**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 5 Number of top significant motifs: 5 Number of best matches: 5 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Homo Sapiens Motif tree: Yes Combined similar motifs: Yes Output file type: All Output file format: PDF Input files and motif counts File name Count of motifs Dataset # DREME_DM230.txt 1 1 MEME_DM230.txt 20 2 PScanChIP_DM230.txt 14 3 RSAT_peak-motifs_DM230.txt 10 4 W-ChIPMotifs_DM05.txt 11 5 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** *************************************************************** Combined Motifs for Top Best Match Motif ID 1 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 1 csGCCCCGCCCCsc Original Motif Reverse Complement GGCGGGGC BBGGGGCGGGGCVD BBGGGGCGGGGCVD Direction: Forward Position #: 5 Overlap #: 8 Alignment: ----GGCGGGGC-- BBGGGGCGGGGCVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Original Motif Reverse Complement BBGGGGCGGGGCVD BBGGGGCGGGGCGGB BBGGGGCGGGGCGGGGCVD Direction: Forward Position #: 6 Overlap #: 10 Alignment: -----BBGGGGCGGGGCVD BBGGGGCGGGGCGGB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Original Motif HVGCCCCGCCCCGCCCCBB CSKCCCCGCCCCSY HVGCCCCSCSCCSCSCCCCSY Direction: Forward Position #: 8 Overlap #: 12 Alignment: HVGCCCCGCCCCGCCCCBB-- -------CSKCCCCGCCCCSY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Klf4 Combined Motif Original Motif Reverse Complement HVGCCCCSCSCCSCSCCCCSY GCCYCMCCCD HVGCCCCSSCCCCCCCCHCSY Direction: Forward Position #: 9 Overlap #: 10 Alignment: HVGCCCCSCSCCSCSCCCCSY --------GCCYCMCCCD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Original Motif MSGDGGGGGGGGSSGGGGCVD BBVGCCBVGGCCTV MSGDGGGGGGGGSCGGGGCCTV Direction: Forward Position #: 9 Overlap #: 13 Alignment: MSGDGGGGGGGGSSGGGGCVD- --------BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif MSGDGGGGGGGGSCGGGGCCTV DGVBCABTGDWGCGKRRCSR MSGDGGGGGDGVBCDVKGCHGVGKRRCSR Direction: Forward Position #: 10 Overlap #: 13 Alignment: MSGDGGGGGGGGSCGGGGCCTV------- ---------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 2 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 TFM12 Original Motif Original Motif RGRAGARRGARRAR RAGKGMAGVRRGSRCASAGV RAGRGVAGARRGVRVARAGV Direction: Forward Position #: 4 Overlap #: 14 Alignment: ---RGRAGARRGARRAR--- RAGKGMAGVRRGSRCASAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif RAGRGVAGARRGVRVARAGV DGVBCABTGDWGCGKRRCSR RAGRGVAGDRRBVRVHGADGCGKRRCSR Direction: Forward Position #: 9 Overlap #: 12 Alignment: RAGRGVAGARRGVRVARAGV-------- --------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Original Motif MSGKKRCGCHTCHVKVBMMDCTBCKCTK CHHCHBTCCTSCYTCTGC MSGKKRCGCHTCHVHVHHHBCTSCBYYTGC Direction: Forward Position #: 13 Overlap #: 16 Alignment: MSGKKRCGCHTCHVKVBMMDCTBCKCTK-- ------------CHHCHBTCCTSCYTCTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif MSGKKRCGCHTCHVHVHHHBCTSCBYYTGC KTTTTTTKTTTTTTDAAB MSGKKRCGCHTCHVHVHHHBCTSCBTTTKYTKTTTTTTDAAB Direction: Forward Position #: 25 Overlap #: 6 Alignment: MSGKKRCGCHTCHVHVHHHBCTSCBYYTGC------------ ------------------------KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif MSGKKRCGCHTCHVHVHHHBCTSCBTTTKYTKTTTTTTDAAB TTTTTTTKTTKTTTAATTHW MSGKKRCGCHTCHVHVHHHTYTKYTTTTTTTKTWWTTHWAAB Direction: Forward Position #: 20 Overlap #: 20 Alignment: MSGKKRCGCHTCHVHVHHHBCTSCBTTTKYTKTTTTTTDAAB -------------------TTTTTTTKTTKTTTAATTHW--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 3 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 TFM3 Original Motif Reverse Complement AWAAAWTWAAASWA BTTHAAAAAAYAAAAAAR BTTHAWAAAAYAAAAAAA Direction: Forward Position #: 5 Overlap #: 14 Alignment: ----AWAAAWTWAAASWA BTTHAAAAAAYAAAAAAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Reverse Complement Original Motif TTTTTTTMTTTTWTDAAB TTTTTTTKTTKTTTAATTHW TTTTTTTKTTTTTTWATTHTWTDAAB Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------TTTTTTTMTTTTWTDAAB TTTTTTTKTTKTTTAATTHW------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Reverse Complement