Best Matches in Database for Each Motif (Highest to Lowest)
| Dataset #: 1 | Motif ID: 1 | Motif name: Motif 1 |
| Original motif | Reverse complement motif |
| Consensus sequence: GGCGGGGC | Consensus sequence: GCCCCGCC |
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Best Matches for Motif ID 1 (Highest to Lowest)
| Motif ID: | UP00093 |
| Motif name: | Klf7_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 6 |
| Number of overlap: | 8 |
| Similarity score: | 0 |
Alignment:
HBDRCCMCGCCCHHHD
---GCCCCGCC-----
| Original motif | Reverse complement motif |
| Consensus sequence: HBDRCCMCGCCCHHHD | Consensus sequence: DHHDGGGCGRGGKHBH |
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| Motif ID: | UP00000 |
| Motif name: | Smad3_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 7 |
| Number of overlap: | 8 |
| Similarity score: | 0.00617043 |
Alignment:
BHBHDTGGCGGGGBDHD
------GGCGGGGC---
| Original motif | Reverse complement motif |
| Consensus sequence: DHHBCCCCGCCAHHBHB | Consensus sequence: BHBHDTGGCGGGGBDHD |
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| Motif ID: | UP00002 |
| Motif name: | Sp4_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 5 |
| Number of overlap: | 8 |
| Similarity score: | 0.0145996 |
Alignment:
BDWAGGCGTGBCHHD
----GGCGGGGC---
| Original motif | Reverse complement motif |
| Consensus sequence: BDWAGGCGTGBCHHD | Consensus sequence: HHDGBCACGCCTWDB |
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| Motif ID: | UP00002 |
| Motif name: | Sp4_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 2 |
| Number of overlap: | 8 |
| Similarity score: | 0.0233506 |
Alignment:
BDHHMCGCCCCCTHVBB
-GCCCCGCC--------
| Original motif | Reverse complement motif |
| Consensus sequence: BDHHMCGCCCCCTHVBB | Consensus sequence: BVVHAGGGGGCGRDHHB |
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| Motif ID: | UP00024 |
| Motif name: | Glis2_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 5 |
| Number of overlap: | 8 |
| Similarity score: | 0.0291232 |
Alignment:
HHHVGACCCCCCVBRD
----GCCCCGCC----
| Original motif | Reverse complement motif |
| Consensus sequence: HHHVGACCCCCCVBRD | Consensus sequence: HKBBGGGGGGTCVHHH |
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| Dataset #: 2 | Motif ID: 2 | Motif name: Motif 2 |
| Original motif | Reverse complement motif |
| Consensus sequence: RGRAGARRGARRAR | Consensus sequence: MTMMTCMMTCTKCK |
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Best Matches for Motif ID 2 (Highest to Lowest)
| Motif ID: | UP00013 |
| Motif name: | Gabpa_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 14 |
| Similarity score: | 0.0378622 |
Alignment:
DBVVDRSGGAWKVHKG
RGRAGARRGARRAR--
| Original motif | Reverse complement motif |
| Consensus sequence: CYDBYWTCCSMHBVVH | Consensus sequence: DBVVDRSGGAWKVHKG |
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| Motif ID: | UP00101 |
| Motif name: | Sox12_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 2 |
| Number of overlap: | 14 |
| Similarity score: | 0.038148 |
Alignment:
VVDBASACAAAGRADH
-RGRAGARRGARRAR-
| Original motif | Reverse complement motif |
| Consensus sequence: VVDBASACAAAGRADH | Consensus sequence: HDTMCTTTGTSTVDBB |
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| Motif ID: | UP00058 |
| Motif name: | Tcf3_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 14 |
| Similarity score: | 0.039618 |
Alignment:
DVBSBDAHAHAHAHH
RGRAGARRGARRAR-
| Original motif | Reverse complement motif |
| Consensus sequence: DVBSBDAHAHAHAHH | Consensus sequence: HHTHTHTHTDBSBVD |
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| Motif ID: | UP00528 |
| Motif name: | Foxm1_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 9 |
| Number of overlap: | 14 |
| Similarity score: | 0.0407385 |
Alignment:
MWSMBAARRATGCDCABHATGD
MTMMTCMMTCTKCK--------
| Original motif | Reverse complement motif |
| Consensus sequence: MWSMBAARRATGCDCABHATGD | Consensus sequence: DCATDBTGHGCATKMTTBRSWR |
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| Motif ID: | UP00002 |
| Motif name: | Sp4_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 14 |
| Similarity score: | 0.0409403 |
Alignment:
BVVHAGGGGGCGRDHHB
-RGRAGARRGARRAR--
| Original motif | Reverse complement motif |
| Consensus sequence: BDHHMCGCCCCCTHVBB | Consensus sequence: BVVHAGGGGGCGRDHHB |
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| Dataset #: 2 | Motif ID: 3 | Motif name: Motif 3 |
| Original motif | Reverse complement motif |
| Consensus sequence: AWAAAWTWAAASWA | Consensus sequence: TWSTTTWAWTTTWT |
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Best Matches for Motif ID 3 (Highest to Lowest)
| Motif ID: | UP00121 |
| Motif name: | Hoxd10 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 14 |
| Similarity score: | 0.0232094 |
Alignment:
HDDDATTTTATTKVRDB
--TWSTTTWAWTTTWT-
| Original motif | Reverse complement motif |
| Consensus sequence: VDKVYAATAAAATDDDH | Consensus sequence: HDDDATTTTATTKVRDB |
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| Motif ID: | UP00077 |
| Motif name: | Srf_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 14 |
| Similarity score: | 0.024404 |
Alignment:
VBDDAAAAAAAAMVBHH
--AWAAAWTWAAASWA-
| Original motif | Reverse complement motif |
| Consensus sequence: VBDDAAAAAAAAMVBHH | Consensus sequence: HHVBYTTTTTTTTDDVV |
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| Motif ID: | UP00255 |
| Motif name: | Dbx1 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 14 |
| Similarity score: | 0.0273798 |
Alignment:
HARTHAATTAWTAVDHD
--AWAAAWTWAAASWA-
| Original motif | Reverse complement motif |
| Consensus sequence: HARTHAATTAWTAVDHD | Consensus sequence: DHDBTAWTAATTHAKTH |
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| Motif ID: | UP00090 |
| Motif name: | Elf3_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 14 |
| Similarity score: | 0.0293574 |
Alignment:
DBTHHAAAAAAAAVHDH
--AWAAAWTWAAASWA-
| Original motif | Reverse complement motif |
| Consensus sequence: DBTHHAAAAAAAAVHDH | Consensus sequence: DDHBTTTTTTTTHDAVH |
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| Motif ID: | UP00037 |
| Motif name: | Zfp105_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 14 |
| Similarity score: | 0.0316804 |
Alignment:
HDYAAAHAAMAADHD
AWAAAWTWAAASWA-
| Original motif | Reverse complement motif |
| Consensus sequence: HDYAAAHAAMAADHD | Consensus sequence: HHHTTRTTDTTTKDH |
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| Dataset #: 2 | Motif ID: 4 | Motif name: Motif 4 |
| Original motif | Reverse complement motif |
| Consensus sequence: AAAAWTTRCWT | Consensus sequence: AWGKAAWTTTT |
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Best Matches for Motif ID 4 (Highest to Lowest)
| Motif ID: | UP00044 |
| Motif name: | Mafk_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 11 |
| Similarity score: | 0.022187 |
Alignment:
VHAAAAADTGCAHBR
--AAAAWTTRCWT--
| Original motif | Reverse complement motif |
| Consensus sequence: VHAAAAADTGCAHBR | Consensus sequence: MBHTGCADTTTTTHV |
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| Motif ID: | UP00075 |
| Motif name: | Sox15_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 11 |
| Similarity score: | 0.0318877 |
Alignment:
DHVKMWATTGTTHDHDH
AWGKAAWTTTT------
| Original motif | Reverse complement motif |
| Consensus sequence: HDDDDAACAATWRRBHD | Consensus sequence: DHVKMWATTGTTHDHDH |
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| Motif ID: | UP00091 |
| Motif name: | Sox5_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 6 |
| Number of overlap: | 11 |
| Similarity score: | 0.0333897 |
Alignment:
DHDDWATTGTTCDDHD
AWGKAAWTTTT-----
| Original motif | Reverse complement motif |
| Consensus sequence: DHDDGAACAATWDDHD | Consensus sequence: DHDDWATTGTTCDDHD |
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| Motif ID: | UP00014 |
| Motif name: | Sox17_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.0352391 |
Alignment:
DDWTBAATTGTTDDB
-AWGKAAWTTTT---
| Original motif | Reverse complement motif |
| Consensus sequence: VDDAACAATTVAWHD | Consensus sequence: DDWTBAATTGTTDDB |
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| Motif ID: | UP00069 |
| Motif name: | Sox1_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 11 |
| Similarity score: | 0.0357052 |
Alignment:
HBDTAATTGTTABBV
AWGKAAWTTTT----
| Original motif | Reverse complement motif |
| Consensus sequence: HBDTAATTGTTABBV | Consensus sequence: VBVTAACAATTADVD |
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| Dataset #: 2 | Motif ID: 5 | Motif name: Motif 5 |
| Original motif | Reverse complement motif |
| Consensus sequence: AWTAAATAYAATTT | Consensus sequence: AAATTKTATTTAWT |
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Best Matches for Motif ID 5 (Highest to Lowest)
| Motif ID: | UP00121 |
| Motif name: | Hoxd10 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 14 |
| Similarity score: | 0.0258732 |
Alignment:
HDDDATTTTATTKVRDB
--AAATTKTATTTAWT-
| Original motif | Reverse complement motif |
| Consensus sequence: VDKVYAATAAAATDDDH | Consensus sequence: HDDDATTTTATTKVRDB |
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| Motif ID: | UP00169 |
| Motif name: | Lmx1b |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 14 |
| Similarity score: | 0.0275967 |
Alignment:
VDWWWTTAATTAATDHB
AAATTKTATTTAWT---
| Original motif | Reverse complement motif |
| Consensus sequence: VDWWWTTAATTAATDHB | Consensus sequence: BHDATTAATTAAWWWHB |
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| Motif ID: | UP00212 |
| Motif name: | Lhx5 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 14 |
| Similarity score: | 0.0276125 |
Alignment:
VDHWTTTAATTAATHHV
AAATTKTATTTAWT---
| Original motif | Reverse complement motif |
| Consensus sequence: VDHATTAATTAAAWHHB | Consensus sequence: VDHWTTTAATTAATHHV |
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| Motif ID: | UP00016 |
| Motif name: | Sry_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 14 |
| Similarity score: | 0.027741 |
Alignment:
BHDHATTATAATDDDV
AWTAAATAYAATTT--
| Original motif | Reverse complement motif |
| Consensus sequence: BHDHATTATAATDDDV | Consensus sequence: VDDDATTATAATHDHV |
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| Motif ID: | UP00180 |
| Motif name: | Hoxd13 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 14 |
| Similarity score: | 0.0290926 |
Alignment:
HDHHTTTTATTKKHDD
-AAATTKTATTTAWT-
| Original motif | Reverse complement motif |
| Consensus sequence: HDHYYAATAAAAHHHH | Consensus sequence: HDHHTTTTATTKKHDD |
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| Dataset #: 2 | Motif ID: 6 | Motif name: Motif 6 |
| Original motif | Reverse complement motif |
| Consensus sequence: AATTYDGAARTAWW | Consensus sequence: WWTAKTTCDKAATT |
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Best Matches for Motif ID 6 (Highest to Lowest)
| Motif ID: | UP00015 |
| Motif name: | Ehf_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 2 |
| Number of overlap: | 14 |
| Similarity score: | 0.0435331 |
Alignment:
WDSHTYGGAAVTDVDW
-AATTYDGAARTAWW-
| Original motif | Reverse complement motif |
| Consensus sequence: WDVDABTTCCKAHSDW | Consensus sequence: WDSHTYGGAAVTDVDW |
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| Motif ID: | UP00044 |
| Motif name: | Mafk_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 14 |
| Similarity score: | 0.0443465 |
Alignment:
HAGTCAGCAWTTTWD
AATTYDGAARTAWW-
| Original motif | Reverse complement motif |
| Consensus sequence: DWAAAWTGCTGACTH | Consensus sequence: HAGTCAGCAWTTTWD |
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| Motif ID: | UP00061 |
| Motif name: | Foxl1_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 1 |
| Number of overlap: | 14 |
| Similarity score: | 0.0477209 |
Alignment:
HDTYTTGTTWTKDDDT
--WWTAKTTCDKAATT
| Original motif | Reverse complement motif |
| Consensus sequence: ADDDYAWAACAAMAHH | Consensus sequence: HDTYTTGTTWTKDDDT |
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| Motif ID: | UP00255 |
| Motif name: | Dbx1 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 14 |
| Similarity score: | 0.0481558 |
Alignment:
DHDBTAWTAATTHAKTH
--WWTAKTTCDKAATT-
| Original motif | Reverse complement motif |
| Consensus sequence: HARTHAATTAWTAVDHD | Consensus sequence: DHDBTAWTAATTHAKTH |
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| Motif ID: | UP00097 |
| Motif name: | Mtf1_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 1 |
| Number of overlap: | 14 |
| Similarity score: | 0.0495241 |
Alignment:
VDTHTTTHHTATDH
WWTAKTTCDKAATT
| Original motif | Reverse complement motif |
| Consensus sequence: HDATAHDAAAHADV | Consensus sequence: VDTHTTTHHTATDH |
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| Dataset #: 2 | Motif ID: 7 | Motif name: Motif 7 |
| Original motif | Reverse complement motif |
| Consensus sequence: CSKCCCCGCCCCSY | Consensus sequence: MSGGGGCGGGGYSG |
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Best Matches for Motif ID 7 (Highest to Lowest)
| Motif ID: | UP00093 |
| Motif name: | Klf7_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 14 |
| Similarity score: | 0.000548354 |
Alignment:
DHHDGGGCGRGGKHBH
-MSGGGGCGGGGYSG-
| Original motif | Reverse complement motif |
| Consensus sequence: HBDRCCMCGCCCHHHD | Consensus sequence: DHHDGGGCGRGGKHBH |
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| Motif ID: | UP00000 |
| Motif name: | Smad3_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 2 |
