GGGGGCTSMCCCBCCCASCRSKCCCA AGCCCCGGTTCCCGCYCGC GGGGGCTSMCCMGCCCMGSWBBCCSMYCGC Direction: Forward Position #: 12 Overlap #: 15 Alignment: GGGGGCTSMCCCBCCCASCRSKCCCA---- -----------AGCCCCGGTTCCCGCYCGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 78 Combined Motif Original Motif Original Motif GGGGGCTSMCCMGCCCMGSWBBCCSMYCGC CGAGCCCTGCCCCGCGG GGGGGCTSMCCMGCSMGSCHTGCCCCBCGS Direction: Forward Position #: 14 Overlap #: 17 Alignment: GGGGGCTSMCCMGCCCMGSWBBCCSMYCGC -------------CGAGCCCTGCCCCGCGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 100 Combined Motif Reverse Complement Reverse Complement SCGBGGGGCADGSCYSGCYGGYSAGCCCCC CGCGGCGCTTGCGGGCCAGC SCGBGGGGCADGSCBCGSCGSTBRSSSSCCAGC Direction: Forward Position #: 14 Overlap #: 17 Alignment: SCGBGGGGCADGSCYSGCYGGYSAGCCCCC--- -------------CGCGGCGCTTGCGGGCCAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 126 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 126 Motif 278 Reverse Complement Original Motif GATTACAGGCMT ACTTTCAGGCATAACA RMTTWCAGGCATAACA Direction: Forward Position #: 1 Overlap #: 12 Alignment: GATTACAGGCMT---- ACTTTCAGGCATAACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 211 Original Motif Reverse Complement RMTTWCAGGCATAACA CGGCTTCATTCTTGAAGTC CGGCTTVATTHYWGRMRTMACA Direction: Forward Position #: 7 Overlap #: 13 Alignment: ------RMTTWCAGGCATAACA CGGCTTCATTCTTGAAGTC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 254 Combined Motif Original Motif Original Motif CGGCTTVATTHYWGRMRTMACA AAAATCACAAGCATTCCTAT CGGCTTVATWAAAKVASWARCATTCCTAT Direction: Forward Position #: 10 Overlap #: 13 Alignment: CGGCTTVATTHYWGRMRTMACA------- ---------AAAATCACAAGCATTCCTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 310 Combined Motif Original Motif Reverse Complement CGGCTTVATWAAAKVASWARCATTCCTAT GGATTTMKGACTTGCATGGG CGGCTTVATWAARGMWBTMDSAYTYSYATGGG Direction: Forward Position #: 13 Overlap #: 17 Alignment: CGGCTTVATWAAAKVASWARCATTCCTAT--- ------------GGATTTMKGACTTGCATGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Combined Motif Original Motif Reverse Complement CGGCTTVATWAARGMWBTMDSAYTYSYATGGG MGGGATATAATCTCCTGGTG CGGCTTVATWAARGMDGKATVWHWTCTMYKGGTG Direction: Forward Position #: 15 Overlap #: 18 Alignment: CGGCTTVATWAARGMWBTMDSAYTYSYATGGG-- --------------MGGGATATAATCTCCTGGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 127 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 127 Motif 46 Original Motif Original Motif CCCCAACCCC CCCCWCCCCCA CCCCWMCCCCA Direction: Forward Position #: 1 Overlap #: 10 Alignment: CCCCAACCCC- CCCCWCCCCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 92 Original Motif Original Motif CCCCWMCCCCA GGGGGCTGACCCCCCCACC GGGGSCYSACCCCCMCACC Direction: Forward Position #: 5 Overlap #: 11 Alignment: ----CCCCWMCCCCA---- GGGGGCTGACCCCCCCACC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 309 Reverse Complement Original Motif GGTGRGGGGGTSKGSCCCC CATTCTGGGGTCTGGAGGAY CATTCTGGGGTSTGGRGGWYKGSCCCC Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------GGTGRGGGGGTSKGSCCCC CATTCTGGGGTCTGGAGGAY------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 259 Combined Motif Reverse Complement Original Motif GGGGSCYKWCCKCCASACCCCAGAATG CCCACACCCTTATTA GGGGSCYKWCCBCCACACCCYWRWWWG Direction: Forward Position #: 12 Overlap #: 15 Alignment: GGGGSCYKWCCKCCASACCCCAGAATG -----------CCCACACCCTTATTA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 105 Combined Motif Original Motif Original Motif GGGGSCYKWCCBCCACACCCYWRWWWG GCCTCTCCCTCCACACCTCC GGGGSCYKWCCGCCWCWCCCTHVAHASCTCC Direction: Forward Position #: 12 Overlap #: 16 Alignment: GGGGSCYKWCCBCCACACCCYWRWWWG---- -----------GCCTCTCCCTCCACACCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 128 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 128 Motif 95 Reverse Complement Reverse Complement CMGCTCCGAGTGCGG CACCTCCCAGACMGGGT CASCTCCSAGWSCGGGT Direction: Forward Position #: 1 Overlap #: 15 Alignment: CMGCTCCGAGTGCGG-- CACCTCCCAGACMGGGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 321 Original Motif Reverse Complement CASCTCCSAGWSCGGGT GCTCCACCCAGTTCGAGCTT GCTCCACCMRSTYCGAGHKYGGGT Direction: Forward Position #: 8 Overlap #: 13 Alignment: -------CASCTCCSAGWSCGGGT GCTCCACCCAGTTCGAGCTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 82 Combined Motif Reverse Complement Reverse Complement ACCCMRDCTCGMASKRGGTGGAGC GCTGGCCCKGGTGCTAAGC ACCCMRDCTCGCWGGSSSTGGWGCTAAGC Direction: Forward Position #: 11 Overlap #: 14 Alignment: ACCCMRDCTCGMASKRGGTGGAGC----- ----------GCTGGCCCKGGTGCTAAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 25 Combined Motif Reverse Complement Original Motif GCTTAGCWCCASSSCCWGCGAGHKYGGGT CATTTCCAWCTGAGGTAC GCTTAGCWCCASCAYYTSCRASTGAGGKWC Direction: Forward Position #: 13 Overlap #: 17 Alignment: GCTTAGCWCCASSSCCWGCGAGHKYGGGT- ------------CATTTCCAWCTGAGGTAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 191 Combined Motif Reverse Complement Original Motif GWRCCTCASTKGSAMMTGSTGGWGCTAAGC AAAGTGCCGAGAKTGCAGC GWRCCTCASTKGSAAAGKGYSGAGMTWRSMGC Direction: Forward Position #: 14 Overlap #: 17 Alignment: GWRCCTCASTKGSAMMTGSTGGWGCTAAGC-- -------------AAAGTGCCGAGAKTGCAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 129 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 129 Motif 292 Original Motif Original Motif AAGAGGTTTAATTGRCTCA AAGACCTTCCAGTGGGACAA AAAGASSTTYMAKTGGSWCA Direction: Backward Position #: 2 Overlap #: 19 Alignment: AAGAGGTTTAATTGRCTCA- AAGACCTTCCAGTGGGACAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 115 Combined Motif Original Motif Original Motif AAAGASSTTYMAKTGGSWCA ATGATCCAGCAATYCCACTH AAAGASSTWTVATYSRGHMATYCCACTH Direction: Forward Position #: 9 Overlap #: 12 Alignment: AAAGASSTTYMAKTGGSWCA-------- --------ATGATCCAGCAATYCCACTH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 262 Combined Motif Original Motif Reverse Complement AAAGASSTWTVATYSRGHMATYCCACTH GACAGGAGATTAACACTGAG AAAGASSTWTVAGHCAGBARWYYMACWCTGAG Direction: Forward Position #: 13 Overlap #: 16 Alignment: AAAGASSTWTVATYSRGHMATYCCACTH---- ------------GACAGGAGATTAACACTGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 83 Combined Motif Reverse Complement Reverse Complement CTCAGWGTYMMWMTBCTGHCTVAWASSTCTTT GTKTMTATMTACCACATTTT CTCAGWGTYMMWMTGYKKHYWBAWACCWCWTTTT Direction: Forward Position #: 15 Overlap #: 18 Alignment: CTCAGWGTYMMWMTBCTGHCTVAWASSTCTTT-- --------------GTKTMTATMTACCACATTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 64 Combined Motif Reverse Complement Original Motif AAAAWGWGGTWTVWMHRRMCARWYYMACWCTGAG GAAGGCAGCTAAGGCCCGGY AAAAWGWGGTWTVWMGAAGGMADCTAASDCYSRGY Direction: Forward Position #: 16 Overlap #: 19 Alignment: AAAAWGWGGTWTVWMHRRMCARWYYMACWCTGAG- ---------------GAAGGCAGCTAAGGCCCGGY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 130 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 130 Motif 190 Original Motif Reverse Complement ATTATTATYAT ATCATTCTTATGCCTTTG ATYATTMTTATGCCTTTG Direction: Forward Position #: 1 Overlap #: 11 Alignment: ATTATTATYAT------- ATCATTCTTATGCCTTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 270 Combined Motif Original Motif Original Motif ATYATTMTTATGCCTTTG CCATGATTGTRAGG ATYATTMYYATGMYTKTGAGG Direction: Forward Position #: 8 Overlap #: 11 Alignment: ATYATTMTTATGCCTTTG--- -------CCATGATTGTRAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 70 Combined Motif Reverse Complement Original Motif CCTCARAMYCATKKYAATKAT CTATTGTGAATARTGCTGC CCTCARAMCYATTGTRAWTADTGCTGC Direction: Forward Position #: 9 Overlap #: 13 Alignment: CCTCARAMYCATKKYAATKAT------ --------CTATTGTGAATARTGCTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 287 Combined Motif Reverse Complement Original Motif GCAGCADTAWTKACAATKGYTKTGAGG CATTATGCTAARTG GCAGCADTAWTBAYWATGSTWDKKRGG Direction: Forward Position #: 12 Overlap #: 14 Alignment: GCAGCADTAWTKACAATKGYTKTGAGG -----------CATTATGCTAARTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 55 Combined Motif Original Motif Reverse Complement GCAGCADTAWTBAYWATGSTWDKKRGG ATGGCTGAATAKTATTCCAT GCAGCADTAWTHWKGMTGVWTAKTAKKCCAT Direction: Forward Position #: 12 Overlap #: 16 Alignment: GCAGCADTAWTBAYWATGSTWDKKRGG---- -----------ATGGCTGAATAKTATTCCAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 131 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 131 Motif 8 Original Motif Reverse Complement CCTGGGTTCAA ARCTCCTGKSCTCAAGKGAT ARCTCCYKGGSTYMARKGAT Direction: Forward Position #: 6 Overlap #: 11 Alignment: -----CCTGGGTTCAA---- ARCTCCTGKSCTCAAGKGAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 82 Combined Motif Original Motif Reverse Complement ARCTCCYKGGSTYMARKGAT GCTGGCCCKGGTGCTAAGC ARCTCCYKGSKKKCMVKGRTGCTAAGC Direction: Forward Position #: 9 Overlap #: 12 Alignment: ARCTCCYKGGSTYMARKGAT------- --------GCTGGCCCKGGTGCTAAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 290 Combined Motif Reverse Complement Original Motif GCTTAGCAMCYVRGYRRSCRKGGAGKT TGATACCCAGGCAAACAG GCTTAGCAMCYDGRTAMCCAGGSARWYAG Direction: Forward Position #: 12 Overlap #: 16 Alignment: GCTTAGCAMCYVRGYRRSCRKGGAGKT-- -----------TGATACCCAGGCAAACAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 170 Combined Motif Reverse Complement Original Motif CTKWKTSCCTGGRTAKCDKGRTGCTAAGC AATCAACCCTGGYRATCAAT CTKWKTSCCTGGAWWYMABSVTGSTAAKCAAT Direction: Forward Position #: 13 Overlap #: 17 Alignment: CTKWKTSCCTGGRTAKCDKGRTGCTAAGC--- ------------AATCAACCCTGGYRATCAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 326 Combined Motif Original Motif Original Motif CTKWKTSCCTGGAWWYMABSVTGSTAAKCAAT GACATGGAGTCAAAGG CTKWKTSCCTGGAWGHCATGGWGBYAADSRAT Direction: Forward Position #: 15 Overlap #: 16 Alignment: CTKWKTSCCTGGAWWYMABSVTGSTAAKCAAT --------------GACATGGAGTCAAAGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 132 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 132 Motif 191 Reverse Complement Reverse Complement GCCGCCATCTTG GCTGCARTCTCGGCACTTT GCACTTTGCYGCMATCTYG Direction: Backward Position #: 8 Overlap #: 12 Alignment: GCCGCCATCTTG------- GCTGCARTCTCGGCACTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 294 Reverse Complement Original Motif CMAGATRGCMGCAAAGTGC AGCTGTGAGAAGAGGGCCAC AGCTGTGASAAGAKGGCCRCAAAGTGC Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------CMAGATRGCMGCAAAGTGC AGCTGTGAGAAGAGGGCCAC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 48 Combined Motif Original Motif Original Motif AGCTGTGASAAGAKGGCCRCAAAGTGC AGCTCCCAGCGTGAGCGACG AGCTGTGASAARRSKSCCASMRWGWGCGACG Direction: Forward Position #: 12 Overlap #: 16 Alignment: AGCTGTGASAAGAKGGCCRCAAAGTGC---- -----------AGCTCCCAGCGTGAGCGACG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 70 Combined Motif Reverse Complement Reverse Complement CGTCGCWCWKYSTGGSRSKKTTSTCACAGCT GCAGCAMTATTCACAATAG CGTCGCWCWKYSTGSAGCDBTWYTCACARYWG Direction: Forward Position #: 14 Overlap #: 18 Alignment: CGTCGCWCWKYSTGGSRSKKTTSTCACAGCT- -------------GCAGCAMTATTCACAATAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 222 Combined Motif Original Motif Original Motif CGTCGCWCWKYSTGSAGCDBTWYTCACARYWG CGAGATCACGCCA CGTCGCWCWKYSTGCGRGATYACKCMMARYWG Direction: Forward Position #: 15 Overlap #: 13 Alignment: CGTCGCWCWKYSTGSAGCDBTWYTCACARYWG --------------CGAGATCACGCCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 133 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 133 Motif 84 Reverse Complement Reverse Complement TGGGGACMCAG GGCACTGCTGGGGGACCCAG KGGGGACMCAGGGCACTGCT Direction: Backward Position #: 1 Overlap #: 11 Alignment: ---------TGGGGACMCAG GGCACTGCTGGGGGACCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 193 Combined Motif Reverse Complement Reverse Complement AGCAGTGCCCTGRGTCCCCY GKCTGTACCCCCATTGTAT AGCAGTGCSYYKGKWCCCCCATTGTAT Direction: Forward Position #: 9 Overlap #: 12 Alignment: AGCAGTGCCCTGRGTCCCCY------- --------GKCTGTACCCCCATTGTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 245 Combined Motif Reverse Complement Reverse Complement ATACAATGGGGGWYCRKKSGCACTGCT TTGAGGAGGCAGTCTG ATACAATGGGGKTBMGGDGGCASTSYK Direction: Forward Position #: 12 Overlap #: 16 Alignment: ATACAATGGGGGWYCRKKSGCACTGCT -----------TTGAGGAGGCAGTCTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 91 Combined Motif Reverse Complement Reverse Complement RKSASTGCCDCCYBARCCCCATTGTAT TTGAGACMGKGTCT RKSASTGCCDCYTGAGMCCSDKTSTAT Direction: Forward Position #: 12 Overlap #: 14 Alignment: RKSASTGCCDCCYBARCCCCATTGTAT -----------TTGAGACMGKGTCT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 112 Combined Motif Original Motif Reverse Complement RKSASTGCCDCYTGAGMCCSDKTSTAT CTTGCCCAAGGTCACACAGC RKSASTGCCDCCTKRSMCMVRKTCWMWCAGC Direction: Forward Position #: 12 Overlap #: 16 Alignment: RKSASTGCCDCYTGAGMCCSDKTSTAT---- -----------CTTGCCCAAGGTCACACAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 134 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 134 Motif 73 Original Motif Original Motif CAAACTGCA CAAACTGCAAG AGCAAACTGCA Direction: Backward Position #: 3 Overlap #: 9 Alignment: CAAACTGCA-- CAAACTGCAAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 304 Original Motif Reverse Complement AGCAAACTGCA AGCAGYTTGGAAACACT AGCARBYWRRMWRCACT Direction: Forward Position #: 5 Overlap #: 11 Alignment: ----AGCAAACTGCA-- AGCAGYTTGGAAACACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 245 Combined Motif Original Motif Original Motif AGCARBYWRRMWRCACT CAGACTGCCTCCTCAA AGCARBCAGACTGCMYYCTCAA Direction: Forward Position #: 7 Overlap #: 11 Alignment: AGCARBYWRRMWRCACT----- ------CAGACTGCCTCCTCAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 123 Combined Motif Reverse Complement Original Motif TTGAGMKYGCAGTCTGBKTGCT AGCAGTCTGAG TTGAGMKYGMRSWSTSTGWGCT Direction: Forward Position #: 10 Overlap #: 11 Alignment: TTGAGMKYGCAGTCTGBKTGCT ---------AGCAGTCTGAG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 71 Combined Motif Original Motif Original Motif TTGAGMKYGMRSWSTSTGWGCT AGCACTTTG TTGAGMKYGAGCACTTTGWGCT Direction: Forward Position #: 10 Overlap #: 9 Alignment: TTGAGMKYGMRSWSTSTGWGCT ---------AGCACTTTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 135 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 135 Motif 100 Reverse Complement Original Motif CTGGGCAACAAGAG GCTGGCCCGCAAGCGCCGCG GCYSGSMARCRMSRSGCTGG Direction: Backward Position #: 2 Overlap #: 14 Alignment: -----CTGGGCAACAAGAG- GCTGGCCCGCAAGCGCCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 29 Combined Motif Reverse Complement Original Motif CCAGCSKSYKGKTYSCSMGC CTGGGCRACAGAGYRAGACY CCAGCSKSCTGGKYVMCAGMGYRAGACY Direction: Forward Position #: 9 Overlap #: 12 Alignment: CCAGCSKSYKGKTYSCSMGC-------- --------CTGGGCRACAGAGYRAGACY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 332 Combined Motif Reverse Complement Original Motif MGTCTMKCYCTGYVKRCCAGSRSGCTGG CTGGCCCTCAATGGTTAAAC MGTCTMKCYCTGCTGGCCMKCAVKSKKKAAAC Direction: Forward Position #: 13 Overlap #: 16 Alignment: MGTCTMKCYCTGYVKRCCAGSRSGCTGG---- ------------CTGGCCCTCAATGGTTAAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 225 Combined Motif Original Motif Original Motif MGTCTMKCYCTGCTGGCCMKCAVKSKKKAAAC GCACATGTAYCCYAGAACTT MGTCTMKCYCTGCTGSMCATSWABCBBDRAACTT Direction: Forward Position #: 15 Overlap #: 18 Alignment: MGTCTMKCYCTGCTGGCCMKCAVKSKKKAAAC-- --------------GCACATGTAYCCYAGAACTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 147 Combined Motif Original Motif Reverse Complement MGTCTMKCYCTGCTGSMCATSWABCBBDRAACTT TCAATGGTGCCCAG MGTCTMKCYCTGCTGTCMATGDWGCCCAGAACTT Direction: Forward Position #: 16 Overlap #: 14 Alignment: MGTCTMKCYCTGCTGSMCATSWABCBBDRAACTT ---------------TCAATGGTGCCCAG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 136 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 136 Motif 155 Reverse Complement Reverse Complement CCCCGGGCAGTGAGGG GCCKCCCCGTCCGGGAGGGA GCCSCCCSGKCMGKGAGGGA Direction: Forward Position #: 4 Overlap #: 16 Alignment: ---CCCCGGGCAGTGAGGG- GCCKCCCCGTCCGGGAGGGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 201 Combined Motif Original Motif Reverse Complement GCCSCCCSGKCMGKGAGGGA ACCKTCGCGGTGAGTGTTAC GCCSCCCSRBCHKBGMGGKRAGTGTTAC Direction: Forward Position #: 9 Overlap #: 12 Alignment: GCCSCCCSGKCMGKGAGGGA-------- --------ACCKTCGCGGTGAGTGTTAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 95 Combined Motif Reverse Complement Original Motif GTAACACTKRCCYCBRHGBKSGGGSGGC ACCCYGTCTGGGAGGTG GTAACACTKRCCWCCMHGTBTGGGAGGYG Direction: Forward Position #: 13 Overlap #: 16 Alignment: GTAACACTKRCCYCBRHGBKSGGGSGGC- ------------ACCCYGTCTGGGAGGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 78 Combined Motif Reverse Complement Reverse Complement CKCCTCCCABACHRGGWGGKRAGTGTTAC CCGCGGGGCAGGGCTCG CKCCTCCCABACCCGSDGGGMAGKGYTMS Direction: Forward Position #: 13 Overlap #: 17 Alignment: CKCCTCCCABACHRGGWGGKRAGTGTTAC ------------CCGCGGGGCAGGGCTCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 331 Combined Motif Reverse Complement Reverse Complement SYAKCYCTRCCCHSCGGGTBTGGGAGGYG GCCTCCTTGAGCTGTGGTGG SYAKCYCTRCCCGCCKSSTTGRGSTGKBGTGG Direction: Forward Position #: 13 Overlap #: 17 Alignment: SYAKCYCTRCCCHSCGGGTBTGGGAGGYG--- ------------GCCTCCTTGAGCTGTGGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 137 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 137 Motif 357 Reverse Complement Reverse Complement TWTACCTATGTAACAAACCT TAATTTTATGTGTCAACTTG TAWWYYTATGTRWCAAMYYK Direction: Forward Position #: 1 Overlap #: 20 Alignment: TWTACCTATGTAACAAACCT TAATTTTATGTGTCAACTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 119 Combined Motif Reverse Complement Reverse Complement RMMYTTGWKACATAMKWWTA KKCACCTTGATCTTGGACTT RMMYTTGWKRCAYMHTKATMTTGGACTT Direction: Forward Position #: 9 Overlap #: 12 Alignment: RMMYTTGWKACATAMKWWTA-------- --------KKCACCTTGATCTTGGACTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 106 Combined Motif Reverse Complement Reverse Complement AAGTCCAAYATYAHYKTGKYWCAAMYYK GGGATTGTAAATACACCAAT AAGTCCAAYATYRGKDTKGTAMAWACACCAAT Direction: Forward Position #: 13 Overlap #: 16 Alignment: AAGTCCAAYATYAHYKTGKYWCAAMYYK---- ------------GGGATTGTAAATACACCAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 86 Combined Motif Original Motif Original Motif AAGTCCAAYATYRGKDTKGTAMAWACACCAAT AGTAGGTGCTCARTAAATRB AAGTCCAAYATYRGDRTDGKWVMTMMAYMAATRB Direction: Forward Position #: 15 Overlap #: 18 Alignment: AAGTCCAAYATYRGKDTKGTAMAWACACCAAT-- --------------AGTAGGTGCTCARTAAATRB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 308 Combined Motif Original Motif Original Motif AAGTCCAAYATYRGDRTDGKWVMTMMAYMAATRB AAATTAGGCCAATTAATAAC AAGTCCAAYATYRGDAWAKTAGVYCAATYAATAAC Direction: Forward Position #: 16 Overlap #: 19 Alignment: AAGTCCAAYATYRGDRTDGKWVMTMMAYMAATRB- ---------------AAATTAGGCCAATTAATAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 138 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 138 Motif 52 Reverse Complement Reverse Complement GGSKGATCTGGCTG GGTGGAGCTGCCTGCCAGTC CCAGTCGGKGGAKCTGSCTG Direction: Backward Position #: 7 Overlap #: 14 Alignment: GGSKGATCTGGCTG------ GGTGGAGCTGCCTGCCAGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 299 Combined Motif Original Motif Reverse Complement CCAGTCGGKGGAKCTGSCTG TTGGAGGTTCTAGCAGGG CCAGTCGGTKGRDSKKBCTRGCAGGG Direction: Forward Position #: 9 Overlap #: 12 Alignment: CCAGTCGGKGGAKCTGSCTG------ --------TTGGAGGTTCTAGCAGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 56 Combined Motif Original Motif Reverse Complement CCAGTCGGTKGRDSKKBCTRGCAGGG GCCKGGMKCMGTGGCTCAKG CCAGTCGGTKGGVCKGKCKVVSWGGSTCAKG Direction: Forward Position #: 12 Overlap #: 15 Alignment: CCAGTCGGTKGRDSKKBCTRGCAGGG----- -----------GCCKGGMKCMGTGGCTCAKG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 321 Combined Motif Reverse Complement Reverse Complement CRTGASCCWSVVRGYCRGVCCRACCGACTGG GCTCCACCCAGTTCGAGCTT CRTGASCCWSVVRGCYVCACCMASYKMSWGSTT Direction: Forward Position #: 14 Overlap #: 18 Alignment: CRTGASCCWSVVRGYCRGVCCRACCGACTGG-- -------------GCTCCACCCAGTTCGAGCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 96 Combined Motif Original Motif Original Motif CRTGASCCWSVVRGCYVCACCMASYKMSWGSTT AAGCTGAGGGAGCCGGCTCC CRTGASCCWSVVRGMWGCWSMGRGWGMCDGCTYC Direction: Forward Position #: 15 Overlap #: 19 Alignment: CRTGASCCWSVVRGCYVCACCMASYKMSWGSTT- --------------AAGCTGAGGGAGCCGGCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 139 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 139 Motif 8 Reverse Complement Original Motif AWTKKTGGTTKCCAGKGGCT ATCRCTTGAGSYCAGGAGKT ATYDSTKGWKBCCAGGRGBT Direction: Forward Position #: 1 Overlap #: 20 Alignment: AWTKKTGGTTKCCAGKGGCT ATCRCTTGAGSYCAGGAGKT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 176 Combined Motif Original Motif Original Motif ATYDSTKGWKBCCAGGRGBT AGGCCCCAGTGTSTGTTGTT ATYDSTKGAGGCCMSRGKGTSTGTTGTT Direction: Forward Position #: 9 Overlap #: 12 Alignment: ATYDSTKGWKBCCAGGRGBT-------- --------AGGCCCCAGTGTSTGTTGTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 309 Combined Motif Reverse Complement Reverse Complement AACAACASACRCMSRGGCCTCRASHMAT MTCCTCCAGACCCCAGAATG AACAACASACRCMBVSKCCWSAMCCCAKAATG Direction: Forward Position #: 13 Overlap #: 16 Alignment: AACAACASACRCMSRGGCCTCRASHMAT---- ------------MTCCTCCAGACCCCAGAATG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 115 Combined Motif Original Motif Reverse Complement AACAACASACRCMBVSKCCWSAMCCCAKAATG HAGTGGKATTGCTGGATCAT AACAACASACRCMBHAKYSDGAHYSCWGRATSAT Direction: Forward Position #: 15 Overlap #: 18 Alignment: AACAACASACRCMBVSKCCWSAMCCCAKAATG-- --------------HAGTGGKATTGCTGGATCAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 104 Combined Motif Original Motif Reverse Complement AACAACASACRCMBHAKYSDGAHYSCWGRATSAT CTCCAGKTMCATCCATGTTG AACAACASACRCMBHMTCCAGDTHCMTSMATGWTG Direction: Forward Position #: 16 Overlap #: 19 Alignment: AACAACASACRCMBHAKYSDGAHYSCWGRATSAT- ---------------CTCCAGKTMCATCCATGTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 140 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 140 Motif 211 Reverse Complement Original Motif GACTTCATGGAG GACTTCAAGAATGAAGCCG GAAGCCGGACTTCAWGRAK Direction: Backward Position #: 8 Overlap #: 12 Alignment: GACTTCATGGAG------- GACTTCAAGAATGAAGCCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 321 Original Motif Reverse Complement GAAGCCGGACTTCAWGRAK GCTCCACCCAGTTCGAGCTT GCTCCACCSARKYCGRRCTTCAWGRAK Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------GAAGCCGGACTTCAWGRAK GCTCCACCCAGTTCGAGCTT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 33 Combined Motif Reverse Complement Reverse Complement YTKCWTGAAGMKCGMYKTSGGTGGAGC GAGACTCCGTGGGCGT YTKCWTGAAGMGMGACTYCGKKGGMGY Direction: Forward Position #: 12 Overlap #: 16 Alignment: YTKCWTGAAGMKCGMYKTSGGTGGAGC -----------GAGACTCCGTGGGCGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 163 Combined Motif Reverse Complement Reverse Complement MCYCCYRCGKAGTCYCRCTTCAWGRAK GGAGCCCACGGAGG MCYCCYRCGKAGKMKCSCWYSRAGGAK Direction: Forward Position #: 12 Overlap #: 14 Alignment: MCYCCYRCGKAGTCYCRCTTCAWGRAK -----------GGAGCCCACGGAGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 179 Combined Motif Original Motif Reverse Complement MCYCCYRCGKAGKMKCSCWYSRAGGAK GAATACCTCCTGAAGGACCT MCYCCYRCGKAGVATMCCTCCKRRRRGACCT Direction: Forward Position #: 12 Overlap #: 16 Alignment: MCYCCYRCGKAGKMKCSCWYSRAGGAK---- -----------GAATACCTCCTGAAGGACCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 141 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 141 Motif 299 Reverse Complement Original Motif CTACATGGACCTT CCCTGCTAGAACCTCCAA CAACTRCWWGRACCTYCC Direction: Backward Position #: 4 Overlap #: 13 Alignment: --CTACATGGACCTT--- CCCTGCTAGAACCTCCAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 225 Reverse Complement Reverse Complement GGKAGGTMCWWGMAGTTG AAGTTCTKGGKTACATGTGC AAGTTCTKGGKWRSWHSTKSMAGTTG Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------GGKAGGTMCWWGMAGTTG AAGTTCTKGGKTACATGTGC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 104 Combined Motif Original Motif Reverse Complement AAGTTCTKGGKWRSWHSTKSMAGTTG CTCCAGKTMCATCCATGTTG AAGTTCTKGGKHTCHAGTKSCAKYYRTGTTG Direction: Forward Position #: 12 Overlap #: 15 Alignment: AAGTTCTKGGKWRSWHSTKSMAGTTG----- -----------CTCCAGKTMCATCCATGTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 322 Combined Motif Reverse Complement Reverse Complement CAACAKKMYTGSRACTDGADYCCYAGAACTT GCAWSTGCAAAGGCCCT CAACAKKMYTGSRDCWDGTGCMMMRGMMCTT Direction: Forward Position #: 14 Overlap #: 17 Alignment: CAACAKKMYTGSRACTDGADYCCYAGAACTT -------------GCAWSTGCAAAGGCCCT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 311 Combined Motif Reverse Complement Reverse Complement AAGRYCMYYYGCACDWGHKSCAKYYRTGTTG TTGGTAGGATCCGTGATGCC AAGRYCMYYYGCAYTKGTAGSATCCGTGWTGCC Direction: Forward Position #: 14 Overlap #: 18 Alignment: AAGRYCMYYYGCACDWGHKSCAKYYRTGTTG-- -------------TTGGTAGGATCCGTGATGCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 142 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 142 Motif 272 Original Motif Original Motif CAGATGTC CAGCTGTCAC ACCAGMTGTC Direction: Backward Position #: 3 Overlap #: 8 Alignment: CAGATGTC-- CAGCTGTCAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 269 Reverse Complement Original Motif GACARCTGGT AGCGACATGTGC RRCRACWKGTGC Direction: Forward Position #: 1 Overlap #: 10 Alignment: GACARCTGGT-- AGCGACATGTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 166 Reverse Complement Original Motif GCACRWGTMGMM AAGGGACATTKGAG AAGGGRCAYDTGWVGMM Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----GCACRWGTMGMM AAGGGACATTKGAG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 216 Combined Motif Original Motif Original Motif AAGGGRCAYDTGWVGMM CAGAAATCACC AAGGGRCASAARTCRCC Direction: Forward Position #: 7 Overlap #: 11 Alignment: AAGGGRCAYDTGWVGMM ------CAGAAATCACC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 334 Combined Motif Original Motif Original Motif AAGGGRCASAARTCRCC CATCTGTCAC AAGGGRCATMWGTCACC Direction: Forward Position #: 7 Overlap #: 10 Alignment: AAGGGRCASAARTCRCC ------CATCTGTCAC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 143 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 143 Motif 84 Original Motif Original Motif CTGCGTCGCTCAC CTGGGTCCCCCAGCAGTGCC CAGTGCCCTGSGTCSCYCAS Direction: Backward Position #: 8 Overlap #: 13 Alignment: CTGCGTCGCTCAC------- CTGGGTCCCCCAGCAGTGCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 56 Combined Motif Reverse Complement Original Motif STGMGSGACSCAGGGCACTG CRTGAGCCACYGYRCCYGGC STGMGSGACVYRRGSCACTGYRCCYGGC Direction: Forward Position #: 9 Overlap #: 12 Alignment: STGMGSGACSCAGGGCACTG-------- --------CRTGAGCCACYGYRCCYGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 246 Combined Motif Reverse Complement Original Motif GCCKGGMKCAGTGSCMKKVGTCSCYCAS GCAGCTTCACTCCTGA GCCKGGMKCAGTGCMVYTTSWCYCCYRR Direction: Forward Position #: 13 Overlap #: 16 Alignment: GCCKGGMKCAGTGSCMKKVGTCSCYCAS ------------GCAGCTTCACTCCTGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 29 Combined Motif Reverse Complement Reverse Complement KKKGGMGWSAAKVYGCACTGYRCCYGGC MGTCTMKCTCTGTKGCCCAG KKKGGMGWSAAKMBKCWCKSTVYSTGGCCCAG Direction: Forward Position #: 13 Overlap #: 16 Alignment: KKKGGMGWSAAKVYGCACTGYRCCYGGC---- ------------MGTCTMKCTCTGTKGCCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 116 Combined Motif Original Motif Reverse Complement KKKGGMGWSAAKMBKCWCKSTVYSTGGCCCAG AGGAGCGCCTCTGC KKKGGMGWSAAKMBHSGMGCKCCTYTGCCCAG Direction: Forward Position #: 15 Overlap #: 14 Alignment: KKKGGMGWSAAKMBKCWCKSTVYSTGGCCCAG --------------AGGAGCGCCTCTGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 144 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 144 Motif 61 Reverse Complement Original Motif GGGCTCCCACAGTGCAGCGG GGATCCACTGGGTGAAGCCA GGRYYCMCWSRGTGMAGCSR Direction: Forward Position #: 1 Overlap #: 20 Alignment: GGGCTCCCACAGTGCAGCGG GGATCCACTGGGTGAAGCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 321 Combined Motif Original Motif Original Motif GGRYYCMCWSRGTGMAGCSR AAGCTCGAACTGGGTGGAGC GGRYYCMCAAGSTSVARCBGGGTGGAGC Direction: Forward Position #: 9 Overlap #: 12 Alignment: GGRYYCMCWSRGTGMAGCSR-------- --------AAGCTCGAACTGGGTGGAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 171 Combined Motif Reverse Complement Reverse Complement GCTCCACCCVGMTBSASCTTGYGKMKCC ACTTTGGACTGTGGACTTTT GCTCCACCCVGMWCYWYSKWSTGTVGMCTTTT Direction: Forward Position #: 13 Overlap #: 16 Alignment: GCTCCACCCVGMTBSASCTTGYGKMKCC---- ------------ACTTTGGACTGTGGACTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 29 Combined Motif Reverse Complement Reverse Complement AAAAGRCVACASWYSMWMGWRCBGGGTGGAGC MGTCTMKCTCTGTKGCCCAG AAAAGRCVACASWYMGTCTHGCTSKGTGGMSCAG Direction: Forward Position #: 15 Overlap #: 18 Alignment: AAAAGRCVACASWYSMWMGWRCBGGGTGGAGC-- --------------MGTCTMKCTCTGTKGCCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 310 Combined Motif Original Motif Reverse Complement AAAAGRCVACASWYMGTCTHGCTSKGTGGMSCAG GGATTTMKGACTTGCATGGG AAAAGRCVACASWYMGKMTTTCKGDSTKGCVYRGG Direction: Forward Position #: 16 Overlap #: 19 Alignment: AAAAGRCVACASWYMGTCTHGCTSKGTGGMSCAG- ---------------GGATTTMKGACTTGCATGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 145 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 145 Motif 7 Original Motif Original Motif GCCAGTCACAAAARGACAMA GTCTCWAMAAAAAAWAMAAA GYCWSWMAMAAAAARAMAAA Direction: Forward Position #: 1 Overlap #: 20 Alignment: GCCAGTCACAAAARGACAMA GTCTCWAMAAAAAAWAMAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 109 Combined Motif Original Motif Original Motif GYCWSWMAMAAAAARAMAAA GAGAGAGAGAGAGAGAGAGA GYCWSWMAVARARAGASARAGAGAGAGA Direction: Forward Position #: 9 Overlap #: 12 Alignment: GYCWSWMAMAAAAARAMAAA-------- --------GAGAGAGAGAGAGAGAGAGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 99 Combined Motif Original Motif Original Motif GYCWSWMAVARARAGASARAGAGAGAGA GCAAAKGACATGATYTCATT GYCWSWMAVARARMAAARGASAKRRWBWCATT Direction: Forward Position #: 13 Overlap #: 16 Alignment: GYCWSWMAVARARAGASARAGAGAGAGA---- ------------GCAAAKGACATGATYTCATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 294 Combined Motif Original Motif Original Motif GYCWSWMAVARARMAAARGASAKRRWBWCATT AGCTGTGAGAAGAGGGCCAC GYCWSWMAVARARMARMTGWGAGAAGADSRYYAC Direction: Forward Position #: 15 Overlap #: 18 Alignment: GYCWSWMAVARARMAAARGASAKRRWBWCATT-- --------------AGCTGTGAGAAGAGGGCCAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 56 Combined Motif Original Motif Reverse Complement GYCWSWMAVARARMARMTGWGAGAAGADSRYYAC GCCKGGMKCMGTGGCTCAKG GYCWSWMAVARARMAGCHGDGAGMAGWGGVTCAYG Direction: Forward Position #: 16 Overlap #: 19 Alignment: GYCWSWMAVARARMARMTGWGAGAAGADSRYYAC- ---------------GCCKGGMKCMGTGGCTCAKG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 146 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 146 Motif 1 Reverse Complement Original Motif GGGGTGACAG GGGGTGACAGABGB KGRSWGACRGGGGG Direction: Backward Position #: 1 Overlap #: 10 Alignment: ----GGGGTGACAG GGGGTGACAGABGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 209 Combined Motif Original Motif Reverse Complement KGRSWGACRGGGGG ATGGGCTGACAG KGRSWRWSRGSKGRCAG Direction: Forward Position #: 6 Overlap #: 9 Alignment: KGRSWGACRGGGGG--- -----ATGGGCTGACAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 279 Combined Motif Original Motif Original Motif KGRSWRWSRGSKGRCAG GGGGGAGACATCACACR KGRSWRDGGGGAGACAKCACACR Direction: Forward Position #: 7 Overlap #: 11 Alignment: KGRSWRWSRGSKGRCAG------ ------GGGGGAGACATCACACR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 193 Combined Motif Original Motif Reverse Complement KGRSWRDGGGGAGACAKCACACR GKCTGTACCCCCATTGTAT KGRSWRDGGGKHKRYABCMCMMKTGTAT Direction: Forward Position #: 10 Overlap #: 14 Alignment: KGRSWRDGGGGAGACAKCACACR----- ---------GKCTGTACCCCCATTGTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 205 Combined Motif Reverse Complement Reverse Complement ATACARYYGYGVTKMRDYCCCHKWSMCR TGGGCTGCCAGATG ATACARYYGYGVTGVGCTSCCAGATVCR Direction: Forward Position #: 13 Overlap #: 14 Alignment: ATACARYYGYGVTKMRDYCCCHKWSMCR ------------TGGGCTGCCAGATG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 147 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 147 Motif 29 Reverse Complement Reverse Complement TCAATGGTGCCCAG MGTCTMKCTCTGTKGCCCAG MGTCTMTCWMTGKTGCCCAG Direction: Forward Position #: 7 Overlap #: 14 Alignment: ------TCAATGGTGCCCAG MGTCTMKCTCTGTKGCCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 332 Combined Motif Original Motif Reverse Complement MGTCTMTCWMTGKTGCCCAG GTTTAACCATTGAGGGCCAG MGTCTMTCDWTKAWSCMYWGAGGGCCAG Direction: Forward Position #: 9 Overlap #: 12 Alignment: MGTCTMTCWMTGKTGCCCAG-------- --------GTTTAACCATTGAGGGCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 135 Combined Motif Reverse Complement Reverse Complement CTGGCCCTCWKYGSWTRAWHGARAGACY CTGGGCAACAAGAG CTGGCCCTCWKYSTGGGMAASAARRRCY Direction: Forward Position #: 13 Overlap #: 14 Alignment: CTGGCCCTCWKYGSWTRAWHGARAGACY ------------CTGGGCAACAAGAG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 67 Combined Motif Original Motif Original Motif CTGGCCCTCWKYSTGGGMAASAARRRCY CTGGGCTCCTGAGTCTGGTG CTGGCCCTCWKYCTGGGCWMCWRAGTCTGGTG Direction: Forward Position #: 13 Overlap #: 16 Alignment: CTGGCCCTCWKYSTGGGMAASAARRRCY---- ------------CTGGGCTCCTGAGTCTGGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 65 Combined Motif Original Motif Reverse Complement CTGGCCCTCWKYCTGGGCWMCWRAGTCTGGTG CGGCGCTGMGCTCGATTTCT CTGGCCCTCWKYCTBGGCKCYGVRSTCKRKTKCT Direction: Forward Position #: 15 Overlap #: 18 Alignment: CTGGCCCTCWKYCTGGGCWMCWRAGTCTGGTG-- --------------CGGCGCTGMGCTCGATTTCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 148 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 148 Motif 109 Original Motif Original Motif AAAGAGAGTCAGCGAAG GAGAGAGAGAGAGAGAGAGA GAARAGAGAGWSAGMGARRG Direction: Backward Position #: 3 Overlap #: 17 Alignment: -AAAGAGAGTCAGCGAAG-- GAGAGAGAGAGAGAGAGAGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 48 Combined Motif Reverse Complement Original Motif CMKTCYCTSWCTCTCTKTTC AGCTCCCAGCGTGAGCGACG CMKTCYCTRGCTCYCWGYKYGAGCGACG Direction: Forward Position #: 9 Overlap #: 12 Alignment: CMKTCYCTSWCTCTCTKTTC-------- --------AGCTCCCAGCGTGAGCGACG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 201 Combined Motif Original Motif Reverse Complement CMKTCYCTRGCTCYCWGYKYGAGCGACG ACCKTCGCGGTGAGTGTTAC CMKTCYCTRGCTMCCTKCGCGRKSRRYGTTAC Direction: Forward Position #: 13 Overlap #: 16 Alignment: CMKTCYCTRGCTCYCWGYKYGAGCGACG---- ------------ACCKTCGCGGTGAGTGTTAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 194 Combined Motif Original Motif Original Motif CMKTCYCTRGCTMCCTKCGCGRKSRRYGTTAC CAAGGGTATAYGAGTAGCTG CMKTCYCTRGCTMCCAWSGSKATVVRWGTWRCTG Direction: Forward Position #: 15 Overlap #: 18 Alignment: CMKTCYCTRGCTMCCTKCGCGRKSRRYGTTAC-- --------------CAAGGGTATAYGAGTAGCTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 312 Combined Motif Reverse Complement Original Motif CAGKWACWMBBATRSCSWTGGYAGCKAGMGARRG AGGACTGAGGGTGCCYRGGG CAGKWACWMBBATRSMGGASKKAGVGWGCSMRGGG Direction: Forward Position #: 16 Overlap #: 19 Alignment: CAGKWACWMBBATRSCSWTGGYAGCKAGMGARRG- ---------------AGGACTGAGGGTGCCYRGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 149 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 149 Motif 98 Reverse Complement Original Motif GGGTGCAGGMGGGCTGAGT AGTTCCGGGTGGGCGTGGG RGKTSCRGGYGGGCKKRGK Direction: Forward Position #: 1 Overlap #: 19 Alignment: GGGTGCAGGMGGGCTGAGT AGTTCCGGGTGGGCGTGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 82 Combined Motif Original Motif Reverse Complement RGKTSCRGGYGGGCKKRGK GCTGGCCCKGGTGCTAAGC RGKTSCRGSTGGSCBKGGTGCTAAGC Direction: Forward Position #: 8 Overlap #: 12 Alignment: RGKTSCRGGYGGGCKKRGK------- -------GCTGGCCCKGGTGCTAAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 321 Combined Motif Reverse Complement Reverse Complement GCTTAGCACCYBGSCCASCKGSARCM GCTCCACCCAGTTCGAGCTT GCTTAGCACCYGSBCCACCYRGWWCVAGCTT Direction: Forward Position #: 12 Overlap #: 15 Alignment: GCTTAGCACCYBGSCCASCKGSARCM----- -----------GCTCCACCCAGTTCGAGCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 144 Combined Motif Reverse Complement Reverse Complement AAGCTVGWWCKKGGTGGVSCKGGTGCTAAGC GGGCTCCCACAGTGCAGCGG AAGCTVGWWCKKGGKGSDCCSRSWGYKMAGCGG Direction: Forward Position #: 14 Overlap #: 18 Alignment: AAGCTVGWWCKKGGTGGVSCKGGTGCTAAGC-- -------------GGGCTCCCACAGTGCAGCGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Original Motif Reverse Complement AAGCTVGWWCKKGGKGSDCCSRSWGYKMAGCGG GGGTCAGGGAGTTCCCTTTC AAGCTVGWWCKKGGGGGTCMGGGAGTTCMSYKKC Direction: Forward Position #: 15 Overlap #: 19 Alignment: AAGCTVGWWCKKGGKGSDCCSRSWGYKMAGCGG- --------------GGGTCAGGGAGTTCCCTTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 150 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 150 Motif 115 Reverse Complement Original Motif TGTGCTAGCAAT ATGATCCAGCAATYCCACTH HWGYRMTMSCAMTATGATCC Direction: Backward Position #: 2 Overlap #: 12 Alignment: -------TGTGCTAGCAAT- ATGATCCAGCAATYCCACTH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 306 Combined Motif Original Motif Reverse Complement HWGYRMTMSCAMTATGATCC CAAGCGCCAGCTCATGTC HWGYRMTMCMAVYRYSAKCYCATGTC Direction: Forward Position #: 9 Overlap #: 12 Alignment: HWGYRMTMSCAMTATGATCC------ --------CAAGCGCCAGCTCATGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 317 Combined Motif Original Motif Reverse Complement HWGYRMTMCMAVYRYSAKCYCATGTC ATGTTGTAGCATGT HWGYRMTMCMAATGTBRTMKCATGTC Direction: Forward Position #: 12 Overlap #: 14 Alignment: HWGYRMTMCMAVYRYSAKCYCATGTC -----------ATGTTGTAGCATGT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 192 Combined Motif Original Motif Original Motif HWGYRMTMCMAATGTBRTMKCATGTC GAATCCTGGGACAGCCTGT HWGYRMTMCMARWRTCSTRGSAYRKCCTGT Direction: Forward Position #: 12 Overlap #: 15 Alignment: HWGYRMTMCMAATGTBRTMKCATGTC---- -----------GAATCCTGGGACAGCCTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 284 Combined Motif Original Motif Original Motif HWGYRMTMCMARWRTCSTRGSAYRKCCTGT CATTTGGGAGCCCATTGA HWGYRMTMCMARWMWYBTGGSABVBCMTKKA Direction: Forward Position #: 14 Overlap #: 17 Alignment: HWGYRMTMCMARWRTCSTRGSAYRKCCTGT- -------------CATTTGGGAGCCCATTGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 151 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 151 Motif 317 Reverse Complement Original Motif BCTACAATG ACATGCTACAACAT ACATGCTACAAYRT Direction: Forward Position #: 5 Overlap #: 9 Alignment: ----BCTACAATG- ACATGCTACAACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 144 Original Motif Reverse Complement ACATGCTACAAYRT GGGCTCCCACAGTGCAGCGG GGGCTCMCAYRSTRCARCGK Direction: Forward Position #: 7 Overlap #: 14 Alignment: ------ACATGCTACAAYRT GGGCTCCCACAGTGCAGCGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 106 Combined Motif Reverse Complement Original Motif YCGKTGKASKKTGYGAGCCC ATTGGTGTATTTACAATCCC YCGKTGKAVTTKGTGWRYYYACAATCCC Direction: Forward Position #: 9 Overlap #: 12 Alignment: YCGKTGKASKKTGYGAGCCC-------- --------ATTGGTGTATTTACAATCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 344 Combined Motif Original Motif Reverse Complement YCGKTGKAVTTKGTGWRYYYACAATCCC GTCATCTCCTATG YCGKTGKAVTTKGTSAKCTCMYAWKCCC Direction: Forward Position #: 13 Overlap #: 13 Alignment: YCGKTGKAVTTKGTGWRYYYACAATCCC ------------GTCATCTCCTATG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 258 Combined Motif Reverse Complement Original Motif GGGRWTMYGAGRTSACYAABTRCARCGK CCACCAACAGTGTAY GGGRWTMYGAGRYCACCAACWGYRTMBK Direction: Forward Position #: 13 Overlap #: 15 Alignment: GGGRWTMYGAGRTSACYAABTRCARCGK ------------CCACCAACAGTGTAY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 152 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 152 Motif 357 Reverse Complement Reverse Complement TTATTTTA TAATTTTATGTGTCAACTTG TWATTTTATGTGTCAACTTG Direction: Forward Position #: 1 Overlap #: 8 Alignment: TTATTTTA------------ TAATTTTATGTGTCAACTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 103 Combined Motif Original Motif Reverse Complement TWATTTTATGTGTCAACTTG TTATTTCACTT TWATTTTATKWKTYMACTTG Direction: Forward Position #: 9 Overlap #: 11 Alignment: TWATTTTATGTGTCAACTTG --------TTATTTCACTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 195 Combined Motif Reverse Complement Original Motif CAAGTYMAYWRATAAAATWA TAAAAGACTACAWATTGGGT CAAGTYMATAAAWRAMWWYAWATTGGGT Direction: Forward Position #: 9 Overlap #: 12 Alignment: CAAGTYMAYWRATAAAATWA-------- --------TAAAAGACTACAWATTGGGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 233 Combined Motif Reverse Complement Original Motif ACCCAATWTKWWRTKWTTTATYMACTTG GTTAACTGTAAAACAGCCT ACCCAATWTKWWGTTAWYTRTHAAMYWGCCT Direction: Forward Position #: 13 Overlap #: 16 Alignment: ACCCAATWTKWWRTKWTTTATYMACTTG--- ------------GTTAACTGTAAAACAGCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 328 Combined Motif Reverse Complement Original Motif AGGCWMYTTHAMAKWTAACWWYAWATTGGGT GATACAAAATCAATGTR AGGCWMYTTHAMAGATAMMAAAWCAWTGKRT Direction: Forward Position #: 14 Overlap #: 17 Alignment: AGGCWMYTTHAMAKWTAACWWYAWATTGGGT -------------GATACAAAATCAATGTR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 153 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 153 Motif 61 Original Motif Original Motif CACTAGGGAGTGCC GGATCCACTGGGTGAAGCCA ACACTRGGKRRWGCCGGATC Direction: Backward Position #: 2 Overlap #: 14 Alignment: -----CACTAGGGAGTGCC- GGATCCACTGGGTGAAGCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 84 Combined Motif Reverse Complement Reverse Complement GATCCGGCWKKRCCKAGTGT GGCACTGCTGGGGGACCCAG GATCCGGCDGBACYGMKKGKGGACCCAG Direction: Forward Position #: 9 Overlap #: 12 Alignment: GATCCGGCWKKRCCKAGTGT-------- --------GGCACTGCTGGGGGACCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 13 Combined Motif Original Motif Original Motif GATCCGGCDGBACYGMKKGKGGACCCAG AAGCAGGGCGAGGCATTGCC GATCCGGCDGBAMAGCDGGGSGASSCAKTGCC Direction: Forward Position #: 13 Overlap #: 16 Alignment: GATCCGGCDGBACYGMKKGKGGACCCAG---- ------------AAGCAGGGCGAGGCATTGCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 202 Combined Motif Reverse Complement Original Motif GGCAYTGSSTCSCCCDGCTYTBCHGCCGGATC ACACATCACAAAGCAGTTTC GGCAYTGSSTCSCCMBRCATYDCARMSSRRTYTC Direction: Forward Position #: 15 Overlap #: 18 Alignment: GGCAYTGSSTCSCCCDGCTYTBCHGCCGGATC-- --------------ACACATCACAAAGCAGTTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 332 Combined Motif Original Motif Original Motif GGCAYTGSSTCSCCMBRCATYDCARMSSRRTYTC CTGGCCCTCAATGGTTAAAC GGCAYTGSSTCSCCMCWSRYCCYMAATGGWTAWMC Direction: Forward Position #: 16 Overlap #: 19 Alignment: GGCAYTGSSTCSCCMBRCATYDCARMSSRRTYTC- ---------------CTGGCCCTCAATGGTTAAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 154 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 154 Motif 262 Original Motif Reverse Complement CATTAGATTCTCATAGGA GACAGGAGATTAACACTGAG CAKKAGATTMWCAYWGRRGA Direction: Backward Position #: 1 Overlap #: 18 Alignment: --CATTAGATTCTCATAGGA GACAGGAGATTAACACTGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 299 Combined Motif Reverse Complement Reverse Complement TCMKCWKTGWRAATCTRRTG TTGGAGGTTCTAGCAGGG TCMKCWKTKTGRAKSTDMTRGCAGGG Direction: Forward Position #: 9 Overlap #: 12 Alignment: TCMKCWKTGWRAATCTRRTG------ --------TTGGAGGTTCTAGCAGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Combined Motif Reverse Complement Original Motif CCCTGCKARDASRTKCAYAYWGRRGA CACCAGGAGATTATATCCCR CCCTGCKARDACAYCMVBASAKWAKATCCCR Direction: Forward Position #: 12 Overlap #: 15 Alignment: CCCTGCKARDASRTKCAYAYWGRRGA----- -----------CACCAGGAGATTATATCCCR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Combined Motif Original Motif Reverse Complement CCCTGCKARDACAYCMVBASAKWAKATCCCR TCACKMGGGAAGCGCAAG CCCTGCKARDACATCACKAGRGAAGMKCMMG Direction: Forward Position #: 14 Overlap #: 18 Alignment: CCCTGCKARDACAYCMVBASAKWAKATCCCR -------------TCACKMGGGAAGCGCAAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 160 Combined Motif Original Motif Original Motif CCCTGCKARDACATCACKAGRGAAGMKCMMG AAATTACCCAGTCTCAGGTA CCCTGCKARDACAWMAYTASVSARKCTCAVGTA Direction: Forward Position #: 14 Overlap #: 18 Alignment: CCCTGCKARDACATCACKAGRGAAGMKCMMG-- -------------AAATTACCCAGTCTCAGGTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 155 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 155 Motif 331 Reverse Complement Reverse Complement GCCKCCCCGTCCGGGAGGGA GCCTCCTTGAGCTGTGGTGG GCCTCCYYGWSCKGKRGKGR Direction: Forward Position #: 1 Overlap #: 20 Alignment: GCCKCCCCGTCCGGGAGGGA GCCTCCTTGAGCTGTGGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 201 Combined Motif Original Motif Reverse Complement GCCTCCYYGWSCKGKRGKGR ACCKTCGCGGTGAGTGTTAC GCCTCCYYRHCYTSGVGGKGAGTGTTAC Direction: Forward Position #: 9 Overlap #: 12 Alignment: GCCTCCYYGWSCKGKRGKGR-------- --------ACCKTCGCGGTGAGTGTTAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 235 Combined Motif Original Motif Original Motif GCCTCCYYRHCYTSGVGGKGAGTGTTAC TCCAAATGGGAGAAATTGGC GCCTCCYYRHCYTCSARRTGRGWGWWAYTGGC Direction: Forward Position #: 13 Overlap #: 16 Alignment: GCCTCCYYRHCYTSGVGGKGAGTGTTAC---- ------------TCCAAATGGGAGAAATTGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 100 Combined Motif Reverse Complement Reverse Complement GCCAKTWWCWCKCAKKTSGAKGDKMKGGAGGC CGCGGCGCTTGCGGGCCAGC GCCAKTWWCWCKCABKYGGMGSTTVBGGRSSMGC Direction: Forward Position #: 15 Overlap #: 18 Alignment: GCCAKTWWCWCKCAKKTSGAKGDKMKGGAGGC-- --------------CGCGGCGCTTGCGGGCCAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 165 Combined Motif Original Motif Original Motif GCCAKTWWCWCKCABKYGGMGSTTVBGGRSSMGC ATCTGACAGGAGGYRGAGCT GCCAKTWWCWCKCABRTSKRRCWKGAGGVGGAGCT Direction: Forward Position #: 16 Overlap #: 19 Alignment: GCCAKTWWCWCKCABKYGGMGSTTVBGGRSSMGC- ---------------ATCTGACAGGAGGYRGAGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 156 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 156 Motif 27 Original Motif Original Motif CACTTCCCAGAC CACTTCCCAGACGGGGCG GGGGCGCACTTCCCAGAC Direction: Backward Position #: 7 Overlap #: 12 Alignment: CACTTCCCAGAC------ CACTTCCCAGACGGGGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 95 Combined Motif Reverse Complement Reverse Complement GTCTGGGAAGTGCGCCCC CACCTCCCAGACMGGGT GTCTGGGMASYKCSCMSMCMGGGT Direction: Forward Position #: 8 Overlap #: 11 Alignment: GTCTGGGAAGTGCGCCCC------ -------CACCTCCCAGACMGGGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 45 Combined Motif Original Motif Original Motif GTCTGGGMASYKCSCMSMCMGGGT TGCCCAGTCTGGAAAGTG GTCTGGGMASTGCCCAGTCTGGRWAGTG Direction: Forward Position #: 11 Overlap #: 14 Alignment: GTCTGGGMASYKCSCMSMCMGGGT---- ----------TGCCCAGTCTGGAAAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 74 Combined Motif Original Motif Original Motif GTCTGGGMASTGCCCAGTCTGGRWAGTG CACTTCCTAGATGG GTCTGGGMASTGCMCWKCCTRGRTRGTG Direction: Forward Position #: 13 Overlap #: 14 Alignment: GTCTGGGMASTGCCCAGTCTGGRWAGTG ------------CACTTCCTAGATGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 72 Combined Motif Original Motif Original Motif GTCTGGGMASTGCMCWKCCTRGRTRGTG CGCACTCCTCAGCC GTCTGGGMASTGCGCAYTCYTSAKMSTG Direction: Forward Position #: 13 Overlap #: 14 Alignment: GTCTGGGMASTGCMCWKCCTRGRTRGTG ------------CGCACTCCTCAGCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 157 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 157 Motif 128 Reverse Complement Reverse Complement CCGCGCCGTGCGC CMGCTCCGAGTGCGG CMGCKCCGWGYGCGG Direction: Forward Position #: 1 Overlap #: 13 Alignment: CCGCGCCGTGCGC-- CMGCTCCGAGTGCGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 155 Original Motif Original Motif CMGCKCCGWGYGCGG TCCCTCCCGGACGGGGYGGC TCCCTCCCGSDCSGDGYGSSG Direction: Forward Position #: 7 Overlap #: 14 Alignment: ------CMGCKCCGWGYGCGG TCCCTCCCGGACGGGGYGGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 13 Combined Motif Original Motif Original Motif TCCCTCCCGSDCSGDGYGSSG AAGCAGGGCGAGGCATTGCC TCCCTCCCRAGCAGGGCGAGGCATTGCC Direction: Forward Position #: 9 Overlap #: 13 Alignment: TCCCTCCCGSDCSGDGYGSSG------- --------AAGCAGGGCGAGGCATTGCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 65 Combined Motif Reverse Complement Reverse Complement GGCAATGCCTCGCCCTGCTKGGGAGGGA CGGCGCTGMGCTCGATTTCT GGCAATGCCTCGCSSYGCTGVGSWSGRWTTCT Direction: Forward Position #: 13 Overlap #: 16 Alignment: GGCAATGCCTCGCCCTGCTKGGGAGGGA---- ------------CGGCGCTGMGCTCGATTTCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 136 Combined Motif Reverse Complement Reverse Complement AGAAWKCSWSCVCAGCKSSGCGAGGCATTGCC CCCCGGGCAGTGAGGG AGAAWKCSWSCVCASCCSGGSSAGKSAKKGCC Direction: Forward Position #: 15 Overlap #: 16 Alignment: AGAAWKCSWSCVCAGCKSSGCGAGGCATTGCC --------------CCCCGGGCAGTGAGGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 158 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 158 Motif 280 Reverse Complement Reverse Complement TCAGCAAACTA ACATCMTCTGAAATCTAGG ACATCMTCWGMAAWCTAGG Direction: Forward Position #: 7 Overlap #: 11 Alignment: ------TCAGCAAACTA-- ACATCMTCTGAAATCTAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 23 Reverse Complement Reverse Complement CCTAGWTTRCWGARGATGT ACTCCCTAGTGAGATGAACC ACTCCCTASYKAGATKAMHSARGATGT Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------CCTAGWTTRCWGARGATGT ACTCCCTAGTGAGATGAACC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 97 Combined Motif Reverse Complement Original Motif ACATCMTSDYTYATCTRMSTAGGGAGT AAGATGGCCGAAT ACATCMTSDYTAAKMTGRCYRRRKAGT Direction: Forward Position #: 12 Overlap #: 13 Alignment: ACATCMTSDYTYATCTRMSTAGGGAGT -----------AAGATGGCCGAAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 129 Combined Motif Original Motif Original Motif ACATCMTSDYTAAKMTGRCYRRRKAGT AAGAGGTTTAATTGRCTCA ACATCMTSDYTAAGAKGBYTAADKRGYTCA Direction: Forward Position #: 12 Overlap #: 16 Alignment: ACATCMTSDYTAAKMTGRCYRRRKAGT--- -----------AAGAGGTTTAATTGRCTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 38 Combined Motif Reverse Complement Original Motif TGAMCKRDTTAMVCRTCTTAMHSARGATGT GCAGTGAGCYRAGA TGAMCKRDTTAMVSVWSTKAVCCARGATGT Direction: Forward Position #: 14 Overlap #: 14 Alignment: TGAMCKRDTTAMVCRTCTTAMHSARGATGT -------------GCAGTGAGCYRAGA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 159 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 159 Motif 144 Reverse Complement Reverse Complement TGCTCACACAAAGCCTGT GGGCTCCCACAGTGCAGCGG GKGCTCMCACARWGCMKSKG Direction: Backward Position #: 2 Overlap #: 18 Alignment: -TGCTCACACAAAGCCTGT- GGGCTCCCACAGTGCAGCGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 129 Combined Motif Original Motif Original Motif GKGCTCMCACARWGCMKSKG AAGAGGTTTAATTGRCTCA GKGCTCMCAMRADGYHTVDKTGRCTCA Direction: Forward Position #: 9 Overlap #: 12 Alignment: GKGCTCMCACARWGCMKSKG------- --------AAGAGGTTTAATTGRCTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 261 Combined Motif Original Motif Reverse Complement GKGCTCMCAMRADGYHTVDKTGRCTCA TAGTGGTGATTTSTGAGAT GKGCTCMCAMRWAGTDKHGDTKWCTSAGAT Direction: Forward Position #: 12 Overlap #: 16 Alignment: GKGCTCMCAMRADGYHTVDKTGRCTCA--- -----------TAGTGGTGATTTSTGAGAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 115 Combined Motif Original Motif Reverse Complement GKGCTCMCAMRWAGTDKHGDTKWCTSAGAT HAGTGGKATTGCTGGATCAT GKGCTCMCAMRWAGWGTKGDWTTSYTRGATCAT Direction: Forward Position #: 14 Overlap #: 17 Alignment: GKGCTCMCAMRWAGTDKHGDTKWCTSAGAT--- -------------HAGTGGKATTGCTGGATCAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 105 Combined Motif Original Motif Reverse Complement GKGCTCMCAMRWAGWGTKGDWTTSYTRGATCAT GGAGGTGTGGAGGGAGAGGC GKGCTCMCAMRWAGDGWGGTRTKGAGGGAKMRKC Direction: Forward Position #: 15 Overlap #: 19 Alignment: GKGCTCMCAMRWAGWGTKGDWTTSYTRGATCAT- --------------GGAGGTGTGGAGGGAGAGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 160 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 160 Motif 321 Reverse Complement Original Motif TACCTGAGACTGGGTAATTT AAGCTCGAACTGGGTGGAGC WASCTSRRACTGGGTRRWKY Direction: Backward Position #: 1 Overlap #: 20 Alignment: TACCTGAGACTGGGTAATTT AAGCTCGAACTGGGTGGAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 308 Combined Motif Reverse Complement Original Motif KRWKMACCCAGTKKSAGSTW AAATTAGGCCAATTAATAAC KRWKMACCMARTTWGRSCWATTAATAAC Direction: Forward Position #: 9 Overlap #: 12 Alignment: KRWKMACCCAGTKKSAGSTW-------- --------AAATTAGGCCAATTAATAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 336 Combined Motif Reverse Complement Reverse Complement GTTATTAATWGSMCWAAMTYGGTRRWKY CAGGTGGTKTTTGGTTACAT GTTATTAATWGSCMKRWVKTGKTTGDTTACAT Direction: Forward Position #: 13 Overlap #: 16 Alignment: GTTATTAATWGSMCWAAMTYGGTRRWKY---- ------------CAGGTGGTKTTTGGTTACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 254 Combined Motif Reverse Complement Original Motif ATGTAAHCAARCARVWMYYGSCWATTAATAAC AAAATCACAAGCATTCCTAT ATGTAAHCAARCARAAAATSVCWAKYAWTMMYAT Direction: Forward Position #: 15 Overlap #: 18 Alignment: ATGTAAHCAARCARVWMYYGSCWATTAATAAC-- --------------AAAATCACAAGCATTCCTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 357 Combined Motif Reverse Complement Reverse Complement ATMYYAWTMYTWGBSATTTTKTGKTTGDTTACAT TAATTTTATGTGTCAACTTG ATMYYAWTMYTWGBSWAWTTTTRTKTGTYWACWTG Direction: Forward Position #: 16 Overlap #: 19 Alignment: ATMYYAWTMYTWGBSATTTTKTGKTTGDTTACAT- ---------------TAATTTTATGTGTCAACTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 161 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 161 Motif 26 Original Motif Reverse Complement GAGGAGGRGGAGGDGGV TMGGGAGGCTGAGGCAGGAG GGRGRRGSTGRRGSAGGATM Direction: Backward Position #: 2 Overlap #: 17 Alignment: --GAGGAGGRGGAGGDGGV- TMGGGAGGCTGAGGCAGGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 178 Combined Motif Reverse Complement Original Motif RATCCTSCMKCASCKKCMCC ACTGTCTTCCACCTCCACAT RATCCTSCAYYRBCTTCCMCCTCCACAT Direction: Forward Position #: 9 Overlap #: 12 Alignment: RATCCTSCMKCASCKKCMCC-------- --------ACTGTCTTCCACCTCCACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 109 Combined Motif Reverse Complement Original Motif ATGTGGAGGYGGAAGVMMKTGSAGGATM GAGAGAGAGAGAGAGAGAGA ATGTGGAGGYGGRAGASAGWGRRRGAKAGAGA Direction: Forward Position #: 13 Overlap #: 16 Alignment: ATGTGGAGGYGGAAGVMMKTGSAGGATM---- ------------GAGAGAGAGAGAGAGAGAGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 105 Combined Motif Reverse Complement Original Motif TCTCTRTCKMKCWCTSTCTMCCMCCTCCACAT GCCTCTCCCTCCACACCTCC TCTCTRTCKMKCWCKCYYYYCCCYCYMCACMTCC Direction: Forward Position #: 15 Overlap #: 18 Alignment: TCTCTRTCKMKCWCTSTCTMCCMCCTCCACAT-- --------------GCCTCTCCCTCCACACCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Combined Motif Original Motif Reverse Complement TCTCTRTCKMKCWCKCYYYYCCCYCYMCACMTCC GCCACCAMGCCMKGCTAAT TCTCTRTCKMKCWCKSCCMCCMCBCCMSRCHWMY Direction: Forward Position #: 16 Overlap #: 19 Alignment: TCTCTRTCKMKCWCKCYYYYCCCYCYMCACMTCC ---------------GCCACCAMGCCMKGCTAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 162 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 162 Motif 166 Original Motif Original Motif ATGGACCTTG AAGGGACATTKGAG AAKGGACMTTKGAG Direction: Forward Position #: 2 Overlap #: 10 Alignment: -ATGGACCTTG--- AAGGGACATTKGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 104 Original Motif Original Motif AAKGGACMTTKGAG CAACATGGATGRARCTGGAG CAACATRRWKGAMMYTGGAG Direction: Forward Position #: 7 Overlap #: 14 Alignment: ------AAKGGACMTTKGAG CAACATGGATGRARCTGGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 306 Combined Motif Reverse Complement Original Motif CTCCAMYRTCRWKMATGTTG GACATGAGCTGGCGCTTG CTCCAMYRKMMATGAKSTKGCGCTTG Direction: Forward Position #: 9 Overlap #: 12 Alignment: CTCCAMYRTCRWKMATGTTG------ --------GACATGAGCTGGCGCTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 171 Combined Motif Reverse Complement Original Motif CAAGCGCYASYTCATRYYMMYTGGAG AAAAGTCCACAGTCCAAAGT CAAGCGCYASYWAAWGTCCACWGKMSAAAGT Direction: Forward Position #: 12 Overlap #: 15 Alignment: CAAGCGCYASYTCATRYYMMYTGGAG----- -----------AAAAGTCCACAGTCCAAAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 322 Combined Motif Original Motif Original Motif CAAGCGCYASYWAAWGTCCACWGKMSAAAGT AGGGCCTTTGCASWTGC CAAGCGCYASYWAARGKCCWYTGBASAWRST Direction: Forward Position #: 14 Overlap #: 17 Alignment: CAAGCGCYASYWAAWGTCCACWGKMSAAAGT -------------AGGGCCTTTGCASWTGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 163 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 163 Motif 331 Reverse Complement Original Motif GGAGCCCACGGAGG CCACCACAGCTCAAGGAGGC CRSAGCYCAMGGAGGCCACC Direction: Backward Position #: 2 Overlap #: 14 Alignment: -----GGAGCCCACGGAGG- CCACCACAGCTCAAGGAGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 144 Combined Motif Original Motif Original Motif CRSAGCYCAMGGAGGCCACC CCGCTGCACTGTGGGAGCCC CRSAGCYCMCGSWGSMCWSYGGGAGCCC Direction: Forward Position #: 9 Overlap #: 12 Alignment: CRSAGCYCAMGGAGGCCACC-------- --------CCGCTGCACTGTGGGAGCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 48 Combined Motif Reverse Complement Reverse Complement GGGCTCCCMSWGYSCWSCGRGKGCTSMG CGTCGCTCACGCTGGGAGCT GGGCTCCCMSWGCGYHGCKVRBGCTGSGAGCT Direction: Forward Position #: 13 Overlap #: 16 Alignment: GGGCTCCCMSWGYSCWSCGRGKGCTSMG---- ------------CGTCGCTCACGCTGGGAGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 84 Combined Motif Reverse Complement Reverse Complement AGCTCSCAGCBKVRGCDMCGCWSYGGGAGCCC GGCACTGCTGGGGGACCCAG AGCTCSCAGCBKVRGSVACKSCKKGGGRRCCCAG Direction: Forward Position #: 15 Overlap #: 18 Alignment: AGCTCSCAGCBKVRGCDMCGCWSYGGGAGCCC-- --------------GGCACTGCTGGGGGACCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 105 Combined Motif Original Motif Reverse Complement AGCTCSCAGCBKVRGSVACKSCKKGGGRRCCCAG GGAGGTGTGGAGGGAGAGGC AGCTCSCAGCBKVRGGGASGBBTGGRGGGMSMRGC Direction: Forward Position #: 16 Overlap #: 19 Alignment: AGCTCSCAGCBKVRGSVACKSCKKGGGRRCCCAG- ---------------GGAGGTGTGGAGGGAGAGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 164 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 164 Motif 165 Original Motif Reverse Complement AGCCCCGGTTCCCGCYCGC AGCTCMKCCTCCTGTCAGAT TAGCYCCGSYTCCYGYCMGM Direction: Backward Position #: 2 Overlap #: 19 Alignment: AGCCCCGGTTCCCGCYCGC- AGCTCMKCCTCCTGTCAGAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 96 Combined Motif Reverse Complement Reverse Complement YCYGKCMGGAMSCGGKGCTA GGAGCCGGCTCCCTCAGCTT YCYGKCMGGRAGCSGGSYYMCTCAGCTT Direction: Forward Position #: 9 Overlap #: 12 Alignment: YCYGKCMGGAMSCGGKGCTA-------- --------GGAGCCGGCTCCCTCAGCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 119 Combined Motif Reverse Complement Reverse Complement AAGCTGAGRKMSCCSGCTKCCYGYCMGM KKCACCTTGATCTTGGACTT AAGCTGAGRKMSBBSRCYTYSHKCYHGVACTT Direction: Forward Position #: 13 Overlap #: 16 Alignment: AAGCTGAGRKMSCCSGCTKCCYGYCMGM---- ------------KKCACCTTGATCTTGGACTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 139 Combined Motif Original Motif Original Motif AAGCTGAGRKMSBBSRCYTYSHKCYHGVACTT AGCCYCTGGYAACCAYYAWT AAGCTGAGRKMSBBAGCCTCBVGYWASCACTWWT Direction: Forward Position #: 15 Overlap #: 18 Alignment: AAGCTGAGRKMSBBSRCYTYSHKCYHGVACTT-- --------------AGCCYCTGGYAACCAYYAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Original Motif Reverse Complement AAGCTGAGRKMSBBAGCCTCBVGYWASCACTWWT ARCTCCTGKSCTCAAGKGAT AAGCTGAGRKMSBBARVCTCCKGBVMTCAMKTKWT Direction: Forward Position #: 16 Overlap #: 19 Alignment: AAGCTGAGRKMSBBAGCCTCBVGYWASCACTWWT- ---------------ARCTCCTGKSCTCAAGKGAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 165 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 165 Motif 52 Reverse Complement Reverse Complement AGCTCMKCCTCCTGTCAGAT GGTGGAGCTGCCTGCCAGTC RGYKSAGCYKCCTGYCAGWY Direction: Backward Position #: 1 Overlap #: 20 Alignment: AGCTCMKCCTCCTGTCAGAT GGTGGAGCTGCCTGCCAGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 294 Combined Motif Reverse Complement Reverse Complement KWCTGKCAGGRMGCTSYKCM GTGGCCCTCTTCTCACAGCT KWCTGKCAGKGRSCYTCTYCTCACAGCT Direction: Forward Position #: 9 Overlap #: 12 Alignment: KWCTGKCAGGRMGCTSYKCM-------- --------GTGGCCCTCTTCTCACAGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 349 Combined Motif Reverse Complement Original Motif AGCTGTGAGMAGAKGSMCRCTGYCAGWY AGAGCCAAATCATGARTGAA AGCTGTGAGMAGAGRGCCAMWKCMWGABTGAA Direction: Forward Position #: 13 Overlap #: 16 Alignment: AGCTGTGAGMAGAKGSMCRCTGYCAGWY---- ------------AGAGCCAAATCATGARTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 105 Combined Motif Reverse Complement Original Motif TTCABTCWYGRWYTGGCKCTCTYCTCACAGCT GCCTCTCCCTCCACACCTCC TTCABTCWYGRWYTGSCTCTCYCYYCACASCTCC Direction: Forward Position #: 15 Overlap #: 18 Alignment: TTCABTCWYGRWYTGGCKCTCTYCTCACAGCT-- --------------GCCTCTCCCTCCACACCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Reverse Complement Reverse Complement GGAGSTGTGMMGKGAGAGSCAMWKCMWGABTGAA ARCTCCTGKSCTCAAGKGAT GGAGSTGTGMMGKGARASKCMHKKSMTSAVKGVAT Direction: Forward Position #: 16 Overlap #: 19 Alignment: GGAGSTGTGMMGKGAGAGSCAMWKCMWGABTGAA- ---------------ARCTCCTGKSCTCAAGKGAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 166 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 166 Motif 305 Original Motif Original Motif AAGGGACATTKGAG AATGACCAATTGAGAGC AGCAAKGRMCAWTTGAG Direction: Backward Position #: 4 Overlap #: 14 Alignment: AAGGGACATTKGAG--- AATGACCAATTGAGAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 329 Combined Motif Reverse Complement Original Motif CTCAAWTGRMCRTTGCT GGGAGGGATATATTAGC CTCAAWKGGASGKWKMTATTAGC Direction: Forward Position #: 7 Overlap #: 11 Alignment: CTCAAWTGRMCRTTGCT------ ------GGGAGGGATATATTAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 227 Combined Motif Reverse Complement Reverse Complement GCTAATARYWYCSTCCYWTTGAG ATTCAASATGAGATTTGGG GCTAATARYWTYCWMCMTKWGAKTTGGG Direction: Forward Position #: 10 Overlap #: 14 Alignment: GCTAATARYWYCSTCCYWTTGAG----- ---------ATTCAASATGAGATTTGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 176 Combined Motif Original Motif Reverse Complement GCTAATARYWTYCWMCMTKWGAKTTGGG AACAACASACACTGGGGCCT GCTAATARYWTYMAMMAYDVRMDYTGGGGCCT Direction: Forward Position #: 13 Overlap #: 16 Alignment: GCTAATARYWTYCWMCMTKWGAKTTGGG---- ------------AACAACASACACTGGGGCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 99 Combined Motif Original Motif Reverse Complement GCTAATARYWTYMAMMAYDVRMDYTGGGGCCT AATGAKATCATGTCYTTTGC GCTAATARYWTYMAMAWBABAHHHTGKSBYYTGC Direction: Forward Position #: 15 Overlap #: 18 Alignment: GCTAATARYWTYMAMMAYDVRMDYTGGGGCCT-- --------------AATGAKATCATGTCYTTTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 167 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 167 Motif 62 Original Motif Original Motif CCGCTCCTGTGC AGGAACAGCTCCRGTCTAC ACCMGCTCCWGTSYAGGAA Direction: Backward Position #: 3 Overlap #: 12 Alignment: -----CCGCTCCTGTGC-- AGGAACAGCTCCRGTCTAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 144 Reverse Complement Reverse Complement TTCCTMSACWGGAGCRGGT GGGCTCCCACAGTGCAGCGG GGGCTCCCWYMSTRCASHGGAGCRGGT Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------TTCCTMSACWGGAGCRGGT GGGCTCCCACAGTGCAGCGG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 67 Combined Motif Original Motif Original Motif GGGCTCCCWYMSTRCASHGGAGCRGGT CTGGGCTCCTGAGTCTGGTG GGGCTCCCWYMCTGSRCTSSWGMGKSTGGTG Direction: Forward Position #: 12 Overlap #: 16 Alignment: GGGCTCCCWYMSTRCASHGGAGCRGGT---- -----------CTGGGCTCCTGAGTCTGGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 84 Combined Motif Reverse Complement Reverse Complement CACCASRCRCWSSAGKSCAGRMWGGGAGCCC GGCACTGCTGGGGGACCCAG CACCASRCRCWSSDGBMCWGVHDGGGRRCCCAG Direction: Forward Position #: 14 Overlap #: 18 Alignment: CACCASRCRCWSSAGKSCAGRMWGGGAGCCC-- -------------GGCACTGCTGGGGGACCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 165 Combined Motif Reverse Complement Reverse Complement CTGGGKMCCCHHVCWGYBCHSSWGMGKSTGGTG AGCTCMKCCTCCTGTCAGAT CTGGGKMCCCHHVCAGCTCMGCHKCSTGTSRKRT Direction: Forward Position #: 15 Overlap #: 19 Alignment: CTGGGKMCCCHHVCWGYBCHSSWGMGKSTGGTG- --------------AGCTCMKCCTCCTGTCAGAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 168 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 168 Motif 16 Original Motif Original Motif AGGTATTTCTCCCACC GAAAGGGAACTCCCTGACCC GAAAGGKAWYTCYCYSACCC Direction: Forward Position #: 4 Overlap #: 16 Alignment: ---AGGTATTTCTCCCACC- GAAAGGGAACTCCCTGACCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 235 Combined Motif Reverse Complement Reverse Complement GGGTSMGMGAMWTRCCTTTC GCCAATTTCTCCCATTTGGA GGGTSMGMGMMAWDYYYTYCCATTTGGA Direction: Forward Position #: 9 Overlap #: 12 Alignment: GGGTSMGMGAMWTRCCTTTC-------- --------GCCAATTTCTCCCATTTGGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 62 Combined Motif Reverse Complement Original Motif TCCAAATGGMAMKKDWTRYCYCYSACCC AGGAACAGCTCCRGTCTAC TCCAAATGGMAMAGGAWSWSCYCCASYCTAC Direction: Forward Position #: 13 Overlap #: 16 Alignment: TCCAAATGGMAMKKDWTRYCYCYSACCC--- ------------AGGAACAGCTCCRGTCTAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 106 Combined Motif Original Motif Reverse Complement TCCAAATGGMAMAGGAWSWSCYCCASYCTAC GGGATTGTAAATACACCAAT TCCAAATGGMAMAGGRATTGYHMMWVCMYMMAT Direction: Forward Position #: 14 Overlap #: 18 Alignment: TCCAAATGGMAMAGGAWSWSCYCCASYCTAC-- -------------GGGATTGTAAATACACCAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 102 Combined Motif Original Motif Reverse Complement TCCAAATGGMAMAGGRATTGYHMMWVCMYMMAT GTTGTGAGGATTAAATGAG TCCAAATGGMAMAGGDWKTGWDVATDMAHHVAK Direction: Forward Position #: 15 Overlap #: 19 Alignment: TCCAAATGGMAMAGGRATTGYHMMWVCMYMMAT --------------GTTGTGAGGATTAAATGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 169 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 169 Motif 235 Reverse Complement Reverse Complement TTTTATAGGATTTGGG GCCAATTTCTCCCATTTGGA WTTTMTMSSATTTGGRGCCA Direction: Backward Position #: 1 Overlap #: 16 Alignment: ----TTTTATAGGATTTGGG GCCAATTTCTCCCATTTGGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 227 Combined Motif Reverse Complement Reverse Complement TGGCKCCAAATSSYAYAAAW ATTCAASATGAGATTTGGG TGGCKCCAAWTCVWRHWRADATTTGGG Direction: Forward Position #: 9 Overlap #: 12 Alignment: TGGCKCCAAATSSYAYAAAW------- --------ATTCAASATGAGATTTGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 309 Combined Motif Original Motif Original Motif TGGCKCCAAWTCVWRHWRADATTTGGG CATTCTGGGGTCTGGAGGAY TGGCKCCAAWTCATDCTGRGRTYTGGRGGAY Direction: Forward Position #: 12 Overlap #: 16 Alignment: TGGCKCCAAWTCVWRHWRADATTTGGG---- -----------CATTCTGGGGTCTGGAGGAY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 349 Combined Motif Original Motif Reverse Complement TGGCKCCAAWTCATDCTGRGRTYTGGRGGAY TTCAMTCATGATTTGGCTCT TGGCKCCAAWTCATTCWVDSATBWKKTGGMTCT Direction: Forward Position #: 14 Overlap #: 18 Alignment: TGGCKCCAAWTCATDCTGRGRTYTGGRGGAY-- -------------TTCAMTCATGATTTGGCTCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 165 Combined Motif Reverse Complement Original Motif AGARCCARRWBATSDVWGAATGAWTTGGRGCCA ATCTGACAGGAGGYRGAGCT AGARCCARRWBATSAHYKRAYRRDWKGSRGMSMT Direction: Forward Position #: 15 Overlap #: 19 Alignment: AGARCCARRWBATSDVWGAATGAWTTGGRGCCA- --------------ATCTGACAGGAGGYRGAGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 170 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 170 Motif 63 Reverse Complement Original Motif ATTGATMKCCAGGGTTGATT AGTGAGAACATRYRRTRTTT AKTGAKARCMWGSGKTGWTT Direction: Backward Position #: 1 Overlap #: 20 Alignment: ATTGATMKCCAGGGTTGATT AGTGAGAACATRYRRTRTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 332 Combined Motif Reverse Complement Original Motif AAWCARCSCWRGKTYTCAYT CTGGCCCTCAATGGTTAAAC AAWCARCSCTGGBYCTCAHTGGTTAAAC Direction: Forward Position #: 9 Overlap #: 12 Alignment: AAWCARCSCWRGKTYTCAYT-------- --------CTGGCCCTCAATGGTTAAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 55 Combined Motif Reverse Complement Reverse Complement GTTTAACCAHTGAGKBCCAGSGKTGWTT ATGGCTGAATAKTATTCCAT GTTTAACCAHTGAKGGCYRRVKATKATTCCAT Direction: Forward Position #: 13 Overlap #: 16 Alignment: GTTTAACCAHTGAGKBCCAGSGKTGWTT---- ------------ATGGCTGAATAKTATTCCAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 58 Combined Motif Original Motif Reverse Complement GTTTAACCAHTGAKGGCYRRVKATKATTCCAT GAAHCAACCKAAKTGTCCAT GTTTAACCAHTGAKGRMHVAABMKAATTSYMYAT Direction: Forward Position #: 15 Overlap #: 18 Alignment: GTTTAACCAHTGAKGGCYRRVKATKATTCCAT-- --------------GAAHCAACCKAAKTGTCCAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 177 Combined Motif Original Motif Original Motif GTTTAACCAHTGAKGRMHVAABMKAATTSYMYAT CCCGAAGCTGCRYRCTCGGT GTTTAACCAHTGAKGVCYVAAGCTGMKYGCHYAKT Direction: Forward Position #: 16 Overlap #: 19 Alignment: GTTTAACCAHTGAKGRMHVAABMKAATTSYMYAT- ---------------CCCGAAGCTGCRYRCTCGGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 171 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 171 Motif 144 Reverse Complement Original Motif ACTTTGGACTGTGGACTTTT CCGCTGCACTGTGGGAGCCC MCKYTGSACTGTGGRMKYYY Direction: Backward Position #: 1 Overlap #: 20 Alignment: ACTTTGGACTGTGGACTTTT CCGCTGCACTGTGGGAGCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 63 Combined Motif Reverse Complement Original Motif KKMRYMCCACAGTSCAMYGR AGTGAGAACATRYRRTRTTT KKMRYMCCASWGWGMACHKRYRRTRTTT Direction: Forward Position #: 9 Overlap #: 12 Alignment: KKMRYMCCACAGTSCAMYGR-------- --------AGTGAGAACATRYRRTRTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 115 Combined Motif Reverse Complement Original Motif AAAMAMMKMRHGTRCWCWSTGGRMKYYY ATGATCCAGCAATYCCACTH AAAMAMMKMRHGWDSAYHCWGSAATYCCACTH Direction: Forward Position #: 13 Overlap #: 16 Alignment: AAAMAMMKMRHGTRCWCWSTGGRMKYYY---- ------------ATGATCCAGCAATYCCACTH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 176 Combined Motif Reverse Complement Original Motif HAGTGGKATTSCWGDKTSDWCHKRYRRTRTTT AGGCCCCAGTGTSTGTTGTT HAGTGGKATTSCWGAGKCHHCAGDSKGTGTTKTT Direction: Forward Position #: 15 Overlap #: 18 Alignment: HAGTGGKATTSCWGDKTSDWCHKRYRRTRTTT-- --------------AGGCCCCAGTGTSTGTTGTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 202 Combined Motif Original Motif Reverse Complement HAGTGGKATTSCWGAGKCHHCAGDSKGTGTTKTT GAAACTGCTTTGTGATGTGT HAGTGGKATTSCWGAGAMACYRSTTTGTGWTGTKT Direction: Forward Position #: 16 Overlap #: 19 Alignment: HAGTGGKATTSCWGAGKCHHCAGDSKGTGTTKTT- ---------------GAAACTGCTTTGTGATGTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 172 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 172 Motif 356 Reverse Complement Reverse Complement TTCTGTTTCT CAGTCTGTGTCTTTTAATT TTTAATTKTCTGTKTCTCA Direction: Backward Position #: 8 Overlap #: 10 Alignment: --TTCTGTTTCT------- CAGTCTGTGTCTTTTAATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 145 Reverse Complement Reverse Complement TGAGAYACAGARAATTAAA TYTGTCMTTTTGTGACTGGC TYTGTCMTTKWGWBACWGRMAATTAAA Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------TGAGAYACAGARAATTAAA TYTGTCMTTTTGTGACTGGC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 175 Combined Motif Original Motif Reverse Complement TYTGTCMTTKWGWBACWGRMAATTAAA GCACTCTGTMTCTAGCT TYTGTCMTTKWGCAMYYKGHAWYTARMT Direction: Forward Position #: 12 Overlap #: 16 Alignment: TYTGTCMTTKWGWBACWGRMAATTAAA- -----------GCACTCTGTMTCTAGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 54 Combined Motif Original Motif Reverse Complement TYTGTCMTTKWGCAMYYKGHAWYTARMT TTTCTTTTCCTT TYTGTCMTTKWGTTHCYTKTMHTTARMT Direction: Forward Position #: 13 Overlap #: 12 Alignment: TYTGTCMTTKWGCAMYYKGHAWYTARMT ------------TTTCTTTTCCTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Original Motif ARMTAAHYARAMGHAACWYAARGACAMA GTCTCWAMAAAAAAWAMAAA ARMTAAHYARAMGTMWCWMAAARAMAAAMAAA Direction: Forward Position #: 13 Overlap #: 16 Alignment: ARMTAAHYARAMGHAACWYAARGACAMA---- ------------GTCTCWAMAAAAAAWAMAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 173 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 173 Motif 234 Reverse Complement Reverse Complement TTGTTTCCTT GTGTCKGGAGTTTGTTCCTT GTGTCKGGAGTTKKTTCCTT Direction: Forward Position #: 11 Overlap #: 10 Alignment: ----------TTGTTTCCTT GTGTCKGGAGTTTGTTCCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 41 Combined Motif Reverse Complement Original Motif AAGGAARRAACTCCRGACAC AAAYAAAAAAA AAGGAARRAAMTMMARAMAC Direction: Forward Position #: 9 Overlap #: 11 Alignment: AAGGAARRAACTCCRGACAC --------AAAYAAAAAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 54 Combined Motif Reverse Complement Reverse Complement GTRTMTYYAYTTKKTTCCTT TTTCTTTTCCTT GTRTMTYYWTTYTTTTCCTT Direction: Forward Position #: 9 Overlap #: 12 Alignment: GTRTMTYYAYTTKKTTCCTT --------TTTCTTTTCCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Reverse Complement GTRTMTYYWTTYTTTTCCTT TTTYTWTTTTTTYTWGAGAC GTRTMTYYTTTYTTTTYYTTYTWGAGAC Direction: Forward Position #: 9 Overlap #: 12 Alignment: GTRTMTYYWTTYTTTTCCTT-------- --------TTTYTWTTTTTTYTWGAGAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 158 Combined Motif Reverse Complement Reverse Complement GTCTCWAMAAMMAAAAMAAAMMARAMAC TCAGCAAACTA GTCTCWAMAAMMWMARCAAACTARAMAC Direction: Forward Position #: 13 Overlap #: 11 Alignment: GTCTCWAMAAMMAAAAMAAAMMARAMAC ------------TCAGCAAACTA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 174 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 174 Motif 205 Reverse Complement Original Motif ATCTGVTCACCCC CATCTGGCAGCCCA CATCTGGYMRCCCM Direction: Forward Position #: 2 Overlap #: 13 Alignment: -ATCTGVTCACCCC CATCTGGCAGCCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 320 Combined Motif Original Motif Reverse Complement CATCTGGYMRCCCM TGGGGCTCCAGATG CATCTKGKVGCYCCAGATG Direction: Forward Position #: 6 Overlap #: 9 Alignment: CATCTGGYMRCCCM----- -----TGGGGCTCCAGATG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 294 Original Motif Reverse Complement CATCTKGKVGCYCCAGATG GTGGCCCTCTTCTCACAGCT GTGGCCCTCWTCTCRCAGCTCCAGATG Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------CATCTKGKVGCYCCAGATG GTGGCCCTCTTCTCACAGCT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 38 Combined Motif Original Motif Original Motif GTGGCCCTCWTCTCRCAGCTCCAGATG GCAGTGAGCYRAGA GTGGCCCTCWTSYMGYRRSYCVAGATG Direction: Forward Position #: 12 Overlap #: 14 Alignment: GTGGCCCTCWTCTCRCAGCTCCAGATG -----------GCAGTGAGCYRAGA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 92 Combined Motif Reverse Complement Original Motif CATCTVGKSKMMCYMSAWGAGGGCCAC GGGGGCTGACCCCCCCACC CATCTVGKSKMGSGRGMTGASSSCCMCACC Direction: Forward Position #: 12 Overlap #: 16 Alignment: CATCTVGKSKMMCYMSAWGAGGGCCAC--- -----------GGGGGCTGACCCCCCCACC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 175 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 175 Motif 109 Reverse Complement Reverse Complement GCACTCTGTMTCTAGCT TCTCTCTCTCTCTCTCTCTC KCWCTCTSTCTCTMKCTCTC Direction: Forward Position #: 1 Overlap #: 17 Alignment: GCACTCTGTMTCTAGCT--- TCTCTCTCTCTCTCTCTCTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 349 Combined Motif Reverse Complement Reverse Complement GAGAGYYAGAGASAGAGWGY TTCAMTCATGATTTGGCTCT GAGAGYYAKWSACWSAKKRTTTGGCTCT Direction: Forward Position #: 9 Overlap #: 12 Alignment: GAGAGYYAGAGASAGAGWGY-------- --------TTCAMTCATGATTTGGCTCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 192 Combined Motif Reverse Complement Reverse Complement AGAGCCAAAKYRTSWGTSWRTMKCTCTC ACAGGCTGTCCCAGGATTC AGAGCCAAAKYRWCAGKCTGTCSCWSKMTTC Direction: Forward Position #: 13 Overlap #: 16 Alignment: AGAGCCAAAKYRTSWGTSWRTMKCTCTC--- ------------ACAGGCTGTCCCAGGATTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 294 Combined Motif Reverse Complement Original Motif GAAYRSWGSGACAGRCTGWKKRTTTGGCTCT AGCTGTGAGAAGAGGGCCAC GAAYRSWGSGACARGCTGTGAGWWKRGSKCYAC Direction: Forward Position #: 14 Overlap #: 18 Alignment: GAAYRSWGSGACAGRCTGWKKRTTTGGCTCT-- -------------AGCTGTGAGAAGAGGGCCAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 176 Combined Motif Reverse Complement Reverse Complement GTMGRSCKRWWCTCACAGCKTGTCSCWSKMTTC AACAACASACACTGGGGCCT GTMGRSCKRWWCTCAMMRMBWSWCVCTGGVKYCT Direction: Forward Position #: 15 Overlap #: 19 Alignment: GTMGRSCKRWWCTCACAGCKTGTCSCWSKMTTC- --------------AACAACASACACTGGGGCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 176 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 176 Motif 48 Original Motif Original Motif AGGCCCCAGTGTSTGTTGTT AGCTCCCAGCGTGAGCGACG AGSYCCCAGYGTGWGYKRYK Direction: Forward Position #: 1 Overlap #: 20 Alignment: AGGCCCCAGTGTSTGTTGTT AGCTCCCAGCGTGAGCGACG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 292 Combined Motif Original Motif Reverse Complement AGSYCCCAGYGTGWGYKRYK TTGTCCCACTGGAAGGTCTT AGSYCCCAKTGTSMSABDKGAAGGTCTT Direction: Forward Position #: 9 Overlap #: 12 Alignment: AGSYCCCAGYGTGWGYKRYK-------- --------TTGTCCCACTGGAAGGTCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 139 Combined Motif Original Motif Reverse Complement AGSYCCCAKTGTSMSABDKGAAGGTCTT AWTKKTGGTTKCCAGKGGCT AGSYCCCAKTGTMHBDBTGGWWGSYMKTGGCT Direction: Forward Position #: 13 Overlap #: 16 Alignment: AGSYCCCAKTGTSMSABDKGAAGGTCTT---- ------------AWTKKTGGTTKCCAGKGGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 312 Original Motif Reverse Complement AGSYCCCAKTGTMHBDBTGGWWGSYMKTGGCT CCCMKGGCACCCTCAGTCCT CCCMKGRSVCCCYMRKKYCTBDBTGGWWGSYMKTGGCT Direction: Forward Position #: 7 Overlap #: 14 Alignment: ------AGSYCCCAKTGTMHBDBTGGWWGSYMKTGGCT CCCMKGGCACCCTCAGTCCT------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 254 Combined Motif Reverse Complement Original Motif AGCCARRMSCWWCCABDVAGKRYKRMGGGBSKCYRGGG AAAATCACAAGCATTCCTAT AGCCARRMSCWWCCABDAAARWCASARGSATTCYKRKG Direction: Forward Position #: 18 Overlap #: 20 Alignment: AGCCARRMSCWWCCABDVAGKRYKRMGGGBSKCYRGGG -----------------AAAATCACAAGCATTCCTAT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 177 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 177 Motif 56 Original Motif Original Motif CCCGAAGCTGCRYRCTCGGT CRTGAGCCACYGYRCCYGGC CVYGARSCWSYGYRCYYGGY Direction: Backward Position #: 1 Overlap #: 20 Alignment: CCCGAAGCTGCRYRCTCGGT CRTGAGCCACYGYRCCYGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 52 Combined Motif Original Motif Reverse Complement CVYGARSCWSYGYRCYYGGY GGTGGAGCTGCCTGCCAGTC CVYGARSCGGTGSASCTGSCTGCCAGTC Direction: Forward Position #: 9 Overlap #: 12 Alignment: CVYGARSCWSYGYRCYYGGY-------- --------GGTGGAGCTGCCTGCCAGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 195 Combined Motif Original Motif Original Motif CVYGARSCGGTGSASCTGSCTGCCAGTC TAAAAGACTACAWATTGGGT CVYGARSCGGTGTARMWGVCTRCMARTYGGGT Direction: Forward Position #: 13 Overlap #: 16 Alignment: CVYGARSCGGTGSASCTGSCTGCCAGTC---- ------------TAAAAGACTACAWATTGGGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 99 Combined Motif Original Motif Reverse Complement CVYGARSCGGTGTARMWGVCTRCMARTYGGGT AATGAKATCATGTCYTTTGC CVYGARSCGGTGTAAATGABWDCMWGTCBKKTGC Direction: Forward Position #: 15 Overlap #: 18 Alignment: CVYGARSCGGTGTARMWGVCTRCMARTYGGGT-- --------------AATGAKATCATGTCYTTTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 235 Combined Motif Original Motif Reverse Complement CVYGARSCGGTGTAAATGABWDCMWGTCBKKTGC GCCAATTTCTCCCATTTGGA CVYGARSCGGTGTAARYSAHTTYCTSYCDTTTGSA Direction: Forward Position #: 16 Overlap #: 19 Alignment: CVYGARSCGGTGTAAATGABWDCMWGTCBKKTGC- ---------------GCCAATTTCTCCCATTTGGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 178 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 178 Motif 350 Reverse Complement Reverse Complement ATGTGGAGGTGGAAGACAGT TGCTGGAGGTCCACTCCAGA WKSTGGAGGTSSAMKMCAGW Direction: Backward Position #: 1 Overlap #: 20 Alignment: ATGTGGAGGTGGAAGACAGT TGCTGGAGGTCCACTCCAGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 292 Combined Motif Original Motif Reverse Complement WKSTGGAGGTSSAMKMCAGW TTGTCCCACTGGAAGGTCTT WKSTGGAGKTGBMCBACWGDAAGGTCTT Direction: Forward Position #: 9 Overlap #: 12 Alignment: WKSTGGAGGTSSAMKMCAGW-------- --------TTGTCCCACTGGAAGGTCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 115 Combined Motif Reverse Complement Reverse Complement AAGACCTTHCWGTBGYVCAYCTCCASYW HAGTGGKATTGCTGGATCAT AAGACCTTHCWGTDGTGSRHYTSCWGBATCAT Direction: Forward Position #: 13 Overlap #: 16 Alignment: AAGACCTTHCWGTBGYVCAYCTCCASYW---- ------------HAGTGGKATTGCTGGATCAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 83 Combined Motif Original Motif Reverse Complement AAGACCTTHCWGTDGTGSRHYTSCWGBATCAT GTKTMTATMTACCACATTTT AAGACCTTHCWGTDGTGKAHHTVYASCAYMWTTT Direction: Forward Position #: 15 Overlap #: 18 Alignment: AAGACCTTHCWGTDGTGSRHYTSCWGBATCAT-- --------------GTKTMTATMTACCACATTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 119 Combined Motif Original Motif Reverse Complement AAGACCTTHCWGTDGTGKAHHTVYASCAYMWTTT KKCACCTTGATCTTGGACTT AAGACCTTHCWGTDGTKBACMTHBABCWTVDWYTT Direction: Forward Position #: 16 Overlap #: 19 Alignment: AAGACCTTHCWGTDGTGKAHHTVYASCAYMWTTT- ---------------KKCACCTTGATCTTGGACTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 179 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 179 Motif 292 Reverse Complement Reverse Complement GAATACCTCCTGAAGGACCT TTGTCCCACTGGAAGGTCTT KWRTMCCWCYKGAAGGWCYT Direction: Forward Position #: 1 Overlap #: 20 Alignment: GAATACCTCCTGAAGGACCT TTGTCCCACTGGAAGGTCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 332 Combined Motif Original Motif Reverse Complement KWRTMCCWCYKGAAGGWCYT GTTTAACCATTGAGGGCCAG KWRTMCCWSTTKAASSAYTKAGGGCCAG Direction: Forward Position #: 9 Overlap #: 12 Alignment: KWRTMCCWCYKGAAGGWCYT-------- --------GTTTAACCATTGAGGGCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 225 Combined Motif Original Motif Reverse Complement KWRTMCCWSTTKAASSAYTKAGGGCCAG AAGTTCTKGGKTACATGTGC KWRTMCCWSTTKAAGBWCTKRGGKMCAKGTGC Direction: Forward Position #: 13 Overlap #: 16 Alignment: KWRTMCCWSTTKAASSAYTKAGGGCCAG---- ------------AAGTTCTKGGKTACATGTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 119 Combined Motif Original Motif Reverse Complement KWRTMCCWSTTKAAGBWCTKRGGKMCAKGTGC KKCACCTTGATCTTGGACTT KWRTMCCWSTTKAAGKHMYBDKGDHCWKGKRCTT Direction: Forward Position #: 15 Overlap #: 18 Alignment: KWRTMCCWSTTKAAGBWCTKRGGKMCAKGTGC-- --------------KKCACCTTGATCTTGGACTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 63 Combined Motif Original Motif Original Motif KWRTMCCWSTTKAAGKHMYBDKGDHCWKGKRCTT AGTGAGAACATRYRRTRTTT KWRTMCCWSTTKAAGABTSAGDRCAYDYGKDSTTT Direction: Forward Position #: 16 Overlap #: 19 Alignment: KWRTMCCWSTTKAAGKHMYBDKGDHCWKGKRCTT- ---------------AGTGAGAACATRYRRTRTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 180 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 180 Motif 100 Reverse Complement Original Motif TGCGCATGCGCA GCTGGCCCGCAAGCGCCGCG GCTKGCSCRYRMGCRCCGCG Direction: Forward Position #: 4 Overlap #: 12 Alignment: ---TGCGCATGCGCA----- GCTGGCCCGCAAGCGCCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 306 Combined Motif Reverse Complement Original Motif CGCGGKGCRMKMGSGCYAGC GACATGAGCTGGCGCTTG CGCGGKGCGASAKGRSCWGSCGCTTG Direction: Forward Position #: 9 Overlap #: 12 Alignment: CGCGGKGCRMKMGSGCYAGC------ --------GACATGAGCTGGCGCTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 215 Combined Motif Reverse Complement Original Motif CAAGCGSCWGSMCRTSTCGCRCCGCG HGCTCCTGTGSKCCC CAAGCGSCWGSMSVTCYHGYGCYSCS Direction: Forward Position #: 12 Overlap #: 15 Alignment: CAAGCGSCWGSMCRTSTCGCRCCGCG -----------HGCTCCTGTGSKCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 51 Combined Motif Reverse Complement Original Motif SGSKGCKCDKGAVSRSCWGSCGCTTG GTGGGTGCGCGCA SGSKGCKCDKGRDGGGYDSGCGCWTG Direction: Forward Position #: 12 Overlap #: 13 Alignment: SGSKGCKCDKGAVSRSCWGSCGCTTG -----------GTGGGTGCGCGCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 96 Combined Motif Reverse Complement Reverse Complement CAWGCGCSHMCCCDMCYHGYGCYSCS GGAGCCGGCTCCCTCAGCTT CAWGCGCSHMCBSAGCCBGCKCCCYCAGCTT Direction: Forward Position #: 12 Overlap #: 15 Alignment: CAWGCGCSHMCCCDMCYHGYGCYSCS----- -----------GGAGCCGGCTCCCTCAGCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 181 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 181 Motif 322 Reverse Complement Original Motif ATTTGCATTT AGGGCCTTTGCASWTGC AGGGCMTTTGCAYTTGC Direction: Forward Position #: 6 Overlap #: 10 Alignment: -----ATTTGCATTT-- AGGGCCTTTGCASWTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Original Motif Original Motif AGGGCMTTTGCAYTTGC CATTTCCAWCTGAGGTAC CATTTCCAKSKSAKKTRCAYTTGC Direction: Forward Position #: 8 Overlap #: 11 Alignment: -------AGGGCMTTTGCAYTTGC CATTTCCAWCTGAGGTAC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 233 Combined Motif Reverse Complement Original Motif GCAAMTGKAYYTSRSYTGGAAATG GTTAACTGTAAAACAGCCT GCAAMTGKAYBTTAVCTGKAAAWSAGCCT Direction: Forward Position #: 11 Overlap #: 14 Alignment: GCAAMTGKAYYTSRSYTGGAAATG----- ----------GTTAACTGTAAAACAGCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 214 Combined Motif Original Motif Original Motif GCAAMTGKAYBTTAVCTGKAAAWSAGCCT CTCAGGAATGGAAAACC GCAAMTGKAYBTCWCMKGRAWRDVARMCY Direction: Forward Position #: 13 Overlap #: 17 Alignment: GCAAMTGKAYBTTAVCTGKAAAWSAGCCT ------------CTCAGGAATGGAAAACC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 106 Combined Motif Original Motif Reverse Complement GCAAMTGKAYBTCWCMKGRAWRDVARMCY GGGATTGTAAATACACCAAT GCAAMTGKAYBTBGSATKGWAAADAMACCAAT Direction: Forward Position #: 13 Overlap #: 17 Alignment: GCAAMTGKAYBTCWCMKGRAWRDVARMCY--- ------------GGGATTGTAAATACACCAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 182 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 182 Motif 68 Original Motif Reverse Complement GACCAMGAACCCA GACCTGCAGCCCGCCATG GMMSMCSRMCMYRGACCT Direction: Backward Position #: 1 Overlap #: 13 Alignment: -----GACCAMGAACCCA GACCTGCAGCCCGCCATG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 271 Combined Motif Reverse Complement Reverse Complement AGGTCMMRGYKSGYSYYC KGCAACCTAGATCCCT AGGTCMMDGCAMSCBHBMTCCCT Direction: Forward Position #: 8 Overlap #: 11 Alignment: AGGTCMMRGYKSGYSYYC----- -------KGCAACCTAGATCCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 67 Combined Motif Original Motif Original Motif AGGTCMMDGCAMSCBHBMTCCCT CTGGGCTCCTGAGTCTGGTG AGGTCMMDGCTGGSCTCCTSMSTCTGGTG Direction: Forward Position #: 10 Overlap #: 14 Alignment: AGGTCMMDGCAMSCBHBMTCCCT------ ---------CTGGGCTCCTGAGTCTGGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 60 Combined Motif Original Motif Original Motif AGGTCMMDGCTGGSCTCCTSMSTCTGGTG GATCACGAGGTCAGGAG AGGTCMMDGCTGGVYYMCKAVGTCWGGWG Direction: Forward Position #: 13 Overlap #: 17 Alignment: AGGTCMMDGCTGGSCTCCTSMSTCTGGTG ------------GATCACGAGGTCAGGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 164 Combined Motif Original Motif Reverse Complement AGGTCMMDGCTGGVYYMCKAVGTCWGGWG GCGMGCGGGAACCGGGGCT AGGTCMMDGCTGGMKMGCKGGRWCHGGDGCT Direction: Forward Position #: 13 Overlap #: 17 Alignment: AGGTCMMDGCTGGVYYMCKAVGTCWGGWG-- ------------GCGMGCGGGAACCGGGGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 183 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 183 Motif 100 Reverse Complement Original Motif GGCCMGCAGGGCKGGC GCTGGCCCGCAAGCGCCGCG GCGSKSSCSCRSRRSYGSCG Direction: Backward Position #: 4 Overlap #: 16 Alignment: -GGCCMGCAGGGCKGGC--- GCTGGCCCGCAAGCGCCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 52 Combined Motif Original Motif Reverse Complement GCGSKSSCSCRSRRSYGSCG GGTGGAGCTGCCTGCCAGTC GCGSKSSCGSDGGAGCKGCSTGCCAGTC Direction: Forward Position #: 9 Overlap #: 12 Alignment: GCGSKSSCSCRSRRSYGSCG-------- --------GGTGGAGCTGCCTGCCAGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 155 Combined Motif Reverse Complement Reverse Complement GACTGGCASGCRGCTCCDSCGSSRSCGC GCCKCCCCGTCCGGGAGGGA GACTGGCASGCRGCYBCHCCGBCMGSGMGGGA Direction: Forward Position #: 13 Overlap #: 16 Alignment: GACTGGCASGCRGCTCCDSCGSSRSCGC---- ------------GCCKCCCCGTCCGGGAGGGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Combined Motif Original Motif Reverse Complement GACTGGCASGCRGCYBCHCCGBCMGSGMGGGA GCCACCAMGCCMKGCTAAT GACTGGCASGCRGCBCCACCRHSCSVGRSKRAT Direction: Forward Position #: 15 Overlap #: 18 Alignment: GACTGGCASGCRGCYBCHCCGBCMGSGMGGGA- --------------GCCACCAMGCCMKGCTAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 149 Combined Motif Original Motif Reverse Complement GACTGGCASGCRGCBCCACCRHSCSVGRSKRAT GGGTGCAGGMGGGCTGAGT GACTGGCASGCRGCGSSWSCAGGCSGGCTGART Direction: Forward Position #: 15 Overlap #: 19 Alignment: GACTGGCASGCRGCBCCACCRHSCSVGRSKRAT --------------GGGTGCAGGMGGGCTGAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 184 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 184 Motif 254 Original Motif Reverse Complement ATATTGATGATCCTGACC ATAGGAATGCTTGTGATTTT ATAKKRATGMTYSTGAYYTT Direction: Forward Position #: 1 Overlap #: 18 Alignment: ATATTGATGATCCTGACC-- ATAGGAATGCTTGTGATTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Original Motif Original Motif ATAKKRATGMTYSTGAYYTT GAAAGGGAACTCCCTGACCC ATAKKRATGAWAGKGAHYTYCCTGACCC Direction: Forward Position #: 9 Overlap #: 12 Alignment: ATAKKRATGMTYSTGAYYTT-------- --------GAAAGGGAACTCCCTGACCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 104 Combined Motif Reverse Complement Original Motif GGGTCAGGKAKHTCYCTWTCATKRRTAT CAACATGGATGRARCTGGAG GGGTCAGGKAKHYMHCHTKSATGRADMTGGAG Direction: Forward Position #: 13 Overlap #: 16 Alignment: GGGTCAGGKAKHTCYCTWTCATKRRTAT---- ------------CAACATGGATGRARCTGGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 308 Combined Motif Original Motif Original Motif GGGTCAGGKAKHYMHCHTKSATGRADMTGGAG AAATTAGGCCAATTAATAAC GGGTCAGGKAKHYMAMATTRRKSVAWTTRRWRAC Direction: Forward Position #: 15 Overlap #: 18 Alignment: GGGTCAGGKAKHYMHCHTKSATGRADMTGGAG-- --------------AAATTAGGCCAATTAATAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 137 Combined Motif Original Motif Original Motif GGGTCAGGKAKHYMAMATTRRKSVAWTTRRWRAC AGGTTTGTTACATAGGTAWA GGGTCAGGKAKHYMAARKTHDGTTAHATAGDWAHA Direction: Forward Position #: 16 Overlap #: 19 Alignment: GGGTCAGGKAKHYMAMATTRRKSVAWTTRRWRAC- ---------------AGGTTTGTTACATAGGTAWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 185 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 185 Motif 161 Reverse Complement Reverse Complement CYTCATCTTC VCCDCCTCCKCCTCCTC CTCCYTCMTCYTCVCCD Direction: Backward Position #: 4 Overlap #: 10 Alignment: ----CYTCATCTTC--- VCCDCCTCCKCCTCCTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 26 Original Motif Original Motif CTCCYTCMTCYTCVCCD CTCCTGCCTCAGCCTCCCRA CTCCTGCCTCMSYCHYCYDMVCCD Direction: Forward Position #: 8 Overlap #: 13 Alignment: -------CTCCYTCMTCYTCVCCD CTCCTGCCTCAGCCTCCCRA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 245 Combined Motif Reverse Complement Reverse Complement DGGVYDKGKHGMSYGAGGCAGGAG TTGAGGAGGCAGTCTG DGGVYDKGKHKHGHGRRGSMRGWSTG Direction: Forward Position #: 11 Overlap #: 14 Alignment: DGGVYDKGKHGMSYGAGGCAGGAG-- ----------TTGAGGAGGCAGTCTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 283 Combined Motif Original Motif Reverse Complement DGGVYDKGKHKHGHGRRGSMRGWSTG GGATGGTGAGGGC DGGVYDKGKHKDGAKGGKGMGGGCTG Direction: Forward Position #: 12 Overlap #: 13 Alignment: DGGVYDKGKHKHGHGRRGSMRGWSTG -----------GGATGGTGAGGGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Original Motif Reverse Complement DGGVYDKGKHKDGAKGGKGMGGGCTG GGAGGCKGAGG DGGVYDKGKHKGGAGGSKGAGGGCTG Direction: Forward Position #: 12 Overlap #: 11 Alignment: DGGVYDKGKHKDGAKGGKGMGGGCTG -----------GGAGGCKGAGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 186 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 186 Motif 57 Original Motif Reverse Complement AAATATTT AATAAATATTT AAWWAWTWTTT Direction: Forward Position #: 1 Overlap #: 8 Alignment: AAATATTT--- AATAAATATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 168 Reverse Complement Reverse Complement AAAWAWTWWTT GGTGGGAGAAATACCT GGTGRRADAAWTAYYT Direction: Forward Position #: 5 Overlap #: 11 Alignment: ----AAAWAWTWWTT- GGTGGGAGAAATACCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 329 Reverse Complement Reverse Complement AKKTAWTTHTMMCACC GCTAATATATCCCTCCC GCTAATATDTMYYTCYCMCACC Direction: Forward Position #: 7 Overlap #: 11 Alignment: ------AKKTAWTTHTMMCACC GCTAATATATCCCTCCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 346 Combined Motif Reverse Complement Reverse Complement GGTGRGKGAKKRADATATTAGC GAGCTTTAAGATTT GGTGRGKGAGAGMTWTAWKAKYT Direction: Forward Position #: 10 Overlap #: 13 Alignment: GGTGRGKGAKKRADATATTAGC- ---------GAGCTTTAAGATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 330 Combined Motif Original Motif Original Motif GGTGRGKGAGAGMTWTAWKAKYT AAAACCAGCAAGTTTTTAT GGTGRGKGARARAYHWRYWAGTTTTTAT Direction: Forward Position #: 10 Overlap #: 14 Alignment: GGTGRGKGAGAGMTWTAWKAKYT----- ---------AAAACCAGCAAGTTTTTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 187 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 187 Motif 8 Reverse Complement Original Motif AACTGAGGCTCAGAGA ATCRCTTGAGSYCAGGAGKT GKTWMVYKWGRSBCMRRGAA Direction: Backward Position #: 4 Overlap #: 16 Alignment: -AACTGAGGCTCAGAGA--- ATCRCTTGAGSYCAGGAGKT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Reverse Complement Original Motif TTCKMYGVSKCWYKBRWARC CTCCTGCCTCAGCCTCCCRA TTCKMYGVCTCHYGCVTMASCCTCCCRA Direction: Forward Position #: 9 Overlap #: 12 Alignment: TTCKMYGVSKCWYKBRWARC-------- --------CTCCTGCCTCAGCCTCCCRA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 83 Combined Motif Original Motif Reverse Complement TTCKMYGVCTCHYGCVTMASCCTCCCRA GTKTMTATMTACCACATTTT TTCKMYGVCTCHKKBTHHABMYWCCMVATTTT Direction: Forward Position #: 13 Overlap #: 16 Alignment: TTCKMYGVCTCHYGCVTMASCCTCCCRA---- ------------GTKTMTATMTACCACATTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 109 Combined Motif Original Motif Reverse Complement TTCKMYGVCTCHKKBTHHABMYWCCMVATTTT TCTCTCTCTCTCTCTCTCTC TTCKMYGVCTCHKKTYHCWBYCTCYCBMTYTYTC Direction: Forward Position #: 15 Overlap #: 18 Alignment: TTCKMYGVCTCHKKBTHHABMYWCCMVATTTT-- --------------TCTCTCTCTCTCTCTCTCTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 160 Combined Motif Reverse Complement Original Motif GAMAMAYVGMGAGMBWGHKARYDGAGBCMRRGAA AAATTACCCAGTCTCAGGTA GAMAMAYVGMGAGMBAAATWACBSAGTCTVRGRWA Direction: Forward Position #: 16 Overlap #: 19 Alignment: GAMAMAYVGMGAGMBWGHKARYDGAGBCMRRGAA- ---------------AAATTACCCAGTCTCAGGTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 188 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 188 Motif 105 Reverse Complement Reverse Complement GATGTGTCTGGAG GGAGGTGTGGAGGGAGAGGC GGAGRTGTGKMKGGAGAGGC Direction: Forward Position #: 4 Overlap #: 13 Alignment: ---GATGTGTCTGGAG---- GGAGGTGTGGAGGGAGAGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 104 Combined Motif Reverse Complement Original Motif GCCTCTCCYYRCACAKCTCC CAACATGGATGRARCTGGAG GCCTCTCCCHACAYRGMTSCARCTGGAG Direction: Forward Position #: 9 Overlap #: 12 Alignment: GCCTCTCCYYRCACAKCTCC-------- --------CAACATGGATGRARCTGGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 313 Combined Motif Reverse Complement Reverse Complement CTCCAGKTGSARCKKTGTHGGGAGAGGC MGCTGAGGCAGGAG CTCCAGKTGSARMGSTGWGGSRRGAGGC Direction: Forward Position #: 13 Overlap #: 14 Alignment: CTCCAGKTGSARCKKTGTHGGGAGAGGC ------------MGCTGAGGCAGGAG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Original Motif Reverse Complement CTCCAGKTGSARMGSTGWGGSRRGAGGC TMGGGAGGCTGAGGCAGGAG CTCCAGKTGSARTVBKGAGGCKGRRGSMGGAG Direction: Forward Position #: 13 Overlap #: 16 Alignment: CTCCAGKTGSARMGSTGWGGSRRGAGGC---- ------------TMGGGAGGCTGAGGCAGGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 67 Combined Motif Original Motif Original Motif CTCCAGKTGSARTVBKGAGGCKGRRGSMGGAG CTGGGCTCCTGAGTCTGGTG CTCCAGKTGSARTVCTGRGSYBSTGRGYSKRGTG Direction: Forward Position #: 15 Overlap #: 18 Alignment: CTCCAGKTGSARTVBKGAGGCKGRRGSMGGAG-- --------------CTGGGCTCCTGAGTCTGGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 189 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 189 Motif 349 Reverse Complement Reverse Complement CAATGATAGACTGGAT TTCAMTCATGATTTGGCTCT TTCAMTSATRRWYTGGMTCT Direction: Forward Position #: 3 Overlap #: 16 Alignment: --CAATGATAGACTGGAT-- TTCAMTCATGATTTGGCTCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 310 Combined Motif Original Motif Reverse Complement TTCAMTSATRRWYTGGMTCT GGATTTMKGACTTGCATGGG TTCAMTSAKGATTTSGVWCTTGCATGGG Direction: Forward Position #: 9 Overlap #: 12 Alignment: TTCAMTSATRRWYTGGMTCT-------- --------GGATTTMKGACTTGCATGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 341 Combined Motif Original Motif Reverse Complement TTCAMTSAKGATTTSGVWCTTGCATGGG TGGATGGATGGATGGAT TTCAMTSAKGATTKGRTKSWTGSATGGRT Direction: Forward Position #: 13 Overlap #: 16 Alignment: TTCAMTSAKGATTTSGVWCTTGCATGGG- ------------TGGATGGATGGATGGAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Combined Motif Reverse Complement Reverse Complement AMCCATSCAWSYAKCRAATCRTSAYTGAA MGGGATATAATCTCCTGGTG AMCCATSCAWSYMKSGAWWYAWTMTYSWRGTG Direction: Forward Position #: 13 Overlap #: 17 Alignment: AMCCATSCAWSYAKCRAATCRTSAYTGAA--- ------------MGGGATATAATCTCCTGGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 194 Combined Motif Original Motif Original Motif AMCCATSCAWSYMKSGAWWYAWTMTYSWRGTG CAAGGGTATAYGAGTAGCTG AMCCATSCAWSYMKCRAKRBWATAYBRDDRKSTG Direction: Forward Position #: 15 Overlap #: 18 Alignment: AMCCATSCAWSYMKSGAWWYAWTMTYSWRGTG-- --------------CAAGGGTATAYGAGTAGCTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 190 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 190 Motif 194 Original Motif Original Motif CAAAGGCATAAGAATGAT CAAGGGTATAYGAGTAGCTG TGCAARGGYATAHGARTRRY Direction: Backward Position #: 3 Overlap #: 18 Alignment: CAAAGGCATAAGAATGAT-- CAAGGGTATAYGAGTAGCTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 262 Combined Motif Original Motif Reverse Complement TGCAARGGYATAHGARTRRY GACAGGAGATTAACACTGAG TGCAARGGSAYADGAGWDTMACACTGAG Direction: Forward Position #: 9 Overlap #: 12 Alignment: TGCAARGGYATAHGARTRRY-------- --------GACAGGAGATTAACACTGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 235 Original Motif Original Motif TGCAARGGSAYADGAGWDTMACACTGAG TCCAAATGGGAGAAATTGGC TYSMAADGGGABAARWKDGYMACACTGAG Direction: Forward Position #: 2 Overlap #: 19 Alignment: -TGCAARGGSAYADGAGWDTMACACTGAG TCCAAATGGGAGAAATTGGC--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 21 Combined Motif Reverse Complement Original Motif CTCAGTGTYKCHRWKTTBTCCCDTTYSMA GCCGTTTKTTAAGCCCGTY CTCAGTGTYKCHGCYKTTTBYYAWKCCCRTY Direction: Forward Position #: 13 Overlap #: 17 Alignment: CTCAGTGTYKCHRWKTTBTCCCDTTYSMA-- ------------GCCGTTTKTTAAGCCCGTY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 308 Combined Motif Original Motif Reverse Complement CTCAGTGTYKCHGCYKTTTBYYAWKCCCRTY GTTATTAATTGGCCTAATTT CTCAGTGTYKCHGBTTWTTHMTWDGCCYAWTTT Direction: Forward Position #: 14 Overlap #: 18 Alignment: CTCAGTGTYKCHGCYKTTTBYYAWKCCCRTY-- -------------GTTATTAATTGGCCTAATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 191 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 191 Motif 160 Reverse Complement Reverse Complement GCTGCARTCTCGGCACTTT TACCTGAGACTGGGTAATTT TRCYKSAGWCTSGGYAMTTT Direction: Forward Position #: 2 Overlap #: 19 Alignment: -GCTGCARTCTCGGCACTTT TACCTGAGACTGGGTAATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 171 Combined Motif Original Motif Reverse Complement TRCYKSAGWCTSGGYAMTTT ACTTTGGACTGTGGACTTTT TRCYKSAGACTKKGGACTKTGGACTTTT Direction: Forward Position #: 9 Overlap #: 12 Alignment: TRCYKSAGWCTSGGYAMTTT-------- --------ACTTTGGACTGTGGACTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 70 Combined Motif Reverse Complement Reverse Complement AAAAGTCCARAGTCCRRAGTCTSYMGMA GCAGCAMTATTCACAATAG AAAAGTCCARAGKCMGMAVTMTKCASAATAG Direction: Forward Position #: 13 Overlap #: 16 Alignment: AAAAGTCCARAGTCCRRAGTCTSYMGMA--- ------------GCAGCAMTATTCACAATAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 105 Combined Motif Reverse Complement Original Motif CTATTSTGRAYAVTRCRGRCTKTGGACTTTT GCCTCTCCCTCCACACCTCC CTATTSTGRAYAVKCCTSWCYBTSSACWYYTCC Direction: Forward Position #: 14 Overlap #: 18 Alignment: CTATTSTGRAYAVTRCRGRCTKTGGACTTTT-- -------------GCCTCTCCCTCCACACCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 14 Combined Motif Reverse Complement Original Motif GGAKMWGTSSABMGWSAGGRVTMTKCASAATAG ACCTGGAAAATCGGGTCACT GGAKMWGTSSABMGACVKGGAWAWTCRGRWYAST Direction: Forward Position #: 15 Overlap #: 19 Alignment: GGAKMWGTSSABMGWSAGGRVTMTKCASAATAG- --------------ACCTGGAAAATCGGGTCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 192 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 192 Motif 348 Original Motif Reverse Complement GAATCCTGGGACAGCCTGT CAAASCKGTCATAGGCCAT SAAWCCTGKSAYAGSCYRT Direction: Backward Position #: 1 Overlap #: 19 Alignment: GAATCCTGGGACAGCCTGT CAAASCKGTCATAGGCCAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 64 Reverse Complement Reverse Complement AKMGSCTMTSYCAGGWTTS KCCGGGCCTTAGCTGCCTTC KCCGGGCCWTAGCYKCYKTCAGGWTTS Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------AKMGSCTMTSYCAGGWTTS KCCGGGCCTTAGCTGCCTTC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 280 Combined Motif Original Motif Reverse Complement KCCGGGCCWTAGCYKCYKTCAGGWTTS ACATCMTCTGAAATCTAGG KCCGGGCCWTARCHTCCTYYRRRATYBAGG Direction: Forward Position #: 12 Overlap #: 16 Alignment: KCCGGGCCWTAGCYKCYKTCAGGWTTS--- -----------ACATCMTCTGAAATCTAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Reverse Complement Original Motif CCTVKATKKMMKAGGAHGMTAWGGCCCGGY GAAAGGGAACTCCCTGACCC CCTVKATKKMMKAGRAAGGKAASKCCCKGMCCC Direction: Forward Position #: 14 Overlap #: 17 Alignment: CCTVKATKKMMKAGGAHGMTAWGGCCCGGY--- -------------GAAAGGGAACTCCCTGACCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 65 Combined Motif Original Motif Original Motif CCTVKATKKMMKAGRAAGGKAASKCCCKGMCCC AGAAATCGAGCRCAGCGCCG CCTVKATKKMMKAGARARATMRAGCSCAGCSCCG Direction: Forward Position #: 15 Overlap #: 19 Alignment: CCTVKATKKMMKAGRAAGGKAASKCCCKGMCCC- --------------AGAAATCGAGCRCAGCGCCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 193 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 193 Motif 17 Reverse Complement Reverse Complement GKCTGTACCCCCATTGTAT TGHCCTGCKCCCACTGTCT KKCYSTRCBCCCAYTGTMT Direction: Backward Position #: 1 Overlap #: 19 Alignment: GKCTGTACCCCCATTGTAT TGHCCTGCKCCCACTGTCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 350 Original Motif Original Motif KKCYSTRCBCCCAYTGTMT TCTGGAGTGGACCTCCAGCA TCTGGAGTGGMCCTSCVSCMAYTGTMT Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------KKCYSTRCBCCCAYTGTMT TCTGGAGTGGACCTCCAGCA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 105 Combined Motif Original Motif Original Motif TCTGGAGTGGMCCTSCVSCMAYTGTMT GCCTCTCCCTCCACACCTCC TCTGGAGTGGMSCYYCTCCCWCYRYAYCTCC Direction: Forward Position #: 12 Overlap #: 16 Alignment: TCTGGAGTGGMCCTSCVSCMAYTGTMT---- -----------GCCTCTCCCTCCACACCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Combined Motif Original Motif Reverse Complement TCTGGAGTGGMSCYYCTCCCWCYRYAYCTCC GCCACCAMGCCMKGCTAAT TCTGGAGTGGMSCBCCACCMHBCVCDSCTMMT Direction: Forward Position #: 14 Overlap #: 18 Alignment: TCTGGAGTGGMSCYYCTCCCWCYRYAYCTCC- -------------GCCACCAMGCCMKGCTAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 178 Combined Motif Reverse Complement Original Motif ARRAGSDGVGBHYGGTGGBGSYCCACTCCAGA ACTGTCTTCCACCTCCACAT ARRAGSDGVGBHYGRYKGTSTTCCACYYCMRMAT Direction: Forward Position #: 15 Overlap #: 18 Alignment: ARRAGSDGVGBHYGGTGGBGSYCCACTCCAGA-- --------------ACTGTCTTCCACCTCCACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 194 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 194 Motif 108 Reverse Complement Reverse Complement CAGCTACTCKTATACCCTTG GCGCTCKTCGGGGAGGCTCG SMGCTMSTCGKRKASSCTYG Direction: Backward Position #: 1 Overlap #: 20 Alignment: CAGCTACTCKTATACCCTTG GCGCTCKTCGGGGAGGCTCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 357 Combined Motif Original Motif Original Motif SMGCTMSTCGKRKASSCTYG CAAGTTGACACATAAAATTA SMGCTMSTCRWGTWGACWYRTAAAATTA Direction: Forward Position #: 9 Overlap #: 12 Alignment: SMGCTMSTCGKRKASSCTYG-------- --------CAAGTTGACACATAAAATTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 333 Combined Motif Original Motif Reverse Complement SMGCTMSTCRWGTWGACWYRTAAAATTA AAAGCTGGAGCTATTATCTA SMGCTMSTCRWGWAVGCTSGWRMWATTATCTA Direction: Forward Position #: 13 Overlap #: 16 Alignment: SMGCTMSTCRWGTWGACWYRTAAAATTA---- ------------AAAGCTGGAGCTATTATCTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 115 Combined Motif Original Motif Reverse Complement SMGCTMSTCRWGWAVGCTSGWRMWATTATCTA HAGTGGKATTGCTGGATCAT SMGCTMSTCRWGWADRSTGGDAHTRYTRKMTMAT Direction: Forward Position #: 15 Overlap #: 18 Alignment: SMGCTMSTCRWGWAVGCTSGWRMWATTATCTA-- --------------HAGTGGKATTGCTGGATCAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 196 Combined Motif Reverse Complement Reverse Complement ATYARRMAMKAHTDCCASKDTWCWKGASYAGCYS CAAGCCTSKGCAATGGCAGG ATYARRMAMKAHTDCCAAGCYTCKGSARTRGCHGG Direction: Forward Position #: 16 Overlap #: 19 Alignment: ATYARRMAMKAHTDCCASKDTWCWKGASYAGCYS- ---------------CAAGCCTSKGCAATGGCAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 195 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 195 Motif 202 Reverse Complement Original Motif ACCCAATWTGTAGTCTTTTA ACACATCACAAAGCAGTTTC ACMCAWYAYRWAGYMKTTTM Direction: Backward Position #: 1 Overlap #: 20 Alignment: ACCCAATWTGTAGTCTTTTA ACACATCACAAAGCAGTTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 177 Combined Motif Reverse Complement Reverse Complement RAAARYMCTWMKTMWTGYGT ACCGAGMKMGCAGCTTCGGG RAAARYMCWHMKWVHKVBSWGCTTCGGG Direction: Forward Position #: 9 Overlap #: 12 Alignment: RAAARYMCTWMKTMWTGYGT-------- --------ACCGAGMKMGCAGCTTCGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 254 Combined Motif Original Motif Reverse Complement RAAARYMCWHMKWVHKVBSWGCTTCGGG ATAGGAATGCTTGTGATTTT RAAARYMCWHMKADAKGAATGCTTSKGRTTTT Direction: Forward Position #: 13 Overlap #: 16 Alignment: RAAARYMCWHMKWVHKVBSWGCTTCGGG---- ------------ATAGGAATGCTTGTGATTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 201 Combined Motif Original Motif Reverse Complement RAAARYMCWHMKADAKGAATGCTTSKGRTTTT ACCKTCGCGGTGAGTGTTAC RAAARYMCWHMKADABSDDYGCKKYGRGTKTTAC Direction: Forward Position #: 15 Overlap #: 18 Alignment: RAAARYMCWHMKADAKGAATGCTTSKGRTTTT-- --------------ACCKTCGCGGTGAGTGTTAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 194 Combined Motif Reverse Complement Reverse Complement GTAARACKCMYRGCKDDSBTDTYRDWGYMKTTTM CAGCTACTCKTATACCCTTG GTAARACKCMYRGCKMAGCTAYTVKTRTABYYTHG Direction: Forward Position #: 16 Overlap #: 19 Alignment: GTAARACKCMYRGCKDDSBTDTYRDWGYMKTTTM- ---------------CAGCTACTCKTATACCCTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 196 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 196 Motif 108 Original Motif Reverse Complement CCTGCCATTGCYSAGGCTTG GCGCTCKTCGGGGAGGCTCG SCKSYCRTYGSSGAGGCTYG Direction: Backward Position #: 1 Overlap #: 20 Alignment: CCTGCCATTGCYSAGGCTTG GCGCTCKTCGGGGAGGCTCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 58 Combined Motif Original Motif Original Motif SCKSYCRTYGSSGAGGCTYG ATGGACAYTTRGGTTGHTTC SCKSYCRTWKGGRMRSYTDGGTTGHTTC Direction: Forward Position #: 9 Overlap #: 12 Alignment: SCKSYCRTYGSSGAGGCTYG-------- --------ATGGACAYTTRGGTTGHTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 333 Combined Motif Original Motif Reverse Complement SCKSYCRTWKGGRMRSYTDGGTTGHTTC AAAGCTGGAGCTATTATCTA SCKSYCRTWKGGAAAGCTGGRKYKATTMTCTA Direction: Forward Position #: 13 Overlap #: 16 Alignment: SCKSYCRTWKGGRMRSYTDGGTTGHTTC---- ------------AAAGCTGGAGCTATTATCTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 194 Combined Motif Original Motif Reverse Complement SCKSYCRTWKGGAAAGCTGGRKYKATTMTCTA CAGCTACTCKTATACCCTTG SCKSYCRTWKGGAAMRSYKRMTCKWWTAYCYWTG Direction: Forward Position #: 15 Overlap #: 18 Alignment: SCKSYCRTWKGGAAAGCTGGRKYKATTMTCTA-- --------------CAGCTACTCKTATACCCTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 112 Combined Motif Original Motif Reverse Complement SCKSYCRTWKGGAAMRSYKRMTCKWWTAYCYWTG CTTGCCCAAGGTCACACAGC SCKSYCRTWKGGAAMVKTKVCBMDKDTMHCHHWGC Direction: Forward Position #: 16 Overlap #: 19 Alignment: SCKSYCRTWKGGAAMRSYKRMTCKWWTAYCYWTG- ---------------CTTGCCCAAGGTCACACAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 197 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 197 Motif 125 Reverse Complement Reverse Complement GCTGGCCGGGCG GCGGCTGGCCGGGCG GCTGGCCGGGCGGCG Direction: Backward Position #: 1 Overlap #: 12 Alignment: ---GCTGGCCGGGCG GCGGCTGGCCGGGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 42 Combined Motif Reverse Complement Original Motif CGCCGCCCGGCCAGC CTCTGCCCGGCCGC CGCCGCYCKGCCMGSCCGC Direction: Forward Position #: 6 Overlap #: 10 Alignment: CGCCGCCCGGCCAGC---- -----CTCTGCCCGGCCGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 12 Combined Motif Original Motif Original Motif CGCCGCYCKGCCMGSCCGC AGACCAGCCTGGCCAAC CGCCGCYMGRCCAGCCYGSCCAAC Direction: Forward Position #: 8 Overlap #: 12 Alignment: CGCCGCYCKGCCMGSCCGC----- -------AGACCAGCCTGGCCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 183 Combined Motif Reverse Complement Reverse Complement GTTGGSCKGGCTGGMCYMGCGGCG GGCCMGCAGGGCKGGC GTTGGSCKGGSKSSMSCAGSGSYGGC Direction: Forward Position #: 11 Overlap #: 14 Alignment: GTTGGSCKGGCTGGMCYMGCGGCG-- ----------GGCCMGCAGGGCKGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 82 Combined Motif Original Motif Reverse Complement GTTGGSCKGGSKSSMSCAGSGSYGGC GCTGGCCCKGGTGCTAAGC GTTGGSCKGGSGCTVGCMSGGGTGSYAAGC Direction: Forward Position #: 12 Overlap #: 15 Alignment: GTTGGSCKGGSKSSMSCAGSGSYGGC---- -----------GCTGGCCCKGGTGCTAAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 198 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 198 Motif 78 Reverse Complement Original Motif TCCCTRCCCT CGAGCCCTGCCCCGCGG CGAGYCCYKCCCCKCGG Direction: Forward Position #: 5 Overlap #: 10 Alignment: ----TCCCTRCCCT--- CGAGCCCTGCCCCGCGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Original Motif Original Motif CGAGYCCYKCCCCKCGG GAAAGGGAACTCCCTGACCC GAAAGGGMRMKCCCTGACCCKCGG Direction: Forward Position #: 8 Overlap #: 13 Alignment: -------CGAGYCCYKCCCCKCGG GAAAGGGAACTCCCTGACCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 136 Combined Motif Original Motif Reverse Complement GAAAGGGMRMKCCCTGACCCKCGG CCCCGGGCAGTGAGGG GAAAGGGMRMBCCCKGRCMSTSRGGG Direction: Forward Position #: 11 Overlap #: 14 Alignment: GAAAGGGMRMKCCCTGACCCKCGG-- ----------CCCCGGGCAGTGAGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 221 Combined Motif Reverse Complement Reverse Complement CCCKSASYGMCRGGGBYKYCCCTTTC GTGTCCCCTTCCTCCC CCCKSASYGMCGKGKCCYCYYCYTYCC Direction: Forward Position #: 12 Overlap #: 15 Alignment: CCCKSASYGMCRGGGBYKYCCCTTTC- -----------GTGTCCCCTTCCTCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 46 Combined Motif Reverse Complement Original Motif GGMAMGKKGKGGRCRCGRCMSTSRGGG CCCCWCCCCCA GGMAMGKKGKGSMCVHSCCCCWSRGGG Direction: Forward Position #: 12 Overlap #: 11 Alignment: GGMAMGKKGKGGRCRCGRCMSTSRGGG -----------CCCCWCCCCCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 199 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 199 Motif 49 Original Motif Original Motif ACAGCTGGCACC ACATCTGYMMCC ACAKCTGGCACC Direction: Forward Position #: 1 Overlap #: 12 Alignment: ACAGCTGGCACC ACATCTGYMMCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 1 Reverse Complement Reverse Complement GGTGCCAGYTGT BCVTCTGTCACCCC BCVTCKGTSMCMSYTGT Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----GGTGCCAGYTGT BCVTCTGTCACCCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 96 Reverse Complement Reverse Complement ACAKSYGYSACRGABGB GGAGCCGGCTCCCTCAGCTT GGAGCCGRCWSCCKCVRCDKABGB Direction: Forward Position #: 8 Overlap #: 13 Alignment: -------ACAKSYGYSACRGABGB GGAGCCGGCTCCCTCAGCTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 306 Combined Motif Reverse Complement Reverse Complement BCVTRDGMBGRGGSWGMCGGCTCC CAAGCGCCAGCTCATGTC BCVTRDGMBGMRRGHGCCRGCTCMTGTC Direction: Forward Position #: 11 Overlap #: 14 Alignment: BCVTRDGMBGRGGSWGMCGGCTCC---- ----------CAAGCGCCAGCTCATGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 299 Combined Motif Reverse Complement Original Motif GACAYGAGCKGGCHCKKRCVRCDKABGB CCCTGCTAGAACCTCCAA GACAYGAGCKGGCCCTGCYAGMABMTSCAA Direction: Forward Position #: 13 Overlap #: 16 Alignment: GACAYGAGCKGGCHCKKRCVRCDKABGB-- ------------CCCTGCTAGAACCTCCAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 200 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 200 Motif 95 Original Motif Original Motif ACCCCGTCTGGGA ACCCYGTCTGGGAGGTG GGTGACCCCGTCTGGGA Direction: Backward Position #: 5 Overlap #: 13 Alignment: ACCCCGTCTGGGA---- ACCCYGTCTGGGAGGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Reverse Complement Reverse Complement TCCCAGACGGGGTCACC CGCCCCGTCTGGGAAGTG CGCCCCGTCYSRGAMGKGGTCACC Direction: Forward Position #: 8 Overlap #: 11 Alignment: -------TCCCAGACGGGGTCACC CGCCCCGTCTGGGAAGTG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 155 Combined Motif Reverse Complement Original Motif GGTGACCRCRTCKSMGACGGGGCG TCCCTCCCGGACGGGGYGGC GGTGACCRCRTCCCTSMCGGRSBGGGYGGC Direction: Forward Position #: 11 Overlap #: 14 Alignment: GGTGACCRCRTCKSMGACGGGGCG------ ----------TCCCTCCCGGACGGGGYGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 45 Combined Motif Original Motif Original Motif GGTGACCRCRTCCCTSMCGGRSBGGGYGGC TGCCCAGTCTGGAAAGTG GGTGACCRCRTCCYDCCCRGKCTGGRMRGYG Direction: Forward Position #: 14 Overlap #: 17 Alignment: GGTGACCRCRTCCCTSMCGGRSBGGGYGGC- -------------TGCCCAGTCTGGAAAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 36 Combined Motif Original Motif Reverse Complement GGTGACCRCRTCCYDCCCRGKCTGGRMRGYG CGCCCATCGTCTGGGATGT GGTGACCRCRTCCCGCCCAKBSTSKGVGRTGT Direction: Forward Position #: 14 Overlap #: 18 Alignment: GGTGACCRCRTCCYDCCCRGKCTGGRMRGYG- -------------CGCCCATCGTCTGGGATGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 201 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 201 Motif 294 Original Motif Reverse Complement GTAACACTCACCGCGARGGT GTGGCCCTCTTCTCACAGCT GTRRCMCTCWYCKCRMAGST Direction: Backward Position #: 1 Overlap #: 20 Alignment: GTAACACTCACCGCGARGGT GTGGCCCTCTTCTCACAGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 321 Combined Motif Original Motif Original Motif GTRRCMCTCWYCKCRMAGST AAGCTCGAACTGGGTGGAGC GTRRCMCTMABCTCRAASBKGGTGGAGC Direction: Forward Position #: 9 Overlap #: 12 Alignment: GTRRCMCTCWYCKCRMAGST-------- --------AAGCTCGAACTGGGTGGAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 155 Combined Motif Original Motif Original Motif GTRRCMCTMABCTCRAASBKGGTGGAGC TCCCTCCCGGACGGGGYGGC GTRRCMCTMABCTCSMWCCBGGWSGRGSYGGC Direction: Forward Position #: 13 Overlap #: 16 Alignment: GTRRCMCTMABCTCRAASBKGGTGGAGC---- ------------TCCCTCCCGGACGGGGYGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 76 Combined Motif Original Motif Reverse Complement GTRRCMCTMABCTCSMWCCBGGWSGRGSYGGC CMTAGYACAGTGCCTGGCAC GTRRCMCTMABCTCCMTMSYRSAGKGSCYGGCAC Direction: Forward Position #: 15 Overlap #: 18 Alignment: GTRRCMCTMABCTCSMWCCBGGWSGRGSYGGC-- --------------CMTAGYACAGTGCCTGGCAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 225 Combined Motif Original Motif Reverse Complement GTRRCMCTMABCTCCMTMSYRSAGKGSCYGGCAC AAGTTCTKGGKTACATGTGC GTRRCMCTMABCTCCAWGTTVBDGGGBMYRKSWSC Direction: Forward Position #: 16 Overlap #: 19 Alignment: GTRRCMCTMABCTCCMTMSYRSAGKGSCYGGCAC- ---------------AAGTTCTKGGKTACATGTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 202 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 202 Motif 61 Reverse Complement Original Motif GAAACTGCTTTGTGATGTGT GGATCCACTGGGTGAAGCCA GRAWCYRCTKKGTGAWGYSW Direction: Backward Position #: 1 Overlap #: 20 Alignment: GAAACTGCTTTGTGATGTGT GGATCCACTGGGTGAAGCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 357 Combined Motif Original Motif Original Motif GRAWCYRCTKKGTGAWGYSW CAAGTTGACACATAAAATTA GRAWCYRCYADGTKRASACWTAAAATTA Direction: Forward Position #: 9 Overlap #: 12 Alignment: GRAWCYRCTKKGTGAWGYSW-------- --------CAAGTTGACACATAAAATTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 195 Combined Motif Original Motif Original Motif GRAWCYRCYADGTKRASACWTAAAATTA TAAAAGACTACAWATTGGGT GRAWCYRCYADGTDAAAVMMTAMAAWTWGGGT Direction: Forward Position #: 13 Overlap #: 16 Alignment: GRAWCYRCYADGTKRASACWTAAAATTA---- ------------TAAAAGACTACAWATTGGGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 13 Combined Motif Reverse Complement Reverse Complement ACCCWAWTTRTARYBTTTDACDTMGKKGWTKC GGCAATGCCTCGCCCTGCTT ACCCWAWTTRTARYGGYWAWSBYWSKBSMTGCTT Direction: Forward Position #: 15 Overlap #: 18 Alignment: ACCCWAWTTRTARYBTTTDACDTMGKKGWTKC-- --------------GGCAATGCCTCGCCCTGCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 84 Combined Motif Reverse Complement Original Motif AAGCARSBYSWKBSWTWKCCMMTAMAAWTWGGGT CTGGGTCCCCCAGCAGTGCC AAGCARSBYSWKBSWYTGSSTCYMCMAGYAGKGYC Direction: Forward Position #: 16 Overlap #: 19 Alignment: AAGCARSBYSWKBSWTWKCCMMTAMAAWTWGGGT- ---------------CTGGGTCCCCCAGCAGTGCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 203 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 203 Motif 120 Reverse Complement Reverse Complement GGACGCCATGG GGGASCACATGG GGACSMCATGGG Direction: Backward Position #: 1 Overlap #: 11 Alignment: -GGACGCCATGG GGGASCACATGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 312 Original Motif Reverse Complement GGACSMCATGGG CCCMKGGCACCCTCAGTCCT CCCMKGGMMCCCWYRGKCCT Direction: Forward Position #: 6 Overlap #: 12 Alignment: -----GGACSMCATGGG--- CCCMKGGCACCCTCAGTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 163 Combined Motif Reverse Complement Reverse Complement AGGRCKKWGGGYRCCYRGGG GGAGCCCACGGAGG AGGRCKKWGGRGCCCMVGGRGG Direction: Forward Position #: 9 Overlap #: 12 Alignment: AGGRCKKWGGGYRCCYRGGG-- --------GGAGCCCACGGAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 147 Combined Motif Original Motif Original Motif AGGRCKKWGGRGCCCMVGGRGG CTGGGCACCATTGA AGGRCKKWGSDGGSCACSRTKGA Direction: Forward Position #: 10 Overlap #: 13 Alignment: AGGRCKKWGGRGCCCMVGGRGG- ---------CTGGGCACCATTGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 326 Combined Motif Original Motif Original Motif AGGRCKKWGSDGGSCACSRTKGA GACATGGAGTCAAAGG AGGRCKKWGGASRBSRMGDYDRAGG Direction: Forward Position #: 10 Overlap #: 14 Alignment: AGGRCKKWGSDGGSCACSRTKGA-- ---------GACATGGAGTCAAAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 204 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 204 Motif 253 Original Motif Reverse Complement AGAGYRAGACTCC ACAGAGTGAGACTCT ACAGAGYGAGACTCY Direction: Forward Position #: 3 Overlap #: 13 Alignment: --AGAGYRAGACTCC ACAGAGTGAGACTCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 262 Reverse Complement Reverse Complement KGAGTCTCMCTCTGT GACAGGAGATTAACACTGAG GACAGGDGAKTMWCACTSWGT Direction: Forward Position #: 7 Overlap #: 14 Alignment: ------KGAGTCTCMCTCTGT GACAGGAGATTAACACTGAG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 350 Combined Motif Reverse Complement Reverse Complement ACWSAGTGWYAYTCDCCTGTC TGCTGGAGGTCCACTCCAGA ACWSAGTGTKMTKSASSTSYMCTCCAGA Direction: Forward Position #: 9 Overlap #: 13 Alignment: ACWSAGTGWYAYTCDCCTGTC------- --------TGCTGGAGGTCCACTCCAGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 246 Combined Motif Original Motif Original Motif ACWSAGTGTKMTKSASSTSYMCTCCAGA GCAGCTTCACTCCTGA ACWSAGTGTKMTGCAGCTTCACTCCWGA Direction: Forward Position #: 13 Overlap #: 16 Alignment: ACWSAGTGTKMTKSASSTSYMCTCCAGA ------------GCAGCTTCACTCCTGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 234 Combined Motif Reverse Complement Original Motif TCWGGAGTGAAGCTGCAYYACACTSWGT AAGGAACAAACTCCRGACAC TCWGGAGTGAAGMWGSAWCAMACTCHGKACAC Direction: Forward Position #: 13 Overlap #: 16 Alignment: TCWGGAGTGAAGCTGCAYYACACTSWGT---- ------------AAGGAACAAACTCCRGACAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 205 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 205 Motif 284 Original Motif Original Motif CATCTGGCAGCCCA CATTTGGGAGCCCATTGA TTGACATYTGGSAGCCCA Direction: Backward Position #: 5 Overlap #: 14 Alignment: CATCTGGCAGCCCA---- CATTTGGGAGCCCATTGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 320 Combined Motif Original Motif Reverse Complement TTGACATYTGGSAGCCCA TGGGGCTCCAGATG TTGACATYKGGSMKCCMRATG Direction: Forward Position #: 8 Overlap #: 11 Alignment: TTGACATYTGGSAGCCCA--- -------TGGGGCTCCAGATG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 122 Combined Motif Original Motif Original Motif TTGACATYKGGSMKCCMRATG CCTTGGCCAGCCCAGAAAG TTGACATYBSKBVGCCAGMYSAGAAAG Direction: Forward Position #: 9 Overlap #: 13 Alignment: TTGACATYKGGSMKCCMRATG------ --------CCTTGGCCAGCCCAGAAAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 139 Combined Motif Reverse Complement Original Motif CTTTCTSMRCTGGCVVRSBMATGTCAA AGCCYCTGGYAACCAYYAWT CTTTCTSMRCTRGCCHVBGVMWRYCAMYAWT Direction: Forward Position #: 12 Overlap #: 16 Alignment: CTTTCTSMRCTGGCVVRSBMATGTCAA---- -----------AGCCYCTGGYAACCAYYAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 306 Combined Motif Original Motif Reverse Complement CTTTCTSMRCTRGCCHVBGVMWRYCAMYAWT CAAGCGCCAGCTCATGTC CTTTCTSMRCTRGCMAGHGCCAGCYMATRTY Direction: Forward Position #: 14 Overlap #: 18 Alignment: CTTTCTSMRCTRGCCHVBGVMWRYCAMYAWT -------------CAAGCGCCAGCTCATGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 206 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 206 Motif 215 Reverse Complement Reverse Complement GGRCKCACWGGAGC GGGRSCACAGGAGCD DGGGMGCACWGGAGC Direction: Backward Position #: 2 Overlap #: 14 Alignment: GGRCKCACWGGAGC- GGGRSCACAGGAGCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 67 Reverse Complement Reverse Complement GCTCCWGTGCRCCCH CACCAGACTCAGGAGCCCAG CACCAGRCTCMKGWGCCCMSH Direction: Forward Position #: 7 Overlap #: 14 Alignment: ------GCTCCWGTGCRCCCH CACCAGACTCAGGAGCCCAG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 176 Combined Motif Original Motif Reverse Complement CACCAGRCTCMKGWGCCCMSH AACAACASACACTGGGGCCT CACCAGRCWMCARMRCMCACBGGGGCCT Direction: Forward Position #: 9 Overlap #: 13 Alignment: CACCAGRCTCMKGWGCCCMSH------- --------AACAACASACACTGGGGCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 84 Combined Motif Original Motif Reverse Complement CACCAGRCWMCARMRCMCACBGGGGCCT GGCACTGCTGGGGGACCCAG CACCAGRCWMCAGGCMCYRCTGGGGSMYCCAG Direction: Forward Position #: 13 Overlap #: 16 Alignment: CACCAGRCWMCARMRCMCACBGGGGCCT---- ------------GGCACTGCTGGGGGACCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 321 Combined Motif Reverse Complement Original Motif CTGGKYSCCCCAGMMGYGCCTGRWGMCTGGTG AAGCTCGAACTGGGTGGAGC CTGGKYSCCCCAGMAAGCTCDRAHKVSKKGKRGC Direction: Forward Position #: 15 Overlap #: 18 Alignment: CTGGKYSCCCCAGMMGYGCCTGRWGMCTGGTG-- --------------AAGCTCGAACTGGGTGGAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 207 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 207 Motif 11 Original Motif Reverse Complement GACCTTGA TGGACCTTGAG TGRMCYTKRAG Direction: Forward Position #: 2 Overlap #: 8 Alignment: -GACCTTGA-- TGGACCTTGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 264 Reverse Complement Original Motif CTMRAKGRKCA CCAAGGTCACA CYAARGKCDCA Direction: Forward Position #: 1 Overlap #: 11 Alignment: CTMRAKGRKCA CCAAGGTCACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 362 Original Motif Original Motif CYAARGKCDCA GCTCTGAAGGTCC GCTCYBAAGGTCCCA Direction: Forward Position #: 5 Overlap #: 9 Alignment: ----CYAARGKCDCA GCTCTGAAGGTCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 302 Combined Motif Reverse Complement Original Motif TGGGACCTTBMGAGC GACCCTGAGAGC TGGGASMYYSHGAGMGC Direction: Forward Position #: 6 Overlap #: 10 Alignment: TGGGACCTTBMGAGC-- -----GACCCTGAGAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 328 Combined Motif Original Motif Original Motif TGGGASMYYSHGAGMGC GATACAAAATCAATGTR TGGGASRHTAYRARAKCAATGTR Direction: Forward Position #: 7 Overlap #: 11 Alignment: TGGGASMYYSHGAGMGC------ ------GATACAAAATCAATGTR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 208 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 208 Motif 329 Reverse Complement Reverse Complement ATCGCCCTCAC GCTAATATATCCCTCCC GCTAATATMKCCCTCMC Direction: Forward Position #: 7 Overlap #: 11 Alignment: ------ATCGCCCTCAC GCTAATATATCCCTCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 332 Reverse Complement Original Motif GRGAGGGRRATATTAGC CTGGCCCTCAATGGTTAAAC CTGGCCCKVRAKGGWKAWAYTAGC Direction: Forward Position #: 8 Overlap #: 13 Alignment: -------GRGAGGGRRATATTAGC CTGGCCCTCAATGGTTAAAC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 53 Combined Motif Reverse Complement Reverse Complement GCTAMTWTRWCCRTKVRGGGCCAG CTTGGGTGGTCGATGGGAC GCTAMTWTRWCYWKGGDGGKCSAKGGGAC Direction: Forward Position #: 11 Overlap #: 14 Alignment: GCTAMTWTRWCCRTKVRGGGCCAG----- ----------CTTGGGTGGTCGATGGGAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Reverse Complement Reverse Complement GTCCCYTSGRCCDCCYWMGWKAWAYTAGC GGGTCAGGGAGTTCCCTTTC GTCCCYTSGRCCGSSTHAGGGADWTYMSYTTC Direction: Forward Position #: 13 Overlap #: 17 Alignment: GTCCCYTSGRCCDCCYWMGWKAWAYTAGC--- ------------GGGTCAGGGAGTTCCCTTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 96 Combined Motif Reverse Complement Reverse Complement GAAMSYMAWDTCCCTDASSCGGKCSAKGGGAC GGAGCCGGCTCCCTCAGCTT GAAMSYMAWDTCCCKGAGCCGGYYCMBKSRRCTT Direction: Forward Position #: 15 Overlap #: 18 Alignment: GAAMSYMAWDTCCCTDASSCGGKCSAKGGGAC-- --------------GGAGCCGGCTCCCTCAGCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 209 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 209 Motif 284 Original Motif Original Motif CTGTCAGCCCAT CATTTGGGAGCCCATTGA TGAYTGKSAGCCCATCAT Direction: Backward Position #: 4 Overlap #: 12 Alignment: ---CTGTCAGCCCAT--- CATTTGGGAGCCCATTGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 193 Original Motif Original Motif TGAYTGKSAGCCCATCAT ATACAATGGGGGTACAGRC ATACAATKGRBKKWCAGMCCATCAT Direction: Forward Position #: 8 Overlap #: 12 Alignment: -------TGAYTGKSAGCCCATCAT ATACAATGGGGGTACAGRC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 306 Combined Motif Reverse Complement Original Motif ATGATGGRCTGWYRBKCRATTGTAT GACATGAGCTGGCGCTTG ATGATGGRCTGACATGMGMTKGYRYTTG Direction: Forward Position #: 11 Overlap #: 15 Alignment: ATGATGGRCTGWYRBKCRATTGTAT--- ----------GACATGAGCTGGCGCTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Reverse Complement Reverse Complement CAAKKMCRARCYCATGTCAGMCCATCAT CCTGTAATCCCAGC CAAKKMCRARCYCMTGTMAKCCCAKCAT Direction: Forward Position #: 13 Overlap #: 14 Alignment: CAAKKMCRARCYCATGTCAGMCCATCAT ------------CCTGTAATCCCAGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 122 Combined Motif Original Motif Reverse Complement CAAKKMCRARCYCMTGTMAKCCCAKCAT CTTTCTGGGCTGGCCAAGG CAAKKMCRARCYCYTKYHRGSCYRGCMWAGG Direction: Forward Position #: 13 Overlap #: 16 Alignment: CAAKKMCRARCYCMTGTMAKCCCAKCAT--- ------------CTTTCTGGGCTGGCCAAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 210 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 210 Motif 25 Reverse Complement Original Motif TTACCATCCGAG CATTTCCAWCTGAGGTAC ACTYMMYMTSMGRKCATT Direction: Backward Position #: 3 Overlap #: 12 Alignment: ----TTACCATCCGAG-- CATTTCCAWCTGAGGTAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 82 Reverse Complement Reverse Complement AATGYKCYSARKYRKAGT GCTGGCCCKGGTGCTAAGC GCTGGCCMRKGTGCTVAGVYRKAGT Direction: Forward Position #: 8 Overlap #: 12 Alignment: -------AATGYKCYSARKYRKAGT GCTGGCCCKGGTGCTAAGC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 53 Combined Motif Reverse Complement Original Motif ACTYMMVCTBAGCACRKYGGCCAGC GTCCCATCGACCACCCAAG ACTYMMVCTBRKCMCATCGRCCASCCAAG Direction: Forward Position #: 11 Overlap #: 15 Alignment: ACTYMMVCTBAGCACRKYGGCCAGC---- ----------GTCCCATCGACCACCCAAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 214 Combined Motif Reverse Complement Original Motif CTTGGSTGGKCGATGRGRMVAGVYRKAGT CTCAGGAATGGAAAACC CTTGGSTGGKCGMTSAGGAAWGGHARASY Direction: Forward Position #: 13 Overlap #: 17 Alignment: CTTGGSTGGKCGATGRGRMVAGVYRKAGT ------------CTCAGGAATGGAAAACC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 305 Combined Motif Original Motif Original Motif CTTGGSTGGKCGMTSAGGAAWGGHARASY AATGACCAATTGAGAGC CTTGGSTGGKCGAWBGRSMAAKKRAGAGC Direction: Forward Position #: 13 Overlap #: 17 Alignment: CTTGGSTGGKCGMTSAGGAAWGGHARASY ------------AATGACCAATTGAGAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 211 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 211 Motif 144 Reverse Complement Original Motif CGGCTTCATTCTTGAAGTC CCGCTGCACTGTGGGAGCCC CCGSYKYMMTKYKKGARSYC Direction: Forward Position #: 2 Overlap #: 19 Alignment: -CGGCTTCATTCTTGAAGTC CCGCTGCACTGTGGGAGCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 61 Combined Motif Original Motif Reverse Complement CCGSYKYMMTKYKKGARSYC TGGCTTCACCCAGTGGATCC CCGSYKYMYKGCTTSAMCCMGTGGATCC Direction: Forward Position #: 9 Overlap #: 12 Alignment: CCGSYKYMMTKYKKGARSYC-------- --------TGGCTTCACCCAGTGGATCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 311 Combined Motif Reverse Complement Original Motif GGATCCACYGGRTSAAGCYMYKYKSCGG GGCATCACGGATCCTACCAA GGATCCACYGGRKGMAKCMCBGATCCKRCCAA Direction: Forward Position #: 13 Overlap #: 16 Alignment: GGATCCACYGGRTSAAGCYMYKYKSCGG---- ------------GGCATCACGGATCCTACCAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 65 Combined Motif Reverse Complement Reverse Complement TTGGMRGGATCBGYGRTRCYMCCMGTGGATCC CGGCGCTGMGCTCGATTTCT TTGGMRGGATCBGYSRKVSCHSCVSTSGATYYCT Direction: Forward Position #: 15 Overlap #: 18 Alignment: TTGGMRGGATCBGYGRTRCYMCCMGTGGATCC-- --------------CGGCGCTGMGCTCGATTTCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Reverse Complement Reverse Complement AGMMATCSASVGSHGSVYMSMCBGATCCKRCCAA ARCTCCTGKSCTCAAGKGAT AGMMATCSASVGSHGMRCYCCHGGVHYCWASYRAT Direction: Forward Position #: 16 Overlap #: 19 Alignment: AGMMATCSASVGSHGSVYMSMCBGATCCKRCCAA- ---------------ARCTCCTGKSCTCAAGKGAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 212 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 212 Motif 53 Original Motif Reverse Complement TAGGGTAGTCAAR CTTGGGTGGTCGATGGGAC CTTGGKWGGKYRRTSRRAC Direction: Forward Position #: 6 Overlap #: 13 Alignment: -----TAGGGTAGTCAAR- CTTGGGTGGTCGATGGGAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 194 Original Motif Original Motif CTTGGKWGGKYRRTSRRAC CAAGGGTATAYGAGTAGCTG CAAGGGTAYWTGRGTRGBTGRTSRRAC Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------CTTGGKWGGKYRRTSRRAC CAAGGGTATAYGAGTAGCTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 184 Combined Motif Original Motif Original Motif CAAGGGTAYWTGRGTRGBTGRTSRRAC ATATTGATGATCCTGACC CAAGGGTAYWTRDRTDGVTGATCVTRMCC Direction: Forward Position #: 12 Overlap #: 16 Alignment: CAAGGGTAYWTGRGTRGBTGRTSRRAC-- -----------ATATTGATGATCCTGACC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 308 Combined Motif Reverse Complement Reverse Complement GGRMAVGATCABCDAKDKAWKTACCCTTG GTTATTAATTGGCCTAATTT GGRMAVGATCABSTWATTAAKTRSCCTWRTTT Direction: Forward Position #: 13 Overlap #: 17 Alignment: GGRMAVGATCABCDAKDKAWKTACCCTTG--- ------------GTTATTAATTGGCCTAATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 327 Combined Motif Reverse Complement Original Motif AAAKWAGGSKARTTAATWASVTGATCVTRMCC AGGAGGAAGTCAATTTC AAAKWAGGSKARTTARKARGAWGWYMATKTCC Direction: Forward Position #: 15 Overlap #: 17 Alignment: AAAKWAGGSKARTTAATWASVTGATCVTRMCC --------------AGGAGGAAGTCAATTTC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 213 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 213 Motif 262 Reverse Complement Original Motif TGTATTAGTCMMTT CTCAGTGTTAATCTCCTGTC GTCWGTRTTARTCHCYTCTC Direction: Backward Position #: 4 Overlap #: 14 Alignment: ---TGTATTAGTCMMTT--- CTCAGTGTTAATCTCCTGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 29 Combined Motif Reverse Complement Reverse Complement GAGAMGHGAMTAAMACWGAC MGTCTMKCTCTGTKGCCCAG GAGAMGHGAVTMWMRCTSWSTKGCCCAG Direction: Forward Position #: 9 Overlap #: 12 Alignment: GAGAMGHGAMTAAMACWGAC-------- --------MGTCTMKCTCTGTKGCCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 224 Combined Motif Reverse Complement Reverse Complement CTGGGCRASWSAGKRWYAVTCHCYTCTC CAAAGTCTTAACTCATT CTGGGCRASWSASAAABWCTYAMCTCWYT Direction: Forward Position #: 13 Overlap #: 16 Alignment: CTGGGCRASWSAGKRWYAVTCHCYTCTC- ------------CAAAGTCTTAACTCATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 356 Combined Motif Reverse Complement Reverse Complement AMWGAGYTMAGWBTTTSTSWSTKGCCCAG CAGTCTGTGTCTTTTAATT AMWGAGYTMAGWCWKTCTGTGTYKYYYARTT Direction: Forward Position #: 13 Overlap #: 17 Alignment: AMWGAGYTMAGWBTTTSTSWSTKGCCCAG-- ------------CAGTCTGTGTCTTTTAATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 234 Combined Motif Original Motif Reverse Complement AMWGAGYTMAGWCWKTCTGTGTYKYYYARTT GTGTCKGGAGTTTGTTCCTT AMWGAGYTMAGWCDKKYYKKGWGTTTBWDYYTT Direction: Forward Position #: 14 Overlap #: 18 Alignment: AMWGAGYTMAGWCWKTCTGTGTYKYYYARTT-- -------------GTGTCKGGAGTTTGTTCCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 214 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 214 Motif 7 Reverse Complement Reverse Complement GGTTTTCCATTCCTGAG TTTYTWTTTTTTYTWGAGAC TKKTTTTYYWTTCYTGAGAC Direction: Forward Position #: 2 Overlap #: 17 Alignment: -GGTTTTCCATTCCTGAG-- TTTYTWTTTTTTYTWGAGAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 291 Original Motif Reverse Complement TKKTTTTYYWTTCYTGAGAC TAMGACCTCAGGTCCTCAG TWVGWYYTCHDKTCCTSAGAC Direction: Forward Position #: 2 Overlap #: 18 Alignment: -TKKTTTTYYWTTCYTGAGAC TAMGACCTCAGGTCCTCAG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 262 Combined Motif Reverse Complement Reverse Complement GTCTSAGGAYHHGAKKWCVWA GACAGGAGATTAACACTGAG GTCTSAGGRMCAGRRGAYTAACACTGAG Direction: Forward Position #: 9 Overlap #: 13 Alignment: GTCTSAGGAYHHGAKKWCVWA------- --------GACAGGAGATTAACACTGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Combined Motif Original Motif Reverse Complement GTCTSAGGRMCAGRRGAYTAACACTGAG MGGGATATAATCTCCTGGTG GTCTSAGGRMCAVGGGATWWAMWCTSMKGGTG Direction: Forward Position #: 13 Overlap #: 16 Alignment: GTCTSAGGRMCAGRRGAYTAACACTGAG---- ------------MGGGATATAATCTCCTGGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 332 Combined Motif Original Motif Reverse Complement GTCTSAGGRMCAVGGGATWWAMWCTSMKGGTG GTTTAACCATTGAGGGCCAG GTCTSAGGRMCAVGGKWTAAMMAYTGAGGGYSAG Direction: Forward Position #: 15 Overlap #: 18 Alignment: GTCTSAGGRMCAVGGGATWWAMWCTSMKGGTG-- --------------GTTTAACCATTGAGGGCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 215 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 215 Motif 8 Reverse Complement Original Motif GGGRSCACAGGAGCD ATCRCTTGAGSYCAGGAGKT GAGKTRKSRCYWSAGGMSMG Direction: Backward Position #: 6 Overlap #: 15 Alignment: GGGRSCACAGGAGCD----- ATCRCTTGAGSYCAGGAGKT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 84 Combined Motif Original Motif Reverse Complement GAGKTRKSRCYWSAGGMSMG GGCACTGCTGGGGGACCCAG GAGKTRKSGGCACWGSTGGGGGACCCAG Direction: Forward Position #: 9 Overlap #: 12 Alignment: GAGKTRKSRCYWSAGGMSMG-------- --------GGCACTGCTGGGGGACCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Reverse Complement CTGGGTCCCCCASCWGTGCCSYKARCTC TCKMGCCACTGCACTCCAGC CTGGGTCCCCCAKCDSKSCACTGMACTCCAGC Direction: Forward Position #: 13 Overlap #: 16 Alignment: CTGGGTCCCCCASCWGTGCCSYKARCTC---- ------------TCKMGCCACTGCACTCCAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 115 Combined Motif Original Motif Original Motif CTGGGTCCCCCAKCDSKSCACTGMACTCCAGC ATGATCCAGCAATYCCACTH CTGGGTCCCCCAKCWBGAYMCWGCAMTCCMRCTH Direction: Forward Position #: 15 Overlap #: 18 Alignment: CTGGGTCCCCCAKCDSKSCACTGMACTCCAGC-- --------------ATGATCCAGCAATYCCACTH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 179 Combined Motif Original Motif Original Motif CTGGGTCCCCCAKCWBGAYMCWGCAMTCCMRCTH AGGTCCTTCAGGAGGTATTC CTGGGTCCCCCAKCWAGGTCCTKCAVKMSVDMTHC Direction: Forward Position #: 16 Overlap #: 19 Alignment: CTGGGTCCCCCAKCWBGAYMCWGCAMTCCMRCTH- ---------------AGGTCCTTCAGGAGGTATTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 216 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 216 Motif 35 Original Motif Original Motif CAGAAATCACC CAGAAATCACCCGTCTT CGTCTTCAGAAATCACC Direction: Backward Position #: 7 Overlap #: 11 Alignment: CAGAAATCACC------ CAGAAATCACCCGTCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 261 Original Motif Reverse Complement CGTCTTCAGAAATCACC TAGTGGTGATTTSTGAGAT TAGTGGTSRTYTKYRRRAWTCACC Direction: Forward Position #: 8 Overlap #: 12 Alignment: -------CGTCTTCAGAAATCACC TAGTGGTGATTTSTGAGAT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 336 Combined Motif Original Motif Original Motif TAGTGGTSRTYTKYRRRAWTCACC ATGTAACCAAAYACCACCTG TAGTGGTSRTHTGTAAVMAWMAMCCACCTG Direction: Forward Position #: 11 Overlap #: 14 Alignment: TAGTGGTSRTYTKYRRRAWTCACC------ ----------ATGTAACCAAAYACCACCTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 115 Combined Motif Reverse Complement Original Motif CAGGTGGYTYWTYVTTACAHAKSACCACTA ATGATCCAGCAATYCCACTH CAGGTGGYTYWTYRTKAYMYAKCAMYMCYACTH Direction: Forward Position #: 14 Overlap #: 17 Alignment: CAGGTGGYTYWTYVTTACAHAKSACCACTA--- -------------ATGATCCAGCAATYCCACTH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 279 Combined Motif Reverse Complement Reverse Complement HAGTMGYMYTGYTKYMTYAKMAWMAMCCACCTG MGTGTGATGTCTCCCCC HAGTMGYMYTGYTKCVTSWGAWDTCTCCMCCTG Direction: Forward Position #: 15 Overlap #: 17 Alignment: HAGTMGYMYTGYTKYMTYAKMAWMAMCCACCTG --------------MGTGTGATGTCTCCCCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 217 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 217 Motif 63 Reverse Complement Original Motif KGAGAACAGTAGGG AGTGAGAACATRYRRTRTTT AGTGAGARMAYRSKAKGKTT Direction: Forward Position #: 5 Overlap #: 14 Alignment: ----KGAGAACAGTAGGG-- AGTGAGAACATRYRRTRTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 242 Combined Motif Original Motif Original Motif AGTGAGARMAYRSKAKGKTT AACCCTATTGTGAACTGYG AGTGAGARAACVCTATKGTKAACTGYG Direction: Forward Position #: 9 Overlap #: 12 Alignment: AGTGAGARMAYRSKAKGKTT------- --------AACCCTATTGTGAACTGYG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 85 Combined Motif Original Motif Original Motif AGTGAGARAACVCTATKGTKAACTGYG CTAGACATAAAGGTTCTCCA AGTGAGARAACCYWRWBRTAAASKKTSTCCA Direction: Forward Position #: 12 Overlap #: 16 Alignment: AGTGAGARAACVCTATKGTKAACTGYG---- -----------CTAGACATAAAGGTTCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Reverse Complement AGTGAGARAACCYWRWBRTAAASKKTSTCCA TCKMGCCACTGCACTCCAGC AGTGAGARAACCYTVDCGYMAMTGCWCTCCAGC Direction: Forward Position #: 14 Overlap #: 18 Alignment: AGTGAGARAACCYWRWBRTAAASKKTSTCCA-- -------------TCKMGCCACTGCACTCCAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 105 Combined Motif Reverse Complement Original Motif GCTGGAGWGCAYTRKCGDVAMGGTTKTCTCACT GCCTCTCCCTCCACACCTCC GCTGGAGWGCAYTRGCCTCWCSSTYBWCWCMYYC Direction: Forward Position #: 15 Overlap #: 19 Alignment: GCTGGAGWGCAYTRKCGDVAMGGTTKTCTCACT- --------------GCCTCTCCCTCCACACCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 218 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 218 Motif 327 Reverse Complement Reverse Complement AAGTWACTT GAAATTGACTTCCTCCT CCTCCTAAKTDACTTGA Direction: Backward Position #: 7 Overlap #: 9 Alignment: --AAGTWACTT------ GAAATTGACTTCCTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 231 Reverse Complement Reverse Complement TCAAGTHARTTAGGAGG MGAAGGGACTTGCCTTGT MGAAGGGWCWWGYCWWKTAGGAGG Direction: Forward Position #: 8 Overlap #: 11 Alignment: -------TCAAGTHARTTAGGAGG MGAAGGGACTTGCCTTGT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 316 Combined Motif Original Motif Original Motif MGAAGGGWCWWGYCWWKTAGGAGG CGGAAGTGACGT MGAAGGGWCWCGBMAGTKASGWGG Direction: Forward Position #: 11 Overlap #: 12 Alignment: MGAAGGGWCWWGYCWWKTAGGAGG ----------CGGAAGTGACGT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 213 Combined Motif Original Motif Reverse Complement MGAAGGGWCWCGBMAGTKASGWGG TGTATTAGTCMMTT MGAAGGGWCWTGTAWTWGWCVMKK Direction: Forward Position #: 11 Overlap #: 14 Alignment: MGAAGGGWCWCGBMAGTKASGWGG ----------TGTATTAGTCMMTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 166 Combined Motif Original Motif Reverse Complement MGAAGGGWCWTGTAWTWGWCVMKK CTCRAATGTCCCTT MGAAGGGWCWYKYRAWTGTCCCTT Direction: Forward Position #: 11 Overlap #: 14 Alignment: MGAAGGGWCWTGTAWTWGWCVMKK ----------CTCRAATGTCCCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 219 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 219 Motif 68 Original Motif Reverse Complement CTGCAGCCTC GACCTGCAGCCCGCCATG ATGSYRSMSCSYCGACCT Direction: Backward Position #: 4 Overlap #: 10 Alignment: -----CTGCAGCCTC--- GACCTGCAGCCCGCCATG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 220 Combined Motif Original Motif Original Motif ATGSYRSMSCSYCGACCT TGCACTGCACCCAC ATGSYRSHGCVCYGMMCYCAC Direction: Forward Position #: 8 Overlap #: 11 Alignment: ATGSYRSMSCSYCGACCT--- -------TGCACTGCACCCAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 320 Combined Motif Reverse Complement Reverse Complement GTGMGYYCKGBGCHSMKSCAT TGGGGCTCCAGATG GTGMGYYCTGGGSCBCBVSATG Direction: Forward Position #: 9 Overlap #: 13 Alignment: GTGMGYYCKGBGCHSMKSCAT- --------TGGGGCTCCAGATG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 191 Combined Motif Reverse Complement Reverse Complement CATSBBGVGSCCCAGMMCYCAC GCTGCARTCTCGGCACTTT CATSBBGVGGCYSMRMWCTCRSCACTTT Direction: Forward Position #: 10 Overlap #: 13 Alignment: CATSBBGVGSCCCAGMMCYCAC------ ---------GCTGCARTCTCGGCACTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 313 Combined Motif Reverse Complement Original Motif AAAGTGSKGAGWYMRSMGCCBCBVSATG CTCCTGCCTCAGCY AAAGTGSKGAGWCHCCWGCCTCHGCWTG Direction: Forward Position #: 13 Overlap #: 14 Alignment: AAAGTGSKGAGWYMRSMGCCBCBVSATG ------------CTCCTGCCTCAGCY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 220 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 220 Motif 17 Original Motif Reverse Complement TGCACTGCACCCAC TGHCCTGCKCCCACTGTCT TGCRCYSMMYSYMYTGHCC Direction: Backward Position #: 1 Overlap #: 14 Alignment: -----TGCACTGCACCCAC TGHCCTGCKCCCACTGTCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 289 Combined Motif Original Motif Reverse Complement TGCRCYSMMYSYMYTGHCC TTTGGTGCACCCATCA TGCRCYSWHTGBTGYRCCCATCA Direction: Forward Position #: 8 Overlap #: 12 Alignment: TGCRCYSMMYSYMYTGHCC---- -------TTTGGTGCACCCATCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Reverse Complement Original Motif TGATGGGKMCABCAHWSKGKGCA GCTCACTGCAASCTC TGATGGGKMSCTCAHTGBRAGCWC Direction: Forward Position #: 10 Overlap #: 14 Alignment: TGATGGGKMCABCAHWSKGKGCA- ---------GCTCACTGCAASCTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Reverse Complement TGATGGGKMSCTCAHTGBRAGCWC TCKMGCCACTGCACTCCAGC TGATGGGKMSYHSMBYSHVTGCACTCCAGC Direction: Forward Position #: 11 Overlap #: 14 Alignment: TGATGGGKMSCTCAHTGBRAGCWC------ ----------TCKMGCCACTGCACTCCAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 350 Combined Motif Reverse Complement Reverse Complement GCTGGAGTGCAVHSKBYSDMSYRCCCATCA TGCTGGAGGTCCACTCCAGA GCTGGAGTGCAVHKGCTGGAGBDCCMMTCMAGA Direction: Forward Position #: 14 Overlap #: 17 Alignment: GCTGGAGTGCAVHSKBYSDMSYRCCCATCA--- -------------TGCTGGAGGTCCACTCCAGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 221 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 221 Motif 294 Reverse Complement Reverse Complement GTGTCCCCTTCCTCCC GTGGCCCTCTTCTCACAGCT AGCTGTGKCCCYYTYCTCMC Direction: Backward Position #: 5 Overlap #: 16 Alignment: GTGTCCCCTTCCTCCC---- GTGGCCCTCTTCTCACAGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 178 Combined Motif Original Motif Original Motif AGCTGTGKCCCYYTYCTCMC ACTGTCTTCCACCTCCACAT AGCTGTGKMCYBTYTYYCACCTCCACAT Direction: Forward Position #: 9 Overlap #: 12 Alignment: AGCTGTGKCCCYYTYCTCMC-------- --------ACTGTCTTCCACCTCCACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 214 Combined Motif Original Motif Reverse Complement AGCTGTGKMCYBTYTYYCACCTCCACAT GGTTTTCCATTCCTGAG AGCTGTGKMCYBKBTTTYMCMTYCMYRWG Direction: Forward Position #: 13 Overlap #: 16 Alignment: AGCTGTGKMCYBTYTYYCACCTCCACAT- ------------GGTTTTCCATTCCTGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 105 Combined Motif Original Motif Original Motif AGCTGTGKMCYBKBTTTYMCMTYCMYRWG GCCTCTCCCTCCACACCTCC AGCTGTGKMCYBGCYTYTCCCTCCACACSTCC Direction: Forward Position #: 13 Overlap #: 17 Alignment: AGCTGTGKMCYBKBTTTYMCMTYCMYRWG--- ------------GCCTCTCCCTCCACACCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 14 Combined Motif Original Motif Original Motif AGCTGTGKMCYBGCYTYTCCCTCCACACSTCC ACCTGGAAAATCGGGTCACT AGCTGTGKMCYBGCMYCTSSMWMMWCRVGTCMCT Direction: Forward Position #: 15 Overlap #: 18 Alignment: AGCTGTGKMCYBGCYTYTCCCTCCACACSTCC-- --------------ACCTGGAAAATCGGGTCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 222 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 222 Motif 61 Original Motif Original Motif CGAGATCACGCCA GGATCCACTGGGTGAAGCCA GGATCCACKRGRTSAMGCCA Direction: Forward Position #: 8 Overlap #: 13 Alignment: -------CGAGATCACGCCA GGATCCACTGGGTGAAGCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 99 Combined Motif Reverse Complement Original Motif TGGCYTSAKCKRGTGGATCC GCAAAKGACATGATYTCATT TGGCYTSAGCWARTGRMWYSATYTCATT Direction: Forward Position #: 9 Overlap #: 12 Alignment: TGGCYTSAKCKRGTGGATCC-------- --------GCAAAKGACATGATYTCATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 68 Combined Motif Reverse Complement Reverse Complement AATGAKATSKWYMCAMTWGCTSAMGCCA GACCTGCAGCCCGCCATG AATGAKATSKWYVMMCTGSMKCMCGCCATG Direction: Forward Position #: 13 Overlap #: 16 Alignment: AATGAKATSKWYMCAMTWGCTSAMGCCA-- ------------GACCTGCAGCCCGCCATG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Original Motif AATGAKATSKWYVMMCTGSMKCMCGCCATG GCTGGAGTGCAGTGGCRYGA AATGAKATSKWYVVCYKGVRTSCMGYSRYGYGA Direction: Forward Position #: 14 Overlap #: 17 Alignment: AATGAKATSKWYVMMCTGSMKCMCGCCATG--- -------------GCTGGAGTGCAGTGGCRYGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 35 Combined Motif Original Motif Original Motif AATGAKATSKWYVVCYKGVRTSCMGYSRYGYGA CAGAAATCACCCGTCTT AATGAKATSKWYVVCAGRAATCMMSCGWCKTGA Direction: Forward Position #: 15 Overlap #: 17 Alignment: AATGAKATSKWYVVCYKGVRTSCMGYSRYGYGA --------------CAGAAATCACCCGTCTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 223 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 223 Motif 232 Original Motif Reverse Complement AGCCTCCYGAGTA AAGTCTCCCAATTACAACT AAGYCTCCCRAKTACAACT Direction: Forward Position #: 2 Overlap #: 13 Alignment: -AGCCTCCYGAGTA----- AAGTCTCCCAATTACAACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 67 Reverse Complement Original Motif AGTTGTAYTKGGGAGKCTT CTGGGCTCCTGAGTCTGGTG CTGGGCTCMKKWGTMTKGKGGAGKCTT Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------AGTTGTAYTKGGGAGKCTT CTGGGCTCCTGAGTCTGGTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Combined Motif Reverse Complement Reverse Complement AAGYCTCCRCRAYACWYYRGAGCCCAG TCACKMGGGAAGCGCAAG AAGYCTCCRCRWCACDCBGGARSCSMRAG Direction: Forward Position #: 12 Overlap #: 16 Alignment: AAGYCTCCRCRAYACWYYRGAGCCCAG-- -----------TCACKMGGGAAGCGCAAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 239 Combined Motif Reverse Complement Reverse Complement CTKRSGSKTCCBGDGTGWKGKGGAGKCTT ACAGTTCTGGAGGCT CTKRSGSKTCCBAVRKKTBKKGRRGBYTT Direction: Forward Position #: 13 Overlap #: 15 Alignment: CTKRSGSKTCCBGDGTGWKGKGGAGKCTT ------------ACAGTTCTGGAGGCT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 108 Combined Motif Original Motif Reverse Complement CTKRSGSKTCCBAVRKKTBKKGRRGBYTT GCGCTCKTCGGGGAGGCTCG CTKRSGSKTCCBGMGBTYBTBGGGGAGKYTCG Direction: Forward Position #: 13 Overlap #: 17 Alignment: CTKRSGSKTCCBAVRKKTBKKGRRGBYTT--- ------------GCGCTCKTCGGGGAGGCTCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 224 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 224 Motif 190 Reverse Complement Reverse Complement CAAAGTCTTAACTCATT ATCATTCTTATGCCTTTG MWMAKTCTTAWSYCWTTG Direction: Forward Position #: 1 Overlap #: 17 Alignment: CAAAGTCTTAACTCATT- ATCATTCTTATGCCTTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 129 Original Motif Reverse Complement MWMAKTCTTAWSYCWTTG TGAGKCAATTAAACCTCTT TGAGKCAAWHAWWCYTMTBYCWTTG Direction: Forward Position #: 8 Overlap #: 12 Alignment: -------MWMAKTCTTAWSYCWTTG TGAGKCAATTAAACCTCTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 64 Combined Motif Original Motif Reverse Complement TGAGKCAAWHAWWCYTMTBYCWTTG KCCGGGCCTTAGCTGCCTTC TGAGKCAAWHRHHSBKCYTTMKYTGCCTTC Direction: Forward Position #: 11 Overlap #: 15 Alignment: TGAGKCAAWHAWWCYTMTBYCWTTG----- ----------KCCGGGCCTTAGCTGCCTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 63 Combined Motif Original Motif Reverse Complement TGAGKCAAWHRHHSBKCYTTMKYTGCCTTC AAAMAMMKMATGTTCTCACT TGAGKCAAWHRHHVDDCAHYVVHTGYYYTCACT Direction: Forward Position #: 14 Overlap #: 17 Alignment: TGAGKCAAWHRHHSBKCYTTMKYTGCCTTC--- -------------AAAMAMMKMATGTTCTCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 262 Combined Motif Reverse Complement Original Motif AGTGAMMKCAHBVKHTGDDBDDKHWTTGRCTCA CTCAGTGTTAATCTCCTGTC AGTGAMMKCAHBVKCTSAGTGTTAATYKVCTSWC Direction: Forward Position #: 15 Overlap #: 19 Alignment: AGTGAMMKCAHBVKHTGDDBDDKHWTTGRCTCA- --------------CTCAGTGTTAATCTCCTGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 225 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 225 Motif 83 Reverse Complement Original Motif AAGTTCTKGGKTACATGTGC AAAATGTGGTAYATAYAYAC AARWTSTGGKDTAYATRTRC Direction: Backward Position #: 1 Overlap #: 20 Alignment: AAGTTCTKGGKTACATGTGC AAAATGTGGTAYATAYAYAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 179 Combined Motif Original Motif Reverse Complement AARWTSTGGKDTAYATRTRC GAATACCTCCTGAAGGACCT AARWTSTGGDATACMTVYDSAAGGACCT Direction: Forward Position #: 9 Overlap #: 12 Alignment: AARWTSTGGKDTAYATRTRC-------- --------GAATACCTCCTGAAGGACCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 96 Combined Motif Original Motif Original Motif AARWTSTGGDATACMTVYDSAAGGACCT AAGCTGAGGGAGCCGGCTCC AARWTSTGGDATAMVYHSAGRRRGMCSKCTCC Direction: Forward Position #: 13 Overlap #: 16 Alignment: AARWTSTGGDATACMTVYDSAAGGACCT---- ------------AAGCTGAGGGAGCCGGCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 201 Reverse Complement Original Motif GGAGYSGRCKKKCTSHKVYTATDCCASAWMTT GTAACACTCACCGCGARGGT GKRASHCKVMYBGCKVAGGTTATDCCASAWMTT Direction: Forward Position #: 2 Overlap #: 19 Alignment: -GGAGYSGRCKKKCTSHKVYTATDCCASAWMTT GTAACACTCACCGCGARGGT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 13 Combined Motif Reverse Complement Original Motif AARWTSTGGDATAACCTBYGCVKYVRGHSTMRC AAGCAGGGCGAGGCATTGCC AARWTSTGGDATAAMMGCAGSGCBAGGCVTHRCC Direction: Forward Position #: 15 Overlap #: 19 Alignment: AARWTSTGGDATAACCTBYGCVKYVRGHSTMRC- --------------AAGCAGGGCGAGGCATTGCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 226 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 226 Motif 270 Original Motif Reverse Complement AATAAACATGG CCTMACAATCATGG AAYAAWCATGGCCT Direction: Backward Position #: 1 Overlap #: 11 Alignment: ---AATAAACATGG CCTMACAATCATGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 252 Combined Motif Original Motif Original Motif AAYAAWCATGGCCT AATTAGCYRGG AAYAAAMWTRGCCKGG Direction: Forward Position #: 6 Overlap #: 9 Alignment: AAYAAWCATGGCCT-- -----AATTAGCYRGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 257 Combined Motif Reverse Complement Reverse Complement CCRGGCKAWYTTTMTT TGTCCATGTGTTCTC CCRGGCTRTCYWTVTKTTCTC Direction: Forward Position #: 7 Overlap #: 10 Alignment: CCRGGCKAWYTTTMTT----- ------TGTCCATGTGTTCTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 303 Combined Motif Original Motif Reverse Complement CCRGGCTRTCYWTVTKTTCTC ACCATCTTTAAGAACT CCRGGCTRWCCATCTTTWMKMACT Direction: Forward Position #: 9 Overlap #: 13 Alignment: CCRGGCTRTCYWTVTKTTCTC--- --------ACCATCTTTAAGAACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 129 Combined Motif Reverse Complement Original Motif AGTYRYWAAAGATGGWMAGCCKGG AAGAGGTTTAATTGRCTCA AGTYRYWAAARAKRGDYWKMMTKGRCTCA Direction: Forward Position #: 11 Overlap #: 14 Alignment: AGTYRYWAAAGATGGWMAGCCKGG----- ----------AAGAGGTTTAATTGRCTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 227 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 227 Motif 170 Original Motif Original Motif CCCAAATCTCATSTTGAAT AATCAACCCTGGYRATCAAT MYCAAMYCTSRYSWTSAATA Direction: Backward Position #: 1 Overlap #: 19 Alignment: -CCCAAATCTCATSTTGAAT AATCAACCCTGGYRATCAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 280 Combined Motif Reverse Complement Original Motif TATTSAWSMKSAGMYTTGMY CCTAGATTTCAGARGATGT TATTSAWSCYTAGATTTSABARGATGT Direction: Forward Position #: 9 Overlap #: 12 Alignment: TATTSAWSMKSAGMYTTGMY------- --------CCTAGATTTCAGARGATGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 242 Combined Motif Reverse Complement Original Motif ACATCMTBTSAAATCTAKGSWTSAATA AACCCTATTGTGAACTGYG ACATCMTBTSAAAYCYHDDBDTGAAYWGYG Direction: Forward Position #: 12 Overlap #: 16 Alignment: ACATCMTBTSAAATCTAKGSWTSAATA--- -----------AACCCTATTGTGAACTGYG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 177 Combined Motif Original Motif Original Motif ACATCMTBTSAAAYCYHDDBDTGAAYWGYG CCCGAAGCTGCRYRCTCGGT ACATCMTBTSAAACCYDAAGVTGMAYDSTBGGT Direction: Forward Position #: 14 Overlap #: 17 Alignment: ACATCMTBTSAAAYCYHDDBDTGAAYWGYG--- -------------CCCGAAGCTGCRYRCTCGGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 235 Combined Motif Reverse Complement Original Motif ACCBASDKTYCAVCTTHKGGTTTSABARGATGT TCCAAATGGGAGAAATTGGC ACCBASDKTYCAVCTYCRRRTKKGAGARRWTGKC Direction: Forward Position #: 15 Overlap #: 19 Alignment: ACCBASDKTYCAVCTTHKGGTTTSABARGATGT- --------------TCCAAATGGGAGAAATTGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 228 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 228 Motif 194 Original Motif Reverse Complement AGCTACTTG CAGCTACTCKTATACCCTTG CAGCTACTCKWRYWMCYTKG Direction: Forward Position #: 11 Overlap #: 9 Alignment: ----------AGCTACTTG- CAGCTACTCKTATACCCTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 231 Combined Motif Original Motif Reverse Complement CAGCTACTCKWRYWMCYTKG MGAAGGGACTTGCCTTGT CAGCTACTMGAABDVMCTTGCCTTGT Direction: Forward Position #: 9 Overlap #: 12 Alignment: CAGCTACTCKWRYWMCYTKG------ --------MGAAGGGACTTGCCTTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 52 Combined Motif Original Motif Reverse Complement CAGCTACTMGAABDVMCTTGCCTTGT GGTGGAGCTGCCTGCCAGTC CAGCTACTMGARGTGRMKYKSCYTGYCAGTC Direction: Forward Position #: 12 Overlap #: 15 Alignment: CAGCTACTMGAABDVMCTTGCCTTGT----- -----------GGTGGAGCTGCCTGCCAGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 269 Combined Motif Reverse Complement Reverse Complement GACTGKCAMGSRKYYMCACMTCRAGTAGCTG GCACATGTCGCT GACTGKCAMGSRKBCACAYSTCGMKTAGCTG Direction: Forward Position #: 14 Overlap #: 12 Alignment: GACTGKCAMGSRKYYMCACMTCRAGTAGCTG -------------GCACATGTCGCT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 304 Combined Motif Reverse Complement Original Motif CAGCTAYRCGASMTGTGBYKSCYTGYCAGTC AGTGTTTCCAAMCTGCT CAGCTAYRCGASMWGTGTTTCCAWVCYRSTC Direction: Forward Position #: 14 Overlap #: 17 Alignment: CAGCTAYRCGASMTGTGBYKSCYTGYCAGTC -------------AGTGTTTCCAAMCTGCT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 229 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 229 Motif 247 Original Motif Original Motif GCCTTGCTGCCGC GCCTCACTGCCRC GCCTYRCTGCCRC Direction: Forward Position #: 1 Overlap #: 13 Alignment: GCCTTGCTGCCGC GCCTCACTGCCRC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 149 Original Motif Original Motif GCCTYRCTGCCRC ACTCAGCCCRCCTGCACCC ACTCAGCCYBCCTGCMSCC Direction: Forward Position #: 6 Overlap #: 13 Alignment: -----GCCTYRCTGCCRC- ACTCAGCCCRCCTGCACCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 17 Combined Motif Original Motif Reverse Complement ACTCAGCCYBCCTGCMSCC TGHCCTGCKCCCACTGTCT ACTCAGCYKHCCTGCDCCCACTGTCT Direction: Forward Position #: 8 Overlap #: 12 Alignment: ACTCAGCCYBCCTGCMSCC------- -------TGHCCTGCKCCCACTGTCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 164 Combined Motif Reverse Complement Reverse Complement AGACAGTGGGHGCAGGHYMGCTGAGT GCGMGCGGGAACCGGGGCT AGACAGTGGGHGCRVGCGGGMWSMGKGGCT Direction: Forward Position #: 12 Overlap #: 15 Alignment: AGACAGTGGGHGCAGGHYMGCTGAGT---- -----------GCGMGCGGGAACCGGGGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 64 Combined Motif Reverse Complement Original Motif AGCCRCYSWRCCCGCVKGCDCCCACTGTCT GAAGGCAGCTAAGGCCCGGY AGCCRCYSWRCCCGMAGGCASCYAMKGYCYGGY Direction: Forward Position #: 14 Overlap #: 17 Alignment: AGCCRCYSWRCCCGCVKGCDCCCACTGTCT--- -------------GAAGGCAGCTAAGGCCCGGY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 230 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 230 Motif 254 Reverse Complement Original Motif TTTTCACATGCCTTTCT AAAATCACAAGCATTCCTAT AWWWTCACAWGCMTTYCTAT Direction: Forward Position #: 2 Overlap #: 17 Alignment: -TTTTCACATGCCTTTCT-- AAAATCACAAGCATTCCTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 12 Combined Motif Original Motif Original Motif AWWWTCACAWGCMTTYCTAT AGACCAGCCTGGCCAAC AWWWTCACADRCCWKCCTRKCCAAC Direction: Forward Position #: 9 Overlap #: 12 Alignment: AWWWTCACAWGCMTTYCTAT----- --------AGACCAGCCTGGCCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 290 Combined Motif Original Motif Original Motif AWWWTCACADRCCWKCCTRKCCAAC TGATACCCAGGCAAACAG AWWWTCACADKSMTWCCYAGSCAAMCAG Direction: Forward Position #: 11 Overlap #: 15 Alignment: AWWWTCACADRCCWKCCTRKCCAAC--- ----------TGATACCCAGGCAAACAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 308 Combined Motif Original Motif Original Motif AWWWTCACADKSMTWCCYAGSCAAMCAG AAATTAGGCCAATTAATAAC AWWWTCACADKSAWAYYHRGSCAAHYARTAAC Direction: Forward Position #: 13 Overlap #: 16 Alignment: AWWWTCACADKSMTWCCYAGSCAAMCAG---- ------------AAATTAGGCCAATTAATAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 63 Combined Motif Original Motif Original Motif AWWWTCACADKSAWAYYHRGSCAAHYARTAAC AGTGAGAACATRYRRTRTTT AWWWTCACADKSAWAKTDAGMMMATDMRKWAYTT Direction: Forward Position #: 15 Overlap #: 18 Alignment: AWWWTCACADKSAWAYYHRGSCAAHYARTAAC-- --------------AGTGAGAACATRYRRTRTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 231 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 231 Motif 16 Original Motif Original Motif ACAAGGCAAGTCCCTTCY GAAAGGGAACTCCCTGACCC CCRMAAGGSAASTCCCTKMC Direction: Backward Position #: 3 Overlap #: 18 Alignment: ACAAGGCAAGTCCCTTCY-- GAAAGGGAACTCCCTGACCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 310 Combined Motif Original Motif Reverse Complement CCRMAAGGSAASTCCCTKMC GGATTTMKGACTTGCATGGG CCRMAAGGGRATTYCBKDCYTGCATGGG Direction: Forward Position #: 9 Overlap #: 12 Alignment: CCRMAAGGSAASTCCCTKMC-------- --------GGATTTMKGACTTGCATGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 13 Combined Motif Reverse Complement Reverse Complement CCCATGCAMGDRBGMAATKCCCTTYMGG GGCAATGCCTCGCCCTGCTT CCCATGCAMGDRGGCAATGCCYYKCCSKGCTT Direction: Forward Position #: 13 Overlap #: 16 Alignment: CCCATGCAMGDRBGMAATKCCCTTYMGG---- ------------GGCAATGCCTCGCCCTGCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 14 Combined Motif Reverse Complement Reverse Complement AAGCRSGGRMMGGCATTGCCKDCYTGCATGGG AGTGACCCGATTTTCCAGGT AAGCRSGGRMMGGCAKTGMCYHSWTKYWYSRGGT Direction: Forward Position #: 15 Overlap #: 18 Alignment: AAGCRSGGRMMGGCATTGCCKDCYTGCATGGG-- --------------AGTGACCCGATTTTCCAGGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 63 Combined Motif Original Motif Reverse Complement AAGCRSGGRMMGGCAKTGMCYHSWTKYWYSRGGT AAAMAMMKMATGTTCTCACT AAGCRSGGRMMGGCARWRMMCMBMWTBTTCTSRYT Direction: Forward Position #: 16 Overlap #: 19 Alignment: AAGCRSGGRMMGGCAKTGMCYHSWTKYWYSRGGT- ---------------AAAMAMMKMATGTTCTCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 232 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 232 Motif 336 Reverse Complement Original Motif AAGTCTCCCAATTACAACT ATGTAACCAAAYACCACCTG AWGTMWCCMAATWMCAMCTG Direction: Forward Position #: 1 Overlap #: 19 Alignment: AAGTCTCCCAATTACAACT- ATGTAACCAAAYACCACCTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 178 Combined Motif Reverse Complement Reverse Complement CAGYTGYWATTYGGWYACWT ATGTGGAGGTGGAAGACAGT CAGYTGYWATKTGGAKRYDKAAGACAGT Direction: Forward Position #: 9 Overlap #: 12 Alignment: CAGYTGYWATTYGGWYACWT-------- --------ATGTGGAGGTGGAAGACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 308 Combined Motif Reverse Complement Reverse Complement ACTGTCTTRHKKYTCCARATWMCAMCTG GTTATTAATTGGCCTAATTT ACTGTCTTRHKKSTYMWWAWTWSRCCTRATTT Direction: Forward Position #: 13 Overlap #: 16 Alignment: ACTGTCTTRHKKYTCCARATWMCAMCTG---- ------------GTTATTAATTGGCCTAATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 321 Combined Motif Reverse Complement Original Motif AAATKAGGKSWAWTWWYMASRYDKAAGACAGT AAGCTCGAACTGGGTGGAGC AAATKAGGKSWAWTAABCWCRAABWRGRYRGWGC Direction: Forward Position #: 15 Overlap #: 18 Alignment: AAATKAGGKSWAWTWWYMASRYDKAAGACAGT-- --------------AAGCTCGAACTGGGTGGAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 160 Combined Motif Reverse Complement Original Motif GCWCKKMCKWBTTMGWGBTTAWTWSRCCTRATTT AAATTACCCAGTCTCAGGTA GCWCKKMCKWBTTMGARVTTACYYVGYCTVAKKTA Direction: Forward Position #: 16 Overlap #: 19 Alignment: GCWCKKMCKWBTTMGWGBTTAWTWSRCCTRATTT- ---------------AAATTACCCAGTCTCAGGTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 233 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 233 Motif 137 Original Motif Reverse Complement GTTAACTGTAAAACAGCCT TWTACCTATGTAACAAACCT RTWMMYWKKWAAMMARCCTT Direction: Backward Position #: 1 Overlap #: 19 Alignment: -GTTAACTGTAAAACAGCCT TWTACCTATGTAACAAACCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 55 Combined Motif Reverse Complement Original Motif AAGGKTYYTTWRYWKYYWAM ATGGAATAYTATTCAGCCAT AAGGKTYYWTRRAATWYTAYTCAGCCAT Direction: Forward Position #: 9 Overlap #: 12 Alignment: AAGGKTYYTTWRYWKYYWAM-------- --------ATGGAATAYTATTCAGCCAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 139 Combined Motif Original Motif Original Motif AAGGKTYYWTRRAATWYTAYTCAGCCAT AGCCYCTGGYAACCAYYAWT AAGGKTYYWTRRARYCYYWBKCARCCAYYAWT Direction: Forward Position #: 13 Overlap #: 16 Alignment: AAGGKTYYWTRRAATWYTAYTCAGCCAT---- ------------AGCCYCTGGYAACCAYYAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 179 Combined Motif Reverse Complement Original Motif AWTKMTGGMTGYBWKKGKMTMMAWMMARCCTT AGGTCCTTCAGGAGGTATTC AWTKMTGGMTGYBWAGGTCYYTMAVVAGSYWTTC Direction: Forward Position #: 15 Overlap #: 18 Alignment: AWTKMTGGMTGYBWKKGKMTMMAWMMARCCTT-- --------------AGGTCCTTCAGGAGGTATTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 62 Combined Motif Reverse Complement Reverse Complement GAAWMSCTVVTYAMKGACCTWBKCARCCAYYAWT GTAGACKGGAGCTGTTCCT GAAWMSCTVVTYAMKGWMSAMKGSAGCYRTTMYT Direction: Forward Position #: 16 Overlap #: 19 Alignment: GAAWMSCTVVTYAMKGACCTWBKCARCCAYYAWT ---------------GTAGACKGGAGCTGTTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 234 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 234 Motif 55 Reverse Complement Reverse Complement GTGTCKGGAGTTTGTTCCTT ATGGCTGAATAKTATTCCAT RTGKCTGRAKWKTRTTCCWT Direction: Forward Position #: 1 Overlap #: 20 Alignment: GTGTCKGGAGTTTGTTCCTT ATGGCTGAATAKTATTCCAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 333 Combined Motif Reverse Complement Reverse Complement AWGGAAKARWRTMCAGRCAK AAAGCTGGAGCTATTATCTA AWGGAAKAAAAKCYRGASMTATTATCTA Direction: Forward Position #: 9 Overlap #: 12 Alignment: AWGGAAKARWRTMCAGRCAK-------- --------AAAGCTGGAGCTATTATCTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 336 Combined Motif Reverse Complement Reverse Complement TAGATAATARSTCMMGYTTTTRTTCCWT CAGGTGGTKTTTGGTTACAT TAGATAATARSTCAVGTKKTTWTTSSTTACAT Direction: Forward Position #: 13 Overlap #: 16 Alignment: TAGATAATARSTCMMGYTTTTRTTCCWT---- ------------CAGGTGGTKTTTGGTTACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 309 Combined Motif Original Motif Reverse Complement TAGATAATARSTCAVGTKKTTWTTSSTTACAT MTCCTCCAGACCCCAGAATG TAGATAATARSTCAVKYSTYYAKWCCYYASAWTG Direction: Forward Position #: 15 Overlap #: 18 Alignment: TAGATAATARSTCAVGTKKTTWTTSSTTACAT-- --------------MTCCTCCAGACCCCAGAATG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Reverse Complement Reverse Complement CAWTSTMKGGWYTKKASKRBTGASMTATTATCTA GGGTCAGGGAGTTCCCTTTC CAWTSTMKGGWYTKKRGGTCWGRGAKWTYMYYTWC Direction: Forward Position #: 16 Overlap #: 19 Alignment: CAWTSTMKGGWYTKKASKRBTGASMTATTATCTA- ---------------GGGTCAGGGAGTTCCCTTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 235 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 235 Motif 13 Original Motif Original Motif TCCAAATGGGAGAAATTGGC AAGCAGGGCGAGGCATTGCC WMSMARKGSGAGRMATTGSC Direction: Backward Position #: 1 Overlap #: 20 Alignment: TCCAAATGGGAGAAATTGGC AAGCAGGGCGAGGCATTGCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 155 Combined Motif Reverse Complement Reverse Complement GSCAATRMCTCSCYMTRSYW GCCKCCCCGTCCGGGAGGGA GSCAATRMSYCGCCCYGBCHGGGAGGGA Direction: Forward Position #: 9 Overlap #: 12 Alignment: GSCAATRMCTCSCYMTRSYW-------- --------GCCKCCCCGTCCGGGAGGGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 177 Combined Motif Original Motif Reverse Complement GSCAATRMSYCGCCCYGBCHGGGAGGGA ACCGAGMKMGCAGCTTCGGG GSCAATRMSYCGMCCBRGCBVGSAGSKWCGGG Direction: Forward Position #: 13 Overlap #: 16 Alignment: GSCAATRMSYCGCCCYGBCHGGGAGGGA---- ------------ACCGAGMKMGCAGCTTCGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 83 Combined Motif Reverse Complement Original Motif CCCGWRSCTSCVBGCKVGGRCGMSRMATTGSC AAAATGTGGTAYATAYAYAC CCCGWRSCTSCVBGMWARKGTGVYAHATWBVCAC Direction: Forward Position #: 15 Overlap #: 18 Alignment: CCCGWRSCTSCVBGCKVGGRCGMSRMATTGSC-- --------------AAAATGTGGTAYATAYAYAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 225 Combined Motif Reverse Complement Reverse Complement GTGBBWATDTMVCACRKTWYCBVGSAGSKWCGGG AAGTTCTKGGKTACATGTGC GTGBBWATDTMVCACAWKTTCTKGGRKVBAYGKGC Direction: Forward Position #: 16 Overlap #: 19 Alignment: GTGBBWATDTMVCACRKTWYCBVGSAGSKWCGGG- ---------------AAGTTCTKGGKTACATGTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 236 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 236 Motif 96 Reverse Complement Reverse Complement CGGTACCTCAGAT GGAGCCGGCTCCCTCAGCTT GGAGCCSGSTMCCTCAGMTT Direction: Forward Position #: 7 Overlap #: 13 Alignment: ------CGGTACCTCAGAT- GGAGCCGGCTCCCTCAGCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 320 Combined Motif Original Motif Original Motif GGAGCCSGSTMCCTCAGMTT CATCTGGAGCCCCA GGAGCCSGCWWCYKSAGCYYCA Direction: Forward Position #: 9 Overlap #: 12 Alignment: GGAGCCSGSTMCCTCAGMTT-- --------CATCTGGAGCCCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 291 Combined Motif Original Motif Original Motif GGAGCCSGCWWCYKSAGCYYCA CTGAGGACCTGAGGTCRTA GGAGCCSGCMTSAGGASCTBMRGTCRTA Direction: Forward Position #: 10 Overlap #: 13 Alignment: GGAGCCSGCWWCYKSAGCYYCA------ ---------CTGAGGACCTGAGGTCRTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 187 Combined Motif Reverse Complement Original Motif TAMGACMRBAGSTCCTSARGCSGGCTCC TCTCTGAGCCTCAGTT TAMGACMRBAGSTCYCBRRGCCKSMKYY Direction: Forward Position #: 13 Overlap #: 16 Alignment: TAMGACMRBAGSTCCTSARGCSGGCTCC ------------TCTCTGAGCCTCAGTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 241 Combined Motif Original Motif Reverse Complement TAMGACMRBAGSTCYCBRRGCCKSMKYY TCGTTCACTCAGTGC TAMGACMRBAGSTCBYTCASYCAGYGCY Direction: Forward Position #: 13 Overlap #: 15 Alignment: TAMGACMRBAGSTCYCBRRGCCKSMKYY ------------TCGTTCACTCAGTGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 237 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 237 Motif 274 Original Motif Original Motif TAGCCAAGGRAA CTGGTCAAGGAAA CTRGYCAAGGAAA Direction: Forward Position #: 2 Overlap #: 12 Alignment: -TAGCCAAGGRAA CTGGTCAAGGAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 24 Combined Motif Reverse Complement Original Motif TTTCCTTGKCKAG CKAGTCAAAGAAA TTTCCTWGTCWARGAAA Direction: Forward Position #: 5 Overlap #: 9 Alignment: TTTCCTTGKCKAG---- ----CKAGTCAAAGAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 290 Original Motif Reverse Complement TTTCCTWGTCWARGAAA CTGTTTGCCTGGGTATCA CTGTTTGYYTSSKTRTCAARGAAA Direction: Forward Position #: 8 Overlap #: 11 Alignment: -------TTTCCTWGTCWARGAAA CTGTTTGCCTGGGTATCA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 196 Combined Motif Original Motif Original Motif CTGTTTGYYTSSKTRTCAARGAAA CCTGCCATTGCYSAGGCTTG CTGTTTGYYTCCTKVYMWWGSMAAGGCTTG Direction: Forward Position #: 11 Overlap #: 14 Alignment: CTGTTTGYYTSSKTRTCAARGAAA------ ----------CCTGCCATTGCYSAGGCTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 122 Combined Motif Original Motif Reverse Complement CTGTTTGYYTCCTKVYMWWGSMAAGGCTTG CTTTCTGGGCTGGCCAAGG CTGTTTGYYTCCTBHTHYTGGGCWGGCYWRGG Direction: Forward Position #: 14 Overlap #: 17 Alignment: CTGTTTGYYTCCTKVYMWWGSMAAGGCTTG-- -------------CTTTCTGGGCTGGCCAAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 238 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 238 Motif 353 Original Motif Original Motif ACATGGGCG CACATGGAAGC CACATGGRMGC Direction: Backward Position #: 2 Overlap #: 9 Alignment: -ACATGGGCG- CACATGGAAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 324 Original Motif Reverse Complement CACATGGRMGC TACAGGTGCGT YACAKGKGCGY Direction: Forward Position #: 1 Overlap #: 11 Alignment: CACATGGRMGC TACAGGTGCGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 235 Original Motif Original Motif YACAKGKGCGY TCCAAATGGGAGAAATTGGC TCCAHAYRGGAGMRHTTGGC Direction: Forward Position #: 5 Overlap #: 11 Alignment: ----YACAKGKGCGY----- TCCAAATGGGAGAAATTGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 36 Combined Motif Reverse Complement Reverse Complement GCCAAHMYCTCCKKTHTGGA CGCCCATCGTCTGGGATGT GCCAAHMYCKCCBATCKKSWGGGATGT Direction: Forward Position #: 9 Overlap #: 12 Alignment: GCCAAHMYCTCCKKTHTGGA------- --------CGCCCATCGTCTGGGATGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 93 Combined Motif Original Motif Original Motif GCCAAHMYCKCCBATCKKSWGGGATGT CCATGTGCGG GCCAAHMYCKCCCATSTGCDGGGATGT Direction: Forward Position #: 12 Overlap #: 10 Alignment: GCCAAHMYCKCCBATCKKSWGGGATGT -----------CCATGTGCGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 239 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 239 Motif 309 Original Motif Reverse Complement AGCCTCCAGAACTGT MTCCTCCAGACCCCAGAATG GAATGAKCCTCCAGAMCYSW Direction: Backward Position #: 6 Overlap #: 15 Alignment: AGCCTCCAGAACTGT----- MTCCTCCAGACCCCAGAATG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 307 Combined Motif Reverse Complement Original Motif WSKGYTCTGGAGGYTCATTC AGATGCCAGCCAGAGCTCT WSKGYTCTRGAKGCYMRYYMGAGCTCT Direction: Forward Position #: 9 Overlap #: 12 Alignment: WSKGYTCTGGAGGYTCATTC------- --------AGATGCCAGCCAGAGCTCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 155 Combined Motif Reverse Complement Original Motif AGAGCTCRMMMYKGCRTCKAGAMCYSW TCCCTCCCGGACGGGGYGGC AGAGCTCRMMMTSSCTYCBRGACSBGKYGGC Direction: Forward Position #: 12 Overlap #: 16 Alignment: AGAGCTCRMMMYKGCRTCKAGAMCYSW---- -----------TCCCTCCCGGACGGGGYGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 108 Combined Motif Original Motif Original Motif AGAGCTCRMMMTSSCTYCBRGACSBGKYGGC CGAGCCTCCCCGAYGAGCGC AGAGCTCRMMMTSCSABCCWSMCCGRBBRGCGC Direction: Forward Position #: 14 Overlap #: 18 Alignment: AGAGCTCRMMMTSSCTYCBRGACSBGKYGGC-- -------------CGAGCCTCCCCGAYGAGCGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 105 Combined Motif Original Motif Original Motif AGAGCTCRMMMTSCSABCCWSMCCGRBBRGCGC GCCTCTCCCTCCACACCTCC AGAGCTCRMMMTSCGMCYCTCCCYSCACASCKCC Direction: Forward Position #: 15 Overlap #: 19 Alignment: AGAGCTCRMMMTSCSABCCWSMCCGRBBRGCGC- --------------GCCTCTCCCTCCACACCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 240 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 240 Motif 279 Reverse Complement Original Motif GGGACWGCACAT GGGGGAGACATCACACR GGGGGRGACAKCACAYR Direction: Forward Position #: 5 Overlap #: 12 Alignment: ----GGGACWGCACAT- GGGGGAGACATCACACR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 306 Reverse Complement Reverse Complement MMTGTGYTGTCKCCCCC CAAGCGCCAGCTCATGTC CAAGCGCCAKSTSMTGTCKCCCCC Direction: Forward Position #: 8 Overlap #: 11 Alignment: -------MMTGTGYTGTCKCCCCC CAAGCGCCAGCTCATGTC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 192 Combined Motif Reverse Complement Reverse Complement GGGGGRGACAYSASYTGGCGCTTG ACAGGCTGTCCCAGGATTC GGGGGRGACAACAGBYKGYSCYWGGATTC Direction: Forward Position #: 11 Overlap #: 14 Alignment: GGGGGRGACAYSASYTGGCGCTTG----- ----------ACAGGCTGTCCCAGGATTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 320 Combined Motif Reverse Complement Original Motif GAATCCWMGSMCRKBCTGTTGTCKCCCCC CATCTGGAGCCCCA GAATCCWMGSMCVRTCTGKWGYCYCMCCC Direction: Forward Position #: 13 Overlap #: 14 Alignment: GAATCCWMGSMCRKBCTGTTGTCKCCCCC ------------CATCTGGAGCCCCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 106 Combined Motif Original Motif Reverse Complement GAATCCWMGSMCVRTCTGKWGYCYCMCCC GGGATTGTAAATACACCAAT GAATCCWMGSMCBGKMTKGTRHMTMCMCCAAT Direction: Forward Position #: 13 Overlap #: 17 Alignment: GAATCCWMGSMCVRTCTGKWGYCYCMCCC--- ------------GGGATTGTAAATACACCAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 241 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 241 Motif 144 Original Motif Original Motif GCACTGAGTGAACGA CCGCTGCACTGTGGGAGCCC CCGCTGCACTGWGKGARCSM Direction: Forward Position #: 6 Overlap #: 15 Alignment: -----GCACTGAGTGAACGA CCGCTGCACTGTGGGAGCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 61 Combined Motif Original Motif Reverse Complement CCGCTGCACTGWGKGARCSM TGGCTTCACCCAGTGGATCC CCGCTGCAYKGHKTSASCCAGTGGATCC Direction: Forward Position #: 9 Overlap #: 12 Alignment: CCGCTGCACTGWGKGARCSM-------- --------TGGCTTCACCCAGTGGATCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 48 Combined Motif Original Motif Original Motif CCGCTGCAYKGHKTSASCCAGTGGATCC AGCTCCCAGCGTGAGCGACG CCGCTGCAYKGHDKCWCCCAGYGKRWSCGACG Direction: Forward Position #: 13 Overlap #: 16 Alignment: CCGCTGCAYKGHKTSASCCAGTGGATCC---- ------------AGCTCCCAGCGTGAGCGACG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 312 Combined Motif Original Motif Original Motif CCGCTGCAYKGHDKCWCCCAGYGKRWSCGACG AGGACTGAGGGTGCCYRGGG CCGCTGCAYKGHDKMDSMCWGWGGGTGCSMVGGG Direction: Forward Position #: 15 Overlap #: 18 Alignment: CCGCTGCAYKGHDKCWCCCAGYGKRWSCGACG-- --------------AGGACTGAGGGTGCCYRGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 17 Combined Motif Original Motif Original Motif CCGCTGCAYKGHDKMDSMCWGWGGGTGCSMVGGG AGACAGTGGGYGCAGGHCA CCGCTGCAYKGHDKMRGACAGTGGGTGCAVGDSR Direction: Forward Position #: 16 Overlap #: 19 Alignment: CCGCTGCAYKGHDKMDSMCWGWGGGTGCSMVGGG ---------------AGACAGTGGGYGCAGGHCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 242 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 242 Motif 176 Reverse Complement Reverse Complement CMCAGTTCACAATAGGGTT AACAACASACACTGGGGCCT TMACARYWCACAMTRGGGYY Direction: Backward Position #: 2 Overlap #: 19 Alignment: CMCAGTTCACAATAGGGTT- AACAACASACACTGGGGCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 202 Combined Motif Original Motif Reverse Complement TMACARYWCACAMTRGGGYY GAAACTGCTTTGTGATGTGT TMACARYWSAMACTGSKKTBTGATGTGT Direction: Forward Position #: 9 Overlap #: 12 Alignment: TMACARYWCACAMTRGGGYY-------- --------GAAACTGCTTTGTGATGTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 99 Combined Motif Reverse Complement Original Motif ACACATCABARRSCAGTYTSWMMTGTYA GCAAAKGACATGATYTCATT ACACATCABARRGCARWBKMHAHKRTYWCATT Direction: Forward Position #: 13 Overlap #: 16 Alignment: ACACATCABARRSCAGTYTSWMMTGTYA---- ------------GCAAAKGACATGATYTCATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 48 Combined Motif Original Motif Original Motif ACACATCABARRGCARWBKMHAHKRTYWCATT AGCTCCCAGCGTGAGCGACG ACACATCABARRGCAGMTYCCAGBRTKASMKWCG Direction: Forward Position #: 15 Overlap #: 18 Alignment: ACACATCABARRGCARWBKMHAHKRTYWCATT-- --------------AGCTCCCAGCGTGAGCGACG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 227 Combined Motif Original Motif Reverse Complement ACACATCABARRGCAGMTYCCAGBRTKASMKWCG ATTCAASATGAGATTTGGG ACACATCABARRGCARTTCMMVRTGWGATTTDSG Direction: Forward Position #: 16 Overlap #: 19 Alignment: ACACATCABARRGCAGMTYCCAGBRTKASMKWCG ---------------ATTCAASATGAGATTTGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 243 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 243 Motif 350 Reverse Complement Reverse Complement TTGAGAACCACTG TGCTGGAGGTCCACTCCAGA CAGATKGAGRWCCACTSTGC Direction: Backward Position #: 5 Overlap #: 13 Alignment: ---TTGAGAACCACTG---- TGCTGGAGGTCCACTCCAGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 147 Combined Motif Reverse Complement Original Motif GCASAGTGGWKCTCRATCTG CTGGGCACCATTGA GCASAGTGSTGSKCAMYMTKGA Direction: Forward Position #: 9 Overlap #: 12 Alignment: GCASAGTGGWKCTCRATCTG-- --------CTGGGCACCATTGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 85 Combined Motif Original Motif Reverse Complement GCASAGTGSTGSKCAMYMTKGA TGGAGAACCTTTATGTCTAG GCASAGTGSTGGDSAMCCTTKATGTCTAG Direction: Forward Position #: 10 Overlap #: 13 Alignment: GCASAGTGSTGSKCAMYMTKGA------- ---------TGGAGAACCTTTATGTCTAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 170 Combined Motif Reverse Complement Reverse Complement CTAGACATYAAGGYTSDCCASCACTSTGC ATTGATMKCCAGGGTTGATT CTAGACATYAAGRTTGAYCRCCASKGTKSATT Direction: Forward Position #: 13 Overlap #: 17 Alignment: CTAGACATYAAGGYTSDCCASCACTSTGC--- ------------ATTGATMKCCAGGGTTGATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 43 Combined Motif Reverse Complement Reverse Complement AATSRACRSTGGKGMTCAAKCTTKATGTCTAG AGGAGRCMCTCTGCCTGGC AATSRACRSTGGKGAKSARDCYYTMTGYCTRGC Direction: Forward Position #: 15 Overlap #: 18 Alignment: AATSRACRSTGGKGMTCAAKCTTKATGTCTAG- --------------AGGAGRCMCTCTGCCTGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 244 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 244 Motif 168 Reverse Complement Reverse Complement TGGGTAWATAC GGTGGGAGAAATACCT CTKGGRKAAATACGGT Direction: Backward Position #: 3 Overlap #: 11 Alignment: ---TGGGTAWATAC-- GGTGGGAGAAATACCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 319 Combined Motif Reverse Complement Reverse Complement ACCGTATTTRMCCRAG TTGTTAAAAACTA ACCGTATTKDTMMAARCTA Direction: Forward Position #: 7 Overlap #: 10 Alignment: ACCGTATTTRMCCRAG--- ------TTGTTAAAAACTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 106 Reverse Complement Reverse Complement TAGKTTRRADRAATACGGT GGGATTGTAAATACACCAAT GGGATTGTWARTWYASCAAWATACGGT Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------TAGKTTRRADRAATACGGT GGGATTGTAAATACACCAAT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 224 Combined Motif Original Motif Original Motif GGGATTGTWARTWYASCAAWATACGGT AATGAGTTAAGACTTTG GGGATTGTWARWATRASWWAAKACKKTG Direction: Forward Position #: 12 Overlap #: 16 Alignment: GGGATTGTWARTWYASCAAWATACGGT- -----------AATGAGTTAAGACTTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 83 Combined Motif Original Motif Reverse Complement GGGATTGTWARWATRASWWAAKACKKTG GTKTMTATMTACCACATTTT GGGATTGTWARWRTGWVTAWATACYAYRTTTT Direction: Forward Position #: 13 Overlap #: 16 Alignment: GGGATTGTWARWATRASWWAAKACKKTG---- ------------GTKTMTATMTACCACATTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 245 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 245 Motif 178 Reverse Complement Reverse Complement TTGAGGAGGCAGTCTG ATGTGGAGGTGGAAGACAGT TTKGAGGWGGMAGWCWGATG Direction: Backward Position #: 2 Overlap #: 16 Alignment: ---TTGAGGAGGCAGTCTG- ATGTGGAGGTGGAAGACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 96 Combined Motif Reverse Complement Original Motif CATCWGWCTYCCWCCTCRAA AAGCTGAGGGAGCCGGCTCC CATCWGWCWHSCTSMKSGARCCGGCTCC Direction: Forward Position #: 9 Overlap #: 12 Alignment: CATCWGWCTYCCWCCTCRAA-------- --------AAGCTGAGGGAGCCGGCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 356 Combined Motif Reverse Complement Reverse Complement GGAGCCGGMTCSYYSAGSHWGWCWGATG CAGTCTGTGTCTTTTAATT GGAGCCGGMTCSCWGWSTDTGTCTKWTRATT Direction: Forward Position #: 13 Overlap #: 16 Alignment: GGAGCCGGMTCSYYSAGSHWGWCWGATG--- ------------CAGTCTGTGTCTTTTAATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 149 Combined Motif Reverse Complement Original Motif