Original Motif BTTHAWAHAATWAAAAAARAAAAAAA AAATRWTAAAATCA BTTHAWAHAATAAAWRWWAAAAWMAA Direction: Forward Position #: 12 Overlap #: 14 Alignment: BTTHAWAHAATWAAAAAARAAAAAAA -----------AAATRWTAAAATCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Original Motif Original Motif BTTHAWAHAATAAAWRWWAAAAWMAA AWTAAATAYAATTT BTTHAWAHAAWWAAAWATAAWWTMAA Direction: Forward Position #: 10 Overlap #: 14 Alignment: BTTHAWAHAATAAAWRWWAAAAWMAA ---------AWTAAATAYAATTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Reverse Complement TTYAWWTTATWTTTWWTTHTWTDAAB TTTDAWATATHATT TTYAWWTTATDTTWWATWTWWTTAAB Direction: Forward Position #: 10 Overlap #: 14 Alignment: TTYAWWTTATWTTTWWTTHTWTDAAB ---------TTTDAWATATHATT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 4 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Motif 5 Original Motif Reverse Complement AAAAWTTRCWT AAATTKTATTTAWT AWTAAAWTTTAYTT Direction: Backward Position #: 4 Overlap #: 11 Alignment: AAAAWTTRCWT--- AAATTKTATTTAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Original Motif AAMTAAAWTTTAWT AATHATATWTHAAA AAMTAAATTWTAWTTHAAA Direction: Forward Position #: 6 Overlap #: 9 Alignment: AAMTAAAWTTTAWT----- -----AATHATATWTHAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Reverse Complement Reverse Complement TTTDAAWTAWAATTTAYTT TGATTTTAWKATTT TGATTTTAWDWWTWATTTAYTT Direction: Forward Position #: 4 Overlap #: 11 Alignment: ---TTTDAAWTAWAATTTAYTT TGATTTTAWKATTT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Original Motif Original Motif TGATTTTAWDWWTWATTTAYTT ACAAWTRATTTTGA TGATTTTAMAAWTDATTTWKWT Direction: Forward Position #: 8 Overlap #: 14 Alignment: TGATTTTAWDWWTWATTTAYTT -------ACAAWTRATTTTGA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww Combined Motif Original Motif Original Motif TGATTTTAMAAWTDATTTWKWT DBGTAAATAHD TGATTTTAMWHDTAAWTWWDWT Direction: Forward Position #: 10 Overlap #: 11 Alignment: TGATTTTAMAAWTDATTTWKWT ---------DBGTAAATAHD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 5 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Motif 3 Reverse Complement Reverse Complement AAATTKTATTTAWT TWSTTTWAWTTTWT WAATTTTATTTWWT Direction: Backward Position #: 1 Overlap #: 14 Alignment: AAATTKTATTTAWT TWSTTTWAWTTTWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Reverse Complement WAATTTTATTTWWT TGATTTTAWKATTT TRATTTTAWTWTTT Direction: Forward Position #: 1 Overlap #: 14 Alignment: WAATTTTATTTWWT TGATTTTAWKATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Original Motif Reverse Complement TRATTTTAWTWTTT WWTAKTTCDKAATT WDWWTTTMWKAWTT Direction: Forward Position #: 1 Overlap #: 14 Alignment: TRATTTTAWTWTTT WWTAKTTCDKAATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Reverse Complement Reverse Complement AAWTRWRAAAWWDW BTTHAAAAAAYAAAAAAR BTTHAAAAWWHAAAAAAADW Direction: Forward Position #: 7 Overlap #: 12 Alignment: ------AAWTRWRAAAWWDW BTTHAAAAAAYAAAAAAR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Reverse Complement BTTHAAAAWWHAAAAAAADW WHAATTAAARAARAAAAAAA BTTHAAAAWHAAWWAAAAAARAAAAAAA Direction: Forward Position #: 9 Overlap #: 12 Alignment: BTTHAAAAWWHAAAAAAADW-------- --------WHAATTAAARAARAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 6 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 TFM13 Reverse Complement Original Motif WWTAKTTCDKAATT TTTTTTTKTTKTTTAATTHW HWTTTWTTTYTTAATTTTTT Direction: Backward Position #: 3 Overlap #: 14 Alignment: ----WWTAKTTCDKAATT-- TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif HWTTTWTTTYTTAATTTTTT KTTTTTTKTTTTTTDAAB HWTTTWTTTTTTWWTKTTTTTTDAAB Direction: Forward Position #: 9 Overlap #: 12 Alignment: HWTTTWTTTYTTAATTTTTT------ --------KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Reverse Complement Original Motif BTTHAAAAAARAWWAAAAAAWAAAWH AWTAAATAYAATTT BTTHAAAAAARAWTAAAWAHAAWWTH Direction: Forward Position #: 12 Overlap #: 14 Alignment: BTTHAAAAAARAWWAAAAAAWAAAWH -----------AWTAAATAYAATTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Original Motif Original Motif BTTHAAAAAARAWTAAAWAHAAWWTH