| Number of overlap: | 14 |
| Similarity score: | 0.00741351 |
Alignment:
DHHBCCCCGCCAHHBHB
-CSKCCCCGCCCCSY--
| Original motif | Reverse complement motif |
| Consensus sequence: DHHBCCCCGCCAHHBHB | Consensus sequence: BHBHDTGGCGGGGBDHD |
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| Motif ID: | UP00022 |
| Motif name: | Zfp740_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 14 |
| Similarity score: | 0.0114155 |
Alignment:
HVBCCCCCCCCMHHHB
CSKCCCCGCCCCSY--
| Original motif | Reverse complement motif |
| Consensus sequence: HVBCCCCCCCCMHHHB | Consensus sequence: BHHDYGGGGGGGGBVD |
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| Motif ID: | UP00021 |
| Motif name: | Zfp281_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 2 |
| Number of overlap: | 14 |
| Similarity score: | 0.0133301 |
Alignment:
DBCCCCCCCCCCMYC
-CSKCCCCGCCCCSY
| Original motif | Reverse complement motif |
| Consensus sequence: DBCCCCCCCCCCMYC | Consensus sequence: GKRGGGGGGGGGGBD |
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| Motif ID: | UP00033 |
| Motif name: | Zfp410_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 14 |
| Similarity score: | 0.0158143 |
Alignment:
HHHHDGGGGCGGDBHDV
---MSGGGGCGGGGYSG
| Original motif | Reverse complement motif |
| Consensus sequence: BHHBHCCGCCCCDHHHH | Consensus sequence: HHHHDGGGGCGGDBHDV |
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| Dataset #: 2 | Motif ID: 8 | Motif name: Motif 8 |
| Original motif | Reverse complement motif |
| Consensus sequence: AAATRWTAAAATCA | Consensus sequence: TGATTTTAWKATTT |
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Best Matches for Motif ID 8 (Highest to Lowest)
| Motif ID: | UP00173 |
| Motif name: | Hoxc13 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 14 |
| Similarity score: | 0.0325737 |
Alignment:
DHWTTTTAMGAGBDHH
TGATTTTAWKATTT--
| Original motif | Reverse complement motif |
| Consensus sequence: HHDBCTCRTAAAAWHD | Consensus sequence: DHWTTTTAMGAGBDHH |
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| Motif ID: | UP00235 |
| Motif name: | Hoxc11 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 14 |
| Similarity score: | 0.036026 |
Alignment:
HDHTTTTACGACDTTH
TGATTTTAWKATTT--
| Original motif | Reverse complement motif |
| Consensus sequence: HAADGTCGTAAAAHDD | Consensus sequence: HDHTTTTACGACDTTH |
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| Motif ID: | UP00183 |
| Motif name: | Hoxa13 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 14 |
| Similarity score: | 0.0380573 |
Alignment:
DVWTTTTACGAGBHDH
TGATTTTAWKATTT--
| Original motif | Reverse complement motif |
| Consensus sequence: HDHBCTCGTAAAAWBD | Consensus sequence: DVWTTTTACGAGBHDH |
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| Motif ID: | UP00246 |
| Motif name: | Hoxa11 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 14 |
| Similarity score: | 0.039136 |
Alignment:
DDDTTTTACGACDTDH
TGATTTTAWKATTT--
| Original motif | Reverse complement motif |
| Consensus sequence: HDADGTCGTAAAAHDD | Consensus sequence: DDDTTTTACGACDTDH |
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| Motif ID: | UP00180 |
| Motif name: | Hoxd13 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 2 |
| Number of overlap: | 14 |
| Similarity score: | 0.0391372 |
Alignment:
HDHYYAATAAAAHHHH
-AAATRWTAAAATCA-
| Original motif | Reverse complement motif |
| Consensus sequence: HDHYYAATAAAAHHHH | Consensus sequence: HDHHTTTTATTKKHDD |
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| Dataset #: 2 | Motif ID: 9 | Motif name: Motif 9 |
| Original motif | Reverse complement motif |
| Consensus sequence: AATHATATWTHAAA | Consensus sequence: TTTDAWATATHATT |
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Best Matches for Motif ID 9 (Highest to Lowest)
| Motif ID: | UP00090 |
| Motif name: | Elf3_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 14 |
| Similarity score: | 0.0521335 |
Alignment:
DBTHHAAAAAAAAVHDH
--TTTDAWATATHATT-
| Original motif | Reverse complement motif |
| Consensus sequence: DBTHHAAAAAAAAVHDH | Consensus sequence: DDHBTTTTTTTTHDAVH |
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| Motif ID: | UP00255 |
| Motif name: | Dbx1 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 14 |
| Similarity score: | 0.0522843 |
Alignment:
DHDBTAWTAATTHAKTH
--TTTDAWATATHATT-
| Original motif | Reverse complement motif |
| Consensus sequence: HARTHAATTAWTAVDHD | Consensus sequence: DHDBTAWTAATTHAKTH |
| |
|
| Motif ID: | UP00091 |
| Motif name: | Sox5_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 14 |
| Similarity score: | 0.0548459 |
Alignment:
DHDCATMATTDASDD
AATHATATWTHAAA-
| Original motif | Reverse complement motif |
| Consensus sequence: DHDCATMATTDASDD | Consensus sequence: DHSTDAATYATGDHD |
 |
 |
| Motif ID: | UP00121 |
| Motif name: | Hoxd10 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 14 |
| Similarity score: | 0.0549685 |
Alignment:
HDDDATTTTATTKVRDB
---AATHATATWTHAAA
| Original motif | Reverse complement motif |
| Consensus sequence: VDKVYAATAAAATDDDH | Consensus sequence: HDDDATTTTATTKVRDB |
| |
|
| Motif ID: | UP00078 |
| Motif name: | Arid3a_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 14 |
| Similarity score: | 0.0553164 |
Alignment:
VBBHTTAATTAAAMHHH
AATHATATWTHAAA---
| Original motif | Reverse complement motif |
| Consensus sequence: VBBHTTAATTAAAMHHH | Consensus sequence: DHHYTTTAATTAAHBBV |
 |
 |
| Dataset #: 2 | Motif ID: 10 | Motif name: Motif 10 |
| Original motif | Reverse complement motif |
| Consensus sequence: TTTCATAAWT | Consensus sequence: AWTTATGAAA |
 |
 |
Best Matches for Motif ID 10 (Highest to Lowest)
| Motif ID: | UP00118 |
| Motif name: | Pou4f3 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 5 |
| Number of overlap: | 10 |
| Similarity score: | 0.017789 |
Alignment:
GHYHTYATTAATAAVH
--TTTCATAAWT----
| Original motif | Reverse complement motif |
| Consensus sequence: HVTTATTAATKADKHC | Consensus sequence: GHYHTYATTAATAAVH |
 |
 |
| Motif ID: | UP00211 |
| Motif name: | Pou3f3 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 10 |
| Similarity score: | 0.0192304 |
Alignment:
HADDTATGCATAATDDA
-----TTTCATAAWT--
| Original motif | Reverse complement motif |
| Consensus sequence: HADDTATGCATAATDDA | Consensus sequence: TDDATTATGCATADDTH |
 |
 |
| Motif ID: | UP00179 |
| Motif name: | Pou2f3 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 10 |
| Similarity score: | 0.0193076 |
Alignment:
BHDTATGCAAATBHDV
AWTTATGAAA------
| Original motif | Reverse complement motif |
| Consensus sequence: BHDTATGCAAATBHDV | Consensus sequence: BHHVATTTGCATAHHV |
 |
 |
| Motif ID: | UP00191 |
| Motif name: | Pou2f2 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 1 |
| Number of overlap: | 10 |
| Similarity score: | 0.0200501 |
Alignment:
BHDTATGCAAATDHDV
------TTTCATAAWT
| Original motif | Reverse complement motif |
| Consensus sequence: BHDTATGCAAATDHDV | Consensus sequence: BHHDATTTGCATAHHV |
 |
 |
| Motif ID: | UP00130 |
| Motif name: | Lhx3 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 10 |
| Similarity score: | 0.020314 |
Alignment:
VHHWWTTAATTAATTDV
----TTTCATAAWT---
| Original motif | Reverse complement motif |
| Consensus sequence: VDAATTAATTAAWWHHB | Consensus sequence: VHHWWTTAATTAATTDV |
 |
 |
| Dataset #: 2 | Motif ID: 11 | Motif name: Motif 11 |
| Original motif | Reverse complement motif |
| Consensus sequence: ATTTWATGAAA | Consensus sequence: TTTCATWAAAT |
 |
 |
Best Matches for Motif ID 11 (Highest to Lowest)
| Motif ID: | UP00130 |
| Motif name: | Lhx3 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 5 |
| Number of overlap: | 11 |
| Similarity score: | 0.0235917 |
Alignment:
VHHWWTTAATTAATTDV
----TTTCATWAAAT--
| Original motif | Reverse complement motif |
| Consensus sequence: VDAATTAATTAAWWHHB | Consensus sequence: VHHWWTTAATTAATTDV |
| |
|
| Motif ID: | UP00212 |
| Motif name: | Lhx5 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.0238582 |
Alignment:
VDHWTTTAATTAATHHV
---ATTTWATGAAA---
| Original motif | Reverse complement motif |
| Consensus sequence: VDHATTAATTAAAWHHB | Consensus sequence: VDHWTTTAATTAATHHV |
| |
|
| Motif ID: | UP00173 |
| Motif name: | Hoxc13 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.024458 |
Alignment:
HHDBCTCRTAAAAWHD
---TTTCATWAAAT--
| Original motif | Reverse complement motif |
| Consensus sequence: HHDBCTCRTAAAAWHD | Consensus sequence: DHWTTTTAMGAGBDHH |
| |
|
| Motif ID: | UP00169 |
| Motif name: | Lmx1b |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 5 |
| Number of overlap: | 11 |
| Similarity score: | 0.0247146 |
Alignment:
VDWWWTTAATTAATDHB
----TTTCATWAAAT--
| Original motif | Reverse complement motif |
| Consensus sequence: VDWWWTTAATTAATDHB | Consensus sequence: BHDATTAATTAAWWWHB |
| |
|
| Motif ID: | UP00188 |
| Motif name: | Lmx1a |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 5 |
| Number of overlap: | 11 |
| Similarity score: | 0.0250542 |
Alignment:
CVHHTTAATTAAWWWHB
--ATTTWATGAAA----
| Original motif | Reverse complement motif |
| Consensus sequence: CVHHTTAATTAAWWWHB | Consensus sequence: BDWWWTTAATTAAHHVG |
 |
 |
| Dataset #: 2 | Motif ID: 12 | Motif name: Motif 12 |
| Original motif | Reverse complement motif |
| Consensus sequence: AAAACAAA | Consensus sequence: TTTGTTTT |
 |
 |
Best Matches for Motif ID 12 (Highest to Lowest)
| Motif ID: | UP00062 |
| Motif name: | Sox4_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 8 |
| Similarity score: | 0 |
Alignment:
HBDDDAACAAAGRVBHH
---AAAACAAA------
| Original motif | Reverse complement motif |
| Consensus sequence: HBDDDAACAAAGRVBHH | Consensus sequence: HHBBMCTTTGTTHDDBH |
 |
 |
| Motif ID: | UP00030 |
| Motif name: | Sox11_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 7 |
| Number of overlap: | 8 |
| Similarity score: | 0.000282957 |
Alignment:
HBDDRAACAAAGRABHH
---AAAACAAA------
| Original motif | Reverse complement motif |
| Consensus sequence: HBDDRAACAAAGRABHH | Consensus sequence: HHBTMCTTTGTTMDDVH |
 |
 |
| Motif ID: | UP00025 |
| Motif name: | Foxk1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 8 |
| Similarity score: | 0.00309128 |
Alignment:
BBVTTTGTTTACATTDD
---TTTGTTTT------
| Original motif | Reverse complement motif |
| Consensus sequence: DDAATGTAAACAAAVVB | Consensus sequence: BBVTTTGTTTACATTDD |
 |
 |
| Motif ID: | UP00061 |
| Motif name: | Foxl1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 8 |
| Similarity score: | 0.00620509 |
Alignment:
VVVWTTGTTTAMATTWD
---TTTGTTTT------
| Original motif | Reverse complement motif |
| Consensus sequence: DWAATRTAAACAAWVVB | Consensus sequence: VVVWTTGTTTAMATTWD |
 |
 |
| Motif ID: | UP00039 |
| Motif name: | Foxj3_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 8 |
| Similarity score: | 0.00680733 |
Alignment:
DVVTTTGTTTACDTHDH
---TTTGTTTT------
| Original motif | Reverse complement motif |
| Consensus sequence: HDHADGTAAACAAAVVH | Consensus sequence: DVVTTTGTTTACDTHDH |
 |
 |
| Dataset #: 2 | Motif ID: 13 | Motif name: Motif 13 |
| Original motif | Reverse complement motif |
| Consensus sequence: AAAGATTT | Consensus sequence: AAATCTTT |
 |
 |
Best Matches for Motif ID 13 (Highest to Lowest)
| Motif ID: | UP00114 |
| Motif name: | Homez |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 8 |
| Similarity score: | 0.00327586 |
Alignment:
AHWWMATCGTTTTBADD
---AAATCTTT------
| Original motif | Reverse complement motif |
| Consensus sequence: AHWWMATCGTTTTBADD | Consensus sequence: HDTVAAAACGATRWWHT |
 |
 |
| Motif ID: | UP00148 |
| Motif name: | Hdx |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 8 |
| Similarity score: | 0.0107572 |
Alignment:
DDKDHGAAATCAHHBHV
------AAATCTTT---
| Original motif | Reverse complement motif |
| Consensus sequence: DDKDHGAAATCAHHBHV | Consensus sequence: BDBDHTGATTTCDHYDD |
 |
 |
| Motif ID: | UP00080 |
| Motif name: | Gata5_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 7 |
| Number of overlap: | 8 |
| Similarity score: | 0.0119733 |
Alignment:
VVBHRAGATATCWDHBB
---AAAGATTT------
| Original motif | Reverse complement motif |
| Consensus sequence: VVBHRAGATATCWDHBB | Consensus sequence: VVHHWGATATCTMHBBV |
 |
 |
| Motif ID: | UP00059 |
| Motif name: | Arid5a_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 8 |
| Similarity score: | 0.0140725 |
Alignment:
HDTDVCAATATTMV
-----AAAGATTT-
| Original motif | Reverse complement motif |
| Consensus sequence: VYAATATTGVDADH | Consensus sequence: HDTDVCAATATTMV |
 |
 |
| Motif ID: | UP00067 |
| Motif name: | Lef1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 9 |
| Number of overlap: | 8 |
| Similarity score: | 0.0151544 |
Alignment:
VDDAGATCAAAGGKDDD
--------AAAGATTT-
| Original motif | Reverse complement motif |
| Consensus sequence: DDDYCCTTTGATCTDDV | Consensus sequence: VDDAGATCAAAGGKDDD |
 |
 |
| Dataset #: 2 | Motif ID: 14 | Motif name: Motif 14 |
| Original motif | Reverse complement motif |
| Consensus sequence: AWAAATAA | Consensus sequence: TTATTTWT |
 |
 |
Best Matches for Motif ID 14 (Highest to Lowest)
| Motif ID: | UP00032 |
| Motif name: | Gata3_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 6 |
| Number of overlap: | 8 |
| Similarity score: | 0.00506466 |
Alignment:
HBHDVHDTCTTATCTHTDDHDV
---------TTATTTWT-----
| Original motif | Reverse complement motif |
| Consensus sequence: BDHDDADAGATAAGADHBDHVD | Consensus sequence: HBHDVHDTCTTATCTHTDDHDV |
 |
 |
| Motif ID: | UP00061 |
| Motif name: | Foxl1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 5 |
| Number of overlap: | 8 |
