**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 1 Number of top significant motifs: 4 Number of best matches: 4 Similarity cutoff: >= 0.5 Matching motif database: Jaspar Core Motif tree: Yes Combined similar motifs: No Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # U20240419_R_04-19-24_1712_InsertFile1.txt 3 1 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** **************************************************************************************************************************************************************************************************** ****************************************************************** Top 4 Significant Motifs - Global Matching (Highest to Lowest) ****************************************************************** There is no global matching for 1 motif file. **************************************************************************************************************************************************************************************************** **************************************************************** Significant Motifs - Global and Local Matching (Highest to Lowest) **************************************************************** Dataset #: 1 Motif ID: 2 Motif name: Motif 2 Consensus sequence (original motif): AGCGCCVCCTR Consensus sequence (reverse complement motif): KAGGVGGCGCT ************************************************************** Best Matches for Significant Motif ID 2 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 Motif 3 Original Motif Original Motif Forward 1 11 0 Consensus sequence (original motif): AGCGCCVCCTR Consensus sequence (reverse complement motif): KAGGVGGCGCT Alignment: AGCGCCVCCTR AGCGCCVCCTR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 Motif 1 Original Motif Original Motif Backward 1 11 0.120204 Consensus sequence (original motif): AGATGGCGCTATWHM Consensus sequence (reverse complement motif): RDWATAGCGCCATCT Alignment: AGATGGCGCTATWHM ----AGCGCCVCCTR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 3 Motif name: Motif 3 Consensus sequence (original motif): AGCGCCVCCTR Consensus sequence (reverse complement motif): KAGGVGGCGCT ************************************************************** Best Matches for Significant Motif ID 3 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 Motif 2 Original Motif Original Motif Forward 1 11 0 Consensus sequence (original motif): AGCGCCVCCTR Consensus sequence (reverse complement motif): KAGGVGGCGCT Alignment: AGCGCCVCCTR AGCGCCVCCTR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 Motif 1 Original Motif Original Motif Backward 1 11 0.120204 Consensus sequence (original motif): AGATGGCGCTATWHM Consensus sequence (reverse complement motif): RDWATAGCGCCATCT Alignment: AGATGGCGCTATWHM ----AGCGCCVCCTR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 1 Motif name: Motif 1 Consensus sequence (original motif): AGATGGCGCTATWHM Consensus sequence (reverse complement motif): RDWATAGCGCCATCT ************************************************************** Best Matches for Significant Motif ID 1 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 Motif 2 Original Motif Original Motif Backward 1 11 0.0742905 Consensus sequence (original motif): AGCGCCVCCTR Consensus sequence (reverse complement motif): KAGGVGGCGCT Alignment: ----AGCGCCVCCTR AGATGGCGCTATWHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 Motif 3 Original Motif Original Motif Backward 1 11 0.0742905 Consensus sequence (original motif): AGCGCCVCCTR Consensus sequence (reverse complement motif): KAGGVGGCGCT Alignment: ----AGCGCCVCCTR AGATGGCGCTATWHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- **************************************************************************************************************************************************************************************************** ********************************************************************** Best Matches for Each Motif (Highest to Lowest) ***************************************************************************** Dataset #: 1 Motif ID: 1 Motif name: Motif 1 Consensus sequence (original motif): AGATGGCGCTATWHM Consensus sequence (reverse complement motif): RDWATAGCGCCATCT ************************************************************************ Best Matches for Motif ID 1 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 Motif 2 Original Motif Original Motif Backward 1 11 0.0742905 Consensus sequence (original motif): AGCGCCVCCTR Consensus sequence (reverse complement motif): KAGGVGGCGCT Alignment: ----AGCGCCVCCTR AGATGGCGCTATWHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 Motif 3 Original Motif Original Motif Backward 1 11 0.0742905 Consensus sequence (original motif): AGCGCCVCCTR Consensus sequence (reverse complement motif): KAGGVGGCGCT Alignment: ----AGCGCCVCCTR AGATGGCGCTATWHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 2 Motif name: Motif 2 Consensus sequence (original motif): AGCGCCVCCTR Consensus sequence (reverse complement motif): KAGGVGGCGCT ************************************************************************ Best Matches for Motif ID 2 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 Motif 3 Original Motif Original Motif Forward 1 11 0 Consensus sequence (original motif): AGCGCCVCCTR Consensus sequence (reverse complement motif): KAGGVGGCGCT Alignment: AGCGCCVCCTR AGCGCCVCCTR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 Motif 1 Original Motif Original Motif Backward 1 11 0.120204 Consensus sequence (original motif): AGATGGCGCTATWHM Consensus sequence (reverse complement motif): RDWATAGCGCCATCT Alignment: AGATGGCGCTATWHM ----AGCGCCVCCTR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 3 Motif name: Motif 3 Consensus sequence (original motif): AGCGCCVCCTR Consensus sequence (reverse complement motif): KAGGVGGCGCT ************************************************************************ Best Matches for Motif ID 3 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 Motif 2 Original Motif Original Motif Forward 1 11 0 Consensus sequence (original motif): AGCGCCVCCTR Consensus sequence (reverse complement motif): KAGGVGGCGCT Alignment: AGCGCCVCCTR AGCGCCVCCTR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 Motif 1 Original Motif Original Motif Backward 1 11 0.120204 Consensus sequence (original motif): AGATGGCGCTATWHM Consensus sequence (reverse complement motif): RDWATAGCGCCATCT Alignment: AGATGGCGCTATWHM ----AGCGCCVCCTR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 04-19-2024 14:13:07 Runtime: 532.394 seconds MOTIFSIM is written by Ngoc Tam L. 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