AAATRWTAAAATCA BTTHAAAAAARAAWWAATAAAATYWH Direction: Forward Position #: 12 Overlap #: 14 Alignment: BTTHAAAAAARAWTAAAWAHAAWWTH -----------AAATRWTAAAATCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Original Motif DWKATTTTATTWWTTKTTTTTTDAAB AATHATATWTHAAA DWKATTTTATTAWTTWTWTTTBAAAB Direction: Forward Position #: 12 Overlap #: 14 Alignment: DWKATTTTATTWWTTKTTTTTTDAAB -----------AATHATATWTHAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 7 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 csGCCCCGCCCCsc Original Motif Original Motif CSKCCCCGCCCCSY HVGCCCCGCCCCBB CSGCCCCGCCCCSB Direction: Forward Position #: 1 Overlap #: 14 Alignment: CSKCCCCGCCCCSY HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Reverse Complement Reverse Complement VSGGGGCGGGGCSG BBGGGGCGGGGCGGB BBGGGGCGGGGCGGGGCSG Direction: Forward Position #: 6 Overlap #: 10 Alignment: -----VSGGGGCGGGGCSG BBGGGGCGGGGCGGB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Reverse Complement BBGGGGCGGGGCGGGGCSG MSGKKRCGCWDCABTGBBCD BBGGGVSGGGGCGSDGCVBTGBBCD Direction: Forward Position #: 6 Overlap #: 14 Alignment: BBGGGGCGGGGCGGGGCSG------ -----MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Original Motif HGVBCABBGCHSCGCCCCSVCCCBB CHHCHBTCCTSCYTCTGC HGVBCABBGCHBHSMYYCSDCCCBBTGC Direction: Forward Position #: 11 Overlap #: 15 Alignment: HGVBCABBGCHSCGCCCCSVCCCBB--- ----------CHHCHBTCCTSCYTCTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Original Motif GCABVGGGDSGMKRSDBDGCVBTGBBCD BBVGCCBVGGCCTV GCABVGGGDSGMBVSGSBKCGGYSTBCD Direction: Forward Position #: 13 Overlap #: 14 Alignment: GCABVGGGDSGMKRSDBDGCVBTGBBCD ------------BBVGCCBVGGCCTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 8 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Motif 3 Reverse Complement Reverse Complement TGATTTTAWKATTT TWSTTTWAWTTTWT TGATTTTAWTWTTT Direction: Backward Position #: 1 Overlap #: 14 Alignment: TGATTTTAWKATTT TWSTTTWAWTTTWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Reverse Complement Reverse Complement AAAWAWTAAAATCA WHAATTAAARAARAAAAAAA WHAATTAAAWAAWAAAAWMA Direction: Forward Position #: 7 Overlap #: 14 Alignment: ------AAAWAWTAAAATCA WHAATTAAARAARAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Reverse Complement Reverse Complement TYWTTTTWTTWTTTAATTDW AAATTKTATTTAWT TYWTTTTAWWTTTTAWTTAWT Direction: Forward Position #: 8 Overlap #: 13 Alignment: TYWTTTTWTTWTTTAATTDW- -------AAATTKTATTTAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif TYWTTTTAWWTTTTAWTTAWT KTTTTTTKTTTTTTDAAB TYWTTTTAWWTTTTWWTTWTTTDAAB Direction: Forward Position #: 9 Overlap #: 13 Alignment: TYWTTTTAWWTTTTAWTTAWT----- --------KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Original Motif Reverse Complement TYWTTTTAWWTTTTWWTTWTTTDAAB WWTAKTTCDKAATT TYWTTTTAWWTTTTWKTTYTTWAWWB Direction: Forward Position #: 12 Overlap #: 14 Alignment: TYWTTTTAWWTTTTWWTTWTTTDAAB -----------WWTAKTTCDKAATT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 9 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 TFM13 Reverse Complement Original Motif TTTDAWATATHATT TTTTTTTKTTKTTTAATTHW TTTTTTTDWTWTWTDATTHW Direction: Forward Position #: 5 Overlap #: 14 Alignment: ----TTTDAWATATHATT-- TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Reverse Complement WHAATDAWAWAWDAAAAAAA BTTHAAAAAAYAAAAAAR WHAATDAWVTWWRAAAAAAAAAAAAR Direction: Forward Position #: 9 Overlap #: 12 Alignment: WHAATDAWAWAWDAAAAAAA------ --------BTTHAAAAAAYAAAAAAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Original Motif WHAATDAWVTWWRAAAAAAAAAAAAR AWAAAWTWAAASWA WHAATDAWVTWAWAAAAWAAAARAAR Direction: Forward Position #: 12 Overlap #: 14 Alignment: WHAATDAWVTWWRAAAAAAAAAAAAR -----------AWAAAWTWAAASWA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Original Motif Original Motif WHAATDAWVTWAWAAAAWAAAARAAR AATTYDGAARTAWW AATTYWBAADTAWWTWAWAAAAWAAAARAAR Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----WHAATDAWVTWAWAAAAWAAAARAAR AATTYDGAARTAWW----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Reverse