| Similarity score: | 0.00546278 |
Alignment:
DWAATRTAAACAAWVVB
-----AWAAATAA----
| Original motif | Reverse complement motif |
| Consensus sequence: DWAATRTAAACAAWVVB | Consensus sequence: VVVWTTGTTTAMATTWD |
| |
|
| Motif ID: | UP00118 |
| Motif name: | Pou4f3 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 5 |
| Number of overlap: | 8 |
| Similarity score: | 0.00832205 |
Alignment:
GHYHTYATTAATAAVH
----TTATTTWT----
| Original motif | Reverse complement motif |
| Consensus sequence: HVTTATTAATKADKHC | Consensus sequence: GHYHTYATTAATAAVH |
| |
|
| Motif ID: | UP00037 |
| Motif name: | Zfp105_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 8 |
| Similarity score: | 0.00912866 |
Alignment:
HHHTTRTTDTTTKDH
---TTATTTWT----
| Original motif | Reverse complement motif |
| Consensus sequence: HDYAAAHAAMAADHD | Consensus sequence: HHHTTRTTDTTTKDH |
| |
|
| Motif ID: | UP00039 |
| Motif name: | Foxj3_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 5 |
| Number of overlap: | 8 |
| Similarity score: | 0.0105685 |
Alignment:
HDHADGTAAACAAAVVH
-----AWAAATAA----
| Original motif | Reverse complement motif |
| Consensus sequence: HDHADGTAAACAAAVVH | Consensus sequence: DVVTTTGTTTACDTHDH |
| |
|
| Dataset #: 2 | Motif ID: 15 | Motif name: Motif 15 |
| Original motif | Reverse complement motif |
| Consensus sequence: ATMACAATAAAA | Consensus sequence: TTTTATTGTYAT |
 |
 |
Best Matches for Motif ID 15 (Highest to Lowest)
| Motif ID: | UP00180 |
| Motif name: | Hoxd13 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 1 |
| Number of overlap: | 12 |
| Similarity score: | 0.00878905 |
Alignment:
HDHHTTTTATTKKHDD
----TTTTATTGTYAT
| Original motif | Reverse complement motif |
| Consensus sequence: HDHYYAATAAAAHHHH | Consensus sequence: HDHHTTTTATTKKHDD |
| |
|
| Motif ID: | UP00134 |
| Motif name: | Hoxb13 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 12 |
| Similarity score: | 0.0162131 |
Alignment:
VRHCCAATAAAAWHHV
ATMACAATAAAA----
| Original motif | Reverse complement motif |
| Consensus sequence: VRHCCAATAAAAWHHV | Consensus sequence: VDHWTTTTATTGGDKB |
 |
 |
| Motif ID: | UP00121 |
| Motif name: | Hoxd10 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 12 |
| Similarity score: | 0.0246749 |
Alignment:
VDKVYAATAAAATDDDH
ATMACAATAAAA-----
| Original motif | Reverse complement motif |
| Consensus sequence: VDKVYAATAAAATDDDH | Consensus sequence: HDDDATTTTATTKVRDB |
| |
|
| Motif ID: | UP00091 |
| Motif name: | Sox5_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 12 |
| Similarity score: | 0.0247927 |
Alignment:
DHDDWATTGTTCDDHD
-TTTTATTGTYAT---
| Original motif | Reverse complement motif |
| Consensus sequence: DHDDGAACAATWDDHD | Consensus sequence: DHDDWATTGTTCDDHD |
| |
|
| Motif ID: | UP00207 |
| Motif name: | Hoxb9 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 5 |
| Number of overlap: | 12 |
| Similarity score: | 0.0248315 |
Alignment:
VRRGCMATAAAAHHHD
ATMACAATAAAA----
| Original motif | Reverse complement motif |
| Consensus sequence: VRRGCMATAAAAHHHD | Consensus sequence: HDHHTTTTATRGCKMV |
 |
 |
| Dataset #: 2 | Motif ID: 16 | Motif name: Motif 16 |
| Original motif | Reverse complement motif |
| Consensus sequence: ACAAWTRATTTTGA | Consensus sequence: TCAAAATKAWTTGT |
 |
 |
Best Matches for Motif ID 16 (Highest to Lowest)
| Motif ID: | UP00034 |
| Motif name: | Sox7_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 1 |
| Number of overlap: | 14 |
| Similarity score: | 0.0530035 |
Alignment:
HHBDHDDAACAATDRHHHHHBW
--------ACAAWTRATTTTGA
| Original motif | Reverse complement motif |
| Consensus sequence: HHBDHDDAACAATDRHHHHHBW | Consensus sequence: WBHHHHHMDATTGTTHDHDVHH |
 |
 |
| Motif ID: | UP00158 |
| Motif name: | Pou1f1 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 2 |
| Number of overlap: | 14 |
| Similarity score: | 0.059328 |
Alignment:
BDHDTAATTAATTADBH
-TCAAAATKAWTTGT--
| Original motif | Reverse complement motif |
| Consensus sequence: DVDTAATTAATTADDDB | Consensus sequence: BDHDTAATTAATTADBH |
 |
 |
| Motif ID: | UP00128 |
| Motif name: | Pou3f2 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 14 |
| Similarity score: | 0.0618019 |
Alignment:
HHDVMTAATTAATTDDV
--TCAAAATKAWTTGT-
| Original motif | Reverse complement motif |
| Consensus sequence: VDDAATTAATTARBDHD | Consensus sequence: HHDVMTAATTAATTDDV |
 |
 |
| Motif ID: | UP00105 |
| Motif name: | Pou3f4 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 2 |
| Number of overlap: | 14 |
| Similarity score: | 0.0620147 |
Alignment:
BDDDTAATTAATTAHBD
-TCAAAATKAWTTGT--
| Original motif | Reverse complement motif |
| Consensus sequence: DVHTAATTAATTADDDB | Consensus sequence: BDDDTAATTAATTAHBD |
 |
 |
| Motif ID: | UP00200 |
| Motif name: | Nkx6-1_2825.1 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 14 |
| Similarity score: | 0.0623004 |
Alignment:
CBVMRTAATTAATTHBH
--TCAAAATKAWTTGT-
| Original motif | Reverse complement motif |
| Consensus sequence: DVHAATTAATTAMYBBG | Consensus sequence: CBVMRTAATTAATTHBH |
 |
 |
| Dataset #: 2 | Motif ID: 17 | Motif name: Motif 17 |
| Original motif | Reverse complement motif |
| Consensus sequence: AAAAATGAAT | Consensus sequence: ATTCATTTTT |
 |
 |
Best Matches for Motif ID 17 (Highest to Lowest)
| Motif ID: | UP00055 |
| Motif name: | Hbp1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 10 |
| Similarity score: | 0.00216896 |
Alignment:
HHDWTSAATGAATDDB
---AAAAATGAAT---
| Original motif | Reverse complement motif |
| Consensus sequence: HHDWTSAATGAATDDB | Consensus sequence: VDHATTCATTSAWDDH |
 |
 |
| Motif ID: | UP00145 |
| Motif name: | Barhl2 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 7 |
| Number of overlap: | 10 |
| Similarity score: | 0.010273 |
Alignment:
HAMAAHCAATTAABHH
AAAAATGAAT------
| Original motif | Reverse complement motif |
| Consensus sequence: HAMAAHCAATTAABHH | Consensus sequence: HHBTTAATTGDTTYTH |
 |
 |
| Motif ID: | UP00171 |
| Motif name: | Msx3 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 10 |
| Similarity score: | 0.0106868 |
Alignment:
HHVTTAATTKGTTHTV
--ATTCATTTTT----
| Original motif | Reverse complement motif |
| Consensus sequence: VAHAACYAATTAABHH | Consensus sequence: HHVTTAATTKGTTHTV |
 |
 |
| Motif ID: | UP00044 |
| Motif name: | Mafk_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 10 |
| Similarity score: | 0.0131738 |
Alignment:
MBHTGCADTTTTTHV
--ATTCATTTTT---
| Original motif | Reverse complement motif |
| Consensus sequence: VHAAAAADTGCAHBR | Consensus sequence: MBHTGCADTTTTTHV |
| |
|
| Motif ID: | UP00105 |
| Motif name: | Pou3f4 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 2 |
| Number of overlap: | 10 |
| Similarity score: | 0.0157045 |
Alignment:
DVHTAATTAATTADDDB
-AAAAATGAAT------
| Original motif | Reverse complement motif |
| Consensus sequence: DVHTAATTAATTADDDB | Consensus sequence: BDDDTAATTAATTAHBD |
| |
|
| Dataset #: 2 | Motif ID: 18 | Motif name: Motif 18 |
| Original motif | Reverse complement motif |
| Consensus sequence: TTAGWTWATAA | Consensus sequence: TTATWAWCTAA |
 |
 |
Best Matches for Motif ID 18 (Highest to Lowest)
| Motif ID: | UP00262 |
| Motif name: | Lhx1 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 5 |
| Number of overlap: | 11 |
| Similarity score: | 0.0358953 |
Alignment:
VVDATTAATTAAWWAHB
----TTAGWTWATAA--
| Original motif | Reverse complement motif |
| Consensus sequence: VVDATTAATTAAWWAHB | Consensus sequence: BHTWWTTAATTAATDVV |
 |
 |
| Motif ID: | UP00129 |
| Motif name: | Pou3f1 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.038042 |
Alignment:
DAVTTAATTAATTAVBD
---TTAGWTWATAA---
| Original motif | Reverse complement motif |
| Consensus sequence: DVBTAATTAATTAABTH | Consensus sequence: DAVTTAATTAATTAVBD |
 |
 |
| Motif ID: | UP00082 |
| Motif name: | Zfp187_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 1 |
| Number of overlap: | 11 |
| Similarity score: | 0.0384021 |
Alignment:
BTATGTACTAATWH
---TTAGWTWATAA
| Original motif | Reverse complement motif |
| Consensus sequence: BTATGTACTAATWH | Consensus sequence: HWATTAGTACATAV |
 |
 |
| Motif ID: | UP00146 |
| Motif name: | Pou6f1_1731.2 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 7 |
| Number of overlap: | 11 |
| Similarity score: | 0.0387939 |
Alignment:
DHDASCTCATTAWVVHV
------TTATWAWCTAA
| Original motif | Reverse complement motif |
| Consensus sequence: VHVVWTAATGAGSTDDH | Consensus sequence: DHDASCTCATTAWVVHV |
 |
 |
| Motif ID: | UP00169 |
| Motif name: | Lmx1b |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 11 |
| Similarity score: | 0.0395035 |
Alignment:
VDWWWTTAATTAATDHB
--TTATWAWCTAA----
| Original motif | Reverse complement motif |
| Consensus sequence: VDWWWTTAATTAATDHB | Consensus sequence: BHDATTAATTAAWWWHB |
| |
|
| Dataset #: 2 | Motif ID: 19 | Motif name: Motif 19 |
| Original motif | Reverse complement motif |
| Consensus sequence: TTCWTAGATTAWA | Consensus sequence: TWTAATCTAWGAA |
 |
 |
Best Matches for Motif ID 19 (Highest to Lowest)
| Motif ID: | UP00208 |
| Motif name: | Obox5_2284.1 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 1 |
| Number of overlap: | 13 |
| Similarity score: | 0.0233931 |
Alignment:
DHHAHTTAATCCCKVDH
----TWTAATCTAWGAA
| Original motif | Reverse complement motif |
| Consensus sequence: HDVRGGGATTAAHTHHH | Consensus sequence: DHHAHTTAATCCCKVDH |
 |
 |
| Motif ID: | UP00032 |
| Motif name: | Gata3_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 13 |
| Similarity score: | 0.0251817 |
Alignment:
HBHDVHDTCTTATCTHTDDHDV
-------TWTAATCTAWGAA--
| Original motif | Reverse complement motif |
| Consensus sequence: BDHDDADAGATAAGADHBDHVD | Consensus sequence: HBHDVHDTCTTATCTHTDDHDV |
| |
|
| Motif ID: | UP00208 |
| Motif name: | Obox5_3963.2 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 1 |
| Number of overlap: | 13 |
| Similarity score: | 0.026815 |
Alignment:
VWBAHTTAATCCCTVKB
----TWTAATCTAWGAA
| Original motif | Reverse complement motif |
| Consensus sequence: VRVAGGGATTAAHTVWV | Consensus sequence: VWBAHTTAATCCCTVKB |
 |
 |
| Motif ID: | UP00188 |
| Motif name: | Lmx1a |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 2 |
| Number of overlap: | 13 |
| Similarity score: | 0.02879 |
Alignment:
BDWWWTTAATTAAHHVG
-TTCWTAGATTAWA---
| Original motif | Reverse complement motif |
| Consensus sequence: CVHHTTAATTAAWWWHB | Consensus sequence: BDWWWTTAATTAAHHVG |
| |
|
| Motif ID: | UP00109 |
| Motif name: | Obox6 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 2 |
| Number of overlap: | 13 |
| Similarity score: | 0.028848 |
Alignment:
AHAADCGGATTAWHB
-TTCWTAGATTAWA-
| Original motif | Reverse complement motif |
| Consensus sequence: AHAADCGGATTAWHB | Consensus sequence: BHWTAATCCGDTTHT |
 |
 |
| Dataset #: 2 | Motif ID: 20 | Motif name: Motif 20 |
| Original motif | Reverse complement motif |
| Consensus sequence: TTMAAAGATTT | Consensus sequence: AAATCTTTYAA |
 |
 |
Best Matches for Motif ID 20 (Highest to Lowest)
| Motif ID: | UP00145 |
| Motif name: | Barhl2 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.0251004 |
Alignment:
HAMAAHCAATTAABHH
--AAATCTTTYAA---
| Original motif | Reverse complement motif |
| Consensus sequence: HAMAAHCAATTAABHH | Consensus sequence: HHBTTAATTGDTTYTH |
| |
|
| Motif ID: | UP00258 |
| Motif name: | Tgif2 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 11 |
| Similarity score: | 0.0274736 |
Alignment:
AABBAGCTGTCAAWVV
--AAATCTTTYAA---
| Original motif | Reverse complement motif |
| Consensus sequence: AABBAGCTGTCAAWVV | Consensus sequence: VBWTTGACAGCTVBTT |
 |
 |
| Motif ID: | UP00067 |
| Motif name: | Lef1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 6 |
| Number of overlap: | 11 |
| Similarity score: | 0.0280825 |
Alignment:
VDDAGATCAAAGGKDDD
-----TTMAAAGATTT-
| Original motif | Reverse complement motif |
| Consensus sequence: DDDYCCTTTGATCTDDV | Consensus sequence: VDDAGATCAAAGGKDDD |
| |
|
| Motif ID: | UP00203 |
| Motif name: | Pknox1 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.0285392 |
Alignment:
DRVSASCTGTCAAWVV
--AAATCTTTYAA---
| Original motif | Reverse complement motif |
| Consensus sequence: DRVSASCTGTCAAWVV | Consensus sequence: VVWTTGACAGSTSBKD |
 |
 |
| Motif ID: | UP00186 |
| Motif name: | Meis1 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 11 |
| Similarity score: | 0.0294621 |
Alignment:
WAVBASCTGTCAAWVH
--AAATCTTTYAA---
| Original motif | Reverse complement motif |
| Consensus sequence: WAVBASCTGTCAAWVH | Consensus sequence: DBWTTGACAGSTBVTW |
 |
 |
| Dataset #: 2 | Motif ID: 21 | Motif name: Motif 21 |
| Original motif | Reverse complement motif |
| Consensus sequence: ATAAAA | Consensus sequence: TTTTAT |
 |
 |
Best Matches for Motif ID 21 (Highest to Lowest)
| Motif ID: | UP00180 |
| Motif name: | Hoxd13 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 7 |
| Number of overlap: | 6 |
| Similarity score: | 0 |
Alignment:
HDHHTTTTATTKKHDD
----TTTTAT------
| Original motif | Reverse complement motif |
| Consensus sequence: HDHYYAATAAAAHHHH | Consensus sequence: HDHHTTTTATTKKHDD |
| |
|
| Motif ID: | UP00134 |
| Motif name: | Hoxb13 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 5 |
| Number of overlap: | 6 |
| Similarity score: | 0.00902808 |
Alignment:
VRHCCAATAAAAWHHV
------ATAAAA----
| Original motif | Reverse complement motif |
| Consensus sequence: VRHCCAATAAAAWHHV | Consensus sequence: VDHWTTTTATTGGDKB |
| |
|
| Motif ID: | UP00207 |
| Motif name: | Hoxb9 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 5 |
| Number of overlap: | 6 |
| Similarity score: | 0.00908997 |
Alignment:
VRRGCMATAAAAHHHD
------ATAAAA----