AATKAWRAGACAHASWCWGSGARCCGGCTCC ACTCAGCCCRCCTGCACCC AATKAWRAGACAHACTCAGCSMRCCKGCWCCC Direction: Forward Position #: 14 Overlap #: 18 Alignment: AATKAWRAGACAHASWCWGSGARCCGGCTCC- -------------ACTCAGCCCRCCTGCACCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 202 Combined Motif Reverse Complement Reverse Complement GGGWGCRGGMYSGCTGAGTDTGTCTKWTRATT GAAACTGCTTTGTGATGTGT GGGWGCRGGMYSGCKRARYTKSTYTGTKAWKTGT Direction: Forward Position #: 15 Overlap #: 18 Alignment: GGGWGCRGGMYSGCTGAGTDTGTCTKWTRATT-- --------------GAAACTGCTTTGTGATGTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 246 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 246 Motif 350 Reverse Complement Original Motif TCAGGAGTGAAGCTGC TCTGGAGTGGACCTCCAGCA TCWGGAGTGRASCTSCAGCA Direction: Forward Position #: 1 Overlap #: 16 Alignment: TCAGGAGTGAAGCTGC---- TCTGGAGTGGACCTCCAGCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Reverse Complement TGCTGSAGSTKCACTCCWGA TCKMGCCACTGCACTCCAGC TGCTGSAGBYKCRCYMCTGMACTCCAGC Direction: Forward Position #: 9 Overlap #: 12 Alignment: TGCTGSAGSTKCACTCCWGA-------- --------TCKMGCCACTGCACTCCAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Combined Motif Reverse Complement Reverse Complement GCTGGAGTYCAGYMGKGYMVCTSCAGCA TCACKMGGGAAGCGCAAG GCTGGAGTYCAGTCRBGCVGSWASMGCAAG Direction: Forward Position #: 13 Overlap #: 16 Alignment: GCTGGAGTYCAGYMGKGYMVCTSCAGCA-- ------------TCACKMGGGAAGCGCAAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 214 Combined Motif Original Motif Original Motif GCTGGAGTYCAGTCRBGCVGSWASMGCAAG CTCAGGAATGGAAAACC GCTGGAGTYCAGTCDCRVGARTGGARMAMS Direction: Forward Position #: 14 Overlap #: 17 Alignment: GCTGGAGTYCAGTCRBGCVGSWASMGCAAG -------------CTCAGGAATGGAAAACC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 64 Combined Motif Reverse Complement Original Motif SYTYKTCCAKTCVKGDGACTGMACTCCAGC GAAGGCAGCTAAGGCCCGGY SYTYKTCCAKTCVGRAGRCWGCWMWSSMSCGGY Direction: Forward Position #: 14 Overlap #: 17 Alignment: SYTYKTCCAKTCVKGDGACTGMACTCCAGC--- -------------GAAGGCAGCTAAGGCCCGGY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 247 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 247 Motif 136 Reverse Complement Reverse Complement GKGGCAGTGAGGC CCCCGGGCAGTGAGGG SKGGCAGTGAGGSCCC Direction: Backward Position #: 1 Overlap #: 13 Alignment: ---GKGGCAGTGAGGC CCCCGGGCAGTGAGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 229 Combined Motif Reverse Complement Original Motif GGGSCCTCACTGCCYS GCCTTGCTGCCGC GGGSCCKCMYTGCYSCCGC Direction: Forward Position #: 7 Overlap #: 10 Alignment: GGGSCCTCACTGCCYS--- ------GCCTTGCTGCCGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 311 Original Motif Original Motif GGGSCCKCMYTGCYSCCGC GGCATCACGGATCCTACCAA GGCATCACGGRBCCTMCCWRCYSCCGC Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------GGGSCCKCMYTGCYSCCGC GGCATCACGGATCCTACCAA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 111 Combined Motif Reverse Complement Reverse Complement GCGGSMGKWGGYAGGVKCCGTGATGCC KGGGCDGAGGGGCTCCT GCGGSMGKWGGTRGGCKSMGKGRYKCCT Direction: Forward Position #: 12 Overlap #: 16 Alignment: GCGGSMGKWGGYAGGVKCCGTGATGCC- -----------KGGGCDGAGGGGCTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 149 Combined Motif Original Motif Reverse Complement GCGGSMGKWGGTRGGCKSMGKGRYKCCT GGGTGCAGGMGGGCTGAGT GCGGSMGKWGGTGGGYGCAGGSGBGCYKAGT Direction: Forward Position #: 13 Overlap #: 16 Alignment: GCGGSMGKWGGTRGGCKSMGKGRYKCCT--- ------------GGGTGCAGGMGGGCTGAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 248 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 248 Motif 289 Original Motif Original Motif TAATGGGTACAAA TGATGGGTGCACCAAA AAATRATGGGTRCAVM Direction: Backward Position #: 4 Overlap #: 13 Alignment: TAATGGGTACAAA--- TGATGGGTGCACCAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 356 Original Motif Original Motif AAATRATGGGTRCAVM AATTAAAAGACACAGACTG AATTAAAARWVAYRGRYWSAVM Direction: Forward Position #: 7 Overlap #: 13 Alignment: ------AAATRATGGGTRCAVM AATTAAAAGACACAGACTG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 333 Combined Motif Reverse Complement Original Motif YBTSWMKCKMTVWKTTTTAATT TAGATAATAGCTCCAGCTTT YBTSWMKCKWWGATWWTWRMTYCAGCTTT Direction: Forward Position #: 10 Overlap #: 13 Alignment: YBTSWMKCKMTVWKTTTTAATT------- ---------TAGATAATAGCTCCAGCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 225 Combined Motif Reverse Complement Reverse Complement AAAGCTGMARMWAWWATCWWRGRYWSAVM AAGTTCTKGGKTACATGTGC AAAGCTGMARMWAADWTCTDGGRTACAHVTGC Direction: Forward Position #: 13 Overlap #: 17 Alignment: AAAGCTGMARMWAWWATCWWRGRYWSAVM--- ------------AAGTTCTKGGKTACATGTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 193 Combined Motif Reverse Complement Reverse Complement GCAVHTGTAMCCDAGAWHTTWRMTYCAGCTTT GKCTGTACCCCCATTGTAT GCAVHTGTAMCCDAGWHTKTAVCYCCAKYKTWT Direction: Forward Position #: 15 Overlap #: 18 Alignment: GCAVHTGTAMCCDAGAWHTTWRMTYCAGCTTT- --------------GKCTGTACCCCCATTGTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 249 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 249 Motif 294 Original Motif Original Motif TGTGAAGAGACCACCAA AGCTGTGAGAAGAGGGCCAC AGCTGTGARRAGASSRCCAM Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---TGTGAAGAGACCACCAA AGCTGTGAGAAGAGGGCCAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 279 Combined Motif Reverse Complement Reverse Complement YTGGKSSTCTKKTCACAGCT MGTGTGATGTCTCCCCC YTGGKSSTCKTGTSAYRKCTCCCCC Direction: Forward Position #: 9 Overlap #: 12 Alignment: YTGGKSSTCTKKTCACAGCT----- --------MGTGTGATGTCTCCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 83 Combined Motif Original Motif Reverse Complement YTGGKSSTCKTGTSAYRKCTCCCCC GTKTMTATMTACCACATTTT YTGGKSSTCKKKTBAYATCTMCCMCATTTT Direction: Forward Position #: 11 Overlap #: 15 Alignment: YTGGKSSTCKTGTSAYRKCTCCCCC----- ----------GTKTMTATMTACCACATTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 52 Combined Motif Reverse Complement Original Motif AAAATGYGGRAGATMTVARYRGASSRCCAM GACTGGCAGGCAGCTCCACC AAAATGYGGRAGAKAYDRGCAGRCAGCYMCACC Direction: Forward Position #: 14 Overlap #: 17 Alignment: AAAATGYGGRAGATMTVARYRGASSRCCAM--- -------------GACTGGCAGGCAGCTCCACC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 350 Combined Motif Original Motif Original Motif AAAATGYGGRAGAKAYDRGCAGRCAGCYMCACC TCTGGAGTGGACCTCCAGCA AAAATGYGGRAGAKWCTGGMRKGSASCTCCASCA Direction: Forward Position #: 15 Overlap #: 19 Alignment: AAAATGYGGRAGAKAYDRGCAGRCAGCYMCACC- --------------TCTGGAGTGGACCTCCAGCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 250 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 250 Motif 107 Reverse Complement Reverse Complement GGAGCGGTGG GGMGCKGTGGCTC GGAGCGGTGGCTC Direction: Forward Position #: 1 Overlap #: 10 Alignment: GGAGCGGTGG--- GGMGCKGTGGCTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 56 Reverse Complement Reverse Complement GAGCCACCGCTCC GCCKGGMKCMGTGGCTCAKG GCCKGGAGCCRYSGCTCMKG Direction: Forward Position #: 6 Overlap #: 13 Alignment: -----GAGCCACCGCTCC-- GCCKGGMKCMGTGGCTCAKG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 105 Combined Motif Reverse Complement Original Motif CRYGAGCSKKGGCTCCYGGC GCCTCTCCCTCCACACCTCC CRYGAGCSGBSKCTCCCKSCACACCTCC Direction: Forward Position #: 9 Overlap #: 12 Alignment: CRYGAGCSKKGGCTCCYGGC-------- --------GCCTCTCCCTCCACACCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Combined Motif Original Motif Reverse Complement CRYGAGCSGBSKCTCCCKSCACACCTCC GCCACCAMGCCMKGCTAAT CRYGAGCSGBSKSYCMCBMCRCMCSKCYAAT Direction: Forward Position #: 13 Overlap #: 16 Alignment: CRYGAGCSGBSKCTCCCKSCACACCTCC--- ------------GCCACCAMGCCMKGCTAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 331 Combined Motif Original Motif Original Motif CRYGAGCSGBSKSYCMCBMCRCMCSKCYAAT CCACCACAGCTCAAGGAGGC CRYGAGCSGBSKSCCACCACASCYCDMSRAKGC Direction: Forward Position #: 14 Overlap #: 18 Alignment: CRYGAGCSGBSKSYCMCBMCRCMCSKCYAAT-- -------------CCACCACAGCTCAAGGAGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 251 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 251 Motif 307 Reverse Complement Original Motif CGAGACCAGCCTG AGATGCCAGCCAGAGCTCT MGAKRCCAGCCWGAGCTCT Direction: Forward Position #: 1 Overlap #: 13 Alignment: CGAGACCAGCCTG------ AGATGCCAGCCAGAGCTCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 192 Combined Motif Original Motif Reverse Complement MGAKRCCAGCCWGAGCTCT ACAGGCTGTCCCAGGATTC MGAKRCCASMSKSWGYYCYAGGATTC Direction: Forward Position #: 8 Overlap #: 12 Alignment: MGAKRCCAGCCWGAGCTCT------- -------ACAGGCTGTCCCAGGATTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 78 Combined Motif Reverse Complement Original Motif GAATCCTKGKMCWSYSYSTGGKYTCY CGAGCCCTGCCCCGCGG GAATCCTKGKMCDABCCCTGSBCYSYGG Direction: Forward Position #: 12 Overlap #: 15 Alignment: GAATCCTKGKMCWSYSYSTGGKYTCY-- -----------CGAGCCCTGCCCCGCGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 52 Combined Motif Reverse Complement Reverse Complement CCKSMGBSCAGGGBTHGYYCYAGGATTC GGTGGAGCTGCCTGCCAGTC CCKSMGBSCAGGGGTVGWBCTRSSWKYCAGTC Direction: Forward Position #: 13 Overlap #: 16 Alignment: CCKSMGBSCAGGGBTHGYYCYAGGATTC---- ------------GGTGGAGCTGCCTGCCAGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 122 Combined Motif Reverse Complement Original Motif GACTGKRWSSMAGBWCVACCCCTGSBCYSYGG CCTTGGCCAGCCCAGAAAG GACTGKRWSSMAGBCCTWSSCCWGCCCWGHRRG Direction: Forward Position #: 15 Overlap #: 18 Alignment: GACTGKRWSSMAGBWCVACCCCTGSBCYSYGG- --------------CCTTGGCCAGCCCAGAAAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 252 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 252 Motif 226 Reverse Complement Reverse Complement CCMKGCTAATT CCATGTTTATT CCMTGYTWATT Direction: Forward Position #: 1 Overlap #: 11 Alignment: CCMKGCTAATT CCATGTTTATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 38 Original Motif Original Motif CCMTGYTWATT GCAGTGAGCYRAGA GCAGYSAKSYKWRWT Direction: Forward Position #: 5 Overlap #: 10 Alignment: ----CCMTGYTWATT GCAGTGAGCYRAGA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 160 Reverse Complement Reverse Complement AWKWRKSYTSKCTGC TACCTGAGACTGGGTAATTT TACCTGADDYTGGSTVDYTKC Direction: Forward Position #: 7 Overlap #: 14 Alignment: ------AWKWRKSYTSKCTGC TACCTGAGACTGGGTAATTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 306 Combined Motif Reverse Complement Reverse Complement GRAKDBASCCAKDHTCAGGTA CAAGCGCCAGCTCATGTC GRAKDBASCMAGHBYCAGSTMATGTC Direction: Forward Position #: 9 Overlap #: 13 Alignment: GRAKDBASCCAKDHTCAGGTA----- --------CAAGCGCCAGCTCATGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 330 Combined Motif Reverse Complement Reverse Complement GACATRASCTGMBDCTYGSTVDYTKC ATAAAAACTTGCTGGTTTT GACATRASCTGATAMWARCTHGCTGSTTTT Direction: Forward Position #: 12 Overlap #: 15 Alignment: GACATRASCTGMBDCTYGSTVDYTKC---- -----------ATAAAAACTTGCTGGTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 253 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 253 Motif 231 Reverse Complement Original Motif ACAGAGTGAGACTCT ACAAGGCAAGTCCCTTCY ASRSARKKMSMYTCTACA Direction: Backward Position #: 1 Overlap #: 15 Alignment: ---ACAGAGTGAGACTCT ACAAGGCAAGTCCCTTCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 43 Original Motif Original Motif ASRSARKKMSMYTCTACA GCCAGGCAGAGRGKCTCCT GCCAGGCAGAGAGKYWCCTTCTACA Direction: Forward Position #: 8 Overlap #: 12 Alignment: -------ASRSARKKMSMYTCTACA GCCAGGCAGAGRGKCTCCT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 13 Combined Motif Original Motif Reverse Complement GCCAGGCAGAGAGKYWCCTTCTACA GGCAATGCCTCGCCCTGCTT GCCAGGCAGAGRSDHTSCYTCKMCMTGCTT Direction: Forward Position #: 11 Overlap #: 15 Alignment: GCCAGGCAGAGAGKYWCCTTCTACA----- ----------GGCAATGCCTCGCCCTGCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 177 Combined Motif Original Motif Original Motif GCCAGGCAGAGRSDHTSCYTCKMCMTGCTT CCCGAAGCTGCRYRCTCGGT GCCAGGCAGAGRSCCYGMMKCTVCVTGCTTGGT Direction: Forward Position #: 14 Overlap #: 17 Alignment: GCCAGGCAGAGRSDHTSCYTCKMCMTGCTT--- -------------CCCGAAGCTGCRYRCTCGGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 109 Combined Motif Original Motif Reverse Complement GCCAGGCAGAGRSCCYGMMKCTVCVTGCTTGGT TCTCTCTCTCTCTCTCTCTC GCCAGGCAGAGRSCYYKMTBYYBCDYKCTYKSTC Direction: Forward Position #: 15 Overlap #: 19 Alignment: GCCAGGCAGAGRSCCYGMMKCTVCVTGCTTGGT- --------------TCTCTCTCTCTCTCTCTCTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 254 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 254 Motif 83 Original Motif Original Motif AAAATCACAAGCATTCCTAT AAAATGTGGTAYATAYAYAC AAAATSWSRWRYATWYMTAY Direction: Forward Position #: 1 Overlap #: 20 Alignment: AAAATCACAAGCATTCCTAT AAAATGTGGTAYATAYAYAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 176 Combined Motif Original Motif Reverse Complement AAAATSWSRWRYATWYMTAY AACAACASACACTGGGGCCT AAAATSWSAAVMAYACAYACTGGGGCCT Direction: Forward Position #: 9 Overlap #: 12 Alignment: AAAATSWSRWRYATWYMTAY-------- --------AACAACASACACTGGGGCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 63 Combined Motif Original Motif Reverse Complement AAAATSWSAAVMAYACAYACTGGGGCCT AAAMAMMKMATGTTCTCACT AAAATSWSAAVMAAACACMBHRKGKYCTCACT Direction: Forward Position #: 13 Overlap #: 16 Alignment: AAAATSWSAAVMAYACAYACTGGGGCCT---- ------------AAAMAMMKMATGTTCTCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 58 Combined Motif Reverse Complement Original Motif AGTGAGMRCRKHBYGTGTTTYVTTSWSATTTT ATGGACAYTTRGGTTGHTTC AGTGAGMRCRKHBYRTGKWYABTTVDGWTKTTTC Direction: Forward Position #: 15 Overlap #: 18 Alignment: AGTGAGMRCRKHBYGTGTTTYVTTSWSATTTT-- --------------ATGGACAYTTRGGTTGHTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 160 Combined Motif Reverse Complement Reverse Complement GAAARAWCHVAABTMWYCAKMBHRKGKYCTCACT TACCTGAGACTGGGTAATTT GAAARAWCHVAABTMTACMTVAGABKGKSTMAYTT Direction: Forward Position #: 16 Overlap #: 19 Alignment: GAAARAWCHVAABTMWYCAKMBHRKGKYCTCACT- ---------------TACCTGAGACTGGGTAATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 255 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 255 Motif 137 Reverse Complement Original Motif TTTGTTATAGCAG AGGTTTGTTACATAGGTAWA AGGTTTKKTWMWWRSRKAWA Direction: Forward Position #: 5 Overlap #: 13 Alignment: ----TTTGTTATAGCAG--- AGGTTTGTTACATAGGTAWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 299 Combined Motif Original Motif Reverse Complement AGGTTTKKTWMWWRSRKAWA TTGGAGGTTCTAGCAGGG AGGTTTKKTTVGAGGDTMTAGCAGGG Direction: Forward Position #: 9 Overlap #: 12 Alignment: AGGTTTKKTWMWWRSRKAWA------ --------TTGGAGGTTCTAGCAGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 117 Combined Motif Reverse Complement Original Motif CCCTGCTAYADCCTCVAAYRAAACCT AACAACAACAACAAMAA CCCTGCTAYADMMYAAMAHVAAMMMWAA Direction: Forward Position #: 12 Overlap #: 15 Alignment: CCCTGCTAYADCCTCVAAYRAAACCT-- -----------AACAACAACAACAAMAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 196 Combined Motif Reverse Complement Reverse Complement TTWYYYTTVHTRTTKYYDTMTAGCAGGG CAAGCCTSKGCAATGGCAGG TTWYYYTTVHTRCWAKCHTMKRSMAKGGCAGG Direction: Forward Position #: 13 Overlap #: 16 Alignment: TTWYYYTTVHTRTTKYYDTMTAGCAGGG---- ------------CAAGCCTSKGCAATGGCAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 21 Combined Motif Original Motif Original Motif TTWYYYTTVHTRCWAKCHTMKRSMAKGGCAGG GCCGTTTKTTAAGCCCGTY TTWYYYTTVHTRCWRCCVTHTDYWADGSCMGKY Direction: Forward Position #: 15 Overlap #: 18 Alignment: TTWYYYTTVHTRCWAKCHTMKRSMAKGGCAGG- --------------GCCGTTTKTTAAGCCCGTY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 256 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 256 Motif 242 Original Motif Original Motif RCAGTGTACACTGY AACCCTATTGTGAACTGYG AACCSYAKTGTRMACTGYG Direction: Forward Position #: 5 Overlap #: 14 Alignment: ----RCAGTGTACACTGY- AACCCTATTGTGAACTGYG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 176 Original Motif Original Motif AACCSYAKTGTRMACTGYG AGGCCCCAGTGTSTGTTGTT AGGCCCCARWSYSTRTTGTWMACTGYG Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------AACCSYAKTGTRMACTGYG AGGCCCCAGTGTSTGTTGTT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 70 Combined Motif Reverse Complement Reverse Complement CKCAGTYWACAAKASMSWKTGGGGCCT GCAGCAMTATTCACAATAG CKCAGTYWACARBAGCVHTWKKSRCMWTAG Direction: Forward Position #: 12 Overlap #: 16 Alignment: CKCAGTYWACAAKASMSWKTGGGGCCT--- -----------GCAGCAMTATTCACAATAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 112 Combined Motif Original Motif Reverse Complement CKCAGTYWACARBAGCVHTWKKSRCMWTAG CTTGCCCAAGGTCACACAGC CKCAGTYWACARBMKYGMYHDDGGYCAYASAGC Direction: Forward Position #: 14 Overlap #: 17 Alignment: CKCAGTYWACARBAGCVHTWKKSRCMWTAG--- -------------CTTGCCCAAGGTCACACAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 357 Combined Motif Original Motif Reverse Complement CKCAGTYWACARBMKYGMYHDDGGYCAYASAGC TAATTTTATGTGTCAACTTG CKCAGTYWACARBMTAAYTTTABGTSWCAVMKYG Direction: Forward Position #: 15 Overlap #: 19 Alignment: CKCAGTYWACARBMKYGMYHDDGGYCAYASAGC- --------------TAATTTTATGTGTCAACTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 257 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 257 Motif 63 Original Motif Original Motif GAGAACACATGGACA AGTGAGAACATRYRRTRTTT TTGAGAACAYATGGWSWAGT Direction: Backward Position #: 3 Overlap #: 15 Alignment: ---GAGAACACATGGACA-- AGTGAGAACATRYRRTRTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 221 Combined Motif Reverse Complement Reverse Complement ACTWSWCCATMTGTTCTCAA GTGTCCCCTTCCTCCC ACTWSWCCVTVTSYYCTYMMTCCC Direction: Forward Position #: 9 Overlap #: 12 Alignment: ACTWSWCCATMTGTTCTCAA---- --------GTGTCCCCTTCCTCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 33 Combined Motif Original Motif Original Motif ACTWSWCCVTVTSYYCTYMMTCCC ACGCCCACGGAGTCTC ACTWSWCCVTAYGCCCWCVVWSYCTC Direction: Forward Position #: 11 Overlap #: 14 Alignment: ACTWSWCCVTVTSYYCTYMMTCCC-- ----------ACGCCCACGGAGTCTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 25 Combined Motif Original Motif Reverse Complement ACTWSWCCVTAYGCCCWCVVWSYCTC GTACCTCAGWTGGAAATG ACTWSWCCVTAKKMCCTCAGWBSSWMATG Direction: Forward Position #: 12 Overlap #: 15 Alignment: ACTWSWCCVTAYGCCCWCVVWSYCTC--- -----------GTACCTCAGWTGGAAATG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 294 Combined Motif Reverse Complement Original Motif CATYWSSVWCTGAGGYRYTAVGGWSWAGT AGCTGTGAGAAGAGGGCCAC CATYWSSVWCTGAGSTGTKAGRRDADRGYCAC Direction: Forward Position #: 13 Overlap #: 17 Alignment: CATYWSSVWCTGAGGYRYTAVGGWSWAGT--- ------------AGCTGTGAGAAGAGGGCCAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 258 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 258 Motif 144 Original Motif Reverse Complement CCACCAACAGTGTAY GGGCTCCCACAGTGCAGCGG GGCYMCCAMMRKKSWRCGGG Direction: Backward Position #: 3 Overlap #: 15 Alignment: ---CCACCAACAGTGTAY-- GGGCTCCCACAGTGCAGCGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 330 Combined Motif Original Motif Original Motif GGCYMCCAMMRKKSWRCGGG AAAACCAGCAAGTTTTTAT GGCYMCCAAAAWBCAGCRRGTTTTTAT Direction: Forward Position #: 9 Overlap #: 12 Alignment: GGCYMCCAMMRKKSWRCGGG------- --------AAAACCAGCAAGTTTTTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 193 Combined Motif Reverse Complement Original Motif ATAAAAACMKGCTGBWTTTTGGYMGCC ATACAATGGGGGTACAGRC ATAAAAACMKGMTRCAWTKKGGBHRCMGRC Direction: Forward Position #: 12 Overlap #: 16 Alignment: ATAAAAACMKGCTGBWTTTTGGYMGCC--- -----------ATACAATGGGGGTACAGRC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 62 Combined Motif Reverse Complement Reverse Complement GKCYGKHVCCRYAWTGKAYCRRGTTTTTAT GTAGACKGGAGCTGTTCCT GKCYGKHVCCRYAGTRGACYGGRKYTKTWYCT Direction: Forward Position #: 14 Overlap #: 17 Alignment: GKCYGKHVCCRYAWTGKAYCRRGTTTTTAT-- -------------GTAGACKGGAGCTGTTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 33 Combined Motif Original Motif Reverse Complement GKCYGKHVCCRYAGTRGACYGGRKYTKTWYCT GAGACTCCGTGGGCGT GKCYGKHVCCRYAGKAGACTSSGTBKGYDTCT Direction: Forward Position #: 15 Overlap #: 16 Alignment: GKCYGKHVCCRYAGTRGACYGGRKYTKTWYCT --------------GAGACTCCGTGGGCGT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 259 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 259 Motif 169 Reverse Complement Reverse Complement TAATAAGGGTGTGGG TTTTATAGGATTTGGG TTWWWWAGGRTKTGGG Direction: Forward Position #: 2 Overlap #: 15 Alignment: -TAATAAGGGTGTGGG TTTTATAGGATTTGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 312 Reverse Complement Reverse Complement CCCARAMCCTWWWWAA CCCMKGGCACCCTCAGTCCT CCCMKGGCMCMMWCMSTHHTWAA Direction: Forward Position #: 8 Overlap #: 13 Alignment: -------CCCARAMCCTWWWWAA CCCMKGGCACCCTCAGTCCT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 349 Combined Motif Original Motif Reverse Complement CCCMKGGCMCMMWCMSTHHTWAA TTCAMTCATGATTTGGCTCT CCCMKGGCMYHCACHCWTVWTWWGGCTCT Direction: Forward Position #: 10 Overlap #: 14 Alignment: CCCMKGGCMCMMWCMSTHHTWAA------ ---------TTCAMTCATGATTTGGCTCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 330 Combined Motif Original Motif Original Motif CCCMKGGCMYHCACHCWTVWTWWGGCTCT AAAACCAGCAAGTTTTTAT CCCMKGGCMYHCAAAMYYARYAAGKYTYTAT Direction: Forward Position #: 13 Overlap #: 17 Alignment: CCCMKGGCMYHCACHCWTVWTWWGGCTCT-- ------------AAAACCAGCAAGTTTTTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 98 Combined Motif Reverse Complement Original Motif ATAMAMRCTTKMTKKYTTTGHKYGCCYRGGG AGTTCCGGGTGGGCGTGGG ATAMAMRCTTKMTRGTTCYGVGTGSSCGKGGG Direction: Forward Position #: 14 Overlap #: 18 Alignment: ATAMAMRCTTKMTKKYTTTGHKYGCCYRGGG- -------------AGTTCCGGGTGGGCGTGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 260 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 260 Motif 84 Reverse Complement Original Motif TTMGTCCCAGAGGGGCACC CTGGGTCCCCCAGCAGTGCC YTSGKYCCMSMRGSRSWSCC Direction: Forward Position #: 1 Overlap #: 19 Alignment: TTMGTCCCAGAGGGGCACC- CTGGGTCCCCCAGCAGTGCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 61 Combined Motif Reverse Complement Reverse Complement GGSWSKSCKYSRGGMYCSAM TGGCTTCACCCAGTGGATCC GGSWSKSCTKGVKKCHCCMAGTGGATCC Direction: Forward Position #: 9 Overlap #: 12 Alignment: GGSWSKSCKYSRGGMYCSAM-------- --------TGGCTTCACCCAGTGGATCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 155 Combined Motif Original Motif Reverse Complement GGSWSKSCTKGVKKCHCCMAGTGGATCC GCCKCCCCGTCCGGGAGGGA GGSWSKSCTKGVGBCDCCMMGTSSRKSMGGGA Direction: Forward Position #: 13 Overlap #: 16 Alignment: GGSWSKSCTKGVKKCHCCMAGTGGATCC---- ------------GCCKCCCCGTCCGGGAGGGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 29 Combined Motif Reverse Complement Reverse Complement TCCCYSRKSSACRRGGHGBCVCYAGSRSWSCC MGTCTMKCTCTGTKGCCCAG TCCCYSRKSSACRRRGTSTCGCTMKGWBDCCCAG Direction: Forward Position #: 15 Overlap #: 18 Alignment: TCCCYSRKSSACRRGGHGBCVCYAGSRSWSCC-- --------------MGTCTMKCTCTGTKGCCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 85 Combined Motif Original Motif Original Motif TCCCYSRKSSACRRRGTSTCGCTMKGWBDCCCAG CTAGACATAAAGGTTCTCCA TCCCYSRKSSACRRRSTAKMSMTARRGGTYCYMSA Direction: Forward Position #: 16 Overlap #: 19 Alignment: TCCCYSRKSSACRRRGTSTCGCTMKGWBDCCCAG- ---------------CTAGACATAAAGGTTCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 261 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 261 Motif 336 Original Motif Original Motif ATCTCASAAATCACCACTA ATGTAACCAAAYACCACCTG GATSTMACMAAWCACCACYW Direction: Backward Position #: 2 Overlap #: 19 Alignment: ATCTCASAAATCACCACTA- ATGTAACCAAAYACCACCTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Reverse Complement WMGTGGTGWTTYGTYASATC TTTYTWTTTTTTYTWGAGAC WMGTGGTGTTTYKTTWBWTYYTWGAGAC Direction: Forward Position #: 9 Overlap #: 12 Alignment: WMGTGGTGWTTYGTYASATC-------- --------TTTYTWTTTTTTYTWGAGAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 119 Combined Motif Reverse Complement Original Motif GTCTCWAMKAWVWAARMAAACACCACYW AAGTCCAAGATCAAGGTGYY GTCTCWAMKAWVAARDCMAAVAYCAMBDTGYY Direction: Forward Position #: 13 Overlap #: 16 Alignment: GTCTCWAMKAWVWAARMAAACACCACYW---- ------------AAGTCCAAGATCAAGGTGYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 332 Combined Motif Original Motif Reverse Complement GTCTCWAMKAWVAARDCMAAVAYCAMBDTGYY GTTTAACCATTGAGGGCCAG GTCTCWAMKAWVAAGTYTAACMMYWGAGKGCCAG Direction: Forward Position #: 15 Overlap #: 18 Alignment: GTCTCWAMKAWVAARDCMAAVAYCAMBDTGYY-- --------------GTTTAACCATTGAGGGCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 178 Combined Motif Original Motif Reverse Complement GTCTCWAMKAWVAAGTYTAACMMYWGAGKGCCAG ATGTGGAGGTGGAAGACAGT GTCTCWAMKAWVAAGWTKWRSAVKTGRRRGMCAGT Direction: Forward Position #: 16 Overlap #: 19 Alignment: GTCTCWAMKAWVAAGTYTAACMMYWGAGKGCCAG- ---------------ATGTGGAGGTGGAAGACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 262 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 262 Motif 293 Original Motif Original Motif CTCAGTGTTAATCTCCTGTC CTGACTGGGAGACACCTCCC CTSASTGKKARWCWCCTSYC Direction: Backward Position #: 1 Overlap #: 20 Alignment: CTCAGTGTTAATCTCCTGTC CTGACTGGGAGACACCTCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 350 Combined Motif Reverse Complement Original Motif GKSAGGWGWKTYRCASTSAG TCTGGAGTGGACCTCCAGCA GKSAGGWGTBTBGMRYKGASCTCCAGCA Direction: Forward Position #: 9 Overlap #: 12 Alignment: GKSAGGWGWKTYRCASTSAG-------- --------TCTGGAGTGGACCTCCAGCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 104 Combined Motif Original Motif Original Motif GKSAGGWGTBTBGMRYKGASCTCCAGCA CAACATGGATGRARCTGGAG GKSAGGWGTBTBSAACDKRGMTSVAGCWGGAG Direction: Forward Position #: 13 Overlap #: 16 Alignment: GKSAGGWGTBTBGMRYKGASCTCCAGCA---- ------------CAACATGGATGRARCTGGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 64 Combined Motif Original Motif Reverse Complement GKSAGGWGTBTBSAACDKRGMTSVAGCWGGAG KCCGGGCCTTAGCTGCCTTC GKSAGGWGTBTBSARCHKGGCYBTAGCTGSMKTC Direction: Forward Position #: 15 Overlap #: 18 Alignment: GKSAGGWGTBTBSAACDKRGMTSVAGCWGGAG-- --------------KCCGGGCCTTAGCTGCCTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 26 Original Motif Reverse Complement GKSAGGWGTBTBSARCHKGGCYBTAGCTGSMKTC TMGGGAGGCTGAGGCAGGAG TMGGGAGGCWGRDGHHKGARRCHKGGCYBTAGCTGSMKTC Direction: Forward Position #: 7 Overlap #: 14 Alignment: ------GKSAGGWGTBTBSARCHKGGCYBTAGCTGSMKTC TMGGGAGGCTGAGGCAGGAG-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 263 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 263 Motif 84 Reverse Complement Reverse Complement GGCAGAGCTGGG GGCACTGCTGGGGGACCCAG GGCASWGCTGGGGGACCCAG Direction: Forward Position #: 1 Overlap #: 12 Alignment: GGCAGAGCTGGG-------- GGCACTGCTGGGGGACCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 183 Combined Motif Reverse Complement Original Motif CTGGGTCCCCCAGCWSTGCC GCCRGCCCTGCYGGCC CTGGGTCCSCCAGCCCTGCCGGCC Direction: Forward Position #: 9 Overlap #: 12 Alignment: CTGGGTCCCCCAGCWSTGCC---- --------GCCRGCCCTGCYGGCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 78 Combined Motif Original Motif Reverse Complement CTGGGTCCSCCAGCCCTGCCGGCC CCGCGGGGCAGGGCTCG CTGGGTCCSCCMGCVSKGCMGGSCTCG Direction: Forward Position #: 11 Overlap #: 14 Alignment: CTGGGTCCSCCAGCCCTGCCGGCC--- ----------CCGCGGGGCAGGGCTCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Reverse Complement Original Motif CGAGSCCYGCYSVGCRGGSGGACCCAG CTCCTGCCTCAGCCTCCCRA CGAGSCCYGCYCTSCBGSCKSASCCWSCCRA Direction: Forward Position #: 12 Overlap #: 16 Alignment: CGAGSCCYGCYSVGCRGGSGGACCCAG---- -----------CTCCTGCCTCAGCCTCCCRA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 138 Combined Motif Original Motif Reverse Complement CGAGSCCYGCYCTSCBGSCKSASCCWSCCRA GGSKGATCTGGCTG CGAGSCCYGCYCTGSBGGMTCWGSCTGCCRA Direction: Forward Position #: 14 Overlap #: 14 Alignment: CGAGSCCYGCYCTSCBGSCKSASCCWSCCRA -------------GGSKGATCTGGCTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 264 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 264 Motif 112 Original Motif Reverse Complement CCAAGGTCACA CTTGCCCAAGGTCACACAGC CTTGCCMARGKYMMMACAGC Direction: Forward Position #: 5 Overlap #: 11 Alignment: ----CCAAGGTCACA----- CTTGCCCAAGGTCACACAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 242 Combined Motif Reverse Complement Original Motif GCTGTYRYKRCMTYGGCAAG AACCCTATTGTGAACTGYG GCTGTYRYAACCYTRKYRWGAACTGYG Direction: Forward Position #: 9 Overlap #: 12 Alignment: GCTGTYRYKRCMTYGGCAAG------- --------AACCCTATTGTGAACTGYG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 119 Combined Motif Original Motif Reverse Complement GCTGTYRYAACCYTRKYRWGAACTGYG KKCACCTTGATCTTGGACTT GCTGTYRYAACBBYRBYDTGAWCTKBGACTT Direction: Forward Position #: 12 Overlap #: 16 Alignment: GCTGTYRYAACCYTRKYRWGAACTGYG---- -----------KKCACCTTGATCTTGGACTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 137 Combined Motif Reverse Complement Original Motif AAGTCBYAGWTCADKBKKVBGTTMMMACAGC AGGTTTGTTACATAGGTAWA AAGTCBYAGWTCAAGGTTHGKTACAHASRKMWA Direction: Forward Position #: 14 Overlap #: 18 Alignment: AAGTCBYAGWTCADKBKKVBGTTMMMACAGC-- -------------AGGTTTGTTACATAGGTAWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 291 Combined Motif Original Motif Original Motif AAGTCBYAGWTCAAGGTTHGKTACAHASRKMWA CTGAGGACCTGAGGTCRTA AAGTCBYAGWTCAASKKWGGWYMYRARGDYRTA Direction: Forward Position #: 15 Overlap #: 19 Alignment: AAGTCBYAGWTCAAGGTTHGKTACAHASRKMWA --------------CTGAGGACCTGAGGTCRTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 265 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 265 Motif 180 Reverse Complement Reverse Complement TGCGCATGCGC TGCGCATGCGCA TGCGCATGCGCA Direction: Forward Position #: 1 Overlap #: 11 Alignment: TGCGCATGCGC- TGCGCATGCGCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 100 Reverse Complement Original Motif TGCGCATGCGCA GCTGGCCCGCAAGCGCCGCG GCTGGYSCGCAWGCGCMGCG Direction: Forward Position #: 6 Overlap #: 12 Alignment: -----TGCGCATGCGCA--- GCTGGCCCGCAAGCGCCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 306 Combined Motif Original Motif Reverse Complement GCTGGYSCGCAWGCGCMGCG CAAGCGCCAGCTCATGTC GCTGGYSCSMARSSSCAGCKCATGTC Direction: Forward Position #: 9 Overlap #: 12 Alignment: GCTGGYSCGCAWGCGCMGCG------ --------CAAGCGCCAGCTCATGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 215 Combined Motif Original Motif Reverse Complement GCTGGYSCSMARSSSCAGCKCATGTC GGGRSCACAGGAGCD GCTGGYSCSMAGGGVCMRCWSRWGYC Direction: Forward Position #: 12 Overlap #: 15 Alignment: GCTGGYSCSMARSSSCAGCKCATGTC -----------GGGRSCACAGGAGCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 51 Combined Motif Original Motif Original Motif GCTGGYSCSMAGGGVCMRCWSRWGYC GTGGGTGCGCGCA GCTGGYSCSMAGKGGSYGCGCGYRYC Direction: Forward Position #: 12 Overlap #: 13 Alignment: GCTGGYSCSMAGGGVCMRCWSRWGYC -----------GTGGGTGCGCGCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 266 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 266 Motif 101 Reverse Complement Original Motif TGCTGCTGCTGC CGCCGCCGCCGC YGCYGCYGCYGC Direction: Backward Position #: 1 Overlap #: 12 Alignment: TGCTGCTGCTGC CGCCGCCGCCGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 313 Reverse Complement Original Motif GCKGCKGCKGCK CTCCTGCCTCAGCY CTCCTGCSKCDGCTGCK Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----GCKGCKGCKGCK CTCCTGCCTCAGCY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 350 Reverse Complement Original Motif YGCAGCDGYSGCAGGAG TCTGGAGTGGACCTCCAGCA TCTGGAGTGSASCTSCVGCAGGAG Direction: Forward Position #: 8 Overlap #: 13 Alignment: -------YGCAGCDGYSGCAGGAG TCTGGAGTGGACCTCCAGCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 229 Combined Motif Original Motif Reverse Complement TCTGGAGTGSASCTSCVGCAGGAG GCGGCAGCAAGGC TCTGGAGTGSRCSKCMGSMAGGMG Direction: Forward Position #: 11 Overlap #: 13 Alignment: TCTGGAGTGSASCTSCVGCAGGAG ----------GCGGCAGCAAGGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 184 Combined Motif Reverse Complement Reverse Complement CRCCTRSCYGYSGMSCACTCCAGA GGTCAGGATCATCAATAT CRCCTRSCYGBGKCASRMTCMWSAATAT Direction: Forward Position #: 11 Overlap #: 14 Alignment: CRCCTRSCYGYSGMSCACTCCAGA---- ----------GGTCAGGATCATCAATAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 267 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 267 Motif 291 Original Motif Original Motif ATGGACTTGAGA CTGAGGACCTGAGGTCRTA TCRTARWGGACYTGAGRCT Direction: Backward Position #: 6 Overlap #: 12 Alignment: --ATGGACTTGAGA----- CTGAGGACCTGAGGTCRTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 21 Combined Motif Reverse Complement Reverse Complement AGMCTCAKGTCCWMTAMGA KACGGGCTTAARAAACGGC AGMCTCAKRYSSDCTWARAAAACGGC Direction: Forward Position #: 8 Overlap #: 12 Alignment: AGMCTCAKGTCCWMTAMGA------- -------KACGGGCTTAARAAACGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 62 Combined Motif Original Motif Reverse Complement AGMCTCAKRYSSDCTWARAAAACGGC GTAGACKGGAGCTGTTCCT AGMCTCAKRYSGTMKAMDRRARCKGYTCCT Direction: Forward Position #: 12 Overlap #: 15 Alignment: AGMCTCAKRYSSDCTWARAAAACGGC---- -----------GTAGACKGGAGCTGTTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 232 Combined Motif Original Motif Original Motif AGMCTCAKRYSGTMKAMDRRARCKGYTCCT AGTTGTAATTGGGAGACTT AGMCTCAKRYSGTAGWYGTAADYGGBWSMYTT Direction: Forward Position #: 14 Overlap #: 17 Alignment: AGMCTCAKRYSGTMKAMDRRARCKGYTCCT-- -------------AGTTGTAATTGGGAGACTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 166 Combined Motif Original Motif Original Motif AGMCTCAKRYSGTAGWYGTAADYGGBWSMYTT AAGGGACATTKGAG AGMCTCAKRYSGTARABGGAMATKGGAGMYTT Direction: Forward Position #: 15 Overlap #: 14 Alignment: AGMCTCAKRYSGTAGWYGTAADYGGBWSMYTT --------------AAGGGACATTKGAG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 268 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 268 Motif 32 Original Motif Original Motif ATAGTGAGACC ATGGTGAAACCC ATRGTGARACCC Direction: Forward Position #: 1 Overlap #: 11 Alignment: ATAGTGAGACC- ATGGTGAAACCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 253 Original Motif Reverse Complement ATRGTGARACCC ACAGAGTGAGACTCT ACAGAKDGWGASWCYC Direction: Forward Position #: 5 Overlap #: 11 Alignment: ----ATRGTGARACCC ACAGAGTGAGACTCT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 29 Original Motif Original Motif ACAGAKDGWGASWCYC CTGGGCRACAGAGYRAGACY CTGGGCRACAGAGBGAGACWCYC Direction: Forward Position #: 8 Overlap #: 13 Alignment: -------ACAGAKDGWGASWCYC CTGGGCRACAGAGYRAGACY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 232 Combined Motif Original Motif Original Motif CTGGGCRACAGAGBGAGACWCYC AGTTGTAATTGGGAGACTT CTGGGCRACAGWKGKARWYKSBMGACTT Direction: Forward Position #: 10 Overlap #: 14 Alignment: CTGGGCRACAGAGBGAGACWCYC----- ---------AGTTGTAATTGGGAGACTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 204 Combined Motif Reverse Complement Reverse Complement AAGTCYBSYMWKTRCRWCTGTKGCCCAG GGAGTCTMKCTCT AAGTCYBSYMWKKGMGTCTSKCKCYCAG Direction: Forward Position #: 13 Overlap #: 13 Alignment: AAGTCYBSYMWKTRCRWCTGTKGCCCAG ------------GGAGTCTMKCTCT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 269 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 269 Motif 225 Reverse Complement Original Motif GCACATGTCGCT GCACATGTAYCCYAGAACTT RCMCMWGWMSYTGCACATGT Direction: Backward Position #: 1 Overlap #: 12 Alignment: --------GCACATGTCGCT GCACATGTAYCCYAGAACTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 166 Combined Motif Reverse Complement Reverse Complement ACATGTGCAKSRWCWYGRGK CTCRAATGTCCCTT ACATGTGCMKCRAMTBKVSYTT Direction: Forward Position #: 9 Overlap #: 12 Alignment: ACATGTGCAKSRWCWYGRGK-- --------CTCRAATGTCCCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 157 Combined Motif Original Motif Original Motif ACATGTGCMKCRAMTBKVSYTT GCGCACGGCGCGG ACATGTGCMGCGMAYGGCGCKK Direction: Forward Position #: 10 Overlap #: 13 Alignment: ACATGTGCMKCRAMTBKVSYTT ---------GCGCACGGCGCGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 230 Combined Motif Reverse Complement Reverse Complement YRGCGCCMTRCGCYGCACATGT TTTTCACATGCCTTTCT YRGCGCCMTTYKYCRCAYRYSTTTCT Direction: Forward Position #: 10 Overlap #: 13 Alignment: YRGCGCCMTRCGCYGCACATGT---- ---------TTTTCACATGCCTTTCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 23 Combined Motif Original Motif Original Motif YRGCGCCMTTYKYCRCAYRYSTTTCT GGTTCATCTCACTAGGGAGT YRGCGCCMTTYGKYWCATSTCWYTMKGGAGT Direction: Forward Position #: 12 Overlap #: 15 Alignment: YRGCGCCMTTYKYCRCAYRYSTTTCT----- -----------GGTTCATCTCACTAGGGAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 270 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 270 Motif 136 Reverse Complement Original Motif CCTMACAATCATGG CCCTCACTGCCCGGGG GCCTCACWRYCMKGGC Direction: Backward Position #: 2 Overlap #: 14 Alignment: -CCTMACAATCATGG- CCCTCACTGCCCGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 95 Reverse Complement Reverse Complement GCCRYGMKWGTGAGGC CACCTCCCAGACMGGGT CACCTCSCMGASMGDGTGAGGC Direction: Forward Position #: 7 Overlap #: 11 Alignment: ------GCCRYGMKWGTGAGGC CACCTCCCAGACMGGGT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 189 Combined Motif Reverse Complement Reverse Complement GCCTCACHCYSTCRGSGAGGTG CAATGATAGACTGGAT GCCTCACHCCAWYGRKRRASTGGAT Direction: Forward Position #: 10 Overlap #: 13 Alignment: GCCTCACHCYSTCRGSGAGGTG--- ---------CAATGATAGACTGGAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 254 Combined Motif Original Motif Reverse Complement GCCTCACHCCAWYGRKRRASTGGAT ATAGGAATGCTTGTGATTTT GCCTCACHCCATAGGDADRCTKGWKATTTT Direction: Forward Position #: 11 Overlap #: 15 Alignment: GCCTCACHCCAWYGRKRRASTGGAT----- ----------ATAGGAATGCTTGTGATTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 201 Combined Motif Original Motif Reverse Complement GCCTCACHCCATAGGDADRCTKGWKATTTT ACCKTCGCGGTGAGTGTTAC GCCTCACHCCATARSCDTVSYKGTGAKTKTTAC Direction: Forward Position #: 14 Overlap #: 17 Alignment: GCCTCACHCCATAGGDADRCTKGWKATTTT--- -------------ACCKTCGCGGTGAGTGTTAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 271 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 271 Motif 307 Original Motif Reverse Complement AGGGATCTAGGTTGCR AGAGCTCTGGCTGGCATCT TCTAGRGMTCTRGSTKGCA Direction: Backward Position #: 4 Overlap #: 16 Alignment: AGGGATCTAGGTTGCR--- AGAGCTCTGGCTGGCATCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 58 Original Motif Reverse Complement TCTAGRGMTCTRGSTKGCA GAAHCAACCKAAKTGTCCAT GAAHCAACYBWAGDGHYCWDGSTKGCA Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------TCTAGRGMTCTRGSTKGCA GAAHCAACCKAAKTGTCCAT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 64 Combined Motif Reverse Complement Reverse Complement TGCRASCDWGMHCDCTWBMGTTGHTTC KCCGGGCCTTAGCTGCCTTC TGCRASCDWGMDCVSKKCCKTWGCTKCCTTC Direction: Forward Position #: 12 Overlap #: 16 Alignment: TGCRASCDWGMHCDCTWBMGTTGHTTC---- -----------KCCGGGCCTTAGCTGCCTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Combined Motif Original Motif Reverse Complement TGCRASCDWGMDCVSKKCCKTWGCTKCCTTC MGGGATATAATCTCCTGGTG TGCRASCDWGMDCMGGGMYATARYYTCCTKSTG Direction: Forward Position #: 14 Overlap #: 18 Alignment: TGCRASCDWGMDCVSKKCCKTWGCTKCCTTC-- -------------MGGGATATAATCTCCTGGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 311 Combined Motif Original Motif Original Motif TGCRASCDWGMDCMGGGMYATARYYTCCTKSTG GGCATCACGGATCCTACCAA TGCRASCDWGMDCMGGSATMWMGKATCCTRCYRA Direction: Forward Position #: 15 Overlap #: 19 Alignment: TGCRASCDWGMDCMGGGMYATARYYTCCTKSTG- --------------GGCATCACGGATCCTACCAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 272 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 272 Motif 334 Original Motif Original Motif CAGCTGTCAC CATCTGTCAC CAKCTGTCAC Direction: Forward Position #: 1 Overlap #: 10 Alignment: CAGCTGTCAC CATCTGTCAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 199 Reverse Complement Reverse Complement GTGACAGYTG GGTGCCAGCTGT GKKRCMRBYKGT Direction: Forward Position #: 1 Overlap #: 10 Alignment: GTGACAGYTG-- GGTGCCAGCTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 1 Original Motif Original Motif GKKRCMRBYKGT GGGGTGACAGABGB GGGGTGDYASADGBKGT Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----GKKRCMRBYKGT GGGGTGACAGABGB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 325 Combined Motif Reverse Complement Reverse Complement ACRVCHTSTKDCACCCC TATTTACAGCTGCT ACRVCHTATTTMMMSCYGCT Direction: Forward Position #: 7 Overlap #: 11 Alignment: ACRVCHTSTKDCACCCC--- ------TATTTACAGCTGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Reverse Complement Reverse Complement AGCMGSYYYAAATADGBKGT GGRRMCAGATGT AGCMGSYYBRRRHMAGATGT Direction: Forward Position #: 9 Overlap #: 12 Alignment: AGCMGSYYYAAATADGBKGT --------GGRRMCAGATGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 273 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 273 Motif 365 Original Motif Original Motif AGCCTAGGCCTAC AGCTCCGGTCTAC AGCYYMGGYCTAC Direction: Forward Position #: 1 Overlap #: 13 Alignment: AGCCTAGGCCTAC AGCTCCGGTCTAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 13 Original Motif Reverse Complement AGCYYMGGYCTAC GGCAATGCCTCGCCCTGCTT GGCAAWGCCTCGSCCTRCTT Direction: Forward Position #: 6 Overlap #: 13 Alignment: -----AGCYYMGGYCTAC-- GGCAATGCCTCGCCCTGCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 62 Combined Motif Reverse Complement Original Motif AAGKAGGSCGAGGCWTTGCC AGGAACAGCTCCRGTCTAC AAGKAGGSMGRRRCAKYKCCRGTCTAC Direction: Forward Position #: 9 Overlap #: 12 Alignment: AAGKAGGSCGAGGCWTTGCC------- --------AGGAACAGCTCCRGTCTAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 64 Combined Motif Original Motif Reverse Complement AAGKAGGSMGRRRCAKYKCCRGTCTAC KCCGGGCCTTAGCTGCCTTC AAGKAGGSMGRDVCRGSBCYWRKCTRCCTTC Direction: Forward Position #: 12 Overlap #: 16 Alignment: AAGKAGGSMGRRRCAKYKCCRGTCTAC---- -----------KCCGGGCCTTAGCTGCCTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Reverse Complement Original Motif GAAGGMAGRMWMGBSCMGVHMCYSCCTRCTT CTCCTGCCTCAGCCTCCCRA GAAGGMAGRMWMGCTCCKGCCYCVSCYDCYTRA Direction: Forward Position #: 14 Overlap #: 18 Alignment: GAAGGMAGRMWMGBSCMGVHMCYSCCTRCTT-- -------------CTCCTGCCTCAGCCTCCCRA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 274 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 274 Motif 24 Original Motif Original Motif CTGGTCAAGGAAA CKAGTCAAAGAAA CTRGTCAARGAAA Direction: Forward Position #: 1 Overlap #: 13 Alignment: CTGGTCAAGGAAA CKAGTCAAAGAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 331 Original Motif Original Motif CTRGTCAARGAAA CCACCACAGCTCAAGGAGGC CCACCMYAGYYMAAGRARGC Direction: Forward Position #: 6 Overlap #: 13 Alignment: -----CTRGTCAARGAAA-- CCACCACAGCTCAAGGAGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 135 Combined Motif Reverse Complement Original Motif GCKTKCTTYKKCTKRGGTGG CTCTTGTTGCCCAG GCKTKCTTCTBYTGTKGYSSAG Direction: Forward Position #: 9 Overlap #: 12 Alignment: GCKTKCTTYKKCTKRGGTGG-- --------CTCTTGTTGCCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 179 Combined Motif Reverse Complement Original Motif CTSSKCYACAMBAGAAGRARGC AGGTCCTTCAGGAGGTATTC CTSSKCYACAVGWSMWKVAGGMGGTATTC Direction: Forward Position #: 10 Overlap #: 13 Alignment: CTSSKCYACAMBAGAAGRARGC------- ---------AGGTCCTTCAGGAGGTATTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 196 Combined Motif Reverse Complement Original Motif GAATACCYCCTVRWYSWCVTGTKGYSSAG CCTGCCATTGCYSAGGCTTG GAATACCYCCTVVHTGHCATKGCSBAGRSTTG Direction: Forward Position #: 13 Overlap #: 17 Alignment: GAATACCYCCTVRWYSWCVTGTKGYSSAG--- ------------CCTGCCATTGCYSAGGCTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 275 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 275 Motif 48 Reverse Complement Reverse Complement TTTAACTCTGTGAG CGTCGCTCACGCTGGGAGCT CTKYTMACKCTGKGAGCGTC Direction: Backward Position #: 3 Overlap #: 14 Alignment: ----TTTAACTCTGTGAG-- CGTCGCTCACGCTGGGAGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 137 Combined Motif Original Motif Reverse Complement CTKYTMACKCTGKGAGCGTC TWTACCTATGTAACAAACCT CTKYTMACTMTRBSWRYGTMACAAACCT Direction: Forward Position #: 9 Overlap #: 12 Alignment: CTKYTMACKCTGKGAGCGTC-------- --------TWTACCTATGTAACAAACCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 144 Combined Motif Original Motif Reverse Complement CTKYTMACTMTRBSWRYGTMACAAACCT GGGCTCCCACAGTGCAGCGG CTKYTMACTMTRGGGVTSYCACARWSCWGCGG Direction: Forward Position #: 13 Overlap #: 16 Alignment: CTKYTMACTMTRBSWRYGTMACAAACCT---- ------------GGGCTCCCACAGTGCAGCGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 326 Combined Motif Reverse Complement Original Motif CCGCWGSWKTGTGMSAVCCCKARAGTYAKRAG GACATGGAGTCAAAGG CCGCWGSWKTGTGMGACMYSGAGWSWAAGRAG Direction: Forward Position #: 15 Overlap #: 16 Alignment: CCGCWGSWKTGTGMSAVCCCKARAGTYAKRAG --------------GACATGGAGTCAAAGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 29 Combined Motif Reverse Complement Reverse Complement CTMCTTWSWCTCSMYGTCYCACARWSCWGCGG MGTCTMKCTCTGTKGCCCAG CTMCTTWSWCTCSMHGTCTMRCWVTGYDGCSSAG Direction: Forward Position #: 15 Overlap #: 18 Alignment: CTMCTTWSWCTCSMYGTCYCACARWSCWGCGG-- --------------MGTCTMKCTCTGTKGCCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 276 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 276 Motif 45 Original Motif Original Motif TGGCCTGTTAGGAA TGCCCAGTCTGGAAAGTG TGSCCWGTYWGGAAAGTG Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGGCCTGTTAGGAA---- TGCCCAGTCTGGAAAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 308 Reverse