Complement Reverse Complement KTTKTTTTWTTTTWTWAWWTADTTBWKAATT AAATTKTATTTAWT KTTKTTTTWTTTTAAAWTKTATTTAWTAATT Direction: Forward Position #: 14 Overlap #: 14 Alignment: KTTKTTTTWTTTTWTWAWWTADTTBWKAATT -------------AAATTKTATTTAWT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 10 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 Motif 11 Reverse Complement Original Motif AWTTATGAAA ATTTWATGAAA WTTTATGAAAA Direction: Backward Position #: 1 Overlap #: 10 Alignment: -AWTTATGAAA ATTTWATGAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Original Motif Original Motif WTTTATGAAAA AATTYDGAARTAWW WWTTHTGAAAAAWW Direction: Forward Position #: 1 Overlap #: 11 Alignment: WTTTATGAAAA--- AATTYDGAARTAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Original Motif WWTTHTGAAAAAWW AAATRWTAAAATCA AAWTDWKAAAAWMA Direction: Forward Position #: 1 Overlap #: 14 Alignment: WWTTHTGAAAAAWW AAATRWTAAAATCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 17 Original Motif Original Motif AAWTDWKAAAAWMA AAAAATGAAT AAAWATGAAWAWMA Direction: Forward Position #: 1 Overlap #: 10 Alignment: AAWTDWKAAAAWMA AAAAATGAAT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Original Motif Original Motif AAAWATGAAWAWMA AWTAAATAYAATTT AAAWAWKAAAWAYAATTT Direction: Forward Position #: 5 Overlap #: 10 Alignment: AAAWATGAAWAWMA---- ----AWTAAATAYAATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 11 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 11 Motif 8 Reverse Complement Original Motif TTTCATWAAAT AAATRWTAAAATCA AAWTDHWWAAAWYA Direction: Forward Position #: 3 Overlap #: 11 Alignment: --TTTCATWAAAT- AAATRWTAAAATCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Reverse Complement Reverse Complement TKWTTTWWDDAWTT AAATTKTATTTAWT AAATTTTATTTAWTDAWTT Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----TKWTTTWWDDAWTT AAATTKTATTTAWT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif AAATTTTATTTAWTDAWTT KTTTTTTKTTTTTTDAAB AAATTTTWTTTWTTDWTTTTTDAAB Direction: Forward Position #: 8 Overlap #: 12 Alignment: AAATTTTATTTAWTDAWTT------ -------KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 18 Reverse Complement Original Motif BTTHAAAAAWDAAWAAAWAAAATTT TTAGWTWATAA TTAGTTWAWAAAWDAAWAAAWAAAATTT Direction: Forward Position #: 4 Overlap #: 8 Alignment: ---BTTHAAAAAWDAAWAAAWAAAATTT TTAGWTWATAA----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Combined Motif Reverse Complement Reverse Complement AAATTTTWTTTWTTHWTTTWTWAACTAA TTTTATTGTYAT AAWTTTWTTKTTATHWTTTWTWAACTAA Direction: Forward Position #: 3 Overlap #: 12 Alignment: AAATTTTWTTTWTTHWTTTWTWAACTAA --TTTTATTGTYAT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 12 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 12 TFM13 Reverse Complement Original Motif TTTGTTTT TTTTTTTKTTKTTTAATTHW TTAATTHWTTTGTTTTTTTT Direction: Backward Position #: 9 Overlap #: 8 Alignment: ----TTTGTTTT-------- TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif TTAATTHWTTTGTTTTTTTT KTTTTTTKTTTTTTDAAB TTAATTHWTTTKTTTTTTTTTTDAAB Direction: Forward Position #: 9 Overlap #: 12 Alignment: TTAATTHWTTTGTTTTTTTT------ --------KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 17 Combined Motif Original Motif Reverse Complement TTAATTHWTTTKTTTTTTTTTTDAAB ATTCATTTTT TTAWTYATTTTTTTTTTTTTTTDAAB Direction: Forward Position #: 3 Overlap #: 10 Alignment: TTAATTHWTTTKTTTTTTTTTTDAAB --ATTCATTTTT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Combined Motif Original Motif Reverse Complement TTAWTYATTTTTTTTTTTTTTTDAAB TTTTATTGTYAT TTAWTYATTTTTWTTKTTWTTTDAAB Direction: Forward Position #: 9 Overlap #: 12 Alignment: TTAWTYATTTTTTTTTTTTTTTDAAB --------TTTTATTGTYAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Original Motif Original Motif TTAWTYATTTTTWTTKTTWTTTDAAB ACAAWTRATTTTGA AYWAWTVATTTTKATTKTTWTTTDAAB Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TTAWTYATTTTTWTTKTTWTTTDAAB ACAAWTRATTTTGA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 13 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 13 Motif 20 Original