| Original motif | Reverse complement motif |
| Consensus sequence: VRRGCMATAAAAHHHD | Consensus sequence: HDHHTTTTATRGCKMV |
| |
|
| Motif ID: | UP00121 |
| Motif name: | Hoxd10 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 7 |
| Number of overlap: | 6 |
| Similarity score: | 0.0141617 |
Alignment:
VDKVYAATAAAATDDDH
------ATAAAA-----
| Original motif | Reverse complement motif |
| Consensus sequence: VDKVYAATAAAATDDDH | Consensus sequence: HDDDATTTTATTKVRDB |
| |
|
| Motif ID: | UP00133 |
| Motif name: | Cdx2 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 8 |
| Number of overlap: | 6 |
| Similarity score: | 0.0156625 |
Alignment:
HRHTTTTATYMCCVBD
---TTTTAT-------
| Original motif | Reverse complement motif |
| Consensus sequence: DVVGGYMATAAAAHKH | Consensus sequence: HRHTTTTATYMCCVBD |
 |
 |
| Dataset #: 3 | Motif ID: 22 | Motif name: Zfx |
| Original motif | Reverse complement motif |
| Consensus sequence: BBVGCCBVGGCCTV | Consensus sequence: VAGGCCBBGGCVBB |
 |
 |
Best Matches for Motif ID 22 (Highest to Lowest)
| Motif ID: | UP00005 |
| Motif name: | Tcfap2a_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 14 |
| Similarity score: | 0.0596136 |
Alignment:
HHRCCBBWGGDCDB
BBVGCCBVGGCCTV
| Original motif | Reverse complement motif |
| Consensus sequence: HHRCCBBWGGDCDB | Consensus sequence: BDGHCCWBVGGKDH |
 |
 |
| Motif ID: | UP00540 |
| Motif name: | Gli3_v015681_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 14 |
| Similarity score: | 0.0603516 |
Alignment:
ABBBBVVRGACCACCCACRDBBM
BBVGCCBVGGCCTV---------
| Original motif | Reverse complement motif |
| Consensus sequence: ABBBBVVRGACCACCCACRDBBM | Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT |
 |
 |
| Motif ID: | UP00002 |
| Motif name: | Sp4_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 14 |
| Similarity score: | 0.0604694 |
Alignment:
BDHHMCGCCCCCTHVBB
---VAGGCCBBGGCVBB
| Original motif | Reverse complement motif |
| Consensus sequence: BDHHMCGCCCCCTHVBB | Consensus sequence: BVVHAGGGGGCGRDHHB |
| |
|
| Motif ID: | UP00093 |
| Motif name: | Klf7_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 14 |
| Similarity score: | 0.0606067 |
Alignment:
HBDRCCMCGCCCHHHD
BBVGCCBVGGCCTV--
| Original motif | Reverse complement motif |
| Consensus sequence: HBDRCCMCGCCCHHHD | Consensus sequence: DHHDGGGCGRGGKHBH |
| |
|
| Motif ID: | UP00539 |
| Motif name: | Gli2_v015681_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 9 |
| Number of overlap: | 14 |
| Similarity score: | 0.0606878 |
Alignment:
HVGVSAGGAGGGTCYHHHHYVH
--------VAGGCCBBGGCVBB
| Original motif | Reverse complement motif |
| Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH | Consensus sequence: DVMHHDHKGACCCTCCTSVCBH |
 |
 |
| Dataset #: 3 | Motif ID: 23 | Motif name: Egr1 |
| Original motif | Reverse complement motif |
| Consensus sequence: HGCGTGGGCGK | Consensus sequence: YCGCCCACGCH |
 |
 |
Best Matches for Motif ID 23 (Highest to Lowest)
| Motif ID: | UP00400 |
| Motif name: | Zif268 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 7 |
| Number of overlap: | 11 |
| Similarity score: | 0 |
Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
------HGCGTGGGCGK------
| Original motif | Reverse complement motif |
| Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV | Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB |
 |
 |
| Motif ID: | UP00007 |
| Motif name: | Egr1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 11 |
| Similarity score: | 0.00727533 |
Alignment:
HCCGCCCCCGCAHB
-YCGCCCACGCH--
| Original motif | Reverse complement motif |
| Consensus sequence: HCCGCCCCCGCAHB | Consensus sequence: VHTGCGGGGGCGGH |
 |
 |
| Motif ID: | UP00538 |
| Motif name: | Gli1_v015681_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.0262579 |
Alignment:
MHHHWHYTMCCHCCCACVAABVH
---------YCGCCCACGCH---
| Original motif | Reverse complement motif |
| Consensus sequence: MHHHWHYTMCCHCCCACVAABVH | Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY |
 |
 |
| Motif ID: | UP00540 |
| Motif name: | Gli3_v015681_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 11 |
| Number of overlap: | 11 |
| Similarity score: | 0.0297053 |
Alignment:
YBVDMGTGGGTGGTCKVVBVBBT
--HGCGTGGGCGK----------
| Original motif | Reverse complement motif |
| Consensus sequence: ABBBBVVRGACCACCCACRDBBM | Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT |
| |
|
| Motif ID: | UP00538 |
| Motif name: | Gli1_v016060_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 5 |
| Number of overlap: | 11 |
| Similarity score: | 0.0318144 |
Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
----HGCGTGGGCGK--------
| Original motif | Reverse complement motif |
| Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB | Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH |
 |
 |
| Dataset #: 3 | Motif ID: 24 | Motif name: SP1 |
| Original motif | Reverse complement motif |
| Consensus sequence: CCCCKCCCCC | Consensus sequence: GGGGGYGGGG |
 |
 |
Best Matches for Motif ID 24 (Highest to Lowest)
| Motif ID: | UP00021 |
| Motif name: | Zfp281_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 10 |
| Similarity score: | 0.0231018 |
Alignment:
DBCCCCCCCCCCMYC
--CCCCKCCCCC---
| Original motif | Reverse complement motif |
| Consensus sequence: DBCCCCCCCCCCMYC | Consensus sequence: GKRGGGGGGGGGGBD |
| |
|
| Motif ID: | UP00093 |
| Motif name: | Klf7_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 10 |
| Similarity score: | 0.0303207 |
Alignment:
HBDRCCMCGCCCHHHD
----CCCCKCCCCC--
| Original motif | Reverse complement motif |
| Consensus sequence: HBDRCCMCGCCCHHHD | Consensus sequence: DHHDGGGCGRGGKHBH |
| |
|
| Motif ID: | UP00033 |
| Motif name: | Zfp410_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 5 |
| Number of overlap: | 10 |
| Similarity score: | 0.0323007 |
Alignment:
HHHHDGGGGCGGDBHDV
----GGGGGYGGGG---
| Original motif | Reverse complement motif |
| Consensus sequence: BHHBHCCGCCCCDHHHH | Consensus sequence: HHHHDGGGGCGGDBHDV |
| |
|
| Motif ID: | UP00099 |
| Motif name: | Ascl2_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 10 |
| Similarity score: | 0.0340973 |
Alignment:
HVDVGGGHGGGGDBHB
--GGGGGYGGGG----
| Original motif | Reverse complement motif |
| Consensus sequence: BHVDCCCCDCCCBDBH | Consensus sequence: HVDVGGGHGGGGDBHB |
 |
 |
| Motif ID: | UP00043 |
| Motif name: | Bcl6b_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 10 |
| Similarity score: | 0.0351051 |
Alignment:
BHHHWGGGGCGGBBVH
----GGGGGYGGGG--
| Original motif | Reverse complement motif |
| Consensus sequence: HBBBCCGCCCCWHHHV | Consensus sequence: BHHHWGGGGCGGBBVH |
 |
 |
| Dataset #: 3 | Motif ID: 25 | Motif name: TFAP2A |
| Original motif | Reverse complement motif |
| Consensus sequence: GCCBBVRGS | Consensus sequence: SCMVBBGGC |
 |
 |
Best Matches for Motif ID 25 (Highest to Lowest)
| Motif ID: | UP00010 |
| Motif name: | Tcfap2b_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 9 |
| Similarity score: | 0.0115546 |
Alignment:
HHKGCCYSRGGCWAD
---GCCBBVRGS---
| Original motif | Reverse complement motif |
| Consensus sequence: DTWGCCKSMGGCRHH | Consensus sequence: HHKGCCYSRGGCWAD |
 |
 |
| Motif ID: | UP00010 |
| Motif name: | Tcfap2b_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 9 |
| Similarity score: | 0.0150447 |
Alignment:
DYGCCYBARGGCAH
--GCCBBVRGS---
| Original motif | Reverse complement motif |
| Consensus sequence: DYGCCYBARGGCAH | Consensus sequence: HTGCCMTVKGGCMD |
 |
 |
| Motif ID: | UP00005 |
| Motif name: | Tcfap2a_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 9 |
| Similarity score: | 0.0151527 |
Alignment:
WDHSCCYSRGGSRAD
---GCCBBVRGS---
| Original motif | Reverse complement motif |
| Consensus sequence: WDHSCCYSRGGSRAD | Consensus sequence: DTMSCCKSMGGSHDW |
 |
 |
| Motif ID: | UP00087 |
| Motif name: | Tcfap2c_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 9 |
| Similarity score: | 0.016909 |
Alignment:
WHHSCCYSRGGSDAD
---GCCBBVRGS---
| Original motif | Reverse complement motif |
| Consensus sequence: WHHSCCYSRGGSDAD | Consensus sequence: DTHSCCKSMGGSHHW |
 |
 |
| Motif ID: | UP00087 |
| Motif name: | Tcfap2c_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 9 |
| Similarity score: | 0.0170259 |
Alignment:
BHGCCCDAGGGCWD
--GCCBBVRGS---
| Original motif | Reverse complement motif |
| Consensus sequence: BHGCCCDAGGGCWD | Consensus sequence: HWGCCCTDGGGCDB |
 |
 |
| Dataset #: 3 | Motif ID: 26 | Motif name: MIZF |
| Original motif | Reverse complement motif |
| Consensus sequence: BAACGTCCGC | Consensus sequence: GCGGACGTTV |
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Best Matches for Motif ID 26 (Highest to Lowest)
| Motif ID: | UP00419 |
| Motif name: | Spic |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 10 |
| Similarity score: | 0 |
Alignment:
VAAAGMGGAAGTWD
BAACGTCCGC----
| Original motif | Reverse complement motif |
| Consensus sequence: VAAAGMGGAAGTWD | Consensus sequence: DWACTTCCRCTTTB |
 |
 |
| Motif ID: | UP00409 |
| Motif name: | Elf5 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 10 |
| Similarity score: | 0.00379999 |
Alignment:
BWAHSMGGAAGTWD
BAACGTCCGC----
| Original motif | Reverse complement motif |
| Consensus sequence: BWAHSMGGAAGTWD | Consensus sequence: DWACTTCCRSDTWV |
 |
 |
| Motif ID: | UP00413 |
| Motif name: | Elf4 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 5 |
| Number of overlap: | 10 |
| Similarity score: | 0.0124101 |
Alignment:
DBBHACTTCCGGKWTH
--BAACGTCCGC----
| Original motif | Reverse complement motif |
| Consensus sequence: DBBHACTTCCGGKWTH | Consensus sequence: HAWYCCGGAAGTHBBD |
 |
 |
| Motif ID: | UP00404 |
| Motif name: | Elf2 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 10 |
| Similarity score: | 0.0128348 |
Alignment:
DBBHACTTCCGGDWDB
--BAACGTCCGC----
| Original motif | Reverse complement motif |
| Consensus sequence: DBBHACTTCCGGDWDB | Consensus sequence: BDWDCCGGAAGTHBBD |
 |
 |
| Motif ID: | UP00085 |
| Motif name: | Sfpi1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 5 |
| Number of overlap: | 10 |
| Similarity score: | 0.0141516 |
Alignment:
HDACTTCCBCWTDV
BAACGTCCGC----
| Original motif | Reverse complement motif |
| Consensus sequence: BDAWGVGGAAGTDH | Consensus sequence: HDACTTCCBCWTDV |
 |
 |
| Dataset #: 3 | Motif ID: 27 | Motif name: Klf4 |
| Original motif | Reverse complement motif |
| Consensus sequence: DGGGYGKGGC | Consensus sequence: GCCYCMCCCD |
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Best Matches for Motif ID 27 (Highest to Lowest)
| Motif ID: | UP00093 |
| Motif name: | Klf7_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 10 |
| Similarity score: | 0 |
Alignment:
DHHDGGGCGRGGKHBH
---DGGGYGKGGC---
| Original motif | Reverse complement motif |
| Consensus sequence: HBDRCCMCGCCCHHHD | Consensus sequence: DHHDGGGCGRGGKHBH |
| |
|
| Motif ID: | UP00021 |
| Motif name: | Zfp281_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 10 |
| Similarity score: | 0.0153308 |
Alignment:
DBCCCCCCCCCCMYC
---GCCYCMCCCD--
| Original motif | Reverse complement motif |
| Consensus sequence: DBCCCCCCCCCCMYC | Consensus sequence: GKRGGGGGGGGGGBD |
| |
|
| Motif ID: | UP00002 |
| Motif name: | Sp4_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 10 |
| Similarity score: | 0.0186791 |
Alignment:
BDWAGGCGTGBCHHD
--DGGGYGKGGC---
| Original motif | Reverse complement motif |
| Consensus sequence: BDWAGGCGTGBCHHD | Consensus sequence: HHDGBCACGCCTWDB |
| |
|
| Motif ID: | UP00022 |
| Motif name: | Zfp740_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 10 |
| Similarity score: | 0.0218399 |
Alignment:
HVBCCCCCCCCMHHHB
--GCCYCMCCCD----
| Original motif | Reverse complement motif |
| Consensus sequence: HVBCCCCCCCCMHHHB | Consensus sequence: BHHDYGGGGGGGGBVD |
| |
|
| Motif ID: | UP00007 |
| Motif name: | Egr1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 10 |
| Similarity score: | 0.0249586 |
Alignment:
VHTGCGGGGGCGGH
GCCYCMCCCD----
| Original motif | Reverse complement motif |
| Consensus sequence: HCCGCCCCCGCAHB | Consensus sequence: VHTGCGGGGGCGGH |
| |
|
| Dataset #: 3 | Motif ID: 28 | Motif name: E2F1 |
| Original motif | Reverse complement motif |
| Consensus sequence: TTTSGCGC | Consensus sequence: GCGCSAAA |
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Best Matches for Motif ID 28 (Highest to Lowest)
| Motif ID: | UP00001 |
| Motif name: | E2F2_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 7 |
| Number of overlap: | 8 |
| Similarity score: | 0 |
Alignment:
BBBDTTGGCGCCKWVVD
---TTTSGCGC------
| Original motif | Reverse complement motif |
| Consensus sequence: HVBWYGGCGCCAADVBB | Consensus sequence: BBBDTTGGCGCCKWVVD |
 |
 |
| Motif ID: | UP00003 |
| Motif name: | E2F3_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 8 |
| Similarity score: | 0.00182028 |
Alignment:
HBHWYGGCGCCAMDVBB
------GCGCSAAA---
| Original motif | Reverse complement motif |
| Consensus sequence: HBHWYGGCGCCAMDVBB | Consensus sequence: BBBDYTGGCGCCKWDBD |
 |
 |
| Motif ID: | UP00072 |
| Motif name: | IRC900814_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 5 |
| Number of overlap: | 8 |
| Similarity score: | 0.0237639 |
Alignment:
DDHTACGACAAAWDDB
----GCGCSAAA----
| Original motif | Reverse complement motif |
| Consensus sequence: DDHTACGACAAAWDDB | Consensus sequence: BHDWTTTGTCGTAHDD |
 |
 |
| Motif ID: | UP00003 |
| Motif name: | E2F3_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 8 |
| Similarity score: | 0.0275636 |
Alignment:
WHSGCGCGCCHTDHB
-----GCGCSAAA--
| Original motif | Reverse complement motif |
