MOTIFSIM - MOTIF SIMilarity Detection Tool
Version 2.2
INPUT
Input Parameters
| Number of files: |
1 |
| Number of top significant motifs: |
4 |
| Number of best matches: |
4 |
| Similarity cutoff >= |
0.5 |
| Matching motif database: |
Jaspar Core |
| Motif tree: |
Yes |
| Combined similar motifs: |
No |
| Output file type: |
All |
| Output file format: |
All |
Input files and motif counts
| File name |
Count of motifs |
Dataset number |
| U20240419_R_04-19-24_1712_InsertFile1.txt |
3 |
1 |
RESULTS
Top 4 Significant Motifs - Global Matching (Highest to Lowest)
There is no global matching for 1 motif file.
Significant Motifs - Global and Local Matching (Highest to Lowest)
| Dataset #: 1 |
Motif ID: 2 |
Motif name: Motif 2 |
| Original motif Consensus sequence: AGCGCCVCCTR |
Reverse complement motif Consensus sequence: KAGGVGGCGCT |
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|
 |
 |
Best Matches for Significant Motif ID 2 (Highest to Lowest)
| Dataset #: |
1 |
| Motif ID: |
3 |
| Motif name: |
Motif 3 |
| Matching format of first motif: |
Original Motif |
| Matching format of second motif: |
Original Motif |
| Direction: |
Forward |
| Position number: |
1 |
| Number of overlap: |
11 |
| Similarity score: |
0 |
Alignment:
AGCGCCVCCTR
AGCGCCVCCTR
| Original motif Consensus sequence: AGCGCCVCCTR |
Reverse complement motif Consensus sequence: KAGGVGGCGCT |
|
|
 |
 |
| Dataset #: |
1 |
| Motif ID: |
1 |
| Motif name: |
Motif 1 |
| Matching format of first motif: |
Original Motif |
| Matching format of second motif: |
Original Motif |
| Direction: |
Backward |
| Position number: |
1 |
| Number of overlap: |
11 |
| Similarity score: |
0.120204 |
Alignment:
AGATGGCGCTATWHM
----AGCGCCVCCTR
| Original motif Consensus sequence: AGATGGCGCTATWHM |
Reverse complement motif Consensus sequence: RDWATAGCGCCATCT |
|
|
 |
 |
| Dataset #: 1 |
Motif ID: 3 |
Motif name: Motif 3 |
| Original motif Consensus sequence: AGCGCCVCCTR |
Reverse complement motif Consensus sequence: KAGGVGGCGCT |
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|
| |
|
Best Matches for Significant Motif ID 3 (Highest to Lowest)
| Dataset #: |
1 |
| Motif ID: |
2 |
| Motif name: |
Motif 2 |
| Matching format of first motif: |
Original Motif |
| Matching format of second motif: |
Original Motif |
| Direction: |
Forward |
| Position number: |
1 |
| Number of overlap: |
11 |
| Similarity score: |
0 |
Alignment:
AGCGCCVCCTR
AGCGCCVCCTR
| Original motif Consensus sequence: AGCGCCVCCTR |
Reverse complement motif Consensus sequence: KAGGVGGCGCT |
|
|
| |
|
| Dataset #: |
1 |
| Motif ID: |
1 |
| Motif name: |
Motif 1 |
| Matching format of first motif: |
Original Motif |
| Matching format of second motif: |
Original Motif |
| Direction: |
Backward |
| Position number: |
1 |
| Number of overlap: |
11 |
| Similarity score: |
0.120204 |
Alignment:
AGATGGCGCTATWHM
----AGCGCCVCCTR
| Original motif Consensus sequence: AGATGGCGCTATWHM |
Reverse complement motif Consensus sequence: RDWATAGCGCCATCT |
|
|
| |
|
| Dataset #: 1 |
Motif ID: 1 |
Motif name: Motif 1 |
| Original motif Consensus sequence: AGATGGCGCTATWHM |
Reverse complement motif Consensus sequence: RDWATAGCGCCATCT |
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|
| |
|
Best Matches for Significant Motif ID 1 (Highest to Lowest)
| Dataset #: |
1 |
| Motif ID: |
2 |
| Motif name: |
Motif 2 |
| Matching format of first motif: |
Original Motif |
| Matching format of second motif: |
Original Motif |
| Direction: |
Backward |
| Position number: |
1 |
| Number of overlap: |
11 |
| Similarity score: |
0.0742905 |
Alignment:
----AGCGCCVCCTR
AGATGGCGCTATWHM
| Original motif Consensus sequence: AGCGCCVCCTR |
Reverse complement motif Consensus sequence: KAGGVGGCGCT |
|
|
| |
|
| Dataset #: |
1 |
| Motif ID: |
3 |
| Motif name: |
Motif 3 |
| Matching format of first motif: |
Original Motif |
| Matching format of second motif: |
Original Motif |
| Direction: |