Motif Original Motif AAAGATTT TTMAAAGATTT AAAGATTTTTM Direction: Backward Position #: 1 Overlap #: 8 Alignment: ---AAAGATTT TTMAAAGATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Reverse Complement Reverse Complement YAAAAATCTTT TCAAAATKAWTTGT TMAAAATBWTTTGT Direction: Forward Position #: 1 Overlap #: 11 Alignment: YAAAAATCTTT--- TCAAAATKAWTTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Reverse Complement Original Motif ACAAAWBATTTTYA AAATRWTAAAATCA AMAWAWTAWWWTCA Direction: Forward Position #: 1 Overlap #: 14 Alignment: ACAAAWBATTTTYA AAATRWTAAAATCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Reverse Complement Reverse Complement TGAWWWTAWTWTYT TWTAATCTAWGAA TTKAATHTAWGAWYT Direction: Forward Position #: 2 Overlap #: 12 Alignment: -TGAWWWTAWTWTYT TWTAATCTAWGAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Original Motif Reverse Complement TTKAATHTAWGAWYT AAATTKTATTTAWT AAATTTTAWTTWATGAWYT Direction: Forward Position #: 5 Overlap #: 10 Alignment: ----TTKAATHTAWGAWYT AAATTKTATTTAWT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 14 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 14 Motif 5 Reverse Complement Reverse Complement TTATTTWT AAATTKTATTTAWT TTTATTTATAAATT Direction: Backward Position #: 2 Overlap #: 8 Alignment: -----TTATTTWT- AAATTKTATTTAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 17 Original Motif Reverse Complement TTTATTTATAAATT ATTCATTTTT ATTYATTTWTAAATT Direction: Forward Position #: 2 Overlap #: 9 Alignment: -TTTATTTATAAATT ATTCATTTTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Reverse Complement Reverse Complement AATTTAWAAATKAAT WHAATTAAARAARAAAAAAA WHAATTAAAWWWAAAAAWDAAT Direction: Forward Position #: 8 Overlap #: 13 Alignment: -------AATTTAWAAATKAAT WHAATTAAARAARAAAAAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif ATTDWTTTTTWWWTTTAATTDW KTTTTTTKTTTTTTDAAB ATTDWTTTTTWTTTTTDWTTTTTDAAB Direction: Forward Position #: 10 Overlap #: 13 Alignment: ATTDWTTTTTWWWTTTAATTDW----- ---------KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Combined Motif Original Motif Reverse Complement ATTDWTTTTTWTTTTTDWTTTTTDAAB TTTTATTGTYAT ATTTTWTTKTTWTTTTDWTTTTTDAAB Direction: Forward Position #: 2 Overlap #: 12 Alignment: ATTDWTTTTTWTTTTTDWTTTTTDAAB -TTTTATTGTYAT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 15 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 TFM13 Reverse Complement Original Motif TTTTATTGTYAT TTTTTTTKTTKTTTAATTHW TTAATTHWTTTTWTTGTTWT Direction: Backward Position #: 9 Overlap #: 12 Alignment: TTTTATTGTYAT-------- TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif TTAATTHWTTTTWTTGTTWT KTTTTTTKTTTTTTDAAB TTAATTHWTTTTTTTKTTTTTTDAAB Direction: Forward Position #: 9 Overlap #: 12 Alignment: TTAATTHWTTTTWTTGTTWT------ --------KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Reverse Complement Original Motif BTTHAAAAAAYAAAAAAAWHAATTAA AAATRWTAAAATCA AAVTDWWAAAAWCAAAAAAAWHAATTAA Direction: Forward Position #: 3 Overlap #: 12 Alignment: --BTTHAAAAAAYAAAAAAAWHAATTAA AAATRWTAAAATCA-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Reverse Complement Reverse Complement TTAATTDWTTTTTTTGWTTTTWWDABTT AAATTKTATTTAWT TTAATTDWTTWWWTTKTWTTTAWTABTT Direction: Forward Position #: 11 Overlap #: 14 Alignment: TTAATTDWTTTTTTTGWTTTTWWDABTT ----------AAATTKTATTTAWT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Original Motif AAVTAWTAAAWAYAAWWWAAWHAATTAA AWAAAWTWAAASWA AAVTAWTAAAWAMAAWAWWAAAARTWAA Direction: Forward Position #: 13 Overlap #: 14 Alignment: AAVTAWTAAAWAYAAWWWAAWHAATTAA ------------AWAAAWTWAAASWA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 16 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Motif 5 Reverse Complement Original Motif TCAAAATKAWTTGT AWTAAATAYAATTT WHWAAATDHAWTKT Direction: Backward Position #: 1 Overlap #: 14 Alignment: TCAAAATKAWTTGT AWTAAATAYAATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Original Motif Original Motif WHWAAATDHAWTKT AATHATATWTHAAA WHWAAAWDHAWWTTTHAAA Direction: Forward Position #: 6 Overlap #: 9 