| Consensus sequence: VHDADGGCGCGCSHW | Consensus sequence: WHSGCGCGCCHTDHB |
 |
 |
| Motif ID: | UP00065 |
| Motif name: | Zfp161_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 9 |
| Number of overlap: | 8 |
| Similarity score: | 0.028109 |
Alignment:
DMMDGMGCGCGCGCHD
--------GCGCSAAA
| Original motif | Reverse complement motif |
| Consensus sequence: DDGCGCGCGCRCHYRD | Consensus sequence: DMMDGMGCGCGCGCHD |
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 |
| Dataset #: 3 | Motif ID: 29 | Motif name: HIF1AARNT |
| Original motif | Reverse complement motif |
| Consensus sequence: VBACGTGV | Consensus sequence: VCACGTBV |
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Best Matches for Motif ID 29 (Highest to Lowest)
| Motif ID: | UP00097 |
| Motif name: | Mtf1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 8 |
| Similarity score: | 0 |
Alignment:
HDYTTGCACACGDHBH
-------VCACGTBV-
| Original motif | Reverse complement motif |
| Consensus sequence: DBDHCGTGTGCAAMDH | Consensus sequence: HDYTTGCACACGDHBH |
 |
 |
| Motif ID: | UP00060 |
| Motif name: | Max_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 8 |
| Similarity score: | 0.000574345 |
Alignment:
DDASCACGTGBTBVDD
---VBACGTGV-----
| Original motif | Reverse complement motif |
| Consensus sequence: DDASCACGTGBTBVDD | Consensus sequence: HHVBABCACGTGSTHD |
 |
 |
| Motif ID: | UP00050 |
| Motif name: | Bhlhb2_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 9 |
| Number of overlap: | 8 |
| Similarity score: | 0.00642455 |
Alignment:
YDYBDHTMCACGTGGADDBMDGT
-------VBACGTGV--------
| Original motif | Reverse complement motif |
| Consensus sequence: YDYBDHTMCACGTGGADDBMDGT | Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM |
 |
 |
| Motif ID: | UP00084 |
| Motif name: | Gmeb1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 5 |
| Number of overlap: | 8 |
| Similarity score: | 0.0131171 |
Alignment:
BVVDVRYACGTRYVBHB
-----VBACGTGV----
| Original motif | Reverse complement motif |
| Consensus sequence: BHBBKKACGTMMVDBVB | Consensus sequence: BVVDVRYACGTRYVBHB |
 |
 |
| Motif ID: | UP00050 |
| Motif name: | Bhlhb2_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 8 |
| Number of overlap: | 8 |
| Similarity score: | 0.014006 |
Alignment:
RDHDBVDTCACGTGASBHVHDH
-------VCACGTBV-------
| Original motif | Reverse complement motif |
| Consensus sequence: RDHDBVDTCACGTGASBHVHDH | Consensus sequence: DDHBHBSTCACGTGAHBBDHHM |
 |
 |
| Dataset #: 3 | Motif ID: 30 | Motif name: PLAG1 |
| Original motif | Reverse complement motif |
| Consensus sequence: GGGGCCCAAGGGGG | Consensus sequence: CCCCCTTGGGCCCC |
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Best Matches for Motif ID 30 (Highest to Lowest)
| Motif ID: | UP00102 |
| Motif name: | Zic1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 14 |
| Similarity score: | 0.0499525 |
Alignment:
CCCCCCCGGGGGHB
CCCCCTTGGGCCCC
| Original motif | Reverse complement motif |
| Consensus sequence: BHCCCCCGGGGGGG | Consensus sequence: CCCCCCCGGGGGHB |
 |
 |
| Motif ID: | UP00538 |
| Motif name: | Gli1_v015681_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 1 |
| Number of overlap: | 14 |
| Similarity score: | 0.0540613 |
Alignment:
BTBVTCVTGGGTGGTCMVVDVBB
---------CCCCCTTGGGCCCC
| Original motif | Reverse complement motif |
| Consensus sequence: BBBDVVRGACCACCCAVGABBAB | Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB |
 |
 |
| Motif ID: | UP00057 |
| Motif name: | Zic2_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 1 |
| Number of overlap: | 14 |
| Similarity score: | 0.0548411 |
Alignment:
VCCCCCCCGGGGGRB
-CCCCCTTGGGCCCC
| Original motif | Reverse complement motif |
| Consensus sequence: BMCCCCCGGGGGGGB | Consensus sequence: VCCCCCCCGGGGGRB |
 |
 |
| Motif ID: | UP00005 |
| Motif name: | Tcfap2a_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 1 |
| Number of overlap: | 14 |
| Similarity score: | 0.0556785 |
Alignment:
BDGHCCWBVGGKDH
GGGGCCCAAGGGGG
| Original motif | Reverse complement motif |
| Consensus sequence: HHRCCBBWGGDCDB | Consensus sequence: BDGHCCWBVGGKDH |
| |
|
| Motif ID: | UP00006 |
| Motif name: | Zic3_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 2 |
| Number of overlap: | 14 |
| Similarity score: | 0.056976 |
Alignment:
BMCCCCCGGGGGGGB
-CCCCCTTGGGCCCC
| Original motif | Reverse complement motif |
| Consensus sequence: BMCCCCCGGGGGGGB | Consensus sequence: VCCCCCCCGGGGGRB |
 |
 |
| Dataset #: 3 | Motif ID: 31 | Motif name: Pax5 |
| Original motif | Reverse complement motif |
| Consensus sequence: DGVBCABTGDWGCGKRRCSR | Consensus sequence: MSGKKRCGCWDCABTGBBCD |
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Best Matches for Motif ID 31 (Highest to Lowest)
| Motif ID: | UP00526 |
| Motif name: | Foxn1_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 20 |
| Similarity score: | 0.0499537 |
Alignment:
DDRMHBACGCGYGCGTDGBBDB
-DGVBCABTGDWGCGKRRCSR-
| Original motif | Reverse complement motif |
| Consensus sequence: DDRMHBACGCGYGCGTDGBBDB | Consensus sequence: BDVBCDACGCKCGCGTBHRKHD |
 |
 |
| Motif ID: | UP00526 |
| Motif name: | Foxn1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 20 |
| Similarity score: | 0.0520196 |
Alignment:
WHVBVVMACGCGCGTCDYHWDH
DGVBCABTGDWGCGKRRCSR--
| Original motif | Reverse complement motif |
| Consensus sequence: WHVBVVMACGCGCGTCDYHWDH | Consensus sequence: HDWHMHGACGCGCGTRBVVBHW |
 |
 |
| Motif ID: | UP00539 |
| Motif name: | Gli2_v016060_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 20 |
| Similarity score: | 0.0542764 |
Alignment:
HDBABCGBKRGYGGCGMSBHAK
-DGVBCABTGDWGCGKRRCSR-
| Original motif | Reverse complement motif |
| Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH | Consensus sequence: HDBABCGBKRGYGGCGMSBHAK |
 |
 |
| Motif ID: | UP00528 |
| Motif name: | Foxm1_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 20 |
| Similarity score: | 0.0560636 |
Alignment:
DCATDBTGHGCATKMTTBRSWR
--MSGKKRCGCWDCABTGBBCD
| Original motif | Reverse complement motif |
| Consensus sequence: MWSMBAARRATGCDCABHATGD | Consensus sequence: DCATDBTGHGCATKMTTBRSWR |
| |
|
| Motif ID: | UP00540 |
| Motif name: | Gli3_v016060_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 20 |
| Similarity score: | 0.0595671 |
Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
DGVBCABTGDWGCGKRRCSR---
| Original motif | Reverse complement motif |
| Consensus sequence: VYWVVHCRCCACMCACGAHSBHH | Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV |
 |
 |
| Dataset #: 3 | Motif ID: 32 | Motif name: ArntAhr |
| Original motif | Reverse complement motif |
| Consensus sequence: YGCGTG | Consensus sequence: CACGCM |
 |
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Best Matches for Motif ID 32 (Highest to Lowest)
| Motif ID: | UP00400 |
| Motif name: | Zif268 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 7 |
| Number of overlap: | 6 |
| Similarity score: | 0 |
Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
------YGCGTG-----------
| Original motif | Reverse complement motif |
| Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV | Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB |
| |
|
| Motif ID: | UP00002 |
| Motif name: | Sp4_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 5 |
| Number of overlap: | 6 |
| Similarity score: | 0.00183587 |
Alignment:
HHDGBCACGCCTWDB
-----CACGCM----
| Original motif | Reverse complement motif |
| Consensus sequence: BDWAGGCGTGBCHHD | Consensus sequence: HHDGBCACGCCTWDB |
| |
|
| Motif ID: | UP00060 |
| Motif name: | Max_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 5 |
| Number of overlap: | 6 |
| Similarity score: | 0.00348048 |
Alignment:
HDGTCGCGTGDCVB
----YGCGTG----
| Original motif | Reverse complement motif |
| Consensus sequence: BBGHCACGCGACDD | Consensus sequence: HDGTCGCGTGDCVB |
 |
 |
| Motif ID: | UP00527 |
| Motif name: | Foxn4_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 8 |
| Number of overlap: | 6 |
| Similarity score: | 0.00526158 |
Alignment:
TCDAMVBGACGCMAKDDDVBBD
-------CACGCM---------
| Original motif | Reverse complement motif |
| Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA | Consensus sequence: TCDAMVBGACGCMAKDDDVBBD |
 |
 |
| Motif ID: | UP00042 |
| Motif name: | Gm397_second |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 8 |
| Number of overlap: | 6 |
| Similarity score: | 0.00558171 |
Alignment:
HBGYGTGTGTGCVRVD
---YGCGTG-------
| Original motif | Reverse complement motif |
| Consensus sequence: DVMVGCACACACKCVH | Consensus sequence: HBGYGTGTGTGCVRVD |
 |
 |
| Dataset #: 3 | Motif ID: 33 | Motif name: Mycn |
| Original motif | Reverse complement motif |
| Consensus sequence: HSCACGTGGC | Consensus sequence: GCCACGTGSD |
 |
 |
Best Matches for Motif ID 33 (Highest to Lowest)
| Motif ID: | UP00060 |
| Motif name: | Max_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 10 |
| Similarity score: | 0 |
Alignment:
DDASCACGTGBTBVDD
--HSCACGTGGC----
| Original motif | Reverse complement motif |
| Consensus sequence: DDASCACGTGBTBVDD | Consensus sequence: HHVBABCACGTGSTHD |
| |
|
| Motif ID: | UP00050 |
| Motif name: | Bhlhb2_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 7 |
| Number of overlap: | 10 |
| Similarity score: | 0.00783793 |
Alignment:
ACHRBHDTCCACGTGYAHHBMHM
-------GCCACGTGSD------
| Original motif | Reverse complement motif |
| Consensus sequence: YDYBDHTMCACGTGGADDBMDGT | Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM |
| |
|
| Motif ID: | UP00050 |
| Motif name: | Bhlhb2_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 7 |
| Number of overlap: | 10 |
| Similarity score: | 0.0132858 |
Alignment:
DDHBHBSTCACGTGAHBBDHHM
------GCCACGTGSD------
| Original motif | Reverse complement motif |
| Consensus sequence: RDHDBVDTCACGTGASBHVHDH | Consensus sequence: DDHBHBSTCACGTGAHBBDHHM |
| |
|
| Motif ID: | UP00046 |
| Motif name: | Tcfe2a_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 10 |
| Similarity score: | 0.0227933 |
Alignment:
VBHHVCAGGTGCDVDHD
---GCCACGTGSD----
| Original motif | Reverse complement motif |
| Consensus sequence: VBHHVCAGGTGCDVDHD | Consensus sequence: DHDBHGCACCTGBDDVB |
 |
 |
| Motif ID: | UP00060 |
| Motif name: | Max_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 10 |
| Similarity score: | 0.0257011 |
Alignment:
BBGHCACGCGACDD
--HSCACGTGGC--
| Original motif | Reverse complement motif |
| Consensus sequence: BBGHCACGCGACDD | Consensus sequence: HDGTCGCGTGDCVB |
| |
|
| Dataset #: 3 | Motif ID: 34 | Motif name: Myc |
| Original motif | Reverse complement motif |
| Consensus sequence: VGCACGTGGH | Consensus sequence: DCCACGTGCV |
 |
 |
Best Matches for Motif ID 34 (Highest to Lowest)
| Motif ID: | UP00060 |
| Motif name: | Max_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 10 |
| Similarity score: | 0 |
Alignment:
DDASCACGTGBTBVDD
--VGCACGTGGH----
| Original motif | Reverse complement motif |
| Consensus sequence: DDASCACGTGBTBVDD | Consensus sequence: HHVBABCACGTGSTHD |
| |
|
| Motif ID: | UP00050 |
| Motif name: | Bhlhb2_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 8 |
| Number of overlap: | 10 |
| Similarity score: | 0.00631885 |
Alignment:
ACHRBHDTCCACGTGYAHHBMHM
-------DCCACGTGCV------
| Original motif | Reverse complement motif |
| Consensus sequence: YDYBDHTMCACGTGGADDBMDGT | Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM |
| |
|
| Motif ID: | UP00050 |
| Motif name: | Bhlhb2_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 7 |
| Number of overlap: | 10 |
| Similarity score: | 0.00821668 |
Alignment:
DDHBHBSTCACGTGAHBBDHHM
------DCCACGTGCV------
| Original motif | Reverse complement motif |
| Consensus sequence: RDHDBVDTCACGTGASBHVHDH | Consensus sequence: DDHBHBSTCACGTGAHBBDHHM |
| |
|
| Motif ID: | UP00046 |
| Motif name: | Tcfe2a_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 10 |
| Similarity score: | 0.0140005 |
Alignment:
DHDBHGCACCTGBDDVB
----VGCACGTGGH---
| Original motif | Reverse complement motif |
| Consensus sequence: VBHHVCAGGTGCDVDHD | Consensus sequence: DHDBHGCACCTGBDDVB |
| |
|
| Motif ID: | UP00060 |
| Motif name: | Max_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 10 |
| Similarity score: | 0.0308912 |
Alignment:
BBGHCACGCGACDD
--VGCACGTGGH--
| Original motif | Reverse complement motif |
| Consensus sequence: BBGHCACGCGACDD | Consensus sequence: HDGTCGCGTGDCVB |
| |
|
| Dataset #: 3 | Motif ID: 35 | Motif name: GABPA |
| Original motif | Reverse complement motif |
| Consensus sequence: CCGGAAGTGVV | Consensus sequence: VVCACTTCCGG |
 |
 |
Best Matches for Motif ID 35 (Highest to Lowest)
| Motif ID: | UP00013 |
| Motif name: | Gabpa_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 2 |
| Number of overlap: | 11 |
| Similarity score: | 0 |
Alignment:
BHHHACTTCCGGTHHBD
-VVCACTTCCGG-----
| Original motif | Reverse complement motif |
| Consensus sequence: HVHHACCGGAAGTDHHV | Consensus sequence: BHHHACTTCCGGTHHBD |
 |
 |
| Motif ID: | UP00410 |
| Motif name: | Elk1 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 11 |
| Similarity score: | 0.000136484 |
Alignment:
VVHBACCGGAAGTDBHD
-----CCGGAAGTGVV-
| Original motif | Reverse complement motif |
| Consensus sequence: VVHBACCGGAAGTDBHD | Consensus sequence: DHBDACTTCCGGTVHVB |
 |
 |
| Motif ID: | UP00420 |
| Motif name: | Elk3 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 6 |
| Number of overlap: | 11 |
| Similarity score: | 0.000219706 |
Alignment:
DVBBACCGGAAGYDVVV
-----CCGGAAGTGVV-
| Original motif | Reverse complement motif |
| Consensus sequence: DVBBACCGGAAGYDVVV | Consensus sequence: VBVDMCTTCCGGTVBVD |
 |
 |