Complement Original Motif CACTTTCCWMACWGGSCA AAATTAGGCCAATTAATAAC AAATTAGGCMMWTTMMTAACWGGSCA Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------CACTTTCCWMACWGGSCA AAATTAGGCCAATTAATAAC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 305 Combined Motif Original Motif Reverse Complement AAATTAGGCMMWTTMMTAACWGGSCA GCTCTCAATTGGTCATT AAATTAGGCMMGYTCTYAAYTGGKCATT Direction: Forward Position #: 12 Overlap #: 15 Alignment: AAATTAGGCMMWTTMMTAACWGGSCA-- -----------GCTCTCAATTGGTCATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 122 Combined Motif Original Motif Original Motif AAATTAGGCMMGYTCTYAAYTGGKCATT CCTTGGCCAGCCCAGAAAG AAATTAGGCMMGCYYTBRMCWGSCCAKWAAG Direction: Forward Position #: 13 Overlap #: 16 Alignment: AAATTAGGCMMGYTCTYAAYTGGKCATT--- ------------CCTTGGCCAGCCCAGAAAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 100 Combined Motif Original Motif Original Motif AAATTAGGCMMGCYYTBRMCWGSCCAKWAAG GCTGGCCCGCAAGCGCCGCG AAATTAGGCMMGCBCTGGCCHGCMMRBDMMGCG Direction: Forward Position #: 14 Overlap #: 18 Alignment: AAATTAGGCMMGCYYTBRMCWGSCCAKWAAG-- -------------GCTGGCCCGCAAGCGCCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 277 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 277 Motif 96 Reverse Complement Original Motif GCTTCTGGTGAGGGC AAGCTGAGGGAGCCGGCTCC AAGSYKWSKGRKSMGGSYCC Direction: Forward Position #: 4 Overlap #: 15 Alignment: ---GCTTCTGGTGAGGGC-- AAGCTGAGGGAGCCGGCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 84 Combined Motif Reverse Complement Original Motif GGMSCCYSYKCYSWYKSCTT CTGGGTCCCCCAGCAGTGCC GGMSCCYSCTSBGTCCCCYWGCAGTGCC Direction: Forward Position #: 9 Overlap #: 12 Alignment: GGMSCCYSYKCYSWYKSCTT-------- --------CTGGGTCCCCCAGCAGTGCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 48 Combined Motif Original Motif Original Motif GGMSCCYSCTSBGTCCCCYWGCAGTGCC AGCTCCCAGCGTGAGCGACG GGMSCCYSCTSBRKCTCCCAGCRKKRSCGACG Direction: Forward Position #: 13 Overlap #: 16 Alignment: GGMSCCYSCTSBGTCCCCYWGCAGTGCC---- ------------AGCTCCCAGCGTGAGCGACG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 108 Combined Motif Reverse Complement Reverse Complement CGTCGSKRRKGCTGGGAGYKBSAGSMGGSYCC GCGCTCKTCGGGGAGGCTCG CGTCGSKRRKGCTGGSRSTBBKMGGRGRGBCYCG Direction: Forward Position #: 15 Overlap #: 18 Alignment: CGTCGSKRRKGCTGGGAGYKBSAGSMGGSYCC-- --------------GCGCTCKTCGGGGAGGCTCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 122 Combined Motif Reverse Complement Reverse Complement CGMGBCKCMCCYRBBASMSCCAGCRKKRSCGACG CTTTCTGGGCTGGCCAAGG CGMGBCKCMCCYRBBMTHBCYRGSMTGGCCRASG Direction: Forward Position #: 16 Overlap #: 19 Alignment: CGMGBCKCMCCYRBBASMSCCAGCRKKRSCGACG ---------------CTTTCTGGGCTGGCCAAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 278 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 278 Motif 52 Reverse Complement Reverse Complement TGTTATGCCTGAAAGT GGTGGAGCTGCCTGCCAGTC CKGWKMTGCCTGMMAGTGGT Direction: Backward Position #: 2 Overlap #: 16 Alignment: ---TGTTATGCCTGAAAGT- GGTGGAGCTGCCTGCCAGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 357 Combined Motif Reverse Complement Reverse Complement ACCACTYRCAGGCAYYWCYG TAATTTTATGTGTCAACTTG ACCACTYRYARKYWTMWSTGTCAACTTG Direction: Forward Position #: 9 Overlap #: 12 Alignment: ACCACTYRCAGGCAYYWCYG-------- --------TAATTTTATGTGTCAACTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 292 Combined Motif Reverse Complement Original Motif CAAGTTGACASWYAWKYMTKMMAGTGGT AAGACCTTCCAGTGGGACAA CAAGTTGACASWAADACCTTCCAGTGGKACAA Direction: Forward Position #: 13 Overlap #: 16 Alignment: CAAGTTGACASWYAWKYMTKMMAGTGGT---- ------------AAGACCTTCCAGTGGGACAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 102 Combined Motif Reverse Complement Reverse Complement TTGTYCCACTGGAAGGTHTTWSTGTCAACTTG GTTGTGAGGATTAAATGAG TTGTYCCACTGGAAGKTBTKAGKRTYAAMTKRG Direction: Forward Position #: 15 Overlap #: 18 Alignment: TTGTYCCACTGGAAGGTHTTWSTGTCAACTTG- --------------GTTGTGAGGATTAAATGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 254 Combined Motif Reverse Complement Original Motif CMRAYTTKAMRCTRABARCTTCCAGTGGKACAA AAAATCACAAGCATTCCTAT CMRAYTTKAMRCTRAAAAYYWCMAGYRKTMCWAT Direction: Forward Position #: 15 Overlap #: 19 Alignment: CMRAYTTKAMRCTRABARCTTCCAGTGGKACAA- --------------AAAATCACAAGCATTCCTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 279 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 279 Motif 249 Reverse Complement Reverse Complement MGTGTGATGTCTCCCCC TTGGTGGTCTCTTCACA YKKGTGRTSTCTYCMCM Direction: Backward Position #: 1 Overlap #: 17 Alignment: MGTGTGATGTCTCCCCC TTGGTGGTCTCTTCACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 92 Reverse Complement Reverse Complement YGYGMAGASAMCACRRM GGTGGGGGGGTCAGCCCCC GGTGGGGKGBKCAGMCMCCACRRM Direction: Forward Position #: 8 Overlap #: 12 Alignment: -------YGYGMAGASAMCACRRM GGTGGGGGGGTCAGCCCCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 115 Combined Motif Reverse Complement Original Motif YKKGTGGRGRCTGRBCYCCCCACC ATGATCCAGCAATYCCACTH YKKGTGGRGRMTGAYCCMSCMAYCCCACTH Direction: Forward Position #: 11 Overlap #: 14 Alignment: YKKGTGGRGRCTGRBCYCCCCACC------ ----------ATGATCCAGCAATYCCACTH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 350 Combined Motif Reverse Complement Reverse Complement HAGTGGGMTRGSRGGMTCARMCMCCACRRM TGCTGGAGGTCCACTCCAGA HAGTGGGMTRGSRKGCTSRAVSHCCACWMCAGA Direction: Forward Position #: 14 Overlap #: 17 Alignment: HAGTGGGMTRGSRGGMTCARMCMCCACRRM--- -------------TGCTGGAGGTCCACTCCAGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 294 Combined Motif Reverse Complement Reverse Complement TCTGRWGTGGHSVTKSAGCRMSCMAYCCCACTH GTGGCCCTCTTCTCACAGCT TCTGRWGTGGHSVTGTRGCMCYCHWCYCMMMKCT Direction: Forward Position #: 15 Overlap #: 19 Alignment: TCTGRWGTGGHSVTKSAGCRMSCMAYCCCACTH- --------------GTGGCCCTCTTCTCACAGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 280 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 280 Motif 3 Reverse Complement Reverse Complement ACATCMTCTGAAATCTAGG TCKMGCCACTGCACTCCAGC TMBAKCCWCTGMAMTCYAGS Direction: Forward Position #: 2 Overlap #: 19 Alignment: -ACATCMTCTGAAATCTAGG TCKMGCCACTGCACTCCAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 196 Combined Motif Reverse Complement Reverse Complement SCTMGAYTYCAGWGGRTBYA CAAGCCTSKGCAATGGCAGG SCTMGAYTCMAGMSKRKGCAATGGCAGG Direction: Forward Position #: 9 Overlap #: 12 Alignment: SCTMGAYTYCAGWGGRTBYA-------- --------CAAGCCTSKGCAATGGCAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 195 Combined Motif Reverse Complement Original Motif CCTGCCATTGCRMRSRCTYGAMTCYAGS TAAAAGACTACAWATTGGGT CCTGCCATTGCRHRAAMKHSWAYMHAKBGGGT Direction: Forward Position #: 13 Overlap #: 16 Alignment: CCTGCCATTGCRMRSRCTYGAMTCYAGS---- ------------TAAAAGACTACAWATTGGGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 262 Combined Motif Reverse Complement Original Motif ACCCVYTHRMTWSHRYTTKHKGCAATGGCAGG CTCAGTGTTAATCTCCTGTC ACCCVYTHRMTWSHMTYWKTGKYAATSKCMKGTC Direction: Forward Position #: 15 Overlap #: 18 Alignment: ACCCVYTHRMTWSHRYTTKHKGCAATGGCAGG-- --------------CTCAGTGTTAATCTCCTGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 192 Combined Motif Reverse Complement Original Motif GACRRGYSATTMRCAYWKARHSWAYMHAKBGGGT GAATCCTGGGACAGCCTGT GACRRGYSATTMRCASAAWCCTRRBACAGCSKGT Direction: Forward Position #: 16 Overlap #: 19 Alignment: GACRRGYSATTMRCAYWKARHSWAYMHAKBGGGT ---------------GAATCCTGGGACAGCCTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 281 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 281 Motif 326 Reverse Complement Reverse Complement ATGATTCCATTT CCTTTGACTCCATGTC CWTGAYTCCATKTCCT Direction: Backward Position #: 2 Overlap #: 12 Alignment: ---ATGATTCCATTT- CCTTTGACTCCATGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 308 Original Motif Reverse Complement CWTGAYTCCATKTCCT GTTATTAATTGGCCTAATTT GTTATTAMTTGRCYYMATTTCCT Direction: Forward Position #: 8 Overlap #: 13 Alignment: -------CWTGAYTCCATKTCCT GTTATTAATTGGCCTAATTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 148 Combined Motif Reverse Complement Reverse Complement AGGAAATYMMGKCAARTAATAAC CTTCGCTGACTCTCTTT AGGAAATYMCKTCRMKKAMTMWCTTT Direction: Forward Position #: 10 Overlap #: 14 Alignment: AGGAAATYMMGKCAARTAATAAC--- ---------CTTCGCTGACTCTCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 14 Combined Motif Original Motif Original Motif AGGAAATYMCKTCRMKKAMTMWCTTT ACCTGGAAAATCGGGTCACT AGGAAATYMCKWCCTGGAAWATCKKKTCACT Direction: Forward Position #: 12 Overlap #: 15 Alignment: AGGAAATYMCKTCRMKKAMTMWCTTT----- -----------ACCTGGAAAATCGGGTCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 99 Combined Motif Original Motif Reverse Complement AGGAAATYMCKWCCTGGAAWATCKKKTCACT AATGAKATCATGTCYTTTGC AGGAAATYMCKWCMAKGADAWYMTGTYCWYTGC Direction: Forward Position #: 14 Overlap #: 18 Alignment: AGGAAATYMCKWCCTGGAAWATCKKKTCACT-- -------------AATGAKATCATGTCYTTTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 282 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 282 Motif 7 Original Motif Original Motif GTCTCTACTAAAA GTCTCWAMAAAAAAWAMAAA GTCTCTACWAAAAAWAMAAA Direction: Forward Position #: 1 Overlap #: 13 Alignment: GTCTCTACTAAAA------- GTCTCWAMAAAAAAWAMAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 294 Combined Motif Original Motif Original Motif GTCTCTACWAAAAAWAMAAA AGCTGTGAGAAGAGGGCCAC GTCTCTACARMWRWRARAARAGGGCCAC Direction: Forward Position #: 9 Overlap #: 12 Alignment: GTCTCTACWAAAAAWAMAAA-------- --------AGCTGTGAGAAGAGGGCCAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 227 Combined Motif Original Motif Reverse Complement GTCTCTACARMWRWRARAARAGGGCCAC ATTCAASATGAGATTTGGG GTCTCTACARMWATTMAARAWGRGMYWYGGG Direction: Forward Position #: 13 Overlap #: 16 Alignment: GTCTCTACARMWRWRARAARAGGGCCAC--- ------------ATTCAASATGAGATTTGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 232 Combined Motif Reverse Complement Reverse Complement CCCMWMYCKCWTKTTYAATWYKTGTAGAGAC AAGTCTCCCAATTACAACT CCCMWMYCKCWTKWWKTMTHCBWRTWRMRACT Direction: Forward Position #: 14 Overlap #: 18 Alignment: CCCMWMYCKCWTKTTYAATWYKTGTAGAGAC- -------------AAGTCTCCCAATTACAACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 224 Combined Motif Reverse Complement Original Motif AGTKYKWAKWBGDARAYWWRAWGRGMYWYGGG AATGAGTTAAGACTTTG AGTKYKWAKWBGDAAATKAGWTRAGACTTKGG Direction: Forward Position #: 15 Overlap #: 17 Alignment: AGTKYKWAKWBGDARAYWWRAWGRGMYWYGGG --------------AATGAGTTAAGACTTTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 283 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 283 Motif 277 Original Motif Original Motif GCCCTCACCATCC GCCCTCACCAGAAGC GCGCCCTCACCAKMM Direction: Backward Position #: 3 Overlap #: 13 Alignment: GCCCTCACCATCC-- GCCCTCACCAGAAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 26 Reverse Complement Reverse Complement RYYTGGTGAGGGCGC TMGGGAGGCTGAGGCAGGAG TMGGGAGBCTGRKGMRGGMGC Direction: Forward Position #: 7 Overlap #: 14 Alignment: ------RYYTGGTGAGGGCGC TMGGGAGGCTGAGGCAGGAG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 89 Combined Motif Reverse Complement Reverse Complement GCRCCMYCRKCAGBCTCCCRA TACACCCTCCGCAGCC GCRCCMYCDACASCCTCCSCAGCC Direction: Forward Position #: 9 Overlap #: 13 Alignment: GCRCCMYCRKCAGBCTCCCRA--- --------TACACCCTCCGCAGCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 72 Combined Motif Original Motif Original Motif GCRCCMYCDACASCCTCCSCAGCC CGCACTCCTCAGCC GCRCCMYCDACRCMCTCCTCAGCC Direction: Forward Position #: 11 Overlap #: 14 Alignment: GCRCCMYCDACASCCTCCSCAGCC ----------CGCACTCCTCAGCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 100 Combined Motif Reverse Complement Reverse Complement GGCTGAGGAGYGKGTDGMRGGMGC CGCGGCGCTTGCGGGCCAGC GGCTGAGGAGCGBGGHGCKKGCGSGCCAGC Direction: Forward Position #: 11 Overlap #: 14 Alignment: GGCTGAGGAGYGKGTDGMRGGMGC------ ----------CGCGGCGCTTGCGGGCCAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 284 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 284 Motif 122 Original Motif Original Motif CATTTGGGAGCCCATTGA CCTTGGCCAGCCCAGAAAG CMTTKGSSAGCCCAKWRAG Direction: Forward Position #: 1 Overlap #: 18 Alignment: CATTTGGGAGCCCATTGA- CCTTGGCCAGCCCAGAAAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 235 Reverse Complement Reverse Complement CTMWYTGGGCTSSCRAAYG GCCAATTTCTCCCATTTGGA GCCAATTTCTCHCWKKKSKRSCRAAYG Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------CTMWYTGGGCTSSCRAAYG GCCAATTTCTCCCATTTGGA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 311 Combined Motif Reverse Complement Reverse Complement CMTTKGSKRSYRYWGDGAGAAATTGGC TTGGTAGGATCCGTGATGCC CMTTKGSKRSYWTDGTRRGAWMYKKGMTGCC Direction: Forward Position #: 12 Overlap #: 16 Alignment: CMTTKGSKRSYRYWGDGAGAAATTGGC---- -----------TTGGTAGGATCCGTGATGCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 104 Combined Motif Reverse Complement Original Motif GGCAYCRYKRWTCMKACHAWKSKRSCRAAYG CAACATGGATGRARCTGGAG GGCAYCRYKRWTCCDACMWRGRTGVMRMWBGAG Direction: Forward Position #: 14 Overlap #: 18 Alignment: GGCAYCRYKRWTCMKACHAWKSKRSCRAAYG-- -------------CAACATGGATGRARCTGGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 306 Combined Motif Original Motif Original Motif GGCAYCRYKRWTCCDACMWRGRTGVMRMWBGAG GACATGAGCTGGCGCTTG GGCAYCRYKRWTCCGACATGRGYKGGVVYTKRG Direction: Forward Position #: 15 Overlap #: 18 Alignment: GGCAYCRYKRWTCCDACMWRGRTGVMRMWBGAG --------------GACATGAGCTGGCGCTTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 285 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 285 Motif 3 Original Motif Reverse Complement CACTGCACTCCAGC TCKMGCCACTGCACTCCAGC YMBYGCMMYYSMRCTCCAGC Direction: Forward Position #: 1 Overlap #: 14 Alignment: CACTGCACTCCAGC------ TCKMGCCACTGCACTCCAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 149 Combined Motif Original Motif Original Motif YMBYGCMMYYSMRCTCCAGC ACTCAGCCCRCCTGCACCC YMBYGCMMACTCASYCCASCTGCACCC Direction: Forward Position #: 9 Overlap #: 12 Alignment: YMBYGCMMYYSMRCTCCAGC------- --------ACTCAGCCCRCCTGCACCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 350 Combined Motif Original Motif Reverse Complement YMBYGCMMACTCASYCCASCTGCACCC TGCTGGAGGTCCACTCCAGA YMBYGCMMACTYRCTSSAGSTSCACYCCAGA Direction: Forward Position #: 12 Overlap #: 16 Alignment: YMBYGCMMACTCASYCCASCTGCACCC---- -----------TGCTGGAGGTCCACTCCAGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 105 Combined Motif Reverse Complement Original Motif TCTGGMGTGSASCTSSAGMMAGTYYGCMBYK GCCTCTCCCTCCACACCTCC TCTGGMGTGSASCKCCWSYCCSTCCRCACCTCC Direction: Forward Position #: 14 Overlap #: 18 Alignment: TCTGGMGTGSASCTSSAGMMAGTYYGCMBYK-- -------------GCCTCTCCCTCCACACCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 246 Combined Motif Reverse Complement Reverse Complement GGAGGTGKGGASGGMSWGGYGSTSCACYCCAGA TCAGGAGTGAAGCTGC GGAGGTGKGGASGGTSAGGMGKKAMRCTSCAGA Direction: Forward Position #: 15 Overlap #: 16 Alignment: GGAGGTGKGGASGGMSWGGYGSTSCACYCCAGA --------------TCAGGAGTGAAGCTGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 286 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 286 Motif 165 Reverse Complement Reverse Complement CTCCCAGCCGCCTG AGCTCMKCCTCCTGTCAGAT TCAGATMKCYCAGCCKCCTG Direction: Backward Position #: 7 Overlap #: 14 Alignment: CTCCCAGCCGCCTG------ AGCTCMKCCTCCTGTCAGAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 36 Combined Motif Original Motif Original Motif TCAGATMKCYCAGCCKCCTG ACATCCCAGACGATGGGCG TCAGATMKMCMWSCCRSMYGATGGGCG Direction: Forward Position #: 9 Overlap #: 12 Alignment: TCAGATMKCYCAGCCKCCTG------- --------ACATCCCAGACGATGGGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 309 Combined Motif Original Motif Reverse Complement TCAGATMKMCMWSCCRSMYGATGGGCG MTCCTCCAGACCCCAGAATG TCAGATMKMCMHYCCTCCWGAYSSSMGAATG Direction: Forward Position #: 12 Overlap #: 16 Alignment: TCAGATMKMCMWSCCRSMYGATGGGCG---- -----------MTCCTCCAGACCCCAGAATG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 125 Combined Motif Original Motif Original Motif TCAGATMKMCMHYCCTCCWGAYSSSMGAATG CGCCCGGCCAGCCGC TCAGATMKMCMHYCSYCCRGMCAGCCGMATG Direction: Forward Position #: 14 Overlap #: 15 Alignment: TCAGATMKMCMHYCCTCCWGAYSSSMGAATG -------------CGCCCGGCCAGCCGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 60 Combined Motif Original Motif Reverse Complement TCAGATMKMCMHYCSYCCRGMCAGCCGMATG CTCCTGACCTCGTGATC TCAGATMKMCMHYCBCCYGRCCWSSYGAWYG Direction: Forward Position #: 14 Overlap #: 17 Alignment: TCAGATMKMCMHYCSYCCRGMCAGCCGMATG -------------CTCCTGACCTCGTGATC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 287 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 287 Motif 308 Reverse Complement Reverse Complement CAMTTAGCATAATG GTTATTAATTGGCCTAATTT TYAMTTRGCMTAATKGTTAT Direction: Backward Position #: 2 Overlap #: 14 Alignment: -----CAMTTAGCATAATG- GTTATTAATTGGCCTAATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 70 Combined Motif Reverse Complement Reverse Complement ATAACRATTAYGCKAAYTMA GCAGCAMTATTCACAATAG ATAACRATKMHGCDAWWTHMACAATAG Direction: Forward Position #: 9 Overlap #: 12 Alignment: ATAACRATTAYGCKAAYTMA------- --------GCAGCAMTATTCACAATAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 58 Combined Motif Reverse Complement Original Motif CTATTGTYHAWWTDGCHYRATKGTTAT ATGGACAYTTRGGTTGHTTC CTATTGTYHAWATGGMCWHWTDGKTWKHTTC Direction: Forward Position #: 12 Overlap #: 16 Alignment: CTATTGTYHAWWTDGCHYRATKGTTAT---- -----------ATGGACAYTTRGGTTGHTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 45 Combined Motif Reverse Complement Original Motif GAAHYWARCHAWDWGRCCATWTHMACAATAG TGCCCAGTCTGGAAAGTG GAAHYWARCHAWDTGCCCAKTYTRRMAAKWG Direction: Forward Position #: 14 Overlap #: 18 Alignment: GAAHYWARCHAWDWGRCCATWTHMACAATAG -------------TGCCCAGTCTGGAAAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 280 Combined Motif Original Motif Original Motif GAAHYWARCHAWDTGCCCAKTYTRRMAAKWG CCTAGATTTCAGARGATGT GAAHYWARCHAWDYSYMSATTTYAGAARRTGT Direction: Forward Position #: 14 Overlap #: 18 Alignment: GAAHYWARCHAWDTGCCCAKTYTRRMAAKWG- -------------CCTAGATTTCAGARGATGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 288 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 288 Motif 169 Original Motif Original Motif CCCAAGTCCC CCCAAATCCTATAAAA ATAAAACCCAARTCCY Direction: Backward Position #: 7 Overlap #: 10 Alignment: CCCAAGTCCC------ CCCAAATCCTATAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 227 Original Motif Original Motif ATAAAACCCAARTCCY CCCAAATCTCATSTTGAAT CCCAAAWYWMAWCYYRAATCCY Direction: Forward Position #: 7 Overlap #: 13 Alignment: ------ATAAAACCCAARTCCY CCCAAATCTCATSTTGAAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 231 Original Motif Reverse Complement CCCAAAWYWMAWCYYRAATCCY MGAAGGGACTTGCCTTGT MSMMRRRACTHRCCTTGWATCCY Direction: Forward Position #: 2 Overlap #: 17 Alignment: -CCCAAAWYWMAWCYYRAATCCY MGAAGGGACTTGCCTTGT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 267 Combined Motif Original Motif Original Motif MSMMRRRACTHRCCTTGWATCCY ATGGACTTGAGA MSMMRRRACWTGSMYTKGAKMCY Direction: Forward Position #: 10 Overlap #: 12 Alignment: MSMMRRRACTHRCCTTGWATCCY ---------ATGGACTTGAGA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 164 Combined Motif Original Motif Reverse Complement MSMMRRRACWTGSMYTKGAKMCY GCGMGCGGGAACCGGGGCT MSMMRRRACDYGVSCKGGAACCBGGGCT Direction: Forward Position #: 10 Overlap #: 14 Alignment: MSMMRRRACWTGSMYTKGAKMCY----- ---------GCGMGCGGGAACCGGGGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 289 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 289 Motif 17 Original Motif Original Motif TGATGGGTGCACCAAA AGACAGTGGGYGCAGGHCA AGAYRRTGGGTGCASSAMA Direction: Forward Position #: 4 Overlap #: 16 Alignment: ---TGATGGGTGCACCAAA AGACAGTGGGYGCAGGHCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 106 Reverse Complement Original Motif TYTSSTGCACCCAMKMTCT ATTGGTGTATTTACAATCCC ATTGGTGTWTTTMYRMWCCCAMKMTCT Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------TYTSSTGCACCCAMKMTCT ATTGGTGTATTTACAATCCC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 249 Combined Motif Original Motif Original Motif ATTGGTGTWTTTMYRMWCCCAMKMTCT TGTGAAGAGACCACCAA ATTGGTGTWTTTGTGAASMSACYAYCWA Direction: Forward Position #: 12 Overlap #: 16 Alignment: ATTGGTGTWTTTMYRMWCCCAMKMTCT- -----------TGTGAAGAGACCACCAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 341 Combined Motif Original Motif Original Motif ATTGGTGTWTTTGTGAASMSACYAYCWA ATCCATCCATCCATCCA ATTGGTGTWTTTATSMABCCAYCMHYHMA Direction: Forward Position #: 13 Overlap #: 16 Alignment: ATTGGTGTWTTTGTGAASMSACYAYCWA- ------------ATCCATCCATCCATCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 311 Combined Motif Reverse Complement Original Motif TYDKHRGMTGGVTRSATAAAWACACCAAT GGCATCACGGATCCTACCAA TYDKHRGMTGGVKGCATMAMRRMWCCWAYCAA Direction: Forward Position #: 13 Overlap #: 17 Alignment: TYDKHRGMTGGVTRSATAAAWACACCAAT--- ------------GGCATCACGGATCCTACCAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 290 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 290 Motif 170 Original Motif Original Motif TGATACCCAGGCAAACAG AATCAACCCTGGYRATCAAT AWKMWACCCWGGCRAWCART Direction: Forward Position #: 2 Overlap #: 18 Alignment: -TGATACCCAGGCAAACAG- AATCAACCCTGGYRATCAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 67 Combined Motif Original Motif Original Motif AWKMWACCCWGGCRAWCART CTGGGCTCCTGAGTCTGGTG AWKMWACCCTGGSMWHCWGWGTCTGGTG Direction: Forward Position #: 9 Overlap #: 12 Alignment: AWKMWACCCWGGCRAWCART-------- --------CTGGGCTCCTGAGTCTGGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 112 Combined Motif Reverse Complement Reverse Complement CACCAGACWCWGDWRSCCAGGGTWYRWT CTTGCCCAAGGTCACACAGC CACCAGACWCWGVTDGCCMRRGKTCAHWCAGC Direction: Forward Position #: 13 Overlap #: 16 Alignment: CACCAGACWCWGDWRSCCAGGGTWYRWT---- ------------CTTGCCCAAGGTCACACAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 66 Combined Motif Reverse Complement Reverse Complement GCTGWDTGARCMMYGGCDAVCWGWGTCTGGTG TGTGTGTGTGTKTGTGTGT GCTGWDTGARCMMYKGYGWGYDKDKTYKKGTGT Direction: Forward Position #: 15 Overlap #: 18 Alignment: GCTGWDTGARCMMYGGCDAVCWGWGTCTGGTG- --------------TGTGTGTGTGTKTGTGTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 160 Combined Motif Original Motif Original Motif GCTGWDTGARCMMYKGYGWGYDKDKTYKKGTGT AAATTACCCAGTCTCAGGTA GCTGWDTGARCMMYARHTTRCBBAGTCTBRKGTA Direction: Forward Position #: 15 Overlap #: 19 Alignment: GCTGWDTGARCMMYKGYGWGYDKDKTYKKGTGT- --------------AAATTACCCAGTCTCAGGTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 291 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 291 Motif 63 Reverse Complement Reverse Complement TAMGACCTCAGGTCCTCAG AAAMAMMKMATGTTCTCACT TWAASACCTCAKGTYCTCAS Direction: Backward Position #: 2 Overlap #: 19 Alignment: TAMGACCTCAGGTCCTCAG- AAAMAMMKMATGTTCTCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 99 Combined Motif Original Motif Original Motif TWAASACCTCAKGTYCTCAS GCAAAKGACATGATYTCATT TWAASACCKCADRTBMYMWGATYTCATT Direction: Forward Position #: 9 Overlap #: 12 Alignment: TWAASACCTCAKGTYCTCAS-------- --------GCAAAKGACATGATYTCATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 67 Combined Motif Original Motif Original Motif TWAASACCKCADRTBMYMWGATYTCATT CTGGGCTCCTGAGTCTGGTG TWAASACCKCADVTGVKCTSMTSWSWYTGGTG Direction: Forward Position #: 13 Overlap #: 16 Alignment: TWAASACCKCADRTBMYMWGATYTCATT---- ------------CTGGGCTCCTGAGTCTGGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Reverse Complement Original Motif CACCAKWSWSARSAGYVCAVDTGYGGTSTTWA CTCCTGCCTCAGCCTCCCRA CACCAKWSWSARSASTCCWGBYKCRGYCTYHMRA Direction: Forward Position #: 15 Overlap #: 18 Alignment: CACCAKWSWSARSAGYVCAVDTGYGGTSTTWA-- --------------CTCCTGCCTCAGCCTCCCRA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 56 Combined Motif Original Motif Reverse Complement CACCAKWSWSARSASTCCWGBYKCRGYCTYHMRA GCCKGGMKCMGTGGCTCAKG CACCAKWSWSARSASKCCDGGYKCAGTSKCTCADG Direction: Forward Position #: 16 Overlap #: 19 Alignment: CACCAKWSWSARSASTCCWGBYKCRGYCTYHMRA- ---------------GCCKGGMKCMGTGGCTCAKG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 292 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 292 Motif 179 Reverse Complement Reverse Complement TTGTCCCACTGGAAGGTCTT GAATACCTCCTGAAGGACCT KWRTMCCWCYKGAAGGWCYT Direction: Forward Position #: 1 Overlap #: 20 Alignment: TTGTCCCACTGGAAGGTCTT GAATACCTCCTGAAGGACCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 119 Combined Motif Reverse Complement Reverse Complement AMGWCCTTCRKGWGGYAKWR KKCACCTTGATCTTGGACTT AMGWCCTTSRBRHSKTRDWMTTGGACTT Direction: Forward Position #: 9 Overlap #: 12 Alignment: AMGWCCTTCRKGWGGYAKWR-------- --------KKCACCTTGATCTTGGACTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 176 Combined Motif Original Motif Original Motif AMGWCCTTSRBRHSKTRDWMTTGGACTT AGGCCCCAGTGTSTGTTGTT AMGWCCTTSRBRAGKYVCYAKTGKRYKTTGTT Direction: Forward Position #: 13 Overlap #: 16 Alignment: AMGWCCTTSRBRHSKTRDWMTTGGACTT---- ------------AGGCCCCAGTGTSTGTTGTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 178 Combined Motif Original Motif Original Motif AMGWCCTTSRBRAGKYVCYAKTGKRYKTTGTT ACTGTCTTCCACCTCCACAT AMGWCCTTSRBRAGRCTSTCTTSYACBTYSWYAT Direction: Forward Position #: 15 Overlap #: 18 Alignment: AMGWCCTTSRBRAGKYVCYAKTGKRYKTTGTT-- --------------ACTGTCTTCCACCTCCACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 115 Combined Motif Reverse Complement Original Motif ATMWSMABGTKSAAGASAGKCTMBMSAAGGWCYT ATGATCCAGCAATYCCACTH ATMWSMABGTKSAAGAYRRTCYAGCVAWSSYMCTH Direction: Forward Position #: 16 Overlap #: 19 Alignment: ATMWSMABGTKSAAGASAGKCTMBMSAAGGWCYT- ---------------ATGATCCAGCAATYCCACTH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 293 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 293 Motif 262 Original Motif Original Motif CTGACTGGGAGACACCTCCC CTCAGTGTTAATCTCCTGTC CTSASTGKKARWCWCCTSYC Direction: Backward Position #: 1 Overlap #: 20 Alignment: CTGACTGGGAGACACCTCCC CTCAGTGTTAATCTCCTGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Original Motif Original Motif CTSASTGKKARWCWCCTSYC GAAAGGGAACTCCCTGACCC CTSASTGKGAAASGSMWCTCCCTGACCC Direction: Forward Position #: 9 Overlap #: 12 Alignment: CTSASTGKKARWCWCCTSYC-------- --------GAAAGGGAACTCCCTGACCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 312 Combined Motif Reverse Complement Reverse Complement GGGTCAGGGAGWYSCSTTTCRCASTSAG CCCMKGGCACCCTCAGTCCT GGGTCAGGGAGWCCCCKKKCACMCTCAGTCCT Direction: Forward Position #: 13 Overlap #: 16 Alignment: GGGTCAGGGAGWYSCSTTTCRCASTSAG---- ------------CCCMKGGCACCCTCAGTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 112 Combined Motif Reverse Complement Original Motif AGGACTGAGYGTGRYRGGGGWCTCCCTGACCC GCTGTGTGACCTTGGGCAAG AGGACTGAGYGTGRBVKGKGTSHCCYTGRSCMAG Direction: Forward Position #: 15 Overlap #: 18 Alignment: AGGACTGAGYGTGRYRGGGGWCTCCCTGACCC-- --------------GCTGTGTGACCTTGGGCAAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 65 Combined Motif Reverse Complement Original Motif CTRGSKCAKGGHSACRCRVBKCACMCTCAGTCCT AGAAATCGAGCRCAGCGCCG CTRGSKCAKGGHSACASAAVTCRMGCKCAGYSCYG Direction: Forward Position #: 16 Overlap #: 19 Alignment: CTRGSKCAKGGHSACRCRVBKCACMCTCAGTCCT- ---------------AGAAATCGAGCRCAGCGCCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 294 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 294 Motif 201 Original Motif Reverse Complement AGCTGTGAGAAGAGGGCCAC ACCKTCGCGGTGAGTGTTAC ASCTKYGMGRWGAGKGYYAC Direction: Forward Position #: 1 Overlap #: 20 Alignment: AGCTGTGAGAAGAGGGCCAC ACCKTCGCGGTGAGTGTTAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 145 Combined Motif Reverse Complement Reverse Complement GTMKCRCTCWMCYCMRAGST TYTGTCMTTTTGTGACTGGC GTMKCRCTYWHSYCMDWKBKTGACTGGC Direction: Forward Position #: 9 Overlap #: 12 Alignment: GTMKCRCTCWMCYCMRAGST-------- --------TYTGTCMTTTTGTGACTGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 165 Combined Motif Original Motif Reverse Complement GTMKCRCTYWHSYCMDWKBKTGACTGGC AGCTCMKCCTCCTGTCAGAT GTMKCRCTYWHSWSCTHVKBYKMCTGKCAGAT Direction: Forward Position #: 13 Overlap #: 16 Alignment: GTMKCRCTYWHSYCMDWKBKTGACTGGC---- ------------AGCTCMKCCTCCTGTCAGAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 105 Combined Motif Reverse Complement Reverse Complement ATCTGRCAGRRMBYVDAGSWSHWKAGKGYYAC GGAGGTGTGGAGGGAGAGGC ATCTGRCAGRRMBYGGAGGTGTRGAGGGHKASGC Direction: Forward Position #: 15 Overlap #: 18 Alignment: ATCTGRCAGRRMBYVDAGSWSHWKAGKGYYAC-- --------------GGAGGTGTGGAGGGAGAGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 179 Combined Motif Original Motif Original Motif ATCTGRCAGRRMBYGGAGGTGTRGAGGGHKASGC AGGTCCTTCAGGAGGTATTC ATCTGRCAGRRMBYGRRGKYSTTSAGGRDGWVKYC Direction: Forward Position #: 16 Overlap #: 19 Alignment: ATCTGRCAGRRMBYGGAGGTGTRGAGGGHKASGC- ---------------AGGTCCTTCAGGAGGTATTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 295 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 295 Motif 78 Original Motif Original Motif CCCCGCCCC CGAGCCCTGCCCCGCGG GCGGCCCYGCCCCCGAG Direction: Backward Position #: 5 Overlap #: 9 Alignment: ----CCCCGCCCC---- CGAGCCCTGCCCCGCGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 250 Combined Motif Reverse Complement Reverse Complement CTCGGGGGCMGGGCCGC GGAGCGGTGG CTCGGGGGMVSGGYSGC Direction: Forward Position #: 7 Overlap #: 10 Alignment: CTCGGGGGCMGGGCCGC ------GGAGCGGTGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 46 Combined Motif Reverse Complement Original Motif GCSKCCSVRCCCCCGAG CCCCWCCCCCA GCSKCCCCCCHCCCSMR Direction: Forward Position #: 7 Overlap #: 11 Alignment: GCSKCCSVRCCCCCGAG ------CCCCWCCCCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 92 Original Motif Original Motif GCSKCCCCCCHCCCSMR GGGGGCTGACCCCCCCACC GGGGGCTGMCSCCCCCMCCCCSMR Direction: Forward Position #: 8 Overlap #: 12 Alignment: -------GCSKCCCCCCHCCCSMR GGGGGCTGACCCCCCCACC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Reverse Complement Original Motif MYSGGGGRGGGGGSGYCAGCCCCC GAAAGGGAACTCCCTGACCC MYSGGGGRGGGRRRGBSARCYCCCTGACCC Direction: Forward Position #: 11 Overlap #: 14 Alignment: MYSGGGGRGGGGGSGYCAGCCCCC------ ----------GAAAGGGAACTCCCTGACCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 296 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 296 Motif 120 Original Motif Original Motif CCACGTGG CCATGTGSTCCC TCCCCCAYGTGG Direction: Backward Position #: 5 Overlap #: 8 Alignment: CCACGTGG---- CCATGTGSTCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 61 Reverse Complement Reverse Complement CCACKTGGGGGA TGGCTTCACCCAGTGGATCC TGGCTYCACSYRGKGGATCC Direction: Forward Position #: 6 Overlap #: 12 Alignment: -----CCACKTGGGGGA--- TGGCTTCACCCAGTGGATCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 98 Combined Motif Original Motif Reverse Complement TGGCTYCACSYRGKGGATCC CCCACGCCCACCCGGAACT TGGCTYCACCCASKSSMWCCCGGAACT Direction: Forward Position #: 9 Overlap #: 12 Alignment: TGGCTYCACSYRGKGGATCC------- --------CCCACGCCCACCCGGAACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 104 Combined Motif Original Motif Original Motif TGGCTYCACCCASKSSMWCCCGGAACT CAACATGGATGRARCTGGAG TGGCTYCACCCVRRCVHDSMYGGAACTGGAG Direction: Forward Position #: 12 Overlap #: 16 Alignment: TGGCTYCACCCASKSSMWCCCGGAACT---- -----------CAACATGGATGRARCTGGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 163 Combined Motif Reverse Complement Original Motif CTCCAGTTCCMYSHHVGKMBGGGTGMAGCCA CCTCCGTGGGCTCC CTCCAGTTCCMYSCCTSCGTGGGYKCMGCCA Direction: Forward Position #: 14 Overlap #: 14 Alignment: CTCCAGTTCCMYSHHVGKMBGGGTGMAGCCA -------------CCTCCGTGGGCTCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 297 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 297 Motif 261 Reverse Complement Reverse Complement TGCTGATTGGT TAGTGGTGATTTSTGAGAT TAGTGSTGATTKGTGAGAT Direction: Forward Position #: 4 Overlap #: 11 Alignment: ---TGCTGATTGGT----- TAGTGGTGATTTSTGAGAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 336 Original Motif Reverse Complement TAGTGSTGATTKGTGAGAT CAGGTGGTKTTTGGTTACAT CAGGTGGTTWKTGGTKAYWTGTGAGAT Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------TAGTGSTGATTKGTGAGAT CAGGTGGTKTTTGGTTACAT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 347 Combined Motif Original Motif Reverse Complement CAGGTGGTTWKTGGTKAYWTGTGAGAT GTGTGCGAATAGGTGT CAGGTGGTTWKKKGTKMBAWKWGRKRT Direction: Forward Position #: 12 Overlap #: 16 Alignment: CAGGTGGTTWKTGGTKAYWTGTGAGAT -----------GTGTGCGAATAGGTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 363 Combined Motif Reverse Complement Reverse Complement AKRKCWRWTBYYACRYRWAACCACCTG WACAATCAGACCTTG AKRKCWRWTBYHACAHDHARMCMYYKG Direction: Forward Position #: 12 Overlap #: 15 Alignment: AKRKCWRWTBYYACRYRWAACCACCTG -----------WACAATCAGACCTTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 35 Combined Motif Original Motif Original Motif AKRKCWRWTBYHACAHDHARMCMYYKG CAGAAATCACCCGTCTT AKRKCWRWTBYCASAAATMACCCBTYKT Direction: Forward Position #: 12 Overlap #: 16 Alignment: AKRKCWRWTBYHACAHDHARMCMYYKG- -----------CAGAAATCACCCGTCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 298 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 298 Motif 260 Reverse Complement Original Motif GGTCCTCCTCTAT GGTGCCCCTCTGGGACRAA SSTCYKSSWCKAWGGTGCC Direction: Backward Position #: 1 Overlap #: 13 Alignment: ------GGTCCTCCTCTAT GGTGCCCCTCTGGGACRAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 294 Original Motif Reverse Complement SSTCYKSSWCKAWGGTGCC GTGGCCCTCTTCTCACAGCT GTGGCCCTCTTCTBACASBWWGGTGCC Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------SSTCYKSSWCKAWGGTGCC GTGGCCCTCTTCTCACAGCT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 29 Combined Motif Original Motif Reverse Complement GTGGCCCTCTTCTBACASBWWGGTGCC MGTCTMKCTCTGTKGCCCAG GTGGCCCTCTTMKTMYAGCTHKGTGSCCCAG Direction: Forward Position #: 12 Overlap #: 16 Alignment: GTGGCCCTCTTCTBACASBWWGGTGCC---- -----------MGTCTMKCTCTGTKGCCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 253 Combined Motif Reverse Complement Reverse Complement CTGGGSCACYDAGCTMRAYRAAGAGGGCCAC ACAGAGTGAGACTCT CTGGGSCACYDAGMYAGAGKRAGASKSYCAC Direction: Forward Position #: 14 Overlap #: 15 Alignment: CTGGGSCACYDAGCTMRAYRAAGAGGGCCAC -------------ACAGAGTGAGACTCT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 108 Combined Motif Original Motif Original Motif CTGGGSCACYDAGMYAGAGKRAGASKSYCAC CGAGCCTCCCCGAYGAGCGC CTGGGSCACYDAGMBAGMCTVMSMGRSBMRCGC Direction: Forward Position #: 14 Overlap #: 18 Alignment: CTGGGSCACYDAGMYAGAGKRAGASKSYCAC-- -------------CGAGCCTCCCCGAYGAGCGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 299 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 299 Motif 26 Original Motif Original Motif CCCTGCTAGAACCTCCAA CTCCTGCCTCAGCCTCCCRA CYCCTGCYWSARCCTCCMAA Direction: Forward Position #: 2 Overlap #: 18 Alignment: -CCCTGCTAGAACCTCCAA- CTCCTGCCTCAGCCTCCCRA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 178 Combined Motif Original Motif Original Motif CYCCTGCYWSARCCTCCMAA ACTGTCTTCCACCTCCACAT CYCCTGCYACWGYCTYCCAMCTCCACAT Direction: Forward Position #: 9 Overlap #: 12 Alignment: CYCCTGCYWSARCCTCCMAA-------- --------ACTGTCTTCCACCTCCACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 84 Combined Motif Reverse Complement Original Motif ATGTGGAGYTGGMAGMCWGTMGCAGGMG CTGGGTCCCCCAGCAGTGCC ATGTGGAGYTGGCWGRSTSYCSCAGSAGTGCC Direction: Forward Position #: 13 Overlap #: 16 Alignment: ATGTGGAGYTGGMAGMCWGTMGCAGGMG---- ------------CTGGGTCCCCCAGCAGTGCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 350 Combined Motif Original Motif Reverse Complement ATGTGGAGYTGGCWGRSTSYCSCAGSAGTGCC TGCTGGAGGTCCACTCCAGA ATGTGGAGYTGGCWKGCTGSMGSWSCASTSCMGA Direction: Forward Position #: 15 Overlap #: 18 Alignment: ATGTGGAGYTGGCWGRSTSYCSCAGSAGTGCC-- --------------TGCTGGAGGTCCACTCCAGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 52 Combined Motif Original Motif Reverse Complement ATGTGGAGYTGGCWKGCTGSMGSWSCASTSCMGA GGTGGAGCTGCCTGCCAGTC ATGTGGAGYTGGCWKGSTGGAGCTGCMBKCCAGWC Direction: Forward Position #: 16 Overlap #: 19 Alignment: ATGTGGAGYTGGCWKGCTGSMGSWSCASTSCMGA- ---------------GGTGGAGCTGCCTGCCAGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 300 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 300 Motif 45 Original Motif Reverse Complement CATTTTACAGA CACTTTCCAGACTGGGCA CAKWYTRSRSACACTTTC Direction: Backward Position #: 1 Overlap #: 11 Alignment: -------CATTTTACAGA CACTTTCCAGACTGGGCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 233 Reverse Complement Original Motif GAAAGTGTSMSKAMWRTG GTTAACTGTAAAACAGCCT GTTAACTGWAARWSWGCCTAMWRTG Direction: Forward Position #: 8 Overlap #: 12 Alignment: -------GAAAGTGTSMSKAMWRTG GTTAACTGTAAAACAGCCT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 14 Combined Motif Original Motif Reverse Complement GTTAACTGWAARWSWGCCTAMWRTG AGTGACCCGATTTTCCAGGT GTTAACTGWAAGTGASCCKAHTDTSCAGGT Direction: Forward Position #: 11 Overlap #: 15 Alignment: GTTAACTGWAARWSWGCCTAMWRTG----- ----------AGTGACCCGATTTTCCAGGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 27 Combined Motif Original Motif Reverse Complement GTTAACTGWAAGTGASCCKAHTDTSCAGGT CGCCCCGTCTGGGAAGTG GTTAACTGWAAGTSDCCCSRTYTKGSARGTG Direction: Forward Position #: 14 Overlap #: 17 Alignment: GTTAACTGWAAGTGASCCKAHTDTSCAGGT- -------------CGCCCCGTCTGGGAAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 156 Combined Motif Original Motif Reverse Complement GTTAACTGWAAGTSDCCCSRTYTKGSARGTG GTCTGGGAAGTG GTTAACTGWAAGTSTCYSGGWHKTGSARGTG Direction: Forward Position #: 14 Overlap #: 12 Alignment: GTTAACTGWAAGTSDCCCSRTYTKGSARGTG -------------GTCTGGGAAGTG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 301 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 301 Motif 309 Original Motif Reverse Complement CCAAGACYCCAGAC MTCCTCCAGACCCCAGAATG TGYCMAGACYCCAGAMMTCC Direction: Backward Position #: 3 Overlap #: 14 Alignment: ----CCAAGACYCCAGAC-- MTCCTCCAGACCCCAGAATG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 280 Combined Motif Reverse Complement Reverse Complement GGAYYTCTGGKGTCTRGMCA ACATCMTCTGAAATCTAGG GGAYYTCTRSRKYCTVKVMAATCTAGG Direction: Forward Position #: 9 Overlap #: 12 Alignment: GGAYYTCTGGKGTCTRGMCA------- --------ACATCMTCTGAAATCTAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 234 Combined Motif Original Motif Reverse Complement GGAYYTCTRSRKYCTVKVMAATCTAGG GTGTCKGGAGTTTGTTCCTT GGAYYTCTRSRGTSTCKGVARTYTRKKCCTT Direction: Forward Position #: 12 Overlap #: 16 Alignment: GGAYYTCTRSRKYCTVKVMAATCTAGG---- -----------GTGTCKGGAGTTTGTTCCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 195 Combined Motif Original Motif Reverse Complement GGAYYTCTRSRGTSTCKGVARTYTRKKCCTT ACCCAATWTGTAGTCTTTTA GGAYYTCTRSRGTAYCBDAWDTGTAGTCYTTTA Direction: Forward Position #: 14 Overlap #: 18 Alignment: GGAYYTCTRSRGTSTCKGVARTYTRKKCCTT-- -------------ACCCAATWTGTAGTCTTTTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 56 Combined Motif Reverse Complement Original Motif TAAAMGACTACADWTDBGMTACKSMAGAMMTCC CRTGAGCCACYGYRCCYGGC TAAAMGACTACADWYDTGAGMCACHRSACMTSSC Direction: Forward Position #: 15 Overlap #: 19 Alignment: TAAAMGACTACADWTDBGMTACKSMAGAMMTCC- --------------CRTGAGCCACYGYRCCYGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 302 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 302 Motif 340 Original Motif Original Motif GACCCTGAGAGC GACCCAGAGAGC GACCCWGAGAGC Direction: Backward Position #: 1 Overlap #: 12 Alignment: GACCCTGAGAGC GACCCAGAGAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 362 Reverse Complement Reverse Complement GCTCTCWGGGTC GGACCTTCAGAGC GGACSYTCWSAGSGTC Direction: Forward Position #: 5 Overlap #: 9 Alignment: ----GCTCTCWGGGTC GGACCTTCAGAGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 323 Combined Motif Original Motif Original Motif GGACSYTCWSAGSGTC GCTCTCAGGTCCA GGACSYKCTCWSVGKYCCA Direction: Forward Position #: 7 Overlap #: 10 Alignment: GGACSYTCWSAGSGTC--- ------GCTCTCAGGTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 Combined Motif Original Motif Reverse Complement GGACSYKCTCWSVGKYCCA MCCYGGCWSMGASGSTCCT GGACSYKCYCTGGSTBCSASGSTCCT Direction: Forward Position #: 8 Overlap #: 12 Alignment: GGACSYKCTCWSVGKYCCA------- -------MCCYGGCWSMGASGSTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 17 Combined Motif Reverse Complement Original Motif AGGASCSTSGBASCCAGKGRKSGTCC AGACAGTGGGYGCAGGHCA AGGASCSTSGBAGMCAGTGGGCGYMSGHCA Direction: Forward Position #: 12 Overlap #: 15 Alignment: AGGASCSTSGBASCCAGKGRKSGTCC---- -----------AGACAGTGGGYGCAGGHCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 303 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 303 Motif 179 Reverse Complement Reverse Complement ACCATCTTTAAGAACT GAATACCTCCTGAAGGACCT GAATACCWYCTKWARGAMCT Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----ACCATCTTTAAGAACT GAATACCTCCTGAAGGACCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 190 Combined Motif Reverse Complement Reverse Complement AGRTCKTWRAGKWGGTATTC ATCATTCTTATGCCTTTG AGRTCKTWAWSDTKSTWWTSCCTTTG Direction: Forward Position #: 9 Overlap #: 12 Alignment: AGRTCKTWRAGKWGGTATTC------ --------ATCATTCTTATGCCTTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 202 Combined Motif Reverse Complement Original Motif CAAAGGSAWWASRADSWTWARGAMCT ACACATCACAAAGCAGTTTC CAAAGGSAWWAVVAYVTYAMARASCWGTTTC Direction: Forward Position #: 12 Overlap #: 15 Alignment: CAAAGGSAWWASRADSWTWARGAMCT----- -----------ACACATCACAAAGCAGTTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 21 Combined Motif Reverse Complement Reverse Complement GAAACWGSTMTYTKABKTVBTWWTSCCTTTG KACGGGCTTAARAAACGGC GAAACWGSTMTYTKAHGKGCTTAWVMMWYKGC Direction: Forward Position #: 14 Overlap #: 18 Alignment: GAAACWGSTMTYTKABKTVBTWWTSCCTTTG- -------------KACGGGCTTAARAAACGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 242 Combined Motif Original Motif Reverse Complement GAAACWGSTMTYTKAHGKGCTTAWVMMWYKGC CMCAGTTCACAATAGGGTT GAAACWGSTMTYTKMMSDGYTYACAAHABGGYT Direction: Forward Position #: 15 Overlap #: 18 Alignment: GAAACWGSTMTYTKAHGKGCTTAWVMMWYKGC- --------------CMCAGTTCACAATAGGGTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 304 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 304 Motif 139 Original Motif Reverse Complement AGTGTTTCCAAMCTGCT AWTKKTGGTTKCCAGKGGCT ARTGTTKSYWACCWGBKGCT Direction: Forward Position #: 1 Overlap #: 17 Alignment: AGTGTTTCCAAMCTGCT--- AWTKKTGGTTKCCAGKGGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 178 Combined Motif Reverse Complement Reverse Complement AGCRBCWGGTWKSRAACAMT ATGTGGAGGTGGAAGACAGT AGCRBCWGRTDTGGARSWVKAAGACAGT Direction: Forward Position #: 9 Overlap #: 12 Alignment: AGCRBCWGGTWKSRAACAMT-------- --------ATGTGGAGGTGGAAGACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 194 Combined Motif Reverse Complement Reverse Complement ACTGTCTTRVWSMTCCAHAKCWGBKGCT CAGCTACTCKTATACCCTTG ACTGTCTTRVWSCWSCWAMTCDKVTRCYCTTG Direction: Forward Position #: 13 Overlap #: 16 Alignment: ACTGTCTTRVWSMTCCAHAKCWGBKGCT---- ------------CAGCTACTCKTATACCCTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 262 Combined Motif Original Motif Original Motif ACTGTCTTRVWSCWSCWAMTCDKVTRCYCTTG CTCAGTGTTAATCTCCTGTC ACTGTCTTRVWSCWCYYAGTSTTAWTCTCYTGTC Direction: Forward Position #: 15 Overlap #: 18 Alignment: ACTGTCTTRVWSCWSCWAMTCDKVTRCYCTTG-- --------------CTCAGTGTTAATCTCCTGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 235 Combined Motif Original Motif Reverse Complement ACTGTCTTRVWSCWCYYAGTSTTAWTCTCYTGTC GCCAATTTCTCCCATTTGGA ACTGTCTTRVWSCWCKCMRWBTTMTHCYMTTKKSA Direction: Forward Position #: 16 Overlap #: 19 Alignment: ACTGTCTTRVWSCWCYYAGTSTTAWTCTCYTGTC- ---------------GCCAATTTCTCCCATTTGGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 305 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 305 Motif 332 Original Motif Reverse Complement AATGACCAATTGAGAGC GTTTAACCATTGAGGGCCAG CAGRWTKAMCMATTGAGRGC Direction: Backward Position #: 4 Overlap #: 17 Alignment: AATGACCAATTGAGAGC--- GTTTAACCATTGAGGGCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 170 Combined Motif Reverse Complement Reverse Complement GCKCTCAATYGYTRAWKCTG ATTGATMKCCAGGGTTGATT GCKCTCAAWTKBWDMDBCWGGGTTGATT Direction: Forward Position #: 9 Overlap #: 12 Alignment: GCKCTCAATYGYTRAWKCTG-------- --------ATTGATMKCCAGGGTTGATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 308 Combined Motif Reverse Complement Reverse Complement AATCAACCCWGBDYDWBYAWTTGAGRGC GTTATTAATTGGCCTAATTT AATCAACCCWGBGTTATTAATTGRSVKMATTT Direction: Forward Position #: 13 Overlap #: 16 Alignment: AATCAACCCWGBDYDWBYAWTTGAGRGC---- ------------GTTATTAATTGGCCTAATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 261 Combined Motif Original Motif Original Motif AATCAACCCWGBGTTATTAATTGRSVKMATTT ATCTCASAAATCACCACTA AATCAACCCWGBGTWWYTMABWRATCDCMWYTA Direction: Forward Position #: 15 Overlap #: 18 Alignment: AATCAACCCWGBGTTATTAATTGRSVKMATTT- --------------ATCTCASAAATCACCACTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 160 Combined Motif Reverse Complement Original Motif TAKWYGDGATMWVTRAKWWACBCWGGGTTGATT AAATTACCCAGTCTCAGGTA TAKWYGDGATMWVTAARTTACCCAGKSTYRRKTA Direction: Forward Position #: 15 Overlap #: 19 Alignment: TAKWYGDGATMWVTRAKWWACBCWGGGTTGATT- --------------AAATTACCCAGTCTCAGGTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 306 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 306 Motif 333 Reverse Complement Reverse