Alignment: WHWAAATDHAWTKT----- -----AATHATATWTHAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Reverse Complement Reverse Complement TTTDAAAWWTHDWTTTWDW WHTATTATTTDH TTTDAAAWATAWWWTTWDW Direction: Forward Position #: 8 Overlap #: 12 Alignment: TTTDAAAWWTHDWTTTWDW -------WHTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Original Motif Reverse Complement TTTDAAAWATAWWWTTWDW DDTATTATTTDH TTTDAAAWHTATTATTTDW Direction: Forward Position #: 8 Overlap #: 12 Alignment: TTTDAAAWATAWWWTTWDW -------DDTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Reverse Complement TTTDAAAWHTATTATTTDW TGATTTTAWKATTT TGWTTTWAWKATWTTATTTDW Direction: Forward Position #: 3 Overlap #: 12 Alignment: --TTTDAAAWHTATTATTTDW TGATTTTAWKATTT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 17 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 17 Motif 16 Reverse Complement Original Motif ATTCATTTTT ACAAWTRATTTTGA TGAMWWHWDWTTTA Direction: Backward Position #: 4 Overlap #: 10 Alignment: -ATTCATTTTT--- ACAAWTRATTTTGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Reverse Complement Reverse Complement TAAAWDWDWWYTCA WHAATTAAARAARAAAAAAA WHAATAAAARAAWAHWMAAA Direction: Forward Position #: 5 Overlap #: 14 Alignment: ----TAAAWDWDWWYTCA-- WHAATTAAARAARAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Original Motif Original Motif WHAATAAAARAAWAHWMAAA AWTAAATAYAATTT WHAATAAAAWWAAATACAAWTT Direction: Forward Position #: 9 Overlap #: 12 Alignment: WHAATAAAARAAWAHWMAAA-- --------AWTAAATAYAATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Original Motif Original Motif WHAATAAAAWWAAATACAAWTT ATMACAATAAAA ATAAYAAWAAAAAATACAAWTT Direction: Forward Position #: 1 Overlap #: 12 Alignment: WHAATAAAAWWAAATACAAWTT ATMACAATAAAA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif AAWTTGTATTTTTTWTTKTTAT KTTTTTTKTTTTTTDAAB AAWTTGTATTTTTTTTTTTTWTTDAAB Direction: Forward Position #: 10 Overlap #: 13 Alignment: AAWTTGTATTTTTTWTTKTTAT----- ---------KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 18 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 18 Motif 6 Reverse Complement Original Motif TTATWAWCTAA AATTYDGAARTAWW WWWTWTWRAMDAAA Direction: Backward Position #: 3 Overlap #: 11 Alignment: -TTATWAWCTAA-- AATTYDGAARTAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Original Motif Original Motif WWWTWTWRAMDAAA ATTTWATGAAA ATTTWWTGAAAAAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: WWWTWTWRAMDAAA ATTTWATGAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Original Motif ATTTWWTGAAAAAA AAATRWTAAAATCA AWWTDWTRAAATMA Direction: Forward Position #: 1 Overlap #: 14 Alignment: ATTTWWTGAAAAAA AAATRWTAAAATCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Original Motif Original Motif AWWTDWTRAAATMA HDAAATAATAHW AWWTDWTAAAWWAWAHW Direction: Forward Position #: 6 Overlap #: 9 Alignment: AWWTDWTRAAATMA--- -----HDAAATAATAHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Original Motif Reverse Complement AWWTDWTAAAWWAWAHW WHAATTAAARAARAAAAAAA WHAATTAAAAWADWAAAAAAWAHW Direction: Forward Position #: 8 Overlap #: 13 Alignment: -------AWWTDWTAAAWWAWAHW WHAATTAAARAARAAAAAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 19 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Motif 9 Original Motif Original Motif TTCWTAGATTAWA AATHATATWTHAAA AWTCWTAKATTAAA Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TTCWTAGATTAWA AATHATATWTHAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Reverse Complement Original Motif TTTAATYTAWGAWT KTTTTTTKTTTTTTDAAB KTTTTTTDWTTTWTKAAT Direction: Forward Position #: 5 Overlap #: 14 Alignment: ----TTTAATYTAWGAWT KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Original Motif Original Motif KTTTTTTDWTTTWTKAAT TTTTTTTKTTKTTTAATTHW TTTTTTTKTTTTTTWAWTYTWTKAAT Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------KTTTTTTDWTTTWTKAAT TTTTTTTKTTKTTTAATTHW------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Reverse Complement Original Motif ATTYAWAMAWTWAAAAAARAAAAAAA AAATRWTAAAATCA ATTYAWAMAWTAAAWRAWAAAAWMAA Direction: Forward Position #: 12 Overlap #: 14 Alignment: ATTYAWAMAWTWAAAAAARAAAAAAA -----------AAATRWTAAAATCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Reverse Complement Original Motif TTYWTTTTWTKWTTTAWTYTWTKAAT AATTYDGAARTAWW TTYWTTTTWTKWWTTHWKAWDTAAWT Direction: Forward Position #: 12 Overlap #: 14 Alignment: TTYWTTTTWTKWTTTAWTYTWTKAAT -----------AATTYDGAARTAWW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 20 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 20 Motif 8 Reverse Complement Original Motif AAATCTTTYAA AAATRWTAAAATCA AAAWAATMWWWTMA Direction: Forward Position #: 4 Overlap #: 11 Alignment: ---AAATCTTTYAA AAATRWTAAAATCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Reverse Complement Original Motif TYAWWWYATTWTTT TTCWTAGATTAWA TTMWTABATTATWT Direction: Forward Position #: 1 Overlap #: 13 Alignment: TYAWWWYATTWTTT TTCWTAGATTAWA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Reverse Complement Original Motif AWATAATBTAWRAA ACAAWTRATTTTGA ACAAWTAATTTWDAAA Direction: Forward Position #: 3 Overlap #: 12 Alignment: --AWATAATBTAWRAA ACAAWTRATTTTGA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Reverse Complement Original Motif TTTHWAAATTAWTTGT AWTAAATAYAATTT WTTAAAWATWATTTGT Direction: Forward Position #: 1 Overlap #: 14 Alignment: TTTHWAAATTAWTTGT AWTAAATAYAATTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Original Motif Original Motif WTTAAAWATWATTTGT AATHATATWTHAAA WTTAAAAATWATWTKTHAAA Direction: Forward Position #: 7 Overlap #: 10 Alignment: WTTAAAWATWATTTGT---- ------AATHATATWTHAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 21 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 21 Motif 15 Original Motif Original Motif ATAAAA ATMACAATAAAA ATMACAATAAAA Direction: Forward Position #: 7 Overlap #: 6 Alignment: ------ATAAAA ATMACAATAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Reverse Complement Original Motif TTTTATTGTYAT ATTTWATGAAA WTTTAWTGWHAT Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTTTATTGTYAT ATTTWATGAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Original Motif WTTTAWTGWHAT AAATRWTAAAATCA AWWTAWTRAAATCA Direction: Forward Position #: 1 Overlap #: 12 Alignment: WTTTAWTGWHAT-- AAATRWTAAAATCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Original Motif Original Motif AWWTAWTRAAATCA AWTAAATAYAATTT AWWTAATDAAATMHAATTT Direction: Forward Position #: 6 Overlap #: 9 Alignment: AWWTAWTRAAATCA----- -----AWTAAATAYAATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 Combined Motif Reverse Complement Reverse Complement AAATTHYATTTDATTAWWT AWTTATGAAA AAATTHYATTTAWKWAAWT Direction: Forward Position #: 8 Overlap #: 10 Alignment: AAATTHYATTTDATTAWWT -------AWTTATGAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 22 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx cccGCCCCGCCCCsb Original Motif Original Motif BBVGCCBVGGCCTV BCCGCCCCGCCCCBB BBBSGCCCCGSCCYB Direction: Backward Position #: 2 Overlap #: 14 Alignment: BBVGCCBVGGCCTV- BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Original Motif BBBSGCCCCGSCCYB DGVBCABTGDWGCGKRRCSR DGVBCHBBSRHSCSGVCCBV Direction: Forward Position #: 6 Overlap #: 15 Alignment: -----BBBSGCCCCGSCCYB DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Original Motif Original Motif DGVBCHBBSRHSCSGVCCBV HVGCCCCGCCCCBB DGVBCHBBVVGCCCSGCCCVBB Direction: Forward Position #: 9 Overlap #: 12 Alignment: DGVBCHBBSRHSCSGVCCBV-- --------HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Original Motif DGVBCHBBVVGCCCSGCCCVBB CHHCHBTCCTSCYTCTGC DGVBCHBBVVBBCCBDCCYSCYTCTGC Direction: Forward Position #: 10 Overlap #: 13 Alignment: DGVBCHBBVVGCCCSGCCCVBB----- ---------CHHCHBTCCTSCYTCTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Reverse Complement DGVBCHBBVVBBCCBDCCYSCYTCTGC VCTSTGKSCMKBCTRCYCTK DGVBCHBBVVBVCHSDSBBCCBHCTGCYCTK Direction: Forward Position #: 12 Overlap #: 16 Alignment: DGVBCHBBVVBBCCBDCCYSCYTCTGC---- -----------VCTSTGKSCMKBCTRCYCTK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 23 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Egr1 