| Motif ID: | UP00421 |
| Motif name: | Etv1 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 11 |
| Similarity score: | 0.000932023 |
Alignment:
MVHBACCGGAAGTVDVH
-----CCGGAAGTGVV-
| Original motif | Reverse complement motif |
| Consensus sequence: MVHBACCGGAAGTVDVH | Consensus sequence: HBDBACTTCCGGTBHVY |
 |
 |
| Motif ID: | UP00404 |
| Motif name: | Elf2 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 2 |
| Number of overlap: | 11 |
| Similarity score: | 0.00527483 |
Alignment:
DBBHACTTCCGGDWDB
-VVCACTTCCGG----
| Original motif | Reverse complement motif |
| Consensus sequence: DBBHACTTCCGGDWDB | Consensus sequence: BDWDCCGGAAGTHBBD |
| |
|
| Dataset #: 4 | Motif ID: 36 | Motif name: csGCCCCGCCCCsc |
| Original motif | Reverse complement motif |
| Consensus sequence: HVGCCCCGCCCCBB | Consensus sequence: BBGGGGCGGGGCVD |
 |
 |
Best Matches for Motif ID 36 (Highest to Lowest)
| Motif ID: | UP00093 |
| Motif name: | Klf7_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 2 |
| Number of overlap: | 14 |
| Similarity score: | 0 |
Alignment:
HBDRCCMCGCCCHHHD
-HVGCCCCGCCCCBB-
| Original motif | Reverse complement motif |
| Consensus sequence: HBDRCCMCGCCCHHHD | Consensus sequence: DHHDGGGCGRGGKHBH |
| |
|
| Motif ID: | UP00000 |
| Motif name: | Smad3_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 14 |
| Similarity score: | 0.0106621 |
Alignment:
DHHBCCCCGCCAHHBHB
-HVGCCCCGCCCCBB--
| Original motif | Reverse complement motif |
| Consensus sequence: DHHBCCCCGCCAHHBHB | Consensus sequence: BHBHDTGGCGGGGBDHD |
| |
|
| Motif ID: | UP00021 |
| Motif name: | Zfp281_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 1 |
| Number of overlap: | 14 |
| Similarity score: | 0.017761 |
Alignment:
DBCCCCCCCCCCMYC
-HVGCCCCGCCCCBB
| Original motif | Reverse complement motif |
| Consensus sequence: DBCCCCCCCCCCMYC | Consensus sequence: GKRGGGGGGGGGGBD |
| |
|
| Motif ID: | UP00022 |
| Motif name: | Zfp740_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 14 |
| Similarity score: | 0.0181905 |
Alignment:
HVBCCCCCCCCMHHHB
HVGCCCCGCCCCBB--
| Original motif | Reverse complement motif |
| Consensus sequence: HVBCCCCCCCCMHHHB | Consensus sequence: BHHDYGGGGGGGGBVD |
| |
|
| Motif ID: | UP00033 |
| Motif name: | Zfp410_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 14 |
| Similarity score: | 0.0225788 |
Alignment:
BHHBHCCGCCCCDHHHH
HVGCCCCGCCCCBB---
| Original motif | Reverse complement motif |
| Consensus sequence: BHHBHCCGCCCCDHHHH | Consensus sequence: HHHHDGGGGCGGDBHDV |
| |
|
| Dataset #: 4 | Motif ID: 37 | Motif name: tkAAATAATAtw |
| Original motif | Reverse complement motif |
| Consensus sequence: HDAAATAATAHW | Consensus sequence: WHTATTATTTDH |
 |
 |
Best Matches for Motif ID 37 (Highest to Lowest)
| Motif ID: | UP00121 |
| Motif name: | Hoxd10 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 12 |
| Similarity score: | 0.00353196 |
Alignment:
HDDDATTTTATTKVRDB
---WHTATTATTTDH--
| Original motif | Reverse complement motif |
| Consensus sequence: VDKVYAATAAAATDDDH | Consensus sequence: HDDDATTTTATTKVRDB |
| |
|
| Motif ID: | UP00244 |
| Motif name: | Tlx2 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 12 |
| Similarity score: | 0.00646023 |
Alignment:
WWDTTATTAATTHATTV
--WHTATTATTTDH---
| Original motif | Reverse complement motif |
| Consensus sequence: BAATHAATTAATAAHWW | Consensus sequence: WWDTTATTAATTHATTV |
 |
 |
| Motif ID: | UP00051 |
| Motif name: | Sox8_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 12 |
| Similarity score: | 0.0120674 |
Alignment:
DDDHDAACAATWBATDD
--HDAAATAATAHW---
| Original motif | Reverse complement motif |
| Consensus sequence: DDATBWATTGTTHHDDD | Consensus sequence: DDDHDAACAATWBATDD |
 |
 |
| Motif ID: | UP00180 |
| Motif name: | Hoxd13 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 12 |
| Similarity score: | 0.0123772 |
Alignment:
HDHHTTTTATTKKHDD
--WHTATTATTTDH--
| Original motif | Reverse complement motif |
| Consensus sequence: HDHYYAATAAAAHHHH | Consensus sequence: HDHHTTTTATTKKHDD |
| |
|
| Motif ID: | UP00037 |
| Motif name: | Zfp105_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 12 |
| Similarity score: | 0.0129559 |
Alignment:
HHHTTRTTDTTTKDH
--WHTATTATTTDH-
| Original motif | Reverse complement motif |
| Consensus sequence: HDYAAAHAAMAADHD | Consensus sequence: HHHTTRTTDTTTKDH |
| |
|
| Dataset #: 4 | Motif ID: 38 | Motif name: cccGCCCCGCCCCsb |
| Original motif | Reverse complement motif |
| Consensus sequence: BCCGCCCCGCCCCBB | Consensus sequence: BBGGGGCGGGGCGGB |
 |
 |
Best Matches for Motif ID 38 (Highest to Lowest)
| Motif ID: | UP00093 |
| Motif name: | Klf7_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 15 |
| Similarity score: | 0.00481788 |
Alignment:
HBDRCCMCGCCCHHHD
BCCGCCCCGCCCCBB-
| Original motif | Reverse complement motif |
| Consensus sequence: HBDRCCMCGCCCHHHD | Consensus sequence: DHHDGGGCGRGGKHBH |
| |
|
| Motif ID: | UP00000 |
| Motif name: | Smad3_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 15 |
| Similarity score: | 0.0108117 |
Alignment:
DHHBCCCCGCCAHHBHB
BCCGCCCCGCCCCBB--
| Original motif | Reverse complement motif |
| Consensus sequence: DHHBCCCCGCCAHHBHB | Consensus sequence: BHBHDTGGCGGGGBDHD |
| |
|
| Motif ID: | UP00021 |
| Motif name: | Zfp281_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 1 |
| Number of overlap: | 15 |
| Similarity score: | 0.0154152 |
Alignment:
GKRGGGGGGGGGGBD
BBGGGGCGGGGCGGB
| Original motif | Reverse complement motif |
| Consensus sequence: DBCCCCCCCCCCMYC | Consensus sequence: GKRGGGGGGGGGGBD |
| |
|
| Motif ID: | UP00022 |
| Motif name: | Zfp740_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 15 |
| Similarity score: | 0.018287 |
Alignment:
HVBCCCCCCCCMHHHB
BCCGCCCCGCCCCBB-
| Original motif | Reverse complement motif |
| Consensus sequence: HVBCCCCCCCCMHHHB | Consensus sequence: BHHDYGGGGGGGGBVD |
| |
|
| Motif ID: | UP00002 |
| Motif name: | Sp4_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 15 |
| Similarity score: | 0.0247447 |
Alignment:
BDWAGGCGTGBCHHD
BBGGGGCGGGGCGGB
| Original motif | Reverse complement motif |
| Consensus sequence: BDWAGGCGTGBCHHD | Consensus sequence: HHDGBCACGCCTWDB |
| |
|
| Dataset #: 4 | Motif ID: 39 | Motif name: kCAGCCAATmr |
| Original motif | Reverse complement motif |
| Consensus sequence: DCAGCCAATVR | Consensus sequence: MBATTGGCTGH |
 |
 |
Best Matches for Motif ID 39 (Highest to Lowest)
| Motif ID: | UP00033 |
| Motif name: | Zfp410_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 11 |
| Similarity score: | 0.000708728 |
Alignment:
BDDYYCATCCCATDDBD
----DCAGCCAATVR--
| Original motif | Reverse complement motif |
| Consensus sequence: DVDDATGGGATGKMDDV | Consensus sequence: BDDYYCATCCCATDDBD |
 |
 |
| Motif ID: | UP00004 |
| Motif name: | Sox14_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.00658734 |
Alignment:
BKBASACAATRGHBB
-DCAGCCAATVR---
| Original motif | Reverse complement motif |
| Consensus sequence: BKBASACAATRGHBB | Consensus sequence: BBDCMATTGTSTBRB |
 |
 |
| Motif ID: | UP00249 |
| Motif name: | Nkx2-5 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 1 |
| Number of overlap: | 11 |
| Similarity score: | 0.00805715 |
Alignment:
AAWTTMAAGTGGHTDH
-----MBATTGGCTGH
| Original motif | Reverse complement motif |
| Consensus sequence: HDADCCACTTRAAWTT | Consensus sequence: AAWTTMAAGTGGHTDH |
 |
 |
| Motif ID: | UP00147 |
| Motif name: | Nkx2-6 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 6 |
| Number of overlap: | 11 |
| Similarity score: | 0.0128272 |
Alignment:
DDADCCACTTAAVHTT
DCAGCCAATVR-----
| Original motif | Reverse complement motif |
| Consensus sequence: DDADCCACTTAAVHTT | Consensus sequence: AAHVTTAAGTGGHTDD |
 |
 |
| Motif ID: | UP00165 |
| Motif name: | Titf1 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 1 |
| Number of overlap: | 11 |
| Similarity score: | 0.0131729 |
Alignment:
AAHYTCAAGTGGBTBV
-----MBATTGGCTGH
| Original motif | Reverse complement motif |
| Consensus sequence: BVABCCACTTGAMHTT | Consensus sequence: AAHYTCAAGTGGBTBV |
 |
 |
| Dataset #: 4 | Motif ID: 40 | Motif name: kcACCTGCAgc |
| Original motif | Reverse complement motif |
| Consensus sequence: BCACCTGCABC | Consensus sequence: GBTGCAGGTGB |
 |
 |
Best Matches for Motif ID 40 (Highest to Lowest)
| Motif ID: | UP00070 |
| Motif name: | Gcm1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0 |
Alignment:
DHDVATGCGGGTHVVH
---GBTGCAGGTGB--
| Original motif | Reverse complement motif |
| Consensus sequence: HVVHACCCGCATVDHD | Consensus sequence: DHDVATGCGGGTHVVH |
 |
 |
| Motif ID: | UP00031 |
| Motif name: | Zbtb3_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.000503863 |
Alignment:
BBBAVTGCAGTGBBVDD
---GBTGCAGGTGB---
| Original motif | Reverse complement motif |
| Consensus sequence: DDBBBCACTGCABTBBB | Consensus sequence: BBBAVTGCAGTGBBVDD |
 |
 |
| Motif ID: | UP00046 |
| Motif name: | Tcfe2a_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 6 |
| Number of overlap: | 11 |
| Similarity score: | 0.000557448 |
Alignment:
DHDBHGCACCTGBDDVB
-----BCACCTGCABC-
| Original motif | Reverse complement motif |
| Consensus sequence: VBHHVCAGGTGCDVDHD | Consensus sequence: DHDBHGCACCTGBDDVB |
| |
|
| Motif ID: | UP00099 |
| Motif name: | Ascl2_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 11 |
| Similarity score: | 0.00842747 |
Alignment:
BBYVVCAGCTGCBVHHD
----BCACCTGCABC--
| Original motif | Reverse complement motif |
| Consensus sequence: BBYVVCAGCTGCBVHHD | Consensus sequence: HHDVVGCAGCTGVBKVB |
 |
 |
| Motif ID: | UP00420 |
| Motif name: | Elk3 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 5 |
| Number of overlap: | 11 |
| Similarity score: | 0.0111732 |
Alignment:
DVBBACCGGAAGYDVVV
--BCACCTGCABC----
| Original motif | Reverse complement motif |
| Consensus sequence: DVBBACCGGAAGYDVVV | Consensus sequence: VBVDMCTTCCGGTVBVD |
| |
|
| Dataset #: 4 | Motif ID: 41 | Motif name: wwAAATAATAtw |
| Original motif | Reverse complement motif |
| Consensus sequence: HDAAATAATADD | Consensus sequence: DDTATTATTTDH |
 |
 |
Best Matches for Motif ID 41 (Highest to Lowest)
| Motif ID: | UP00244 |
| Motif name: | Tlx2 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 12 |
| Similarity score: | 0.00576686 |
Alignment:
WWDTTATTAATTHATTV
--DDTATTATTTDH---
| Original motif | Reverse complement motif |
| Consensus sequence: BAATHAATTAATAAHWW | Consensus sequence: WWDTTATTAATTHATTV |
| |
|
| Motif ID: | UP00121 |
| Motif name: | Hoxd10 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 12 |
| Similarity score: | 0.00673636 |
Alignment:
HDDDATTTTATTKVRDB
---DDTATTATTTDH--
| Original motif | Reverse complement motif |
| Consensus sequence: VDKVYAATAAAATDDDH | Consensus sequence: HDDDATTTTATTKVRDB |
| |
|
| Motif ID: | UP00180 |
| Motif name: | Hoxd13 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 12 |
| Similarity score: | 0.00685179 |
Alignment:
HDHHTTTTATTKKHDD
--DDTATTATTTDH--
| Original motif | Reverse complement motif |
| Consensus sequence: HDHYYAATAAAAHHHH | Consensus sequence: HDHHTTTTATTKKHDD |
| |
|
| Motif ID: | UP00073 |
| Motif name: | Foxa2_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 12 |
| Similarity score: | 0.0108327 |
Alignment:
VVDAATAACAAAVVB
HDAAATAATADD---
| Original motif | Reverse complement motif |
| Consensus sequence: VVDAATAACAAAVVB | Consensus sequence: BVVTTTGTTATTDBB |
 |
 |
| Motif ID: | UP00134 |
| Motif name: | Hoxb13 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 12 |
| Similarity score: | 0.0121723 |
Alignment:
VDHWTTTTATTGGDKB
--DDTATTATTTDH--
| Original motif | Reverse complement motif |
| Consensus sequence: VRHCCAATAAAAWHHV | Consensus sequence: VDHWTTTTATTGGDKB |
| |
|
| Dataset #: 4 | Motif ID: 42 | Motif name: sSGTCACGTGACSs |
| Original motif | Reverse complement motif |
| Consensus sequence: SGGTCACGTGACCS | Consensus sequence: SGGTCACGTGACCS |
 |
 |
Best Matches for Motif ID 42 (Highest to Lowest)
| Motif ID: | UP00050 |
| Motif name: | Bhlhb2_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 5 |
| Number of overlap: | 14 |
| Similarity score: | 0 |
Alignment:
RDHDBVDTCACGTGASBHVHDH
----SGGTCACGTGACCS----
| Original motif | Reverse complement motif |
| Consensus sequence: RDHDBVDTCACGTGASBHVHDH | Consensus sequence: DDHBHBSTCACGTGAHBBDHHM |
| |
|
| Motif ID: | UP00060 |
| Motif name: | Max_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 1 |
| Number of overlap: | 14 |
| Similarity score: | 0.0226905 |
Alignment:
DDASCACGTGBTBVDD
--SGGTCACGTGACCS
| Original motif | Reverse complement motif |
| Consensus sequence: DDASCACGTGBTBVDD | Consensus sequence: HHVBABCACGTGSTHD |
| |
|
| Motif ID: | UP00060 |
| Motif name: | Max_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 1 |
| Number of overlap: | 14 |
| Similarity score: | 0.0240371 |
Alignment:
BBGHCACGCGACDD
SGGTCACGTGACCS
| Original motif | Reverse complement motif |
| Consensus sequence: BBGHCACGCGACDD | Consensus sequence: HDGTCGCGTGDCVB |
| |
|
| Motif ID: | UP00103 |
| Motif name: | Jundm2_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 14 |
| Similarity score: | 0.0253986 |
Alignment:
BBGATGACGTCAYCVH
-SGGTCACGTGACCS-
| Original motif | Reverse complement motif |
| Consensus sequence: BBGATGACGTCAYCVH | Consensus sequence: HVGMTGACGTCATCBB |
 |
 |
| Motif ID: | UP00020 |
| Motif name: | Atf1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 14 |
| Similarity score: | 0.0259163 |
Alignment:
DBDRTGACGTCAYHRD
-SGGTCACGTGACCS-
| Original motif | Reverse complement motif |
| Consensus sequence: DBDRTGACGTCAYHRD | Consensus sequence: DMDMTGACGTCAKHBD |