Complement CAAGCGCCAGCTCATGTC AAAGCTGGAGCTATTATCTA MAAGCKSSAGCTMWTRTCTA Direction: Forward Position #: 1 Overlap #: 18 Alignment: CAAGCGCCAGCTCATGTC-- AAAGCTGGAGCTATTATCTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 262 Combined Motif Reverse Complement Reverse Complement TAGAMAWYAGCTSSRGCTTR GACAGGAGATTAACACTGAG TAGAMAWYRRCWGGAGMTTAACACTGAG Direction: Forward Position #: 9 Overlap #: 12 Alignment: TAGAMAWYAGCTSSRGCTTR-------- --------GACAGGAGATTAACACTGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 234 Combined Motif Original Motif Reverse Complement TAGAMAWYRRCWGGAGMTTAACACTGAG GTGTCKGGAGTTTGTTCCTT TAGAMAWYRRCWGKRKCTKRASWYTGWKCCTT Direction: Forward Position #: 13 Overlap #: 16 Alignment: TAGAMAWYRRCWGGAGMTTAACACTGAG---- ------------GTGTCKGGAGTTTGTTCCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 202 Combined Motif Original Motif Reverse Complement TAGAMAWYRRCWGKRKCTKRASWYTGWKCCTT GAAACTGCTTTGTGATGTGT TAGAMAWYRRCWGKGWMWYKRCTTTGTGMYKTGT Direction: Forward Position #: 15 Overlap #: 18 Alignment: TAGAMAWYRRCWGKRKCTKRASWYTGWKCCTT-- --------------GAAACTGCTTTGTGATGTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 284 Combined Motif Original Motif Reverse Complement TAGAMAWYRRCWGKGWMWYKRCTTTGTGMYKTGT TCAATGGGCTCCCAAATG TAGAMAWYRRCWGKGWCAHTGSKYTSYSAHDTGT Direction: Forward Position #: 16 Overlap #: 18 Alignment: TAGAMAWYRRCWGKGWMWYKRCTTTGTGMYKTGT ---------------TCAATGGGCTCCCAAATG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 307 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 307 Motif 48 Original Motif Original Motif AGATGCCAGCCAGAGCTCT AGCTCCCAGCGTGAGCGACG AGMTSCCAGCSWGAGCKMYG Direction: Forward Position #: 1 Overlap #: 19 Alignment: AGATGCCAGCCAGAGCTCT- AGCTCCCAGCGTGAGCGACG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 333 Combined Motif Reverse Complement Original Motif CMYRGCTCWSGCTGGSAYCT TAGATAATAGCTCCAGCTTT CMYRGCTCTAGMTRRTABCTCCAGCTTT Direction: Forward Position #: 9 Overlap #: 12 Alignment: CMYRGCTCWSGCTGGSAYCT-------- --------TAGATAATAGCTCCAGCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 310 Combined Motif Reverse Complement Reverse Complement AAAGCTGGAGBTAKMARCTAGAGCKMYG GGATTTMKGACTTGCATGGG AAAGCTGGAGBTGGMWKYHDGASYTVCRTGGG Direction: Forward Position #: 13 Overlap #: 16 Alignment: AAAGCTGGAGBTAKMARCTAGAGCKMYG---- ------------GGATTTMKGACTTGCATGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 115 Combined Motif Original Motif Reverse Complement AAAGCTGGAGBTGGMWKYHDGASYTVCRTGGG HAGTGGKATTGCTGGATCAT AAAGCTGGAGBTGGHAKTBGGABTKCYGKRKSAT Direction: Forward Position #: 15 Overlap #: 18 Alignment: AAAGCTGGAGBTGGMWKYHDGASYTVCRTGGG-- --------------HAGTGGKATTGCTGGATCAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 36 Combined Motif Original Motif Reverse Complement AAAGCTGGAGBTGGHAKTBGGABTKCYGKRKSAT CGCCCATCGTCTGGGATGT AAAGCTGGAGBTGGHMGYCSRWCKTCTGGGWBRT Direction: Forward Position #: 16 Overlap #: 19 Alignment: AAAGCTGGAGBTGGHAKTBGGABTKCYGKRKSAT ---------------CGCCCATCGTCTGGGATGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 308 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 308 Motif 83 Reverse Complement Reverse Complement GTTATTAATTGGCCTAATTT GTKTMTATMTACCACATTTT GTTWWTAWHTRSCMYAWTTT Direction: Backward Position #: 1 Overlap #: 20 Alignment: GTTATTAATTGGCCTAATTT GTKTMTATMTACCACATTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 58 Combined Motif Reverse Complement Reverse Complement AAAWTMYGSMAHWTAWWAAC GAAHCAACCKAAKTGTCCAT AAAWTMYGGAAHHWAMHDAMKTGTCCAT Direction: Forward Position #: 9 Overlap #: 12 Alignment: AAAWTMYGSMAHWTAWWAAC-------- --------GAAHCAACCKAAKTGTCCAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 160 Combined Motif Original Motif Original Motif AAAWTMYGGAAHHWAMHDAMKTGTCCAT AAATTACCCAGTCTCAGGTA AAAWTMYGGAAHAAAYTAMCBWGTCYMWGGTA Direction: Forward Position #: 13 Overlap #: 16 Alignment: AAAWTMYGGAAHHWAMHDAMKTGTCCAT---- ------------AAATTACCCAGTCTCAGGTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 357 Combined Motif Reverse Complement Reverse Complement TACCWYMGACWBGYTAMTTTHTTCCMYAWTTT TAATTTTATGTGTCAACTTG TACCWYMGACWBGYTAATTTTWTSYVTMAWYTTG Direction: Forward Position #: 15 Overlap #: 18 Alignment: TACCWYMGACWBGYTAMTTTHTTCCMYAWTTT-- --------------TAATTTTATGTGTCAACTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 137 Combined Motif Original Motif Original Motif TACCWYMGACWBGYTAATTTTWTSYVTMAWYTTG AGGTTTGTTACATAGGTAWA TACCWYMGACWBGYTARKTTTDTTWCWHADBTWKA Direction: Forward Position #: 16 Overlap #: 19 Alignment: TACCWYMGACWBGYTAATTTTWTSYVTMAWYTTG- ---------------AGGTTTGTTACATAGGTAWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 309 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 309 Motif 139 Reverse Complement Original Motif MTCCTCCAGACCCCAGAATG AGCCYCTGGYAACCAYYAWT AKCCTCYRGMMMCCASMATK Direction: Backward Position #: 1 Overlap #: 20 Alignment: MTCCTCCAGACCCCAGAATG AGCCYCTGGYAACCAYYAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 115 Combined Motif Reverse Complement Reverse Complement RATYSTGGYYYCKKGAGGRT HAGTGGKATTGCTGGATCAT RATYSTGGYWBYKGGAKKGYTGGATCAT Direction: Forward Position #: 9 Overlap #: 12 Alignment: RATYSTGGYYYCKKGAGGRT-------- --------HAGTGGKATTGCTGGATCAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 234 Combined Motif Original Motif Reverse Complement RATYSTGGYWBYKGGAKKGYTGGATCAT GTGTCKGGAGTTTGTTCCTT RATYSTGGYWBYGKGWBKGSWGKWTSWTCCTT Direction: Forward Position #: 13 Overlap #: 16 Alignment: RATYSTGGYWBYKGGAKKGYTGGATCAT---- ------------GTGTCKGGAGTTTGTTCCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 119 Combined Motif Reverse Complement Original Motif AAGGAWSAWRCWSCRBWCRCKBWMCCASMATK AAGTCCAAGATCAAGGTGYY AAGGAWSAWRCWSCADDYVCDADAYCAVVRTKYY Direction: Forward Position #: 15 Overlap #: 18 Alignment: AAGGAWSAWRCWSCRBWCRCKBWMCCASMATK-- --------------AAGTCCAAGATCAAGGTGYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 202 Combined Motif Original Motif Reverse Complement AAGGAWSAWRCWSCADDYVCDADAYCAVVRTKYY GAAACTGCTTTGTGATGTGT AAGGAWSAWRCWSCAGAWACTRCWTYRTGATGTST Direction: Forward Position #: 16 Overlap #: 19 Alignment: AAGGAWSAWRCWSCADDYVCDADAYCAVVRTKYY- ---------------GAAACTGCTTTGTGATGTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 310 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 310 Motif 144 Original Motif Original Motif CCCATGCAAGTCYRAAATCC CCGCTGCACTGTGGGAGCCC CCSMTGCAMKKYBGRARYCC Direction: Backward Position #: 1 Overlap #: 20 Alignment: CCCATGCAAGTCYRAAATCC CCGCTGCACTGTGGGAGCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Original Motif Original Motif CCSMTGCAMKKYBGRARYCC GAAAGGGAACTCCCTGACCC CCSMTGCAVDAWGGGAAYYCCCTGACCC Direction: Forward Position #: 9 Overlap #: 12 Alignment: CCSMTGCAMKKYBGRARYCC-------- --------GAAAGGGAACTCCCTGACCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 312 Combined Motif Reverse Complement Reverse Complement GGGTCAGGGMKTTCCCWTDVTGCAYSGG CCCMKGGCACCCTCAGTCCT GGGTCAGGGMKTYCCCDKGCWSCMTCRGTCCT Direction: Forward Position #: 13 Overlap #: 16 Alignment: GGGTCAGGGMKTTCCCWTDVTGCAYSGG---- ------------CCCMKGGCACCCTCAGTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 137 Combined Motif Reverse Complement Original Motif AGGACKGARGSWGCYDGGGMAYYCCCTGACCC AGGTTTGTTACATAGGTAWA AGGACKGARGSWGCMGGKKHRTTMCMTRRSYMWA Direction: Forward Position #: 15 Overlap #: 18 Alignment: AGGACKGARGSWGCYDGGGMAYYCCCTGACCC-- --------------AGGTTTGTTACATAGGTAWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 56 Combined Motif Reverse Complement Reverse Complement TWRKSKMARGYAAMHRRCCYGCWSCMTCRGTCCT GCCKGGMKCMGTGGCTCAKG TWRKSKMARGYAAMHGVCBKGCDCCVTSGSTCMTG Direction: Forward Position #: 16 Overlap #: 19 Alignment: TWRKSKMARGYAAMHRRCCYGCWSCMTCRGTCCT- ---------------GCCKGGMKCMGTGGCTCAKG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 311 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 311 Motif 26 Original Motif Original Motif GGCATCACGGATCCTACCAA CTCCTGCCTCAGCCTCCCRA SKCMTSMCKSAKCCTMCCRA Direction: Forward Position #: 1 Overlap #: 20 Alignment: GGCATCACGGATCCTACCAA CTCCTGCCTCAGCCTCCCRA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 61 Combined Motif Original Motif Original Motif SKCMTSMCKSAKCCTMCCRA GGATCCACTGGGTGAAGCCA SKCMTSMCGGATCCWCYVGRTGAAGCCA Direction: Forward Position #: 9 Overlap #: 12 Alignment: SKCMTSMCKSAKCCTMCCRA-------- --------GGATCCACTGGGTGAAGCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 76 Combined Motif Original Motif Reverse Complement SKCMTSMCGGATCCWCYVGRTGAAGCCA CMTAGYACAGTGCCTGGCAC SKCMTSMCGGATCCTMBBRVWGWRSCYRGCAC Direction: Forward Position #: 13 Overlap #: 16 Alignment: SKCMTSMCGGATCCWCYVGRTGAAGCCA---- ------------CMTAGYACAGTGCCTGGCAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 106 Combined Motif Reverse Complement Original Motif GTGCKKGSKWCWVKBBYAGGATCCGYSAYGYS ATTGGTGTATTTACAATCCC GTGCKKGSKWCWVKRTTRGKRTMYKTAMHRTCCC Direction: Forward Position #: 15 Overlap #: 18 Alignment: GTGCKKGSKWCWVKBBYAGGATCCGYSAYGYS-- --------------ATTGGTGTATTTACAATCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 84 Combined Motif Original Motif Original Motif GTGCKKGSKWCWVKRTTRGKRTMYKTAMHRTCCC CTGGGTCCCCCAGCAGTGCC GTGCKKGSKWCWVKRYTGGGKYCCYYASCAKYSCC Direction: Forward Position #: 16 Overlap #: 19 Alignment: GTGCKKGSKWCWVKRTTRGKRTMYKTAMHRTCCC- ---------------CTGGGTCCCCCAGCAGTGCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 312 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 312 Motif 48 Reverse Complement Reverse Complement CCCMKGGCACCCTCAGTCCT CGTCGCTCACGCTGGGAGCT CSYCGSKCACSCTSRGWSCT Direction: Backward Position #: 1 Overlap #: 20 Alignment: CCCMKGGCACCCTCAGTCCT CGTCGCTCACGCTGGGAGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 176 Combined Motif Original Motif Original Motif CSYCGSKCACSCTSRGWSCT AGGCCCCAGTGTSTGTTGTT CSYCGSKCASGCYCVRDBSTSTGTTGTT Direction: Forward Position #: 9 Overlap #: 12 Alignment: CSYCGSKCACSCTSRGWSCT-------- --------AGGCCCCAGTGTSTGTTGTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 84 Combined Motif Reverse Complement Original Motif AACAACASASVHMVGMGCSTGRSCGMSG CTGGGTCCCCCAGCAGTGCC AACAACASASVHCTGRGTCYSVCMGCAGTGCC Direction: Forward Position #: 13 Overlap #: 16 Alignment: AACAACASASVHMVGMGCSTGRSCGMSG---- ------------CTGGGTCCCCCAGCAGTGCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 310 Combined Motif Original Motif Reverse Complement AACAACASASVHCTGRGTCYSVCMGCAGTGCC GGATTTMKGACTTGCATGGG AACAACASASVHCTGGRTYTCBSASYTGYRYSGG Direction: Forward Position #: 15 Overlap #: 18 Alignment: AACAACASASVHCTGRGTCYSVCMGCAGTGCC-- --------------GGATTTMKGACTTGCATGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Reverse Complement Reverse Complement CCSMMMCAMSTSBGAMAMCCAGDBSTSTGTTGTT GGGTCAGGGAGTTCCCTTTC CCSMMMCAMSTSBGAGRGYCAGGGAKKTSYYKTTC Direction: Forward Position #: 16 Overlap #: 19 Alignment: CCSMMMCAMSTSBGAMAMCCAGDBSTSTGTTGTT- ---------------GGGTCAGGGAGTTCCCTTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 313 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 313 Motif 26 Original Motif Original Motif CTCCTGCCTCAGCY CTCCTGCCTCAGCCTCCCRA CTCCTGCCTCAGCYTCCCRA Direction: Forward Position #: 1 Overlap #: 14 Alignment: CTCCTGCCTCAGCY------ CTCCTGCCTCAGCCTCCCRA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 96 Combined Motif Reverse Complement Original Motif TMGGGAKGCTGAGGCAGGAG AAGCTGAGGGAGCCGGCTCC TMGGGAKGMWGMKGMRGGAGCCGGCTCC Direction: Forward Position #: 9 Overlap #: 12 Alignment: TMGGGAKGCTGAGGCAGGAG-------- --------AAGCTGAGGGAGCCGGCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 105 Combined Motif Reverse Complement Original Motif GGAGCCGGCTCCMYCYRCWYCYTCCCRA GCCTCTCCCTCCACACCTCC GGAGCCGGCTCCVCCTVYHCCTYCMCAMCTCC Direction: Forward Position #: 13 Overlap #: 16 Alignment: GGAGCCGGCTCCMYCYRCWYCYTCCCRA---- ------------GCCTCTCCCTCCACACCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 67 Combined Motif Original Motif Reverse Complement GGAGCCGGCTCCVCCTVYHCCTYCMCAMCTCC CACCAGACTCAGGAGCCCAG GGAGCCGGCTCCVCCWCCASMYTCASRASYCCAG Direction: Forward Position #: 15 Overlap #: 18 Alignment: GGAGCCGGCTCCVCCTVYHCCTYCMCAMCTCC-- --------------CACCAGACTCAGGAGCCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 72 Combined Motif Reverse Complement Reverse Complement CTGGMSTMSTGAKYSTGGWGGVGGAGCCGGCTCC GGCTGAGGAGTGCG CTGGMSTMSTGAKYSKGSTGRGGRRKSCGGCTCC Direction: Forward Position #: 16 Overlap #: 14 Alignment: CTGGMSTMSTGAKYSTGGWGGVGGAGCCGGCTCC ---------------GGCTGAGGAGTGCG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 314 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 314 Motif 240 Reverse Complement Original Motif ATGTGCGTTCC ATGTGCWGTCCC AWKKKSYGTYCC Direction: Forward Position #: 2 Overlap #: 11 Alignment: -ATGTGCGTTCC ATGTGCWGTCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 312 Reverse Complement Reverse Complement GGKACKSYRYWT CCCMKGGCACCCTCAGTCCT CCCMKGGSACSCTVMDTCCT Direction: Forward Position #: 6 Overlap #: 12 Alignment: -----GGKACKSYRYWT--- CCCMKGGCACCCTCAGTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 144 Combined Motif Reverse Complement Reverse Complement AGGAHYVAGSGTSCCYRGGG GGGCTCCCACAGTGCAGCGG AGGAHYVAGGGYTCCCASRGTGCAGCGG Direction: Forward Position #: 9 Overlap #: 12 Alignment: AGGAHYVAGSGTSCCYRGGG-------- --------GGGCTCCCACAGTGCAGCGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Combined Motif Original Motif Reverse Complement AGGAHYVAGGGYTCCCASRGTGCAGCGG TCACKMGGGAAGCGCAAG AGGAHYVAGGGYTCMCDCGGKRMRSSSRAG Direction: Forward Position #: 13 Overlap #: 16 Alignment: AGGAHYVAGGGYTCCCASRGTGCAGCGG-- ------------TCACKMGGGAAGCGCAAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 18 Combined Motif Reverse Complement Reverse Complement CTMSSSKYKRCCGHGYGAMCCCTVMDTCCT CCCYAATACTGCGCTTTTC CTMSSSKYKRCCGCSCGAAYMCTGMGYYYTTC Direction: Forward Position #: 14 Overlap #: 17 Alignment: CTMSSSKYKRCCGHGYGAMCCCTVMDTCCT-- -------------CCCYAATACTGCGCTTTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 315 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 315 Motif 169 Reverse Complement Reverse Complement TGATATGGTTTGG TTTTATAGGATTTGGG TTTKATAKGRTTTGGG Direction: Forward Position #: 3 Overlap #: 13 Alignment: --TGATATGGTTTGG- TTTTATAGGATTTGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 227 Original Motif Original Motif TTTKATAKGRTTTGGG CCCAAATCTCATSTTGAAT CCCAAATYTYATMTKGWWTGGG Direction: Forward Position #: 7 Overlap #: 13 Alignment: ------TTTKATAKGRTTTGGG CCCAAATCTCATSTTGAAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 331 Combined Motif Reverse Complement Reverse Complement CCCAWWCYAYATKAKATTTGGG GCCTCCTTGAGCTGTGGTGG CCCAWWCYAGMYTMSWTKWGSKGTGGTGG Direction: Forward Position #: 10 Overlap #: 13 Alignment: CCCAWWCYAYATKAKATTTGGG------- ---------GCCTCCTTGAGCTGTGGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 190 Combined Motif Original Motif Original Motif CCCAWWCYAGMYTMSWTKWGSKGTGGTGG CAAAGGCATAAGAATGAT CCCAWWCYAGMYYAVAKGHRBWRKRRTGRT Direction: Forward Position #: 13 Overlap #: 17 Alignment: CCCAWWCYAGMYTMSWTKWGSKGTGGTGG- ------------CAAAGGCATAAGAATGAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 259 Combined Motif Reverse Complement Reverse Complement AMCAMKYMWVMDCRTBTKMRCTKGWWTGGG TAATAAGGGTGTGGG AMCAMKYMWVMDCTWATRAGSKTGTGKGGG Direction: Forward Position #: 14 Overlap #: 15 Alignment: AMCAMKYMWVMDCRTBTKMRCTKGWWTGGG -------------TAATAAGGGTGTGGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 316 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 316 Motif 136 Original Motif Reverse Complement CGGAAGTGACGT CCCCGGGCAGTGAGGG CSSMRGKSASKKAGGG Direction: Forward Position #: 1 Overlap #: 12 Alignment: CGGAAGTGACGT---- CCCCGGGCAGTGAGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 247 Combined Motif Reverse Complement Original Motif CCCTYYSTSYCKYSSG GCCTCACTGCCRC CCCTYYGYCTCACKGSCRC Direction: Forward Position #: 7 Overlap #: 10 Alignment: CCCTYYSTSYCKYSSG--- ------GCCTCACTGCCRC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 246 Combined Motif Reverse Complement Reverse Complement GKGSCRGTGAGKCKKAGGG TCAGGAGTGAAGCTGC GKGSCRGTSAGGMGTRRRGCTGC Direction: Forward Position #: 8 Overlap #: 12 Alignment: GKGSCRGTGAGKCKKAGGG---- -------TCAGGAGTGAAGCTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 30 Combined Motif Original Motif Original Motif GKGSCRGTSAGGMGTRRRGCTGC AGGAGCGCCTCTKCCCGGC GKGSCRGTSAGGAGYGMCKCTGCCCGGC Direction: Forward Position #: 10 Overlap #: 14 Alignment: GKGSCRGTSAGGMGTRRRGCTGC----- ---------AGGAGCGCCTCTKCCCGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 327 Combined Motif Original Motif Reverse Complement GKGSCRGTSAGGAGYGMCKCTGCCCGGC GAAATTGACTTCCTCCT GKGSCRGTSAGGRRHRHBGMYKYCCKSCT Direction: Forward Position #: 13 Overlap #: 16 Alignment: GKGSCRGTSAGGAGYGMCKCTGCCCGGC- ------------GAAATTGACTTCCTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 317 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 317 Motif 299 Reverse Complement Reverse Complement ATGTTGTAGCATGT TTGGAGGTTCTAGCAGGG TTGGAKGTTSTAGCAKGK Direction: Forward Position #: 5 Overlap #: 14 Alignment: ----ATGTTGTAGCATGT TTGGAGGTTCTAGCAGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 36 Reverse Complement Original Motif RCYTGCTASAACRTCCAA ACATCCCAGACGATGGGCG ACATCCCASMYGMTRGRMSRTCCAA Direction: Forward Position #: 8 Overlap #: 12 Alignment: -------RCYTGCTASAACRTCCAA ACATCCCAGACGATGGGCG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 280 Combined Motif Reverse Complement Reverse Complement TTGGAKSYMCMAYCMYSTGGGATGT ACATCMTCTGAAATCTAGG TTGGAKSYMCAMWYCHYYKGRAWKYTAGG Direction: Forward Position #: 11 Overlap #: 15 Alignment: TTGGAKSYMCMAYCMYSTGGGATGT---- ----------ACATCMTCTGAAATCTAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 195 Combined Motif Original Motif Reverse Complement TTGGAKSYMCAMWYCHYYKGRAWKYTAGG ACCCAATWTGTAGTCTTTTA TTGGAKSYMCAMACCCHHTDDRTDKTMKKTTA Direction: Forward Position #: 13 Overlap #: 17 Alignment: TTGGAKSYMCAMWYCHYYKGRAWKYTAGG--- ------------ACCCAATWTGTAGTCTTTTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 284 Combined Motif Original Motif Original Motif TTGGAKSYMCAMACCCHHTDDRTDKTMKKTTA CATTTGGGAGCCCATTGA TTGGAKSYMCAMACCMTHTGKRWRCYCWTTKA Direction: Forward Position #: 15 Overlap #: 18 Alignment: TTGGAKSYMCAMACCCHHTDDRTDKTMKKTTA --------------CATTTGGGAGCCCATTGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 318 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 318 Motif 88 Reverse Complement Original Motif CGGGGCTG ACCGGGGCTGCA CACGGGGCTGAC Direction: Backward Position #: 3 Overlap #: 8 Alignment: --CGGGGCTG-- ACCGGGGCTGCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 183 Original Motif Reverse Complement CACGGGGCTGAC GGCCMGCAGGGCKGGC GGCCMSMMGGGSYKGMC Direction: Forward Position #: 6 Overlap #: 11 Alignment: -----CACGGGGCTGAC GGCCMGCAGGGCKGGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 78 Combined Motif Original Motif Original Motif GGCCMSMMGGGSYKGMC CGAGCCCTGCCCCGCGG GGCCMSCVRGSCCTGCCCCGCGG Direction: Forward Position #: 7 Overlap #: 11 Alignment: GGCCMSMMGGGSYKGMC------ ------CGAGCCCTGCCCCGCGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 92 Combined Motif Reverse Complement Original Motif CCGCGGGGCAGGSCKVGSYGGCC GGGGGCTGACCCCCCCACC CCGCGGGGCRGGGSYTGVCSSCCCCACC Direction: Forward Position #: 10 Overlap #: 14 Alignment: CCGCGGGGCAGGSCKVGSYGGCC----- ---------GGGGGCTGACCCCCCCACC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 122 Combined Motif Original Motif Original Motif CCGCGGGGCRGGGSYTGVCSSCCCCACC CCTTGGCCAGCCCAGAAAG CCGCGGGGCRGGSCTTGGCCMSCCCASMAAG Direction: Forward Position #: 13 Overlap #: 16 Alignment: CCGCGGGGCRGGGSYTGVCSSCCCCACC--- ------------CCTTGGCCAGCCCAGAAAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 319 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 319 Motif 154 Original Motif Original Motif TAGTTTTTAACAA CATTAGATTCTCATAGGA CATTAGWTTYTMAYARGA Direction: Forward Position #: 4 Overlap #: 13 Alignment: ---TAGTTTTTAACAA-- CATTAGATTCTCATAGGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 243 Combined Motif Original Motif Reverse Complement CATTAGWTTYTMAYARGA TTGAGAACCACTG CATTAGWTTSWVAMMMRMTG Direction: Forward Position #: 8 Overlap #: 11 Alignment: CATTAGWTTYTMAYARGA-- -------TTGAGAACCACTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 299 Combined Motif Original Motif Reverse Complement CATTAGWTTSWVAMMMRMTG TTGGAGGTTCTAGCAGGG CATTAGWTTTDGADVHDCTRGCAGGG Direction: Forward Position #: 9 Overlap #: 12 Alignment: CATTAGWTTSWVAMMMRMTG------ --------TTGGAGGTTCTAGCAGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 137 Combined Motif Reverse Complement Reverse Complement CCCTGCMAGDHVHTCHAAAWCTAATG TWTACCTATGTAACAAACCT CCCTGCMAGDHTHTMCMWATSTAAYRAACCT Direction: Forward Position #: 12 Overlap #: 15 Alignment: CCCTGCMAGDHVHTCHAAAWCTAATG----- -----------TWTACCTATGTAACAAACCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 333 Combined Motif Original Motif Original Motif CCCTGCMAGDHTHTMCMWATSTAAYRAACCT TAGATAATAGCTCCAGCTTT CCCTGCMAGDHTHTASATAWTWRMTCMASCTTT Direction: Forward Position #: 14 Overlap #: 18 Alignment: CCCTGCMAGDHTHTMCMWATSTAAYRAACCT-- -------------TAGATAATAGCTCCAGCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 320 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 320 Motif 205 Original Motif Original Motif CATCTGGAGCCCCA CATCTGGCAGCCCA CATCTGGMRSCCCA Direction: Backward Position #: 1 Overlap #: 14 Alignment: CATCTGGAGCCCCA CATCTGGCAGCCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 284 Reverse Complement Original Motif TGGGSMRCCAGATG CATTTGGGAGCCCATTGA CATTTGKGRGCCSMYWGATG Direction: Forward Position #: 7 Overlap #: 12 Alignment: ------TGGGSMRCCAGATG CATTTGGGAGCCCATTGA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 67 Combined Motif Original Motif Reverse Complement CATTTGKGRGCCSMYWGATG CACCAGACTCAGGAGCCCAG CATTTGKGMRCCAVAHKMWGGAGCCCAG Direction: Forward Position #: 9 Overlap #: 12 Alignment: CATTTGKGRGCCSMYWGATG-------- --------CACCAGACTCAGGAGCCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 68 Combined Motif Original Motif Original Motif CATTTGKGMRCCAVAHKMWGGAGCCCAG CATGGCGGGCTGCAGGTC CATTTGKGMRCCMATGGCDGGMKSCMRGTC Direction: Forward Position #: 13 Overlap #: 16 Alignment: CATTTGKGMRCCAVAHKMWGGAGCCCAG-- ------------CATGGCGGGCTGCAGGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 84 Combined Motif Original Motif Reverse Complement CATTTGKGMRCCMATGGCDGGMKSCMRGTC GGCACTGCTGGGGGACCCAG CATTTGKGMRCCMRKCRCTGSHGGSVGRYCCAG Direction: Forward Position #: 14 Overlap #: 17 Alignment: CATTTGKGMRCCMATGGCDGGMKSCMRGTC--- -------------GGCACTGCTGGGGGACCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 321 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 321 Motif 201 Original Motif Reverse Complement AAGCTCGAACTGGGTGGAGC ACCKTCGCGGTGAGTGTTAC AMSYTCGMRSTGRGTGKWRC Direction: Forward Position #: 1 Overlap #: 20 Alignment: AAGCTCGAACTGGGTGGAGC ACCKTCGCGGTGAGTGTTAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 160 Combined Motif Reverse Complement Reverse Complement GKWRCACKCASKYCGAKSYT TACCTGAGACTGGGTAATTT GKWRCACKYACBTSRRDCTKGGTAATTT Direction: Forward Position #: 9 Overlap #: 12 Alignment: GKWRCACKCASKYCGAKSYT-------- --------TACCTGAGACTGGGTAATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 144 Combined Motif Reverse Complement Reverse Complement AAATTACCRAGDKKSABGTKRGTGKWRC GGGCTCCCACAGTGCAGCGG AAATTACCRAGDGGGMTSYBASWGTGMMGCGG Direction: Forward Position #: 13 Overlap #: 16 Alignment: AAATTACCRAGDKKSABGTKRGTGKWRC---- ------------GGGCTCCCACAGTGCAGCGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 23 Combined Motif Reverse Complement Reverse Complement CCGCYRCACWSTBKSARCCCDCTKGGTAATTT ACTCCCTAGTGAGATGAACC CCGCYRCACWSTBKRMKCCCDMKTGRKAWKWWCC Direction: Forward Position #: 15 Overlap #: 18 Alignment: CCGCYRCACWSTBKSARCCCDCTKGGTAATTT-- --------------ACTCCCTAGTGAGATGAACC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 119 Combined Motif Original Motif Reverse Complement CCGCYRCACWSTBKRMKCCCDMKTGRKAWKWWCC KKCACCTTGATCTTGGACTT CCGCYRCACWSTBKRBKCMCHHTKRDBWTKDACYT Direction: Forward Position #: 16 Overlap #: 19 Alignment: CCGCYRCACWSTBKRMKCCCDMKTGRKAWKWWCC- ---------------KKCACCTTGATCTTGGACTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 322 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 322 Motif 196 Reverse Complement Reverse Complement GCAWSTGCAAAGGCCCT CAAGCCTSKGCAATGGCAGG GCMTSTGCAAWGGCMSKCAA Direction: Backward Position #: 1 Overlap #: 17 Alignment: ---GCAWSTGCAAAGGCCCT CAAGCCTSKGCAATGGCAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 171 Combined Motif Original Motif Original Motif GCMTSTGCAAWGGCMSKCAA AAAAGTCCACAGTCCAAAGT GCMTSTGCAAARGYCCWCARTCCAAAGT Direction: Forward Position #: 9 Overlap #: 12 Alignment: GCMTSTGCAAWGGCMSKCAA-------- --------AAAAGTCCACAGTCCAAAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 137 Combined Motif Reverse Complement Original Motif ACTTTGGAKTGWGGMCKTTTGCASARGC AGGTTTGTTACATAGGTAWA ACTTTGGAKTGWRGVYTTKTKMMVWRGSTAWA Direction: Forward Position #: 13 Overlap #: 16 Alignment: ACTTTGGAKTGWGGMCKTTTGCASARGC---- ------------AGGTTTGTTACATAGGTAWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 64 Combined Motif Reverse Complement Reverse Complement TWTASCKWBRYRAYAAMVCKWCARTCCAAAGT KCCGGGCCTTAGCTGCCTTC TWTASCKWBRYRAYDMMGSGMCWDWSCWRMSTTC Direction: Forward Position #: 15 Overlap #: 18 Alignment: TWTASCKWBRYRAYAAMVCKWCARTCCAAAGT-- --------------KCCGGGCCTTAGCTGCCTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 86 Combined Motif Reverse Complement Original Motif GAASRMWGSWDWGRCSCRRDKTKMMVWRGSTAWA AGTAGGTGCTCARTAAATRB GAASRMWGSWDWGRCVSDADGTGCTCARKVWATAB Direction: Forward Position #: 16 Overlap #: 19 Alignment: GAASRMWGSWDWGRCSCRRDKTKMMVWRGSTAWA- ---------------AGTAGGTGCTCARTAAATRB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 323 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 323 Motif 291 Reverse Complement Original Motif TGGACCTGAGAGC CTGAGGACCTGAGGTCRTA RTAWGGACCTGAGRKCCTG Direction: Backward Position #: 4 Overlap #: 13 Alignment: ---TGGACCTGAGAGC--- CTGAGGACCTGAGGTCRTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 52 Original Motif Original Motif RTAWGGACCTGAGRKCCTG GACTGGCAGGCAGCTCCACC GACTGGCAGKMAGSWCCWSMGRKCCTG Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------RTAWGGACCTGAGRKCCTG GACTGGCAGGCAGCTCCACC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 29 Combined Motif Reverse Complement Reverse Complement CAGGRKCRSWGGWSCTRYCTGCCAGTC MGTCTMKCTCTGTKGCCCAG CAGGRKCRSWGRDBCTVBCTSYSWGKCCCAG Direction: Forward Position #: 12 Overlap #: 16 Alignment: CAGGRKCRSWGGWSCTRYCTGCCAGTC---- -----------MGTCTMKCTCTGTKGCCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 225 Combined Motif Original Motif Reverse Complement CAGGRKCRSWGRDBCTVBCTSYSWGKCCCAG AAGTTCTKGGKTACATGTGC CAGGRKCRSWGRDHMKHTCTGBGDKWCMYRKGC Direction: Forward Position #: 14 Overlap #: 18 Alignment: CAGGRKCRSWGRDBCTVBCTSYSWGKCCCAG-- -------------AAGTTCTKGGKTACATGTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 362 Combined Motif Original Motif Reverse Complement CAGGRKCRSWGRDHMKHTCTGBGDKWCMYRKGC GGACCTTCAGAGC CAGGRKCRSWGRDHSGAYCTTBRGWGCMYRKGC Direction: Forward Position #: 15 Overlap #: 13 Alignment: CAGGRKCRSWGRDHMKHTCTGBGDKWCMYRKGC --------------GGACCTTCAGAGC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 324 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 324 Motif 355 Original Motif Original Motif ACGCACCTGTA TATGAGCCTGTAA AAYGMRCCTGTAT Direction: Backward Position #: 2 Overlap #: 11 Alignment: -ACGCACCTGTA- TATGAGCCTGTAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 167 Combined Motif Reverse Complement Original Motif ATACAGGKYCMTT CCGCTCCTGTGC ATACMSGBTCCTKTGC Direction: Forward Position #: 5 Overlap #: 9 Alignment: ATACAGGKYCMTT--- ----CCGCTCCTGTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 104 Reverse Complement Original Motif GCARAGGABCSRGTAT CAACATGGATGRARCTGGAG CAACATGGMWGARGMTSGAGTAT Direction: Forward Position #: 8 Overlap #: 13 Alignment: -------GCARAGGABCSRGTAT CAACATGGATGRARCTGGAG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 149 Combined Motif Reverse Complement Original Motif ATACTCSARCKTCWRCCATGTTG ACTCAGCCCRCCTGCACCC ATACTCSARMYTCAGCCMDSYTGCACCC Direction: Forward Position #: 10 Overlap #: 14 Alignment: ATACTCSARCKTCWRCCATGTTG----- ---------ACTCAGCCCRCCTGCACCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 98 Combined Motif Original Motif Original Motif ATACTCSARMYTCAGCCMDSYTGCACCC AGTTCCGGGTGGGCGTGGG ATACTCSARMYTMRKYCCGGBTGSRCSYGGG Direction: Forward Position #: 13 Overlap #: 16 Alignment: ATACTCSARMYTCAGCCMDSYTGCACCC--- ------------AGTTCCGGGTGGGCGTGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 325 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 325 Motif 25 Original Motif Reverse Complement AGCAGCTGTAAATA GTACCTCAGWTGGAAATG AATGRKMMSYYRKAWRKA Direction: Backward Position #: 5 Overlap #: 14 Alignment: AGCAGCTGTAAATA---- GTACCTCAGWTGGAAATG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 303 Combined Motif Original Motif Original Motif AATGRKMMSYYRKAWRKA AGTTCTTAAAGATGGT AATGRKMAGYTVTWAAWRATGGT Direction: Forward Position #: 8 Overlap #: 11 Alignment: AATGRKMMSYYRKAWRKA----- -------AGTTCTTAAAGATGGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 139 Combined Motif Reverse Complement Original Motif ACCATKWTTWAVAMCTYYKCATT AGCCYCTGGYAACCAYYAWT ACCATKWTTARCMMCTBBBMAYYAYYAWT Direction: Forward Position #: 10 Overlap #: 14 Alignment: ACCATKWTTWAVAMCTYYKCATT------ ---------AGCCYCTGGYAACCAYYAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 304 Combined Motif Original Motif Reverse Complement ACCATKWTTARCMMCTBBBMAYYAYYAWT AGCAGYTTGGAAACACT ACCATKWTTARCAVCWGBTHRKWAMCAYT Direction: Forward Position #: 13 Overlap #: 17 Alignment: ACCATKWTTARCMMCTBBBMAYYAYYAWT ------------AGCAGYTTGGAAACACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 242 Combined Motif Original Motif Reverse Complement ACCATKWTTARCAVCWGBTHRKWAMCAYT CMCAGTTCACAATAGGGTT ACCATKWTTARCMVCAGTTCACAAWMRBKTT Direction: Forward Position #: 13 Overlap #: 17 Alignment: ACCATKWTTARCAVCWGBTHRKWAMCAYT-- ------------CMCAGTTCACAATAGGGTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 326 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 326 Motif 105 Original Motif Reverse Complement GACATGGAGTCAAAGG GGAGGTGTGGAGGGAGAGGC GGASRTGKRGWSRRAGRGGC Direction: Forward Position #: 2 Overlap #: 16 Alignment: -GACATGGAGTCAAAGG--- GGAGGTGTGGAGGGAGAGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 290 Combined Motif Original Motif Original Motif GGASRTGKRGWSRRAGRGGC TGATACCCAGGCAAACAG GGASRTGKTGAYAVMSAGGCAAACAG Direction: Forward Position #: 9 Overlap #: 12 Alignment: GGASRTGKRGWSRRAGRGGC------ --------TGATACCCAGGCAAACAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 104 Combined Motif Original Motif Original Motif GGASRTGKTGAYAVMSAGGCAAACAG CAACATGGATGRARCTGGAG GGASRTGKTGABAACVWGGMWRAMASTGGAG Direction: Forward Position #: 12 Overlap #: 15 Alignment: GGASRTGKTGAYAVMSAGGCAAACAG----- -----------CAACATGGATGRARCTGGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 293 Combined Motif Reverse Complement Original Motif CTCCASTRTKWYCCWVGTTBTCARCAMSTCC CTGACTGGGAGACACCTCCC CTCCASTRTKWYCCTRRYTGKSAGMMACYYCCC Direction: Forward Position #: 14 Overlap #: 18 Alignment: CTCCASTRTKWYCCWVGTTBTCARCAMSTCC-- -------------CTGACTGGGAGACACCTCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 109 Combined Motif Original Motif Reverse Complement CTCCASTRTKWYCCTRRYTGKSAGMMACYYCCC TCTCTCTCTCTCTCTCTCTC CTCCASTRTKWYCCTVDCTSKCWSHCWCTCYCYC Direction: Forward Position #: 15 Overlap #: 19 Alignment: CTCCASTRTKWYCCTRRYTGKSAGMMACYYCCC- --------------TCTCTCTCTCTCTCTCTCTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 327 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 327 Motif 85 Reverse Complement Original Motif GAAATTGACTTCCTCCT CTAGACATAAAGGTTCTCCA CCASWARWYRWMWWSSTYCT Direction: Backward Position #: 4 Overlap #: 17 Alignment: GAAATTGACTTCCTCCT--- CTAGACATAAAGGTTCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 328 Combined Motif Original Motif Reverse Complement CCASWARWYRWMWWSSTYCT KACATTGATTTTGTATC CCASWARWTAMMTTGATTYTGTATC Direction: Forward Position #: 9 Overlap #: 12 Alignment: CCASWARWYRWMWWSSTYCT----- --------KACATTGATTTTGTATC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 350 Combined Motif Original Motif Original Motif CCASWARWTAMMTTGATTYTGTATC TCTGGAGTGGACCTCCAGCA CCASWARWTATCTKGAKTBKRYMTCCAGCA Direction: Forward Position #: 11 Overlap #: 15 Alignment: CCASWARWTAMMTTGATTYTGTATC----- ----------TCTGGAGTGGACCTCCAGCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 86 Combined Motif Original Motif Reverse Complement CCASWARWTATCTKGAKTBKRYMTCCAGCA VMATTTAKTGAGCACCTACT CCASWARWTATCTDSATTKDDTVWSCASCWACT Direction: Forward Position #: 14 Overlap #: 17 Alignment: CCASWARWTATCTKGAKTBKRYMTCCAGCA--- -------------VMATTTAKTGAGCACCTACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 333 Combined Motif Reverse Complement Reverse Complement AGTWGSTGSWVAHDRAATSDAGATAWMTWSTGG AAAGCTGGAGCTATTATCTA AGTWGSTGSWVAHDAAAKCTRGAKCTATTVTSKA Direction: Forward Position #: 15 Overlap #: 19 Alignment: AGTWGSTGSWVAHDRAATSDAGATAWMTWSTGG- --------------AAAGCTGGAGCTATTATCTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 328 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 328 Motif 119 Original Motif Original Motif GATACAAAATCAATGTR AAGTCCAAGATCAAGGTGYY ARRTMCAARATCAABGTRYY Direction: Forward Position #: 2 Overlap #: 17 Alignment: -GATACAAAATCAATGTR-- AAGTCCAAGATCAAGGTGYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Combined Motif Original Motif Original Motif ARRTMCAARATCAABGTRYY CACCAGGAGATTATATCCCR ARRTMCAAMAYCARGRKAYTATATCCCR Direction: Forward Position #: 9 Overlap #: 12 Alignment: ARRTMCAARATCAABGTRYY-------- --------CACCAGGAGATTATATCCCR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 202 Combined Motif Reverse Complement Reverse Complement MGGGATATAMTYKCKTGKTRTTGYAKMT GAAACTGCTTTGTGATGTGT MGGGATATAMTYGMDWSTKCTTKBWGATGTGT Direction: Forward Position #: 13 Overlap #: 16 Alignment: MGGGATATAMTYKCKTGKTRTTGYAKMT---- ------------GAAACTGCTTTGTGATGTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 58 Combined Motif Original Motif Original Motif MGGGATATAMTYGMDWSTKCTTKBWGATGTGT ATGGACAYTTRGGTTGHTTC MGGGATATAMTYGMATGKDCWTTTAGRTKKGTTC Direction: Forward Position #: 15 Overlap #: 18 Alignment: MGGGATATAMTYGMDWSTKCTTKBWGATGTGT-- --------------ATGGACAYTTRGGTTGHTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 327 Combined Motif Reverse Complement Original Motif GAACRRAMCTAAAWGDYCATYCKAYTATATCCCR AGGAGGAAGTCAATTTC GAACRRAMCTAAAWGASSAKGMRRTYAWWTYCCR Direction: Forward Position #: 16 Overlap #: 17 Alignment: GAACRRAMCTAAAWGDYCATYCKAYTATATCCCR ---------------AGGAGGAAGTCAATTTC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 329 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 329 Motif 333 Reverse Complement Original Motif GCTAATATATCCCTCCC TAGATAATAGCTCCAGCTTT TAGMTAATAKMTCCMKCYYT Direction: Forward Position #: 3 Overlap #: 17 Alignment: --GCTAATATATCCCTCCC- TAGATAATAGCTCCAGCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 235 Combined Motif Original Motif Reverse Complement TAGMTAATAKMTCCMKCYYT GCCAATTTCTCCCATTTGGA TAGMTAATRBCWMYHTCTCYCATTTGGA Direction: Forward Position #: 9 Overlap #: 12 Alignment: TAGMTAATAKMTCCMKCYYT-------- --------GCCAATTTCTCCCATTTGGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 293 Combined Motif Reverse Complement Reverse Complement TCCAAATGKGAGAHMRWGBKATTARCTA GGGAGGTGTCTCCCAGTCAG TCCAAATGKGAGRDVADGTGWYTMVCWRTCAG Direction: Forward Position #: 13 Overlap #: 16 Alignment: TCCAAATGKGAGAHMRWGBKATTARCTA---- ------------GGGAGGTGTCTCCCAGTCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 83 Combined Motif Original Motif Original Motif TCCAAATGKGAGRDVADGTGWYTMVCWRTCAG AAAATGTGGTAYATAYAYAC TCCAAATGKGAGRDAAARTGTBKHMCADWYASAC Direction: Forward Position #: 15 Overlap #: 18 Alignment: TCCAAATGKGAGRDVADGTGWYTMVCWRTCAG-- --------------AAAATGTGGTAYATAYAYAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 279 Combined Motif Reverse Complement Original Motif GTSTKWDTGYHRBACAKTTTHMCTCYCATTTGGA GGGGGAGACATCACACR GTSTKWDTGYHRBACRGGKGASMYMTCAYWYGGA Direction: Forward Position #: 16 Overlap #: 17 Alignment: GTSTKWDTGYHRBACAKTTTHMCTCYCATTTGGA ---------------GGGGGAGACATCACACR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 330 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 330 Motif 63 Reverse Complement Original Motif ATAAAAACTTGCTGGTTTT AGTGAGAACATRYRRTRTTT AKWRARAMYWKSTGGTKTTT Direction: Forward Position #: 1 Overlap #: 19 Alignment: ATAAAAACTTGCTGGTTTT- AGTGAGAACATRYRRTRTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 308 Original Motif Reverse Complement AKWRARAMYWKSTGGTKTTT GTTATTAATTGGCCTAATTT GWTADWAAHTDGCYKRWTTTT Direction: Forward Position #: 2 Overlap #: 19 Alignment: -AKWRARAMYWKSTGGTKTTT GTTATTAATTGGCCTAATTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 254 Combined Motif Original Motif Reverse Complement GWTADWAAHTDGCYKRWTTTT ATAGGAATGCTTGTGATTTT GWTADWAAATAGSMADDYTTKTGATTTT Direction: Forward Position #: 9 Overlap #: 13 Alignment: GWTADWAAHTDGCYKRWTTTT------- --------ATAGGAATGCTTGTGATTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 99 Combined Motif Reverse Complement Reverse Complement AAAATCARAAKHDTYSCTATTTWDTAWC AATGAKATCATGTCYTTTGC AAAATCARAAKHAATGMKATYDTGTMHYTTGC Direction: Forward Position #: 13 Overlap #: 16 Alignment: AAAATCARAAKHDTYSCTATTTWDTAWC---- ------------AATGAKATCATGTCYTTTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 202 Combined Motif Reverse Complement Reverse Complement GCAAMHRACADMATRYCATTDYTTKTGATTTT GAAACTGCTTTGTGATGTGT GCAAMHRACADMATGAMAYTGCTTTKKRWTKTGT Direction: Forward Position #: 15 Overlap #: 18 Alignment: GCAAMHRACADMATRYCATTDYTTKTGATTTT-- --------------GAAACTGCTTTGTGATGTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 331 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 331 Motif 119 Reverse Complement Reverse Complement GCCTCCTTGAGCTGTGGTGG KKCACCTTGATCTTGGACTT GSCWCCTTGAKCTKKGRYKK Direction: Forward Position #: 1 Overlap #: 20 Alignment: GCCTCCTTGAGCTGTGGTGG KKCACCTTGATCTTGGACTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 155 Combined Motif Reverse Complement Original Motif YYMMCRYAGYTCAAGGWGSC TCCCTCCCGGACGGGGYGGC YYMMCRYAKCYCWMSSRGRCGGGGYGGC Direction: Forward Position #: 9 Overlap #: 12 Alignment: YYMMCRYAGYTCAAGGWGSC-------- --------TCCCTCCCGGACGGGGYGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 23 Combined Motif Reverse Complement Reverse Complement GCCKCCCCGKCMSSRWGKGRTKKGRYKK ACTCCCTAGTGAGATGAACC GCCKCCCCGKCMACDMSSKAKTGRGWTGAACC Direction: Forward Position #: 13 Overlap #: 16 Alignment: GCCKCCCCGKCMSSRWGKGRTKKGRYKK---- ------------ACTCCCTAGTGAGATGAACC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 179 Combined Motif Reverse Complement Reverse Complement GGTTCAWCKCARTYSSRDGTRGRCGGGGYGGC GAATACCTCCTGAAGGACCT GGTTCAWCKCARTYGVATRCVKMCKGRRSGRCCT Direction: Forward Position #: 15 Overlap #: 18 Alignment: GGTTCAWCKCARTYSSRDGTRGRCGGGGYGGC-- --------------GAATACCTCCTGAAGGACCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 310 Combined Motif Reverse Complement Original Motif AGGMCSMKCRGRRVGKATBCKAKTGRGWTGAACC CCCATGCAAGTCYRAAATCC AGGMCSMKCRGRRVGCMYAYGMRWGWSHKRAAYCC Direction: Forward Position #: 16 Overlap #: 19 Alignment: AGGMCSMKCRGRRVGKATBCKAKTGRGWTGAACC- ---------------CCCATGCAAGTCYRAAATCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 332 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 332 Motif 336 Original Motif Reverse Complement CTGGCCCTCAATGGTTAAAC CAGGTGGTKTTTGGTTACAT CWGGYSSTBWWTGGTTAMAY Direction: Backward Position #: 1 Overlap #: 20 Alignment: CTGGCCCTCAATGGTTAAAC CAGGTGGTKTTTGGTTACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 179 Combined Motif Reverse Complement Reverse Complement MTRTAACCAWWBASSMCCWG GAATACCTCCTGAAGGACCT MTRTAACCRAATACCWCCTGAAGGACCT Direction: Forward Position #: 9 Overlap #: 12 Alignment: MTRTAACCAWWBASSMCCWG-------- --------GAATACCTCCTGAAGGACCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 170 Combined Motif Original Motif Reverse Complement MTRTAACCRAATACCWCCTGAAGGACCT ATTGATMKCCAGGGTTGATT MTRTAACCRAATAYYDMYHGMMRGRSYTGATT Direction: Forward Position #: 13 Overlap #: 16 Alignment: MTRTAACCRAATACCWCCTGAAGGACCT---- ------------ATTGATMKCCAGGGTTGATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 292 Combined Motif Reverse Complement Original Motif AATCAMSKCKYYCHMYHMMTATTKGGTTAMAY AAGACCTTCCAGTGGGACAA AATCAMSKCKYYCHAHGACYWTYYRGTKRVACAA Direction: Forward Position #: 15 Overlap #: 18 Alignment: AATCAMSKCKYYCHMYHMMTATTKGGTTAMAY-- --------------AAGACCTTCCAGTGGGACAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 29 Combined Motif Original Motif Reverse Complement AATCAMSKCKYYCHAHGACYWTYYRGTKRVACAA MGTCTMKCTCTGTKGCCCAG AATCAMSKCKYYCHAMGWCTHTCTVKKTDGMCMAG Direction: Forward Position #: 16 Overlap #: 19 Alignment: AATCAMSKCKYYCHAHGACYWTYYRGTKRVACAA- ---------------MGTCTMKCTCTGTKGCCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 333 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 333 Motif 106 Reverse Complement Original Motif AAAGCTGGAGCTATTATCTA ATTGGTGTATTTACAATCCC AWWGSTGKAKYTAYWATCYM Direction: Backward Position #: 1 Overlap #: 20 Alignment: AAAGCTGGAGCTATTATCTA ATTGGTGTATTTACAATCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 96 Combined Motif Reverse Complement Reverse Complement YMGATWMTAKRTYCASCWWT GGAGCCGGCTCCCTCAGCTT YMGATWMTRGAKCCRGCTCYCTCAGCTT Direction: Forward Position #: 9 Overlap #: 12 Alignment: YMGATWMTAKRTYCASCWWT-------- --------GGAGCCGGCTCCCTCAGCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 234 Combined Motif Reverse Complement Reverse Complement AAGCTGAGKGAGCKGGYTCKAYWATCYM GTGTCKGGAGTTTGTTCCTT AAGCTGAGKGAGSTGKCKSGABTWTSTHCCTT Direction: Forward Position #: 13 Overlap #: 16 Alignment: AAGCTGAGKGAGCKGGYTCKAYWATCYM---- ------------GTGTCKGGAGTTTGTTCCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 196 Combined Motif Reverse Complement Original Motif AAGGHASAWABTCSRGRCASCTCYCTCAGCTT CCTGCCATTGCYSAGGCTTG AAGGHASAWABTCSVSDSMCMTTBCTCAGSYTTG Direction: Forward Position #: 15 Overlap #: 18 Alignment: AAGGHASAWABTCSRGRCASCTCYCTCAGCTT-- --------------CCTGCCATTGCYSAGGCTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 194 Combined Motif Reverse Complement Reverse Complement CAAMSCTGAGBAARGRSDSVSGABTWTSTHCCTT CAGCTACTCKTATACCCTTG CAAMSCTGAGBAARGSMGCTVSWCTTWBWCCCTTG Direction: Forward Position #: 16 Overlap #: 19 Alignment: CAAMSCTGAGBAARGRSDSVSGABTWTSTHCCTT- ---------------CAGCTACTCKTATACCCTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 334 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 334 Motif 272 Original Motif Original Motif CATCTGTCAC CAGCTGTCAC CAKCTGTCAC Direction: Backward Position #: 1 Overlap #: 10 Alignment: CATCTGTCAC CAGCTGTCAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 1 Reverse Complement Reverse Complement GTGACAGYTG BCVTCTGTCACCCC BCVTSTGWCASCYS Direction: Forward Position #: 5 Overlap #: 10 Alignment: ----GTGACAGYTG BCVTCTGTCACCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Reverse Complement Reverse Complement SMGSTGWCASABGB GGRRMCAGATGT SMGSTGDVAVMAGATGT Direction: Forward Position #: 6 Overlap #: 9 Alignment: SMGSTGWCASABGB--- -----GGRRMCAGATGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 205 Combined Motif Reverse Complement Reverse Complement ACATCTRVTVHCASCYS TGGGCTGCCAGATG ACATCTDGKGCYRCCAGATG Direction: Forward Position #: 7 Overlap #: 11 Alignment: ACATCTRVTVHCASCYS--- ------TGGGCTGCCAGATG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 199 Combined Motif Reverse Complement Reverse Complement CATCTGGKMGCYCDAGATGT GGTGCCAGCTGT CATCTGGKGGYBCCAGMTGT Direction: Forward Position #: 9 Overlap #: 12 Alignment: CATCTGGKMGCYCDAGATGT --------GGTGCCAGCTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 335 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 335 Motif 184 Original Motif Original Motif GTTAATGCTGA ATATTGATGATCCTGACC ATATTGWTRATSCTGACC Direction: Forward Position #: 6 Overlap #: 11 Alignment: -----GTTAATGCTGA-- ATATTGATGATCCTGACC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 262 Reverse Complement Reverse Complement GGTCAGSATKAWCAATAT GACAGGAGATTAACACTGAG GACAGGAGRKTMASMMTGAGCAATAT Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------GGTCAGSATKAWCAATAT GACAGGAGATTAACACTGAG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 278 Combined Motif Reverse Complement Original Motif ATATTGCTCAYYSTYARKCTCCTGTC ACTTTCAGGCATAACA ATATTGCTCAYACTTWCASKCMTRWCA Direction: Forward Position #: 12 Overlap #: 15 Alignment: ATATTGCTCAYYSTYARKCTCCTGTC- -----------ACTTTCAGGCATAACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 261 Combined Motif Reverse Complement Reverse Complement TGWMAYGYSTGWAAGTMTGAGCAATAT TAGTGGTGATTTSTGAGAT TGWMAYGYSTGTARKKVTGATYWRTRWGAT Direction: Forward Position #: 12 Overlap #: 16 Alignment: TGWMAYGYSTGWAAGTMTGAGCAATAT--- -----------TAGTGGTGATTTSTGAGAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 102 Combined Motif Original Motif Reverse Complement TGWMAYGYSTGTARKKVTGATYWRTRWGAT