Backward |
| Position number: |
1 |
| Number of overlap: |
11 |
| Similarity score: |
0.0742905 |
Alignment:
----AGCGCCVCCTR
AGATGGCGCTATWHM
| Original motif Consensus sequence: AGCGCCVCCTR |
Reverse complement motif Consensus sequence: KAGGVGGCGCT |
|
|
| |
|
Best Matches for Each Motif (Highest to Lowest)
| Dataset #: 1 |
Motif ID: 1 |
Motif name: Motif 1 |
| Original motif Consensus sequence: AGATGGCGCTATWHM |
Reverse complement motif Consensus sequence: RDWATAGCGCCATCT |
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|
| |
|
Best Matches for Motif ID 1 (Highest to Lowest)
| Dataset #: |
1 |
| Motif ID: |
2 |
| Motif name: |
Motif 2 |
| Matching format of first motif: |
Original Motif |
| Matching format of second motif: |
Original Motif |
| Direction: |
Backward |
| Position number: |
1 |
| Number of overlap: |
11 |
| Similarity score: |
0.0742905 |
Alignment:
----AGCGCCVCCTR
AGATGGCGCTATWHM
| Original motif Consensus sequence: AGCGCCVCCTR |
Reverse complement motif Consensus sequence: KAGGVGGCGCT |
|
|
| |
|
| Dataset #: |
1 |
| Motif ID: |
3 |
| Motif name: |
Motif 3 |
| Matching format of first motif: |
Original Motif |
| Matching format of second motif: |
Original Motif |
| Direction: |
Backward |
| Position number: |
1 |
| Number of overlap: |
11 |
| Similarity score: |
0.0742905 |
Alignment:
----AGCGCCVCCTR
AGATGGCGCTATWHM
| Original motif Consensus sequence: AGCGCCVCCTR |
Reverse complement motif Consensus sequence: KAGGVGGCGCT |
|
|
| |
|
| Dataset #: 1 |
Motif ID: 2 |
Motif name: Motif 2 |
| Original motif Consensus sequence: AGCGCCVCCTR |
Reverse complement motif Consensus sequence: KAGGVGGCGCT |
|
|
| |
|
Best Matches for Motif ID 2 (Highest to Lowest)
| Dataset #: |
1 |
| Motif ID: |
3 |
| Motif name: |
Motif 3 |
| Matching format of first motif: |
Original Motif |
| Matching format of second motif: |
Original Motif |
| Direction: |
Forward |
| Position number: |
1 |
| Number of overlap: |
11 |
| Similarity score: |
0 |
Alignment:
AGCGCCVCCTR
AGCGCCVCCTR
| Original motif Consensus sequence: AGCGCCVCCTR |
Reverse complement motif Consensus sequence: KAGGVGGCGCT |
|
|
| |
|
| Dataset #: |
1 |
| Motif ID: |
1 |
| Motif name: |
Motif 1 |
| Matching format of first motif: |
Original Motif |
| Matching format of second motif: |
Original Motif |
| Direction: |
Backward |
| Position number: |
1 |
| Number of overlap: |
11 |
| Similarity score: |
0.120204 |
Alignment:
AGATGGCGCTATWHM
----AGCGCCVCCTR
| Original motif Consensus sequence: AGATGGCGCTATWHM |
Reverse complement motif Consensus sequence: RDWATAGCGCCATCT |
|
|
| |
|
| Dataset #: 1 |
Motif ID: 3 |
Motif name: Motif 3 |
| Original motif Consensus sequence: AGCGCCVCCTR |
Reverse complement motif Consensus sequence: KAGGVGGCGCT |
|
|
| |
|
Best Matches for Motif ID 3 (Highest to Lowest)
| Dataset #: |
1 |
| Motif ID: |
2 |
| Motif name: |
Motif 2 |
| Matching format of first motif: |
Original Motif |
| Matching format of second motif: |
Original Motif |
| Direction: |
Forward |
| Position number: |
1 |
| Number of overlap: |
11 |
| Similarity score: |
0 |
Alignment:
AGCGCCVCCTR
AGCGCCVCCTR
| Original motif Consensus sequence: AGCGCCVCCTR |
Reverse complement motif Consensus sequence: KAGGVGGCGCT |
|
|
| |
|
| Dataset #: |
1 |
| Motif ID: |
1 |
| Motif name: |
Motif 1 |
| Matching format of first motif: |
Original Motif |
| Matching format of second motif: |
Original Motif |
| Direction: |
Backward |
| Position number: |
1 |
| Number of overlap: |
11 |
| Similarity score: |
0.120204 |
Alignment:
AGATGGCGCTATWHM
----AGCGCCVCCTR
| Original motif Consensus sequence: AGATGGCGCTATWHM |
Reverse complement motif Consensus sequence: RDWATAGCGCCATCT |
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| |
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Results created by MOTIFSIM on 04-19-2024 14:13:07
Runtime: 532.394 seconds
MOTIFSIM is written by Ngoc Tam L. Tran
Motif logo generated by weblogo