 |
 |
| Dataset #: 4 | Motif ID: 43 | Motif name: wsTACwGTAsw |
| Original motif | Reverse complement motif |
| Consensus sequence: HVTACWGTABD | Consensus sequence: DBTACWGTAVH |
 |
 |
Best Matches for Motif ID 43 (Highest to Lowest)
| Motif ID: | UP00052 |
| Motif name: | Osr2_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 11 |
| Similarity score: | 0 |
Alignment:
HHHHGCTACKGTHVHH
----DBTACWGTAVH-
| Original motif | Reverse complement motif |
| Consensus sequence: HHVHACRGTAGCHHHD | Consensus sequence: HHHHGCTACKGTHVHH |
 |
 |
| Motif ID: | UP00027 |
| Motif name: | Osr1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 11 |
| Similarity score: | 0.00480574 |
Alignment:
DHBHGCTACKGTHDHH
----DBTACWGTAVH-
| Original motif | Reverse complement motif |
| Consensus sequence: HHDHACRGTAGCHVHD | Consensus sequence: DHBHGCTACKGTHDHH |
 |
 |
| Motif ID: | UP00031 |
| Motif name: | Zbtb3_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.0165381 |
Alignment:
BBBAVTGCAGTGBBVDD
---HVTACWGTABD---
| Original motif | Reverse complement motif |
| Consensus sequence: DDBBBCACTGCABTBBB | Consensus sequence: BBBAVTGCAGTGBBVDD |
| |
|
| Motif ID: | UP00034 |
| Motif name: | Sox7_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 7 |
| Number of overlap: | 11 |
| Similarity score: | 0.0248017 |
Alignment:
HHBDHDDAACAATDRHHHHHBW
-----DBTACWGTAVH------
| Original motif | Reverse complement motif |
| Consensus sequence: HHBDHDDAACAATDRHHHHHBW | Consensus sequence: WBHHHHHMDATTGTTHDHDVHH |
| |
|
| Motif ID: | UP00023 |
| Motif name: | Sox30_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 11 |
| Similarity score: | 0.0294174 |
Alignment:
HHHHMHATTGTTBDHD
---HVTACWGTABD--
| Original motif | Reverse complement motif |
| Consensus sequence: DHDBAACAATDRHHHH | Consensus sequence: HHHHMHATTGTTBDHD |
 |
 |
| Dataset #: 4 | Motif ID: 44 | Motif name: dhACATTCTkh |
| Original motif | Reverse complement motif |
| Consensus sequence: DHACATTCTGH | Consensus sequence: HCAGAATGTHD |
 |
 |
Best Matches for Motif ID 44 (Highest to Lowest)
| Motif ID: | UP00038 |
| Motif name: | Spdef_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.00581553 |
Alignment:
VDWYTAGGATGTHVDH
---HCAGAATGTHD--
| Original motif | Reverse complement motif |
| Consensus sequence: DDBHACATCCTAKWDV | Consensus sequence: VDWYTAGGATGTHVDH |
 |
 |
| Motif ID: | UP00528 |
| Motif name: | Foxm1_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 8 |
| Number of overlap: | 11 |
| Similarity score: | 0.00582895 |
Alignment:
DCATDBTGHGCATKMTTBRSWR
-------DHACATTCTGH----
| Original motif | Reverse complement motif |
| Consensus sequence: MWSMBAARRATGCDCABHATGD | Consensus sequence: DCATDBTGHGCATKMTTBRSWR |
| |
|
| Motif ID: | UP00023 |
| Motif name: | Sox30_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.00613057 |
Alignment:
HHHHMHATTGTTBDHD
--DHACATTCTGH---
| Original motif | Reverse complement motif |
| Consensus sequence: DHDBAACAATDRHHHH | Consensus sequence: HHHHMHATTGTTBDHD |
| |
|
| Motif ID: | UP00034 |
| Motif name: | Sox7_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 6 |
| Number of overlap: | 11 |
| Similarity score: | 0.0119275 |
Alignment:
WBHHHHHMDATTGTTHDHDVHH
-----DHACATTCTGH------
| Original motif | Reverse complement motif |
| Consensus sequence: HHBDHDDAACAATDRHHHHHBW | Consensus sequence: WBHHHHHMDATTGTTHDHDVHH |
| |
|
| Motif ID: | UP00030 |
| Motif name: | Sox11_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 11 |
| Similarity score: | 0.0122803 |
Alignment:
HHBTMCTTTGTTMDDVH
--DHACATTCTGH----
| Original motif | Reverse complement motif |
| Consensus sequence: HBDDRAACAAAGRABHH | Consensus sequence: HHBTMCTTTGTTMDDVH |
| |
|
| Dataset #: 4 | Motif ID: 45 | Motif name: wbgTAAATAww |
| Original motif | Reverse complement motif |
| Consensus sequence: DBGTAAATAHD | Consensus sequence: DHTATTTACBD |
 |
 |
Best Matches for Motif ID 45 (Highest to Lowest)
| Motif ID: | UP00242 |
| Motif name: | Hoxc8 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 11 |
| Similarity score: | 0 |
Alignment:
AHDHTAATTACHHHHV
--DHTATTTACBD---
| Original motif | Reverse complement motif |
| Consensus sequence: BHDDDGTAATTAHHDT | Consensus sequence: AHDHTAATTACHHHHV |
 |
 |
| Motif ID: | UP00073 |
| Motif name: | Foxa2_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.00453517 |
Alignment:
HHWAWGTAAAYAAAVDB
---DBGTAAATAHD---
| Original motif | Reverse complement motif |
| Consensus sequence: HHWAWGTAAAYAAAVDB | Consensus sequence: BDVTTTKTTTACWTWHH |
 |
 |
| Motif ID: | UP00039 |
| Motif name: | Foxj3_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.00490457 |
Alignment:
HDHADGTAAACAAAVVH
---DBGTAAATAHD---
| Original motif | Reverse complement motif |
| Consensus sequence: HDHADGTAAACAAAVVH | Consensus sequence: DVVTTTGTTTACDTHDH |
| |
|
| Motif ID: | UP00041 |
| Motif name: | Foxj1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 5 |
| Number of overlap: | 11 |
| Similarity score: | 0.00656547 |
Alignment:
HDHRTAAACAAAHDDD
-DBGTAAATAHD----
| Original motif | Reverse complement motif |
| Consensus sequence: HDHRTAAACAAAHDDD | Consensus sequence: DDDHTTTGTTTAMHDH |
 |
 |
| Motif ID: | UP00182 |
| Motif name: | Hoxa6 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 11 |
| Similarity score: | 0.0086354 |
Alignment:
DTHHGGTAATTAYCYT
---DBGTAAATAHD--
| Original motif | Reverse complement motif |
| Consensus sequence: AMGKTAATTACCHHAD | Consensus sequence: DTHHGGTAATTAYCYT |
 |
 |
| Dataset #: 5 | Motif ID: 46 | Motif name: TFW1 |
| Original motif | Reverse complement motif |
| Consensus sequence: GTCGCG | Consensus sequence: CGCGAC |
 |
 |
Best Matches for Motif ID 46 (Highest to Lowest)
| Motif ID: | UP00065 |
| Motif name: | Zfp161_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 9 |
| Number of overlap: | 6 |
| Similarity score: | 0 |
Alignment:
GYCGCGCARBGCVB
GTCGCG--------
| Original motif | Reverse complement motif |
| Consensus sequence: GYCGCGCARBGCVB | Consensus sequence: VVGCVMTGCGCGKC |
 |
 |
| Motif ID: | UP00060 |
| Motif name: | Max_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 6 |
| Similarity score: | 0.00875457 |
Alignment:
BBGHCACGCGACDD
------CGCGAC--
| Original motif | Reverse complement motif |
| Consensus sequence: BBGHCACGCGACDD | Consensus sequence: HDGTCGCGTGDCVB |
| |
|
| Motif ID: | UP00003 |
| Motif name: | E2F3_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 6 |
| Number of overlap: | 6 |
| Similarity score: | 0.0102952 |
Alignment:
WHSGCGCGCCHTDHB
----CGCGAC-----
| Original motif | Reverse complement motif |
| Consensus sequence: VHDADGGCGCGCSHW | Consensus sequence: WHSGCGCGCCHTDHB |
| |
|
| Motif ID: | UP00526 |
| Motif name: | Foxn1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 7 |
| Number of overlap: | 6 |
| Similarity score: | 0.0119605 |
Alignment:
WHVBVVMACGCGCGTCDYHWDH
----------CGCGAC------
| Original motif | Reverse complement motif |
| Consensus sequence: WHVBVVMACGCGCGTCDYHWDH | Consensus sequence: HDWHMHGACGCGCGTRBVVBHW |
| |
|
| Motif ID: | UP00527 |
| Motif name: | Foxn4_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 10 |
| Number of overlap: | 6 |
| Similarity score: | 0.014366 |
Alignment:
VHYTCCDWCCGCGTCMMTHWHV
---------CGCGAC-------
| Original motif | Reverse complement motif |
| Consensus sequence: VDWDARRGACGCGGWHGGAKHV | Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV |
 |
 |
| Dataset #: 5 | Motif ID: 47 | Motif name: TFW2 |
| Original motif | Reverse complement motif |
| Consensus sequence: SCGCGCGG | Consensus sequence: CCGCGCGS |
 |
 |
Best Matches for Motif ID 47 (Highest to Lowest)
| Motif ID: | UP00526 |
| Motif name: | Foxn1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 8 |
| Number of overlap: | 8 |
| Similarity score: | 0 |
Alignment:
HDWHMHGACGCGCGTRBVVBHW
-------CCGCGCGS-------
| Original motif | Reverse complement motif |
| Consensus sequence: WHVBVVMACGCGCGTCDYHWDH | Consensus sequence: HDWHMHGACGCGCGTRBVVBHW |
| |
|
| Motif ID: | UP00065 |
| Motif name: | Zfp161_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 8 |
| Similarity score: | 0.00228411 |
Alignment:
VVGCVMTGCGCGKC
-----CCGCGCGS-
| Original motif | Reverse complement motif |
| Consensus sequence: GYCGCGCARBGCVB | Consensus sequence: VVGCVMTGCGCGKC |
| |
|
| Motif ID: | UP00003 |
| Motif name: | E2F3_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 7 |
| Number of overlap: | 8 |
| Similarity score: | 0.00337853 |
Alignment:
WHSGCGCGCCHTDHB
-CCGCGCGS------
| Original motif | Reverse complement motif |
| Consensus sequence: VHDADGGCGCGCSHW | Consensus sequence: WHSGCGCGCCHTDHB |
| |
|
| Motif ID: | UP00001 |
| Motif name: | E2F2_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 7 |
| Number of overlap: | 8 |
| Similarity score: | 0.00399923 |
Alignment:
HHVGCGCGCCKTDHB
-CCGCGCGS------
| Original motif | Reverse complement motif |
| Consensus sequence: VHDARGGCGCGCVHH | Consensus sequence: HHVGCGCGCCKTDHB |
 |
 |
| Motif ID: | UP00065 |
| Motif name: | Zfp161_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 5 |
| Number of overlap: | 8 |
| Similarity score: | 0.00484534 |
Alignment:
DDGCGCGCGCRCHYRD
----CCGCGCGS----
| Original motif | Reverse complement motif |
| Consensus sequence: DDGCGCGCGCRCHYRD | Consensus sequence: DMMDGMGCGCGCGCHD |
| |
|
| Dataset #: 5 | Motif ID: 48 | Motif name: TFW3 |
| Original motif | Reverse complement motif |
| Consensus sequence: CGGCYBCGCG | Consensus sequence: CGCGBMGCCG |
 |
 |
Best Matches for Motif ID 48 (Highest to Lowest)
| Motif ID: | UP00400 |
| Motif name: | Zif268 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 8 |
| Number of overlap: | 10 |
| Similarity score: | 0.0331859 |
Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
------CGCGBMGCCG-------
| Original motif | Reverse complement motif |
| Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV | Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB |
| |
|
| Motif ID: | UP00007 |
| Motif name: | Egr1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 10 |
| Similarity score: | 0.0342114 |
Alignment:
HCCGCCCCCGCAHB
--CGGCYBCGCG--
| Original motif | Reverse complement motif |
| Consensus sequence: HCCGCCCCCGCAHB | Consensus sequence: VHTGCGGGGGCGGH |
| |
|
| Motif ID: | UP00527 |
| Motif name: | Foxn4_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 12 |
| Number of overlap: | 10 |
| Similarity score: | 0.0356548 |
Alignment:
DBBVDDDRTRGCGTCBBYTHGA
-----------CGGCYBCGCG-
| Original motif | Reverse complement motif |
| Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA | Consensus sequence: TCDAMVBGACGCMAKDDDVBBD |
| |
|
| Motif ID: | UP00526 |
| Motif name: | Foxn1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 11 |
| Number of overlap: | 10 |
| Similarity score: | 0.041792 |
Alignment:
HDWHMHGACGCGCGTRBVVBHW
----------CGCGBMGCCG--
| Original motif | Reverse complement motif |
| Consensus sequence: WHVBVVMACGCGCGTCDYHWDH | Consensus sequence: HDWHMHGACGCGCGTRBVVBHW |
| |
|
| Motif ID: | UP00065 |
| Motif name: | Zfp161_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 10 |
| Similarity score: | 0.041904 |
Alignment:
DDGCGCGCGCRCHYRD
-----CGCGBMGCCG-
| Original motif | Reverse complement motif |
| Consensus sequence: DDGCGCGCGCRCHYRD | Consensus sequence: DMMDGMGCGCGCGCHD |
| |
|
| Dataset #: 5 | Motif ID: 49 | Motif name: TFF1 |
| Original motif | Reverse complement motif |
| Consensus sequence: CGGVGCCGCVGC | Consensus sequence: GCVGCGGCBCCG |
 |
 |
Best Matches for Motif ID 49 (Highest to Lowest)
| Motif ID: | UP00003 |
| Motif name: | E2F3_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 12 |
| Similarity score: | 0.0423593 |
Alignment:
HBHWYGGCGCCAMDVBB
----CGGVGCCGCVGC-
| Original motif | Reverse complement motif |
| Consensus sequence: HBHWYGGCGCCAMDVBB | Consensus sequence: BBBDYTGGCGCCKWDBD |
| |
|
| Motif ID: | UP00001 |
| Motif name: | E2F2_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 5 |
| Number of overlap: | 12 |
| Similarity score: | 0.046515 |
Alignment:
HVBWYGGCGCCAADVBB
----CGGVGCCGCVGC-
| Original motif | Reverse complement motif |
| Consensus sequence: HVBWYGGCGCCAADVBB | Consensus sequence: BBBDTTGGCGCCKWVVD |
| |
|
| Motif ID: | UP00088 |
| Motif name: | Plagl1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 12 |
| Similarity score: | 0.0472704 |
Alignment:
VBVGGGGSSCCCCHHV
GCVGCGGCBCCG----
| Original motif | Reverse complement motif |
| Consensus sequence: BHDGGGGSSCCCCBVV | Consensus sequence: VBVGGGGSSCCCCHHV |
 |
 |
| Motif ID: | UP00099 |
| Motif name: | Ascl2_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 5 |
| Number of overlap: | 12 |
| Similarity score: | 0.0476914 |
Alignment:
BBYVVCAGCTGCBVHHD
----GCVGCGGCBCCG-
| Original motif | Reverse complement motif |
| Consensus sequence: BBYVVCAGCTGCBVHHD | Consensus sequence: HHDVVGCAGCTGVBKVB |
| |
|
| Motif ID: | UP00043 |
| Motif name: | Bcl6b_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 5 |
| Number of overlap: | 12 |
| Similarity score: | 0.0508178 |
Alignment:
HBBBCCGCCCCWHHHV
GCVGCGGCBCCG----
| Original motif | Reverse complement motif |
| Consensus sequence: HBBBCCGCCCCWHHHV | Consensus sequence: BHHHWGGGGCGGBBVH |
| |
|
| Dataset #: 5 | Motif ID: 50 | Motif name: TFF11 |
| Original motif | Reverse complement motif |
| Consensus sequence: GGMGGRGGCGGVGC | Consensus sequence: GCVCCGCCMCCYCC |
 |
 |
Best Matches for Motif ID 50 (Highest to Lowest)
| Motif ID: | UP00000 |
| Motif name: | Smad3_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 1 |
| Number of overlap: | 14 |
| Similarity score: | 0.0294317 |