GTTGTGAGGATTAAATGAG TGWMAYGYSTGTARTKGTGAKBADTAARWKAG Direction: Forward Position #: 14 Overlap #: 17 Alignment: TGWMAYGYSTGTARKKVTGATYWRTRWGAT-- -------------GTTGTGAGGATTAAATGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 336 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 336 Motif 332 Original Motif Reverse Complement ATGTAACCAAAYACCACCTG GTTTAACCATTGAGGGCCAG RTKTAACCAWWBASSRCCWG Direction: Backward Position #: 1 Overlap #: 20 Alignment: ATGTAACCAAAYACCACCTG GTTTAACCATTGAGGGCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 55 Combined Motif Original Motif Reverse Complement RTKTAACCAWWBASSRCCWG ATGGCTGAATAKTATTCCAT RTKTAACCAWDGMKGRMYAGTATTCCAT Direction: Forward Position #: 9 Overlap #: 12 Alignment: RTKTAACCAWWBASSRCCWG-------- --------ATGGCTGAATAKTATTCCAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 115 Combined Motif Original Motif Original Motif RTKTAACCAWDGMKGRMYAGTATTCCAT ATGATCCAGCAATYCCACTH RTKTAACCAWDGATGAYCMRKMWWYCMYACTH Direction: Forward Position #: 13 Overlap #: 16 Alignment: RTKTAACCAWDGMKGRMYAGTATTCCAT---- ------------ATGATCCAGCAATYCCACTH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 234 Combined Motif Original Motif Original Motif RTKTAACCAWDGATGAYCMRKMWWYCMYACTH AAGGAACAAACTCCRGACAC RTKTAACCAWDGATRABSAABAAACYCYASWCAC Direction: Forward Position #: 15 Overlap #: 18 Alignment: RTKTAACCAWDGATGAYCMRKMWWYCMYACTH-- --------------AAGGAACAAACTCCRGACAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 160 Combined Motif Reverse Complement Reverse Complement GTGWSTKGMGTTTBTTSBTKATCHWTGGTTAYAK TACCTGAGACTGGGTAATTT GTGWSTKGMGTTTBTTVCYKRWSMMTGGKTAMWTT Direction: Forward Position #: 16 Overlap #: 19 Alignment: GTGWSTKGMGTTTBTTSBTKATCHWTGGTTAYAK- ---------------TACCTGAGACTGGGTAATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 337 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 337 Motif 195 Original Motif Original Motif AAACTAGAAA TAAAAGACTACAWATTGGGT TTGGGTARACTASAAATAAA Direction: Backward Position #: 7 Overlap #: 10 Alignment: ----AAACTAGAAA------ TAAAAGACTACAWATTGGGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 330 Combined Motif Original Motif Original Motif TTGGGTARACTASAAATAAA AAAACCAGCAAGTTTTTAT TTGGGTARAMWACMARYAARTTTTTAT Direction: Forward Position #: 9 Overlap #: 12 Alignment: TTGGGTARACTASAAATAAA------- --------AAAACCAGCAAGTTTTTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Reverse Complement ATAAAAAMTTKMTRGTWYTKTACCCAA TTTYTWTTTTTTYTWGAGAC ATAAAAAMTTKHTDBTWTTTTWYYYWRAGAC Direction: Forward Position #: 12 Overlap #: 16 Alignment: ATAAAAAMTTKMTRGTWYTKTACCCAA---- -----------TTTYTWTTTTTTYTWGAGAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 233 Combined Motif Original Motif Reverse Complement ATAAAAAMTTKHTDBTWTTTTWYYYWRAGAC AGGCTGTTTTACAGTTAAC ATAAAAAMTTKHTAGKYTKTTTTMCAGWKAMC Direction: Forward Position #: 14 Overlap #: 18 Alignment: ATAAAAAMTTKHTDBTWTTTTWYYYWRAGAC- -------------AGGCTGTTTTACAGTTAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 73 Combined Motif Reverse Complement Original Motif GYTRWCTGYAAAARAKRCTAHYAARTTTTTAT CAAACTGCAAG GYTRWCTGYAAAARMAAMYWVCAAGTTTTTAT Direction: Forward Position #: 15 Overlap #: 11 Alignment: GYTRWCTGYAAAARAKRCTAHYAARTTTTTAT --------------CAAACTGCAAG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 338 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 338 Motif 68 Reverse Complement Original Motif GGCTGCAG CATGGCGGGCTGCAGGTC CATGGCKGSMKGCAGGTC Direction: Forward Position #: 4 Overlap #: 8 Alignment: ---GGCTGCAG------- CATGGCGGGCTGCAGGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 219 Combined Motif Reverse Complement Original Motif GACCTGCRRSCRGCCATG CTGCAGCCTC GACCTGCMKGCAGCCWYG Direction: Forward Position #: 8 Overlap #: 10 Alignment: GACCTGCRRSCRGCCATG -------CTGCAGCCTC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 149 Reverse Complement Reverse Complement CKWGGCTGCRRGCAGGTC GGGTGCAGGMGGGCTGAGT GGGTGCASGHGGSYKSAGKCAGGTC Direction: Forward Position #: 8 Overlap #: 12 Alignment: -------CKWGGCTGCRRGCAGGTC GGGTGCAGGMGGGCTGAGT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 89 Combined Motif Original Motif Original Motif GGGTGCASGHGGSYKSAGKCAGGTC GGCTGCGGAGGGTGTA GGGTGCASGHGGCTGCRGDSRGKKYA Direction: Forward Position #: 11 Overlap #: 15 Alignment: GGGTGCASGHGGSYKSAGKCAGGTC- ----------GGCTGCGGAGGGTGTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 220 Combined Motif Original Motif Reverse Complement GGGTGCASGHGGCTGCRGDSRGKKYA GTGGGTGCAGTGCA GGGTGCASGHGGYKGSTGMAGKGCHA Direction: Forward Position #: 12 Overlap #: 14 Alignment: GGGTGCASGHGGCTGCRGDSRGKKYA -----------GTGGGTGCAGTGCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 339 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 339 Motif 60 Original Motif Reverse Complement CTCACCTCCTGC CTCCTGACCTCGTGATC CTCYYRMCYYCKKSATC Direction: Forward Position #: 3 Overlap #: 12 Alignment: --CTCACCTCCTGC--- CTCCTGACCTCGTGATC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 179 Reverse Complement Original Motif GATSRRGMKGYMMMGAG AGGTCCTTCAGGAGGTATTC AGGTCCTKMWGGAGVTRTHCMGAG Direction: Forward Position #: 8 Overlap #: 13 Alignment: -------GATSRRGMKGYMMMGAG AGGTCCTTCAGGAGGTATTC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 149 Combined Motif Original Motif Reverse Complement AGGTCCTKMWGGAGVTRTHCMGAG GGGTGCAGGMGGGCTGAGT AGGTCCTKMWGGRKGYAKGMVGRSTGAGT Direction: Forward Position #: 11 Overlap #: 14 Alignment: AGGTCCTKMWGGAGVTRTHCMGAG----- ----------GGGTGCAGGMGGGCTGAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 262 Combined Motif Reverse Complement Original Motif ACTCASMCVRCYTKCRMCCWYRAGGACCT CTCAGTGTTAATCTCCTGTC ACTCASMCVRCYYTCASYSTTAAKSWCCTGTC Direction: Forward Position #: 13 Overlap #: 17 Alignment: ACTCASMCVRCYTKCRMCCWYRAGGACCT--- ------------CTCAGTGTTAATCTCCTGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 165 Combined Motif Original Motif Original Motif ACTCASMCVRCYYTCASYSTTAAKSWCCTGTC ATCTGACAGGAGGYRGAGCT ACTCASMCVRCYYTMWCTGWYARGVDSCKGWSCT Direction: Forward Position #: 15 Overlap #: 18 Alignment: ACTCASMCVRCYYTCASYSTTAAKSWCCTGTC-- --------------ATCTGACAGGAGGYRGAGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 340 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 340 Motif 302 Original Motif Original Motif GACCCAGAGAGC GACCCTGAGAGC GACCCWGAGAGC Direction: Backward Position #: 1 Overlap #: 12 Alignment: GACCCAGAGAGC GACCCTGAGAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 362 Reverse Complement Reverse Complement GCTCTCWGGGTC GGACCTTCAGAGC GGACSYTCWSAGSGTC Direction: Forward Position #: 5 Overlap #: 9 Alignment: ----GCTCTCWGGGTC GGACCTTCAGAGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 175 Original Motif Reverse Complement GGACSYTCWSAGSGTC GCACTCTGTMTCTAGCT GCACTCKGWCKCTMDCWGSGTC Direction: Forward Position #: 7 Overlap #: 11 Alignment: ------GGACSYTCWSAGSGTC GCACTCTGTMTCTAGCT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 323 Combined Motif Reverse Complement Reverse Complement GACSCWGHYAGRGWCYGAGTGC TGGACCTGAGAGC GACSCWGHYWGGRHCTGAGWGC Direction: Forward Position #: 10 Overlap #: 13 Alignment: GACSCWGHYAGRGWCYGAGTGC ---------TGGACCTGAGAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 60 Combined Motif Reverse Complement Original Motif GCWCTCAGDKCCWMDCWGSGTC GATCACGAGGTCAGGAG GCWCTCAGDGAYYABSAGGKYMGGAG Direction: Forward Position #: 10 Overlap #: 13 Alignment: GCWCTCAGDKCCWMDCWGSGTC---- ---------GATCACGAGGTCAGGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 341 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 341 Motif 115 Reverse Complement Reverse Complement TGGATGGATGGATGGAT HAGTGGKATTGCTGGATCAT TRGWKGGATKGMTGGATCAT Direction: Forward Position #: 1 Overlap #: 17 Alignment: TGGATGGATGGATGGAT--- HAGTGGKATTGCTGGATCAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 58 Combined Motif Original Motif Original Motif TRGWKGGATKGMTGGATCAT ATGGACAYTTRGGTTGHTTC TRGWKGGAWTGVWSRMTYAKGTTGHTTC Direction: Forward Position #: 9 Overlap #: 12 Alignment: TRGWKGGATKGMTGGATCAT-------- --------ATGGACAYTTRGGTTGHTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 53 Combined Motif Original Motif Reverse Complement TRGWKGGAWTGVWSRMTYAKGTTGHTTC CTTGGGTGGTCGATGGGAC TRGWKGGAWTGVHTTVKBWGGTYGATKSGAC Direction: Forward Position #: 13 Overlap #: 16 Alignment: TRGWKGGAWTGVWSRMTYAKGTTGHTTC--- ------------CTTGGGTGGTCGATGGGAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 66 Combined Motif Original Motif Reverse Complement TRGWKGGAWTGVHTTVKBWGGTYGATKSGAC TGTGTGTGTGTKTGTGTGT TRGWKGGAWTGVHTKKKKKKGTBKDTGKGWST Direction: Forward Position #: 14 Overlap #: 18 Alignment: TRGWKGGAWTGVHTTVKBWGGTYGATKSGAC- -------------TGTGTGTGTGTKTGTGTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 105 Combined Motif Reverse Complement Original Motif ASWCRCADYBACRYRYRYADVCAWTCCRWCMA GCCTCTCCCTCCACACCTCC ASWCRCADYBACRYRCCTMTCCMTYCMMACCWCC Direction: Forward Position #: 15 Overlap #: 18 Alignment: ASWCRCADYBACRYRYRYADVCAWTCCRWCMA-- --------------GCCTCTCCCTCCACACCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 342 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 342 Motif 129 Original Motif Reverse Complement GCCTATTAAAC TGAGKCAATTAAACCTCTT CTTSMMTWWWAMMYTGAGK Direction: Backward Position #: 4 Overlap #: 11 Alignment: -----GCCTATTAAAC--- TGAGKCAATTAAACCTCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 137 Reverse Complement Original Motif RCTCAMYYTWWWARRSAAG AGGTTTGTTACATAGGTAWA AGGTTTGTWMYMWABBTAWAARRSAAG Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------RCTCAMYYTWWWARRSAAG AGGTTTGTTACATAGGTAWA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 308 Combined Motif Original Motif Reverse Complement AGGTTTGTWMYMWABBTAWAARRSAAG GTTATTAATTGGCCTAATTT AGGTTTGTWMYVTWATTAAWWGGCMWRATTT Direction: Forward Position #: 12 Overlap #: 16 Alignment: AGGTTTGTWMYMWABBTAWAARRSAAG---- -----------GTTATTAATTGGCCTAATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 21 Combined Motif Reverse Complement Reverse Complement AAATKWYGCCWWTTAATWAVMYWACAAACCT KACGGGCTTAARAAACGGC AAATKWYGCCWWTTAMBGRCWTAAMAAACSKC Direction: Forward Position #: 14 Overlap #: 18 Alignment: AAATKWYGCCWWTTAATWAVMYWACAAACCT- -------------KACGGGCTTAARAAACGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 348 Combined Motif Reverse Complement Original Motif GYSGTTTRTTAWGKCBYTAAWWGGCMWRATTT ATGGCCTATGACYGSTTTG GYSGTTTRTTAWGKATGKMMTAKGMCHGATTTG Direction: Forward Position #: 15 Overlap #: 18 Alignment: GYSGTTTRTTAWGKCBYTAAWWGGCMWRATTT- --------------ATGGCCTATGACYGSTTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 343 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 343 Motif 4 Original Motif Original Motif CTGGGATTACA GCTGGGATTACAGG GCTGGGATTACAGG Direction: Forward Position #: 2 Overlap #: 11 Alignment: -CTGGGATTACA-- GCTGGGATTACAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 69 Reverse Complement Reverse Complement CCTGTAATCCCAGC TGTAKTCCCAGCTAC TGTAKYCYSWRMTMCCAGC Direction: Forward Position #: 6 Overlap #: 10 Alignment: -----CCTGTAATCCCAGC TGTAKTCCCAGCTAC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 345 Combined Motif Reverse Complement Reverse Complement GCTGGYARKWSMGMYTACA GTTGGATTCCCAG GCTGGYAGTTGGRTTYMCAG Direction: Forward Position #: 8 Overlap #: 12 Alignment: GCTGGYARKWSMGMYTACA- -------GTTGGATTCCCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 278 Original Motif Reverse Complement GCTGGYAGTTGGRTTYMCAG TGTTATGCCTGAAAGT TGTKMTGSCWGWWRGWTTYMCAG Direction: Forward Position #: 4 Overlap #: 13 Alignment: ---GCTGGYAGTTGGRTTYMCAG TGTTATGCCTGAAAGT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 255 Combined Motif Reverse Complement Original Motif CTGRKAAWCKWWCWGSCAYYACA CTGCTATAACAAA CTGRKAAWCYTGCWRBMACMAMA Direction: Forward Position #: 10 Overlap #: 13 Alignment: CTGRKAAWCKWWCWGSCAYYACA ---------CTGCTATAACAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 344 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 344 Motif 99 Original Motif Original Motif CATAGGAGATGAC GCAAAKGACATGATYTCATT YTCATTCAWAGGASATGAYG Direction: Backward Position #: 7 Overlap #: 13 Alignment: -CATAGGAGATGAC------ GCAAAKGACATGATYTCATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 262 Combined Motif Reverse Complement Original Motif CKTCATSTCCTWTGAATGAK CTCAGTGTTAATCTCCTGTC CKTCATSTCYYAKKRWTRATCTCCTGTC Direction: Forward Position #: 9 Overlap #: 12 Alignment: CKTCATSTCCTWTGAATGAK-------- --------CTCAGTGTTAATCTCCTGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 23 Combined Motif Reverse Complement Reverse Complement GACAGGAGATKAWMRRTMMGASATGAYG ACTCCCTAGTGAGATGAACC GACAGGAGATKAACDVYCHRRTRWGATGAACC Direction: Forward Position #: 13 Overlap #: 16 Alignment: GACAGGAGATKAWMRRTMMGASATGAYG---- ------------ACTCCCTAGTGAGATGAACC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 311 Combined Motif Reverse Complement Original Motif GGTTCATCWMAMKHGKVDGTTRATCTCCTGTC GGCATCACGGATCCTACCAA GGTTCATCWMAMKHGGCAKYWVRKMTCCTRYCAA Direction: Forward Position #: 15 Overlap #: 18 Alignment: GGTTCATCWMAMKHGKVDGTTRATCTCCTGTC-- --------------GGCATCACGGATCCTACCAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 36 Combined Motif Reverse Complement Original Motif TTGKKAGGAYYKVWKRTGCCHRRTRWGATGAACC ACATCCCAGACGATGGGCG TTGKKAGGAYYKVWKAYRYCCMAGAHGATGRRCS Direction: Forward Position #: 16 Overlap #: 19 Alignment: TTGKKAGGAYYKVWKRTGCCHRRTRWGATGAACC ---------------ACATCCCAGACGATGGGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 345 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 345 Motif 4 Reverse Complement Reverse Complement GTTGGATTCCCAG CCTGTAATCCCAGC CSYTGKAWTCCCAG Direction: Backward Position #: 2 Overlap #: 13 Alignment: GTTGGATTCCCAG- CCTGTAATCCCAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 154 Reverse Complement Original Motif CTGGGAWTYCAMSG CATTAGATTCTCATAGGA CATTAGMTKSKMATMSRASG Direction: Forward Position #: 7 Overlap #: 12 Alignment: ------CTGGGAWTYCAMSG CATTAGATTCTCATAGGA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 115 Combined Motif Original Motif Original Motif CATTAGMTKSKMATMSRASG ATGATCCAGCAATYCCACTH CATTAGMTDBGAWYCAGMMRTYCCACTH Direction: Forward Position #: 9 Overlap #: 12 Alignment: CATTAGMTKSKMATMSRASG-------- --------ATGATCCAGCAATYCCACTH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 326 Combined Motif Reverse Complement Original Motif HAGTGGKAMYRCTGMWTCVDARCTAATG GACATGGAGTCAAAGG HAGTGGKAMYRCGACATSGARDCWAAKG Direction: Forward Position #: 13 Overlap #: 16 Alignment: HAGTGGKAMYRCTGMWTCVDARCTAATG ------------GACATGGAGTCAAAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 191 Combined Motif Original Motif Original Motif HAGTGGKAMYRCGACATSGARDCWAAKG AAAGTGCCGAGAKTGCAGC HAGTGGKAMYRCRAMRTGSMGASAAWGSAGC Direction: Forward Position #: 13 Overlap #: 16 Alignment: HAGTGGKAMYRCGACATSGARDCWAAKG--- ------------AAAGTGCCGAGAKTGCAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 346 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 346 Motif 303 Reverse Complement Reverse Complement GAGCTTTAAGATTT ACCATCTTTAAGAACT SAKCTTTAAGAWYTAC Direction: Backward Position #: 1 Overlap #: 14 Alignment: --GAGCTTTAAGATTT ACCATCTTTAAGAACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 202 Original Motif Reverse Complement SAKCTTTAAGAWYTAC GAAACTGCTTTGTGATGTGT GAAACTGCWTYKTKAWGWDTTAC Direction: Forward Position #: 8 Overlap #: 13 Alignment: -------SAKCTTTAAGAWYTAC GAAACTGCTTTGTGATGTGT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 224 Combined Motif Reverse Complement Reverse Complement GTAAHWCWTRARKAWGCAGTTTC CAAAGTCTTAACTCATT GTAAHWCWTVAADRTSYWRWYTCATT Direction: Forward Position #: 10 Overlap #: 14 Alignment: GTAAHWCWTRARKAWGCAGTTTC--- ---------CAAAGTCTTAACTCATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 280 Combined Motif Original Motif Reverse Complement GTAAHWCWTVAADRTSYWRWYTCATT ACATCMTCTGAAATCTAGG GTAAHWCWTVAAVATCYTMTBWMATYTAGG Direction: Forward Position #: 12 Overlap #: 15 Alignment: GTAAHWCWTVAADRTSYWRWYTCATT---- -----------ACATCMTCTGAAATCTAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 85 Combined Motif Reverse Complement Original Motif CCTAMATYWBARAKGATVTTVAWGWDTTAC CTAGACATAAAGGTTCTCCA CCTAMATYWBARASKAGAYWBAARDGTTMYCCA Direction: Forward Position #: 14 Overlap #: 17 Alignment: CCTAMATYWBARAKGATVTTVAWGWDTTAC--- -------------CTAGACATAAAGGTTCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 347 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 347 Motif 66 Original Motif Original Motif ACACCTATTCGCACAC ACACACAYACACACACACA ACACMYATWCRCACACACA Direction: Forward Position #: 1 Overlap #: 16 Alignment: ACACCTATTCGCACAC--- ACACACAYACACACACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 294 Original Motif Original Motif ACACMYATWCRCACACACA AGCTGTGAGAAGAGGGCCAC AGCTGTGARMASABRDYCACACACACA Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------ACACMYATWCRCACACACA AGCTGTGAGAAGAGGGCCAC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 290 Combined Motif Reverse Complement Reverse Complement TGTGTGTGTGKHKBTSTYKTCACAGCT CTGTTTGCCTGGGTATCA TGTGTGTGTGKCTGTTTBBYYRSRKMTCA Direction: Forward Position #: 12 Overlap #: 16 Alignment: TGTGTGTGTGKHKBTSTYKTCACAGCT-- -----------CTGTTTGCCTGGGTATCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 225 Combined Motif Reverse Complement Original Motif TGAYRKSKMMBBAAACAGYCACACACACA GCACATGTAYCCYAGAACTT TGAYRKSKMMBBRCACAKGYACMCHMRMACTT Direction: Forward Position #: 13 Overlap #: 17 Alignment: TGAYRKSKMMBBAAACAGYCACACACACA--- ------------GCACATGTAYCCYAGAACTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 70 Combined Motif Original Motif Reverse Complement TGAYRKSKMMBBRCACAKGYACMCHMRMACTT GCAGCAMTATTCACAATAG TGAYRKSKMMBBRCRCAKCHAYAYTCAMAMTWG Direction: Forward Position #: 15 Overlap #: 18 Alignment: TGAYRKSKMMBBRCACAKGYACMCHMRMACTT- --------------GCAGCAMTATTCACAATAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 348 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 348 Motif 192 Original Motif Reverse Complement ATGGCCTATGACYGSTTTG ACAGGCTGTCCCAGGATTC AYRGSCTRTSMCMGGWTTS Direction: Backward Position #: 1 Overlap #: 19 Alignment: ATGGCCTATGACYGSTTTG ACAGGCTGTCCCAGGATTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 280 Combined Motif Reverse Complement Original Motif SAAWCCYGYSAKAGSCKMT CCTAGATTTCAGARGATGT SAAWCCYSCBAGAKTYBAKARGATGT Direction: Forward Position #: 8 Overlap #: 12 Alignment: SAAWCCYGYSAKAGSCKMT------- -------CCTAGATTTCAGARGATGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 196 Combined Motif Reverse Complement Reverse Complement ACATCMTRTBKAYTCTVGSMGGWTTS CAAGCCTSKGCAATGGCAGG ACATCMTRTBKCMWSYCKSDGSAWTGGCAGG Direction: Forward Position #: 12 Overlap #: 15 Alignment: ACATCMTRTBKAYTCTVGSMGGWTTS----- -----------CAAGCCTSKGCAATGGCAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 179 Combined Motif Reverse Complement Original Motif CCTGCCAWTSCDSRGKSWYGYBAKARGATGT AGGTCCTTCAGGAGGTATTC CCTGCCAWTSCDSAGGTHCKTCAGRAGRTRTTC Direction: Forward Position #: 14 Overlap #: 18 Alignment: CCTGCCAWTSCDSRGKSWYGYBAKARGATGT-- -------------AGGTCCTTCAGGAGGTATTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 100 Combined Motif Reverse Complement Original Motif GAAKAKCTKCTGARGDACCTSDGSAWTGGCAGG GCTGGCCCGCAAGCGCCGCG GAAKAKCTKCTGARGBWSSYCBGCAAKSGCMGSG Direction: Forward Position #: 15 Overlap #: 19 Alignment: GAAKAKCTKCTGARGDACCTSDGSAWTGGCAGG- --------------GCTGGCCCGCAAGCGCCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 349 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 349 Motif 165 Original Motif Reverse Complement AGAGCCAAATCATGARTGAA AGCTCMKCCTCCTGTCAGAT AGMKCCRMMTCMTGWSWGAW Direction: Forward Position #: 1 Overlap #: 20 Alignment: AGAGCCAAATCATGARTGAA AGCTCMKCCTCCTGTCAGAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 61 Combined Motif Reverse Complement Reverse Complement WTCWSWCAYGAYYKGGYYCT TGGCTTCACCCAGTGGATCC WTCWSWCATGRCTTSRCCCWGTGGATCC Direction: Forward Position #: 9 Overlap #: 12 Alignment: WTCWSWCAYGAYYKGGYYCT-------- --------TGGCTTCACCCAGTGGATCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 64 Combined Motif Original Motif Reverse Complement WTCWSWCATGRCTTSRCCCWGTGGATCC KCCGGGCCTTAGCTGCCTTC WTCWSWCATGRCTYCGSSCHKTRGMTSCCTTC Direction: Forward Position #: 13 Overlap #: 16 Alignment: WTCWSWCATGRCTTSRCCCWGTGGATCC---- ------------KCCGGGCCTTAGCTGCCTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 155 Combined Motif Original Motif Original Motif WTCWSWCATGRCTYCGSSCHKTRGMTSCCTTC TCCCTCCCGGACGGGGYGGC WTCWSWCATGRCTYYSCCYCYYGGAYGSSKYSGC Direction: Forward Position #: 15 Overlap #: 18 Alignment: WTCWSWCATGRCTYCGSSCHKTRGMTSCCTTC-- --------------TCCCTCCCGGACGGGGYGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 176 Combined Motif Reverse Complement Original Motif GCSMYSSCMTCCMKGMGGSMKAGKCATGWSWGAW AGGCCCCAGTGTSTGTTGTT GCSMYSSCMTCCMKGAGGCCCMRGYRTGTGWKRTT Direction: Forward Position #: 16 Overlap #: 19 Alignment: GCSMYSSCMTCCMKGMGGSMKAGKCATGWSWGAW- ---------------AGGCCCCAGTGTSTGTTGTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 350 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 350 Motif 3 Original Motif Original Motif TCTGGAGTGGACCTCCAGCA GCTGGAGTGCAGTGGCRYGA KCTGGAGTGSASYKSCASSA Direction: Forward Position #: 1 Overlap #: 20 Alignment: TCTGGAGTGGACCTCCAGCA GCTGGAGTGCAGTGGCRYGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 178 Combined Motif Reverse Complement Original Motif TSSTGSYMSTSCACTCCAGR ACTGTCTTCCACCTCCACAT TSSTGSYMVYBSWCTYCMRVCTCCACAT Direction: Forward Position #: 9 Overlap #: 12 Alignment: TSSTGSYMSTSCACTCCAGR-------- --------ACTGTCTTCCACCTCCACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 52 Combined Motif Reverse Complement Reverse Complement ATGTGGAGVMYGMAGWSVMBYKSCASSA GGTGGAGCTGCCTGCCAGTC ATGTGGAGVMYGVRKDGARCTGCCWGCMAGTC Direction: Forward Position #: 13 Overlap #: 16 Alignment: ATGTGGAGVMYGMAGWSVMBYKSCASSA---- ------------GGTGGAGCTGCCTGCCAGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 100 Combined Motif Reverse Complement Original Motif GACTRGCWGGCAGMTCHYMVCMRVCTCCACAT GCTGGCCCGCAAGCGCCGCG GACTRGCWGGCAGMKCTBVCCCGCMWSCRCMKCG Direction: Forward Position #: 15 Overlap #: 18 Alignment: GACTRGCWGGCAGMTCHYMVCMRVCTCCACAT-- --------------GCTGGCCCGCAAGCGCCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 262 Combined Motif Original Motif Original Motif GACTRGCWGGCAGMKCTBVCCCGCMWSCRCMKCG CTCAGTGTTAATCTCCTGTC GACTRGCWGGCAGMKCTCASYSKYAAKCWCCTSKC Direction: Forward Position #: 16 Overlap #: 19 Alignment: GACTRGCWGGCAGMKCTBVCCCGCMWSCRCMKCG- ---------------CTCAGTGTTAATCTCCTGTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 351 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 351 Motif 259 Reverse Complement Original Motif CCCACCCYAAT CCCACACCCTTATTA TACMCACCCTWATCC Direction: Backward Position #: 3 Overlap #: 11 Alignment: --CCCACCCYAAT-- CCCACACCCTTATTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 98 Reverse Complement Original Motif GGATWAGGGTGRGTA AGTTCCGGGTGGGCGTGGG AGTTCCGGRTDRGSGTGGGTA Direction: Forward Position #: 7 Overlap #: 13 Alignment: ------GGATWAGGGTGRGTA AGTTCCGGGTGGGCGTGGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 286 Reverse Complement Reverse Complement TACCCACSCMHAKCCGGAACT CTCCCAGCCGCCTG CTMCCMRCCSCCWGCCGGAACT Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TACCCACSCMHAKCCGGAACT CTCCCAGCCGCCTG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 153 Combined Motif Original Motif Reverse Complement CTMCCMRCCSCCWGCCGGAACT GGCACTCCCTAGTG CTMCCMRCCGSCASYCSSWASTG Direction: Forward Position #: 10 Overlap #: 13 Alignment: CTMCCMRCCSCCWGCCGGAACT- ---------GGCACTCCCTAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 277 Combined Motif Original Motif Reverse Complement CTMCCMRCCGSCASYCSSWASTG GCTTCTGGTGAGGGC CTMCCMRCCGCYWCTSGBKAGKGC Direction: Forward Position #: 10 Overlap #: 14 Alignment: CTMCCMRCCGSCASYCSSWASTG- ---------GCTTCTGGTGAGGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 352 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 352 Motif 246 Reverse Complement Reverse Complement TGAAGATG TCAGGAGTGAAGCTGC TCAGGAGTGAAGMTGC Direction: Forward Position #: 8 Overlap #: 8 Alignment: -------TGAAGATG- TCAGGAGTGAAGCTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 303 Combined Motif Reverse Complement Reverse Complement GCARCTTCACTCCTGA ACCATCTTTAAGAACT GCARCTWCMMTCYTKAAGAACT Direction: Forward Position #: 7 Overlap #: 10 Alignment: GCARCTTCACTCCTGA------ ------ACCATCTTTAAGAACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 227 Combined Motif Original Motif Reverse Complement GCARCTWCMMTCYTKAAGAACT ATTCAASATGAGATTTGGG GCARCTWCMMTYCWARAKRASWTTTGGG Direction: Forward Position #: 10 Overlap #: 13 Alignment: GCARCTWCMMTCYTKAAGAACT------ ---------ATTCAASATGAGATTTGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 280 Combined Motif Reverse Complement Original Motif CCCAAAWSTKYTKTWGMAYYGWAGMTGC CCTAGATTTCAGARGATGT CCCAAAWSTKYTCBTRVATTKHAGAKGMTGT Direction: Forward Position #: 13 Overlap #: 16 Alignment: CCCAAAWSTKYTKTWGMAYYGWAGMTGC--- ------------CCTAGATTTCAGARGATGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 245 Combined Motif Reverse Complement Reverse Complement ACAYCRTCTDRAATVKABGAKRASWTTTGGG TTGAGGAGGCAGTCTG ACAYCRTCTDRAATBGAGGAGGMVDTYTGGG Direction: Forward Position #: 14 Overlap #: 16 Alignment: ACAYCRTCTDRAATVKABGAKRASWTTTGGG -------------TTGAGGAGGCAGTCTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 353 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 353 Motif 225 Reverse Complement Reverse Complement GCTTCCATGTG AAGTTCTKGGKTACATGTGC CGSTTMCATGTGAAGTTCTK Direction: Backward Position #: 2 Overlap #: 11 Alignment: --------GCTTCCATGTG- AAGTTCTKGGKTACATGTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 104 Combined Motif Reverse Complement Reverse Complement YAGAACTTCACATGYAASCG CTCCAGKTMCATCCATGTTG YAGAACTTCWCMWGYWACMKCCATGTTG Direction: Forward Position #: 9 Overlap #: 12 Alignment: YAGAACTTCACATGYAASCG-------- --------CTCCAGKTMCATCCATGTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 235 Combined Motif Reverse Complement Original Motif CAACATGGYYGTWMCWYGWGAAGTTCTK TCCAAATGGGAGAAATTGGC CAACATGGYYGTTCCAWRTGRRRKWMWTTGGC Direction: Forward Position #: 13 Overlap #: 16 Alignment: CAACATGGYYGTWMCWYGWGAAGTTCTK---- ------------TCCAAATGGGAGAAATTGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 310 Combined Motif Original Motif Original Motif CAACATGGYYGTTCCAWRTGRRRKWMWTTGGC CCCATGCAAGTCYRAAATCC CAACATGGYYGTTCCMCATGVAAGTCHKWRRYCC Direction: Forward Position #: 15 Overlap #: 18 Alignment: CAACATGGYYGTTCCAWRTGRRRKWMWTTGGC-- --------------CCCATGCAAGTCYRAAATCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 326 Combined Motif Original Motif Original Motif CAACATGGYYGTTCCMCATGVAAGTCHKWRRYCC GACATGGAGTCAAAGG CAACATGGYYGTTCCVAMWKGRAGTCAAAGRYCC Direction: Forward Position #: 16 Overlap #: 16 Alignment: CAACATGGYYGTTCCMCATGVAAGTCHKWRRYCC ---------------GACATGGAGTCAAAGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 354 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 354 Motif 329 Reverse Complement Original Motif GTCTTTATCAGC GGGAGGGATATATTAGC TTAGCGKSWKKRWYAKM Direction: Backward Position #: 6 Overlap #: 12 Alignment: GTCTTTATCAGC----- GGGAGGGATATATTAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 106 Reverse Complement Original Motif YRTKWKRRWSRCGCTAA ATTGGTGTATTTACAATCCC ATTGGTGTATTTWVAABVCSCTAA Direction: Forward Position #: 8 Overlap #: 13 Alignment: -------YRTKWKRRWSRCGCTAA ATTGGTGTATTTACAATCCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 303 Combined Motif Original Motif Reverse Complement ATTGGTGTATTTWVAABVCSCTAA ACCATCTTTAAGAACT ATTGGTGTATWYVMWMTHYVMKAACT Direction: Forward Position #: 11 Overlap #: 14 Alignment: ATTGGTGTATTTWVAABVCSCTAA-- ----------ACCATCTTTAAGAACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 184 Combined Motif Reverse Complement Original Motif AGTTYYBMHARWYVMWATACACCAAT ATATTGATGATCCTGACC AGTTYYBMHARATATTRWWSAYCMWKACC Direction: Forward Position #: 12 Overlap #: 15 Alignment: AGTTYYBMHARWYVMWATACACCAAT--- -----------ATATTGATGATCCTGACC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 262 Combined Motif Original Motif Reverse Complement AGTTYYBMHARATATTRWWSAYCMWKACC GACAGGAGATTAACACTGAG AGTTYYBMHARAKACWGGAGATYAABACYGAG Direction: Forward Position #: 13 Overlap #: 17 Alignment: AGTTYYBMHARATATTRWWSAYCMWKACC--- ------------GACAGGAGATTAACACTGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 355 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 355 Motif 154 Original Motif Reverse Complement TATGAGCCTGTAA TCCTATGAGAATCTAATG TCYWWKRRSMWKYWAATG Direction: Forward Position #: 3 Overlap #: 13 Alignment: --TATGAGCCTGTAA--- TCCTATGAGAATCTAATG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 275 Combined Motif Original Motif Original Motif TCYWWKRRSMWKYWAATG CTCACAGAGTTAAA TCYWWKRVTCABWDARTKAAA Direction: Forward Position #: 8 Overlap #: 11 Alignment: TCYWWKRRSMWKYWAATG--- -------CTCACAGAGTTAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 184 Combined Motif Original Motif Reverse Complement TCYWWKRVTCABWDARTKAAA GGTCAGGATCATCAATAT TCYWWKRVKSWCAGRATBAWMAATAT Direction: Forward Position #: 9 Overlap #: 13 Alignment: TCYWWKRVTCABWDARTKAAA----- --------GGTCAGGATCATCAATAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 278 Combined Motif Reverse Complement Original Motif ATATTYWTBATKCTGWSYVKYWWMGA ACTTTCAGGCATAACA ATATTYWTBATACTKTCMGGCATARMA Direction: Forward Position #: 12 Overlap #: 15 Alignment: ATATTYWTBATKCTGWSYVKYWWMGA- -----------ACTTTCAGGCATAACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 356 Combined Motif Original Motif Original Motif ATATTYWTBATACTKTCMGGCATARMA AATTAAAAGACACAGACTG ATATTYWTBATAMTTWMARGMMWMAGACTG Direction: Forward Position #: 12 Overlap #: 16 Alignment: ATATTYWTBATACTKTCMGGCATARMA--- -----------AATTAAAAGACACAGACTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 356 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 356 Motif 333 Original Motif Original Motif AATTAAAAGACACAGACTG TAGATAATAGCTCCAGCTTT TARWTAAWAGMYMCAGMYTK Direction: Forward Position #: 2 Overlap #: 19 Alignment: -AATTAAAAGACACAGACTG TAGATAATAGCTCCAGCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 357 Combined Motif Reverse Complement Reverse Complement YAKRCTGRMRCTWTTAWMTA TAATTTTATGTGTCAACTTG YAKRCTGRHAMTWTTAWVTRTCAACTTG Direction: Forward Position #: 9 Overlap #: 12 Alignment: YAKRCTGRMRCTWTTAWMTA-------- --------TAATTTTATGTGTCAACTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 232 Combined Motif Reverse Complement Reverse Complement CAAGTTGAKAVWTAAWARTHMCAGMYTK AAGTCTCCCAATTACAACT CAAGTTGAKAVWWARTMKYCCMAKHMYDACT Direction: Forward Position #: 13 Overlap #: 16 Alignment: CAAGTTGAKAVWTAAWARTHMCAGMYTK--- ------------AAGTCTCCCAATTACAACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 109 Combined Motif Reverse Complement Reverse Complement AGTDKYHRTYGGKRYAMTWWVTRTCAACTTG TCTCTCTCTCTCTCTCTCTC AGTDKYHRTYGGKWCWMTHTCTVTCWMYYTSTC Direction: Forward Position #: 14 Overlap #: 18 Alignment: AGTDKYHRTYGGKRYAMTWWVTRTCAACTTG-- -------------TCTCTCTCTCTCTCTCTCTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 336 Combined Motif Reverse Complement Original Motif GASAMKYWGAVAGADARWGWYCCMAKHMYDACT ATGTAACCAAAYACCACCTG GASAMKYWGAVAGAAWGTRACCMAABACCAMCTG Direction: Forward Position #: 15 Overlap #: 19 Alignment: GASAMKYWGAVAGADARWGWYCCMAKHMYDACT- --------------ATGTAACCAAAYACCACCTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 357 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 357 Motif 202 Reverse Complement Reverse Complement TAATTTTATGTGTCAACTTG GAAACTGCTTTGTGATGTGT KAAWYTKMTKTGTSAWSTKK Direction: Forward Position #: 1 Overlap #: 20 Alignment: TAATTTTATGTGTCAACTTG GAAACTGCTTTGTGATGTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 137 Combined Motif Original Motif Reverse Complement KAAWYTKMTKTGTSAWSTKK TWTACCTATGTAACAAACCT KAAWYTKMTWTRYCWABKTDACAAACCT Direction: Forward Position #: 9 Overlap #: 12 Alignment: KAAWYTKMTKTGTSAWSTKK-------- --------TWTACCTATGTAACAAACCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 194 Combined Motif Reverse Complement Reverse Complement AGGTTTGTDARVTWGMKAWARYAKWTTY CAGCTACTCKTATACCCTTG AGGTTTGTDARVYAGCTAHWVBWATWYCCTTG Direction: Forward Position #: 13 Overlap #: 16 Alignment: AGGTTTGTDARVTWGMKAWARYAKWTTY---- ------------CAGCTACTCKTATACCCTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 308 Combined Motif Original Motif Reverse Complement AGGTTTGTDARVYAGCTAHWVBWATWYCCTTG GTTATTAATTGGCCTAATTT AGGTTTGTDARVYAGYTATTAHTTKDCCYWWKTT Direction: Forward Position #: 15 Overlap #: 18 Alignment: AGGTTTGTDARVYAGCTAHWVBWATWYCCTTG-- --------------GTTATTAATTGGCCTAATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 63 Combined Motif Original Motif Original Motif AGGTTTGTDARVYAGYTATTAHTTKDCCYWWKTT AGTGAGAACATRYRRTRTTT AGGTTTGTDARVYAGAKWKWRAWYATVCBDTGTTT Direction: Forward Position #: 16 Overlap #: 19 Alignment: AGGTTTGTDARVYAGYTATTAHTTKDCCYWWKTT- ---------------AGTGAGAACATRYRRTRTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 358 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 358 Motif 1 Original Motif Reverse Complement CGTCCATCACCCC BCVTCTGTCACCCC CCSWYCWKYMMCCC Direction: Backward Position #: 2 Overlap #: 13 Alignment: CGTCCATCACCCC- BCVTCTGTCACCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 53 Reverse Complement Reverse Complement GGGRYKRWGKWSGG CTTGGGTGGTCGATGGGAC CTTGGGKGGTBGAKGGGRS Direction: Forward Position #: 6 Overlap #: 14 Alignment: -----GGGRYKRWGKWSGG CTTGGGTGGTCGATGGGAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 341 Combined Motif Reverse Complement Original Motif SKCCCRTCBACCYCCCAAG ATCCATCCATCCATCCA SKCCCRTMTMCMTCCMWMSATCCA Direction: Forward Position #: 8 Overlap #: 12 Alignment: SKCCCRTCBACCYCCCAAG----- -------ATCCATCCATCCATCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 178 Combined Motif Original Motif Original Motif SKCCCRTMTMCMTCCMWMSATCCA ACTGTCTTCCACCTCCACAT SKCCCRTMTMMCTSYCTYCMWCCWCCACAT Direction: Forward Position #: 11 Overlap #: 14 Alignment: SKCCCRTMTMCMTCCMWMSATCCA------ ----------ACTGTCTTCCACCTCCACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 111 Combined Motif Reverse Complement Original Motif ATGTGGWGGWYGMAGKSAGYRAYAKGGGRS AGGAGCCCCTCHGCCCR ATGTGGWGGWYGMAGGRRSCVHTMBGSSMV Direction: Forward Position #: 14 Overlap #: 17 Alignment: ATGTGGWGGWYGMAGKSAGYRAYAKGGGRS -------------AGGAGCCCCTCHGCCCR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 359 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 359 Motif 61 Reverse Complement Original Motif SGTGACGTCA GGATCCACTGGGTGAAGCCA GGWKMCRYYRGGTGAAGCCA Direction: Forward Position #: 1 Overlap #: 10 Alignment: SGTGACGTCA---------- GGATCCACTGGGTGAAGCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 279 Combined Motif Original Motif Reverse Complement GGWKMCRYYRGGTGAAGCCA MGTGTGATGTCTCCCCC GGWKMCRYCRKGTGAWGYCWCCCCC Direction: Forward Position #: 9 Overlap #: 12 Alignment: GGWKMCRYYRGGTGAAGCCA----- --------MGTGTGATGTCTCCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 291 Combined Motif Original Motif Reverse Complement GGWKMCRYCRKGTGAWGYCWCCCCC TAMGACCTCAGGTCCTCAG GGWKMCRYCRTRYGAHSTCASSYCCTCAG Direction: Forward Position #: 11 Overlap #: 15 Alignment: GGWKMCRYCRKGTGAWGYCWCCCCC---- ----------TAMGACCTCAGGTCCTCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 316 Combined Motif Original Motif Reverse Complement GGWKMCRYCRTRYGAHSTCASSYCCTCAG ACGTCACTTCCG GGWKMCRYCRTRHSRTCWCWBCCSCTCAG Direction: Forward Position #: 13 Overlap #: 12 Alignment: GGWKMCRYCRTRYGAHSTCASSYCCTCAG ------------ACGTCACTTCCG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 60 Combined Motif Reverse Complement Reverse Complement CTGAGSGGVWGWGAMSHMAMGMMGYYWCC CTCCTGACCTCGTGATC CTGAGSGGVWGWSWCCTVACSHMGTBAYC Direction: Forward Position #: 13 Overlap #: 17 Alignment: CTGAGSGGVWGWGAMSHMAMGMMGYYWCC ------------CTCCTGACCTCGTGATC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 360 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 360 Motif 193 Original Motif Original Motif CAATGGGGTG ATACAATGGGGGTACAGRC ATACAATGGGGKKACAGRC Direction: Forward Position #: 4 Overlap #: 10 Alignment: ---CAATGGGGTG------ ATACAATGGGGGTACAGRC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 284 Combined Motif Original Motif Original Motif ATACAATGGGGKKACAGRC CATTTGGGAGCCCATTGA ATACAATSRKKTGRSAGMCCATTGA Direction: Forward Position #: 8 Overlap #: 12 Alignment: ATACAATGGGGKKACAGRC------ -------CATTTGGGAGCCCATTGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 242 Combined Motif Reverse Complement Reverse Complement TCAATGGRCTSKCAYRKSATTGTAT CMCAGTTCACAATAGGGTT TCAATGGRCTSHCABDTCAYWRTAKGGTT Direction: Forward Position #: 11 Overlap #: 15 Alignment: TCAATGGRCTSKCAYRKSATTGTAT---- ----------CMCAGTTCACAATAGGGTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 23 Combined Motif Reverse Complement Reverse Complement AACCYTAMWKTGADBTGHSAGMCCATTGA ACTCCCTAGTGAGATGAACC AACCYTAMWKTGAHTYSCKAGTSMRWTGAACC Direction: Forward Position #: 13 Overlap #: 17 Alignment: AACCYTAMWKTGADBTGHSAGMCCATTGA--- ------------ACTCCCTAGTGAGATGAACC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 321 Combined Motif Original Motif Reverse Complement AACCYTAMWKTGAHTYSCKAGTSMRWTGAACC GCTCCACCCAGTTCGAGCTT AACCYTAMWKTGAHKCBCCASCCAGTTSRASCTT Direction: Forward Position #: 15 Overlap #: 18 Alignment: AACCYTAMWKTGAHTYSCKAGTSMRWTGAACC-- --------------GCTCCACCCAGTTCGAGCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 361 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 361 Motif 291 Reverse Complement Reverse Complement GAACTCCTGACCT TAMGACCTCAGGTCCTCAG CAGGAMCTCMKGWCCTTAM Direction: Backward Position #: 4 Overlap #: 13 Alignment: ---GAACTCCTGACCT--- TAMGACCTCAGGTCCTCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 234 Original Motif Reverse Complement CAGGAMCTCMKGWCCTTAM GTGTCKGGAGTTTGTTCCTT GTGTCKGGMRKKWVYTCCTKWCCTTAM Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------CAGGAMCTCMKGWCCTTAM GTGTCKGGAGTTTGTTCCTT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 99 Combined Motif Reverse Complement Reverse Complement RTAAGGWYAGGAMVWYYKYCCRGACAC AATGAKATCATGTCYTTTGC RTAAGGWYAGGAABDHBDTCHWGWCHYTTGC Direction: Forward Position #: 12 Overlap #: 16 Alignment: RTAAGGWYAGGAMVWYYKYCCRGACAC---- -----------AATGAKATCATGTCYTTTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 72 Combined Motif Reverse Complement Original Motif GCAAMHGWCWDGADVHDVTTCCTKWCCTTAM CGCACTCCTCAGCC GCAAMHGWCWDGAHGCACTYCYYRGCCTTAM Direction: Forward Position #: 14 Overlap #: 14 Alignment: GCAAMHGWCWDGADVHDVTTCCTKWCCTTAM -------------CGCACTCCTCAGCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Original Motif Original Motif GCAAMHGWCWDGAHGCACTYCYYRGCCTTAM GAAAGGGAACTCCCTGACCC GCAAMHGWCWDGAGAMAGKSMAYTSCCTKACCC Direction: Forward Position #: 14 Overlap #: 18 Alignment: GCAAMHGWCWDGAHGCACTYCYYRGCCTTAM-- -------------GAAAGGGAACTCCCTGACCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 362 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 362 Motif 10 Original Motif Reverse Complement GCTCTGAAGGTCC MCCYGGCWSMGASGSTCCT MSCTSKSWARGWCSSTCCT Direction: Forward Position #: 2 Overlap #: 13 Alignment: -GCTCTGAAGGTCC----- MCCYGGCWSMGASGSTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 179 Reverse Complement Original Motif AGGASSGWCMTWSRSAGSY AGGTCCTTCAGGAGGTATTC AGGTCCTTMRGRMGGTMHTYSRSAGSY Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------AGGASSGWCMTWSRSAGSY AGGTCCTTCAGGAGGTATTC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 312 Combined Motif Reverse Complement Reverse Complement MSCTSKSMAHRACCYKCMYAAGGACCT CCCMKGGCACCCTCAGTCCT MSCTSKSMAHRMCCHKSVCAMSSWCMKTCCT Direction: Forward Position #: 12 Overlap #: 16 Alignment: MSCTSKSMAHRACCYKCMYAAGGACCT---- -----------CCCMKGGCACCCTCAGTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 60 Combined Motif Reverse Complement Reverse Complement AGGARYGWSSYTGVSYDGGRMHTYSRSAGSY CTCCTGACCTCGTGATC AGGARYGWSSYTGCTCVKGACCTCGDGAKCY Direction: Forward Position #: 14 Overlap #: 17 Alignment: AGGARYGWSSYTGVSYDGGRMHTYSRSAGSY -------------CTCCTGACCTCGTGATC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 215 Combined Motif Reverse Complement Reverse Complement MGRTCDCGAGGTCRVGAGCAMSSWCMKTCCT GGGRSCACAGGAGCD MGRTCDCGAGGTCGGGRGCACVGDMVYTCCT Direction: Forward Position #: 14 Overlap #: 15 Alignment: MGRTCDCGAGGTCRVGAGCAMSSWCMKTCCT -------------GGGRSCACAGGAGCD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 363 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 363 Motif 227 Original Motif Reverse Complement CAAGGTCTGATTGTW ATTCAASATGAGATTTGGG GGGYWMRRKMTGAKWKTTA Direction: Backward Position #: 4 Overlap #: 15 Alignment: -CAAGGTCTGATTGTW--- ATTCAASATGAGATTTGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 119 Original Motif Original Motif GGGYWMRRKMTGAKWKTTA AAGTCCAAGATCAAGGTGYY AAGTCCAAGRKCAAGGTVTSAKWKTTA Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------GGGYWMRRKMTGAKWKTTA AAGTCCAAGATCAAGGTGYY------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 224 Combined Motif Original Motif Reverse Complement AAGTCCAAGRKCAAGGTVTSAKWKTTA CAAAGTCTTAACTCATT AAGTCCAAGRKCAAAGTCTTADHTYWWT Direction: Forward Position #: 12 Overlap #: 16 Alignment: AAGTCCAAGRKCAAGGTVTSAKWKTTA- -----------CAAAGTCTTAACTCATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 349 Combined Motif Original Motif Original Motif AAGTCCAAGRKCAAAGTCTTADHTYWWT AGAGCCAAATCATGARTGAA AAGTCCAAGRKCARAGYCWWATCWTRAKTGAA Direction: Forward Position #: 13 Overlap #: 16 Alignment: AAGTCCAAGRKCAAAGTCTTADHTYWWT---- ------------AGAGCCAAATCATGARTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 129 Combined Motif Reverse Complement Original Motif TTCARTMAWGATWWGKCTMTGRMCTTGGACTT AAGAGGTTTAATTGRCTCA TTCARTMAWGATWWRRSWGKKTTMWTKGACTYA Direction: Forward Position #: 15 Overlap #: 18 Alignment: TTCARTMAWGATWWGKCTMTGRMCTTGGACTT- --------------AAGAGGTTTAATTGRCTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 364 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 364 Motif 350 Reverse Complement Reverse Complement MGTTCAAATCC TGCTGGAGGTCCACTCCAGA AGAAGKTCMAMTCCTGCTGG Direction: Backward Position #: 4 Overlap #: 11 Alignment: ------MGTTCAAATCC--- TGCTGGAGGTCCACTCCAGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 214 Combined Motif Reverse Complement Reverse Complement CCAGCAGGARTRGARCTTCT GGTTTTCCATTCCTGAG CCAGCAGGRGTKKWMCWTYYCTGAG Direction: Forward Position #: 9 Overlap #: 12 Alignment: CCAGCAGGARTRGARCTTCT----- --------GGTTTTCCATTCCTGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 322 Combined Motif Original Motif Original Motif CCAGCAGGRGTKKWMCWTYYCTGAG AGGGCCTTTGCASWTGC CCAGCAGGRGWGGDCCTTTGCWSAKGC Direction: Forward Position #: 11 Overlap #: 15 Alignment: CCAGCAGGRGTKKWMCWTYYCTGAG-- ----------AGGGCCTTTGCASWTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 106 Combined Motif Original Motif Reverse Complement CCAGCAGGRGWGGDCCTTTGCWSAKGC GGGATTGTAAATACACCAAT CCAGCAGGRGWGGGMYTKTVMAKASRCCAAT Direction: Forward Position #: 12 Overlap #: 16 Alignment: CCAGCAGGRGWGGDCCTTTGCWSAKGC---- -----------GGGATTGTAAATACACCAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 23 Combined Motif Reverse Complement Original Motif ATTGGKSTRTRBAYAMYCCCWCMCCTGCTGG GGTTCATCTCACTAGGGAGT ATTGGKSTRTRBABRHTCMYMYCMCTRSKGRGT Direction: Forward Position #: 14 Overlap #: 18 Alignment: ATTGGKSTRTRBAYAMYCCCWCMCCTGCTGG-- -------------GGTTCATCTCACTAGGGAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 365 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 365 Motif 62 Original Motif Original Motif AGCTCCGGTCTAC AGGAACAGCTCCRGTCTAC AGGAACAGCTCCRGTCTAC Direction: Forward Position #: 7 Overlap #: 13 Alignment: ------AGCTCCGGTCTAC AGGAACAGCTCCRGTCTAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 291 Combined Motif Reverse Complement Reverse Complement GTAGACMGGAGCTGTTCCT TAMGACCTCAGGTCCTCAG GTAGACMKRAGMYSTYMSKTCCTCAG Direction: Forward Position #: 8 Overlap #: 12 Alignment: GTAGACMGGAGCTGTTCCT------- -------TAMGACCTCAGGTCCTCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 273 Combined Motif Reverse Complement Reverse Complement CTGAGGAYSRMASMRCTMRRGTCTAC GTAGGCCTAGGCT CTGAGGAYSRMRTAGSYCWAGKCTAC Direction: Forward Position #: 12 Overlap #: 13 Alignment: CTGAGGAYSRMASMRCTMRRGTCTAC -----------GTAGGCCTAGGCT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 225 Combined Motif Reverse Complement Original Motif GTAGRCTWGKSCTAMYMSKTCCTCAG GCACATGTAYCCYAGAACTT GTAGRCTWGKSSYACHYGTWCCYCAGAACTT Direction: Forward Position #: 12 Overlap #: 15 Alignment: GTAGRCTWGKSCTAMYMSKTCCTCAG----- -----------GCACATGTAYCCYAGAACTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 177 Combined Motif Original Motif Reverse Complement GTAGRCTWGKSSYACHYGTWCCYCAGAACTT ACCGAGMKMGCAGCTTCGGG GTAGRCTWGKSSYACMBRKHBCBCAGMWYYKGG Direction: Forward Position #: 14 Overlap #: 18 Alignment: GTAGRCTWGKSSYACHYGTWCCYCAGAACTT-- -------------ACCGAGMKMGCAGCTTCGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 03-28-2023 08:14:22 Runtime: 573.345 seconds MOTIFSIM is written by Ngoc Tam L. 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