Alignment:
DHHBCCCCGCCAHHBHB
---GCVCCGCCMCCYCC
| Original motif | Reverse complement motif |
| Consensus sequence: DHHBCCCCGCCAHHBHB | Consensus sequence: BHBHDTGGCGGGGBDHD |
| |
|
| Motif ID: | UP00002 |
| Motif name: | Sp4_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 2 |
| Number of overlap: | 14 |
| Similarity score: | 0.0308559 |
Alignment:
BDHHMCGCCCCCTHVBB
-GCVCCGCCMCCYCC--
| Original motif | Reverse complement motif |
| Consensus sequence: BDHHMCGCCCCCTHVBB | Consensus sequence: BVVHAGGGGGCGRDHHB |
| |
|
| Motif ID: | UP00033 |
| Motif name: | Zfp410_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 14 |
| Similarity score: | 0.0379479 |
Alignment:
BHHBHCCGCCCCDHHHH
--GCVCCGCCMCCYCC-
| Original motif | Reverse complement motif |
| Consensus sequence: BHHBHCCGCCCCDHHHH | Consensus sequence: HHHHDGGGGCGGDBHDV |
| |
|
| Motif ID: | UP00043 |
| Motif name: | Bcl6b_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 2 |
| Number of overlap: | 14 |
| Similarity score: | 0.0383359 |
Alignment:
HBBBCCGCCCCWHHHV
-GCVCCGCCMCCYCC-
| Original motif | Reverse complement motif |
| Consensus sequence: HBBBCCGCCCCWHHHV | Consensus sequence: BHHHWGGGGCGGBBVH |
| |
|
| Motif ID: | UP00021 |
| Motif name: | Zfp281_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 14 |
| Similarity score: | 0.0388307 |
Alignment:
GKRGGGGGGGGGGBD
GGMGGRGGCGGVGC-
| Original motif | Reverse complement motif |
| Consensus sequence: DBCCCCCCCCCCMYC | Consensus sequence: GKRGGGGGGGGGGBD |
| |
|
| Dataset #: 5 | Motif ID: 51 | Motif name: TFM2 |
| Original motif | Reverse complement motif |
| Consensus sequence: RGRGGAGRRGGHGGDG | Consensus sequence: CHCCBCCKMCTCCKCM |
 |
 |
Best Matches for Motif ID 51 (Highest to Lowest)
| Motif ID: | UP00033 |
| Motif name: | Zfp410_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 16 |
| Similarity score: | 0.0508679 |
Alignment:
BHHBHCCGCCCCDHHHH
CHCCBCCKMCTCCKCM-
| Original motif | Reverse complement motif |
| Consensus sequence: BHHBHCCGCCCCDHHHH | Consensus sequence: HHHHDGGGGCGGDBHDV |
| |
|
| Motif ID: | UP00007 |
| Motif name: | Egr1_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 1 |
| Number of overlap: | 16 |
| Similarity score: | 0.0564739 |
Alignment:
BBHBGAGTGGGAHHDB
RGRGGAGRRGGHGGDG
| Original motif | Reverse complement motif |
| Consensus sequence: BBHBGAGTGGGAHHDB | Consensus sequence: BHHDTCCCACTCBDBV |
 |
 |
| Motif ID: | UP00400 |
| Motif name: | Zif268 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 16 |
| Similarity score: | 0.0588056 |
Alignment:
BADHBDHCGCCCMCGCAHHDBBV
----CHCCBCCKMCTCCKCM---
| Original motif | Reverse complement motif |
| Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV | Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB |
| |
|
| Motif ID: | UP00539 |
| Motif name: | Gli2_v016060_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 16 |
| Similarity score: | 0.0589361 |
Alignment:
RTHBSYCGCCMCMYVCGBTVDH
---CHCCBCCKMCTCCKCM---
| Original motif | Reverse complement motif |
| Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH | Consensus sequence: HDBABCGBKRGYGGCGMSBHAK |
| |
|
| Motif ID: | UP00022 |
| Motif name: | Zfp740_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 16 |
| Similarity score: | 0.0599837 |
Alignment:
BHHDYGGGGGGGGBVD
RGRGGAGRRGGHGGDG
| Original motif | Reverse complement motif |
| Consensus sequence: HVBCCCCCCCCMHHHB | Consensus sequence: BHHDYGGGGGGGGBVD |
| |
|
| Dataset #: 5 | Motif ID: 52 | Motif name: TFM1 |
| Original motif | Reverse complement motif |
| Consensus sequence: WTKTTTTTHWTTTTTTBT | Consensus sequence: ABAAAAAAWHAAAAARAW |
 |
 |
Best Matches for Motif ID 52 (Highest to Lowest)
| Motif ID: | UP00034 |
| Motif name: | Sox7_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 5 |
| Number of overlap: | 18 |
| Similarity score: | 0.0406097 |
Alignment:
HHBDHDDAACAATDRHHHHHBW
----ABAAAAAAWHAAAAARAW
| Original motif | Reverse complement motif |
| Consensus sequence: HHBDHDDAACAATDRHHHHHBW | Consensus sequence: WBHHHHHMDATTGTTHDHDVHH |
| |
|
| Motif ID: | UP00032 |
| Motif name: | Gata3_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 18 |
| Similarity score: | 0.0549239 |
Alignment:
HBHDVHDTCTTATCTHTDDHDV
---WTKTTTTTHWTTTTTTBT-
| Original motif | Reverse complement motif |
| Consensus sequence: BDHDDADAGATAAGADHBDHVD | Consensus sequence: HBHDVHDTCTTATCTHTDDHDV |
| |
|
| Motif ID: | UP00034 |
| Motif name: | Sox7_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 18 |
| Similarity score: | 0.0554316 |
Alignment:
VVYDDDCHCAVACAATTDBVAC
---ABAAAAAAWHAAAAARAW-
| Original motif | Reverse complement motif |
| Consensus sequence: GTVBDAATTGTVTGHGDDHKVB | Consensus sequence: VVYDDDCHCAVACAATTDBVAC |
 |
 |
| Motif ID: | UP00528 |
| Motif name: | Foxm1_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 2 |
| Number of overlap: | 18 |
| Similarity score: | 0.0582891 |
Alignment:
MWSMBAARRATGCDCABHATGD
-ABAAAAAAWHAAAAARAW---
| Original motif | Reverse complement motif |
| Consensus sequence: MWSMBAARRATGCDCABHATGD | Consensus sequence: DCATDBTGHGCATKMTTBRSWR |
| |
|
| Motif ID: | UP00032 |
| Motif name: | Gata3_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 18 |
| Similarity score: | 0.0594078 |
Alignment:
HBHDVBWGATHBTATCRVBHHH
--ABAAAAAAWHAAAAARAW--
| Original motif | Reverse complement motif |
| Consensus sequence: HBHDVBWGATHBTATCRVBHHH | Consensus sequence: HHHBBMGATAVHATCWVVDHVH |
 |
 |
| Dataset #: 5 | Motif ID: 53 | Motif name: TFM3 |
| Original motif | Reverse complement motif |
| Consensus sequence: WWHTTTTTCABAAWTTWA | Consensus sequence: TWAAWTTVTGAAAAAHWW |
 |
 |
Best Matches for Motif ID 53 (Highest to Lowest)
| Motif ID: | UP00034 |
| Motif name: | Sox7_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 5 |
| Number of overlap: | 18 |
| Similarity score: | 0.0560226 |
Alignment:
VVYDDDCHCAVACAATTDBVAC
WWHTTTTTCABAAWTTWA----
| Original motif | Reverse complement motif |
| Consensus sequence: GTVBDAATTGTVTGHGDDHKVB | Consensus sequence: VVYDDDCHCAVACAATTDBVAC |
| |
|
| Motif ID: | UP00032 |
| Motif name: | Gata3_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 18 |
| Similarity score: | 0.065044 |
Alignment:
BDHDDADAGATAAGADHBDHVD
---WWHTTTTTCABAAWTTWA-
| Original motif | Reverse complement motif |
| Consensus sequence: BDHDDADAGATAAGADHBDHVD | Consensus sequence: HBHDVHDTCTTATCTHTDDHDV |
| |
|
| Motif ID: | UP00032 |
| Motif name: | Gata3_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 1 |
| Number of overlap: | 18 |
| Similarity score: | 0.0697095 |
Alignment:
HBHDVBWGATHBTATCRVBHHH
----WWHTTTTTCABAAWTTWA
| Original motif | Reverse complement motif |
| Consensus sequence: HBHDVBWGATHBTATCRVBHHH | Consensus sequence: HHHBBMGATAVHATCWVVDHVH |
| |
|
| Motif ID: | UP00034 |
| Motif name: | Sox7_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 18 |
| Similarity score: | 0.071426 |
Alignment:
WBHHHHHMDATTGTTHDHDVHH
TWAAWTTVTGAAAAAHWW----
| Original motif | Reverse complement motif |
| Consensus sequence: HHBDHDDAACAATDRHHHHHBW | Consensus sequence: WBHHHHHMDATTGTTHDHDVHH |
| |
|
| Motif ID: | UP00528 |
| Motif name: | Foxm1_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 18 |
| Similarity score: | 0.0731314 |
Alignment:
DCATDBTGHGCATKMTTBRSWR
--WWHTTTTTCABAAWTTWA--
| Original motif | Reverse complement motif |
| Consensus sequence: MWSMBAARRATGCDCABHATGD | Consensus sequence: DCATDBTGHGCATKMTTBRSWR |
| |
|
| Dataset #: 5 | Motif ID: 54 | Motif name: TFM12 |
| Original motif | Reverse complement motif |
| Consensus sequence: CYYCBBCYYYTCCHCCTYYY | Consensus sequence: KKKAGGDGGAKKMGBBGKMG |
 |
 |
Best Matches for Motif ID 54 (Highest to Lowest)
| Motif ID: | UP00539 |
| Motif name: | Gli2_v016060_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 1 |
| Number of overlap: | 20 |
| Similarity score: | 0.0528574 |
Alignment:
HDBABCGBKRGYGGCGMSBHAK
--KKKAGGDGGAKKMGBBGKMG
| Original motif | Reverse complement motif |
| Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH | Consensus sequence: HDBABCGBKRGYGGCGMSBHAK |
| |
|
| Motif ID: | UP00540 |
| Motif name: | Gli3_v016060_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 20 |
| Similarity score: | 0.0585594 |
Alignment:
VYWVVHCRCCACMCACGAHSBHH
CYYCBBCYYYTCCHCCTYYY---
| Original motif | Reverse complement motif |
| Consensus sequence: VYWVVHCRCCACMCACGAHSBHH | Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV |
| |
|
| Motif ID: | UP00538 |
| Motif name: | Gli1_v016060_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 20 |
| Similarity score: | 0.0625384 |
Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
-KKKAGGDGGAKKMGBBGKMG--
| Original motif | Reverse complement motif |
| Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB | Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH |
| |
|
| Motif ID: | UP00528 |
| Motif name: | Foxm1_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 1 |
| Number of overlap: | 20 |
| Similarity score: | 0.0639685 |
Alignment:
DCATDBTGHGCATKMTTBRSWR
--KKKAGGDGGAKKMGBBGKMG
| Original motif | Reverse complement motif |
| Consensus sequence: MWSMBAARRATGCDCABHATGD | Consensus sequence: DCATDBTGHGCATKMTTBRSWR |
| |
|
| Motif ID: | UP00539 |
| Motif name: | Gli2_v015681_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 20 |
| Similarity score: | 0.0648037 |
Alignment:
DVMHHDHKGACCCTCCTSVCBH
CYYCBBCYYYTCCHCCTYYY--
| Original motif | Reverse complement motif |
| Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH | Consensus sequence: DVMHHDHKGACCCTCCTSVCBH |
| |
|
| Dataset #: 5 | Motif ID: 55 | Motif name: TFM13 |
| Original motif | Reverse complement motif |
| Consensus sequence: ATKAAWTTTTRMAABAHHTW | Consensus sequence: WAHHTVTTYKAAAAWTTRAT |
 |
 |
Best Matches for Motif ID 55 (Highest to Lowest)
| Motif ID: | UP00034 |
| Motif name: | Sox7_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 20 |
| Similarity score: | 0.0556257 |
Alignment:
VVYDDDCHCAVACAATTDBVAC
-WAHHTVTTYKAAAAWTTRAT-
| Original motif | Reverse complement motif |
| Consensus sequence: GTVBDAATTGTVTGHGDDHKVB | Consensus sequence: VVYDDDCHCAVACAATTDBVAC |
| |
|
| Motif ID: | UP00032 |
| Motif name: | Gata3_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 2 |
| Number of overlap: | 20 |
| Similarity score: | 0.0642682 |
Alignment:
HHHBBMGATAVHATCWVVDHVH
-ATKAAWTTTTRMAABAHHTW-
| Original motif | Reverse complement motif |
| Consensus sequence: HBHDVBWGATHBTATCRVBHHH | Consensus sequence: HHHBBMGATAVHATCWVVDHVH |
| |
|
| Motif ID: | UP00034 |
| Motif name: | Sox7_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 20 |
| Similarity score: | 0.064945 |
Alignment:
WBHHHHHMDATTGTTHDHDVHH
--WAHHTVTTYKAAAAWTTRAT
| Original motif | Reverse complement motif |
| Consensus sequence: HHBDHDDAACAATDRHHHHHBW | Consensus sequence: WBHHHHHMDATTGTTHDHDVHH |
| |
|
| Motif ID: | UP00032 |
| Motif name: | Gata3_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 20 |
| Similarity score: | 0.0651681 |
Alignment:
HBHDVHDTCTTATCTHTDDHDV
ATKAAWTTTTRMAABAHHTW--
| Original motif | Reverse complement motif |
| Consensus sequence: BDHDDADAGATAAGADHBDHVD | Consensus sequence: HBHDVHDTCTTATCTHTDDHDV |
| |
|
| Motif ID: | UP00098 |
| Motif name: | Rfx3_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 20 |
| Similarity score: | 0.0670788 |
Alignment:
BDBBVBVGTAWCCAAGVBHBAGB
-ATKAAWTTTTRMAABAHHTW--
| Original motif | Reverse complement motif |
| Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB | Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB |
 |
 |
| Dataset #: 5 | Motif ID: 56 | Motif name: TFM11 |
| Original motif | Reverse complement motif |
| Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA | Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH |
 |
 |
Best Matches for Motif ID 56 (Highest to Lowest)
| Motif ID: | UP00098 |
| Motif name: | Rfx3_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 23 |
| Similarity score: | 0.0760601 |
Alignment:
--HDTBHHCCHTAGCAACVVDHHHH
HDWVAAAHAAAAAMAAAMWWWHBWA-
| Original motif | Reverse complement motif |
| Consensus sequence: HDTBHHCCHTAGCAACVVDHHHH | Consensus sequence: HHHHDVVGTTGCTAHGGDHBAHH |
 |
 |
| Motif ID: | UP00540 |
| Motif name: | Gli3_v016060_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 23 |
| Similarity score: | 0.0803516 |
Alignment:
--VYWVVHCRCCACMCACGAHSBHH
HDWVAAAHAAAAAMAAAMWWWHBWA--
| Original motif | Reverse complement motif |
| Consensus sequence: VYWVVHCRCCACMCACGAHSBHH | Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV |
| |
|
| Motif ID: | UP00528 |
| Motif name: | Foxm1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 2 |
| Number of overlap: | 23 |
| Similarity score: | 0.0808735 |
Alignment:
HADTBVADGATGCATCMTGMVHB--
-HDWVAAAHAAAAAMAAAMWWWHBWA
| Original motif | Reverse complement motif |
| Consensus sequence: HADTBVADGATGCATCMTGMVHB | Consensus sequence: VHVRCAYGATGCATCDTVVADTH |
 |
 |
| Motif ID: | UP00538 |
| Motif name: | Gli1_v015681_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 23 |
| Similarity score: | 0.0812213 |
Alignment:
--MHHHWHYTMCCHCCCACVAABVH
HDWVAAAHAAAAAMAAAMWWWHBWA--
| Original motif | Reverse complement motif |
| Consensus sequence: MHHHWHYTMCCHCCCACVAABVH | Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY |
| |
|
| Motif ID: | UP00098 |
| Motif name: | Rfx3_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 23 |
| Similarity score: | 0.0813067 |
Alignment:
BDBBVBVGTAWCCAAGVBHBAGB--
HDWVAAAHAAAAAMAAAMWWWHBWA
| Original motif | Reverse complement motif |
| Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB | Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB |
| |
|