TFM1 Original Motif Reverse Complement HGCGTGGGCGK TGTGTGWGTGTGTGTGTG GDGYGTGKGYGTTGTGTG Direction: Backward Position #: 2 Overlap #: 11 Alignment: ------HGCGTGGGCGK- TGTGTGWGTGTGTGTGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Reverse Complement Original Motif CACACAACMCYCACMCDC CAMACACACACAYDCACACA CACACAACACMCACACACAYDCACACA Direction: Forward Position #: 8 Overlap #: 11 Alignment: CACACAACMCYCACMCDC--------- -------CAMACACACACAYDCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Reverse Complement TGTGTGDKTGTGTGTGYGTGTTGTGTG BBGGGGCGGGGCGGB TGTGTGDKTGTGTGTGYGTGTTVTGKGGCGGGGCGGB Direction: Forward Position #: 23 Overlap #: 5 Alignment: TGTGTGDKTGTGTGTGYGTGTTGTGTG---------- ----------------------BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Reverse Complement BCCGCCCCGCCYCAVAACACMCACACACAYDCACACA VAGGCCBBGGCVBB BCCGCCMSGCCYCRSMVCVCMCACACACAYDCACACA Direction: Forward Position #: 6 Overlap #: 14 Alignment: BCCGCCCCGCCYCAVAACACMCACACACAYDCACACA -----VAGGCCBBGGCVBB------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif TGTGTGDKTGTGTGTGYGBGBYSMGKGGCSRGGCGGB DGVBCABTGDWGCGKRRCSR TGTGTGDKTGTGTGTGDGBGBHBHGDGGCGDRGCSGB Direction: Forward Position #: 17 Overlap #: 20 Alignment: TGTGTGDKTGTGTGTGYGBGBYSMGKGGCSRGGCGGB ----------------DGVBCABTGDWGCGKRRCSR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 24 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 Motif 7 Reverse Complement Reverse Complement GGGGGYGGGG MSGGGGCGGGGYSG YSGGGGGGCGGGGM Direction: Backward Position #: 4 Overlap #: 10 Alignment: -GGGGGYGGGG--- MSGGGGCGGGGYSG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Original Motif Reverse Complement YSGGGGGGCGGGGM BBGGGGCGGGGCVD YSGGGGGGSGGSGGGGCVD Direction: Forward Position #: 6 Overlap #: 9 Alignment: YSGGGGGGCGGGGM----- -----BBGGGGCGGGGCVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Reverse Complement YSGGGGGGSGGSGGGGCVD BBGGGGCGGGGCGGB YSGGGGGGSGGGGCGGSGCGGB Direction: Forward Position #: 8 Overlap #: 12 Alignment: YSGGGGGGSGGSGGGGCVD--- -------BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Original Motif BCCGCSCCGCCCCSCCCCCCSK CHHCHBTCCTSCYTCTGC BCCGCSCCGCCCCBBBCCBSCBTCTGC Direction: Forward Position #: 10 Overlap #: 13 Alignment: BCCGCSCCGCCCCSCCCCCCSK----- ---------CHHCHBTCCTSCYTCTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Original Motif GCAGAVGSVGGBBBGGGGCGGSGCGGB BBVGCCBVGGCCTV GCAGAVGSVGGBBVGSBGVGGCSTGGB Direction: Forward Position #: 12 Overlap #: 14 Alignment: GCAGAVGSVGGBBBGGGGCGGSGCGGB -----------BBVGCCBVGGCCTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 25 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFAP2A Zfx Reverse Complement Original Motif SCMVBBGGC BBVGCCBVGGCCTV TVSCCBVGGSCBBV Direction: Backward Position #: 3 Overlap #: 9 Alignment: ---SCMVBBGGC-- BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Original Motif Reverse Complement TVSCCBVGGSCBBV HVCDBBDBCAGCAG HTVVSCBVSRGCDSV Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TVSCCBVGGSCBBV HVCDBBDBCAGCAG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Reverse Complement Original Motif VSDGCMSVBGSVVAD GGGGCCCAAGGGGG GGGGCCSHVGGGGRD Direction: Forward Position #: 1 Overlap #: 14 Alignment: VSDGCMSVBGSVVAD GGGGCCCAAGGGGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Reverse Complement Reverse Complement HMCCCCBHSGGCCCC VCTSTGKSCMKBCTRCYCTK VCTSTGBMCCBHCTVVBCYBC Direction: Forward Position #: 7 Overlap #: 14 Alignment: ------HMCCCCBHSGGCCCC VCTSTGKSCMKBCTRCYCTK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mycn Combined Motif Reverse Complement Reverse Complement GBMGBVVAGDBGGRVCASAGV GCCACGTGSD GBMGCCMMGTGVVRVCASAGV Direction: Forward Position #: 4 Overlap #: 10 Alignment: GBMGBVVAGDBGGRVCASAGV ---GCCACGTGSD-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 26 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF GABPA Reverse Complement Original Motif GCGGACGTTV CCGGAAGTGVV VSCGGAMGTDV Direction: Backward Position #: 2 Overlap #: 10 Alignment: GCGGACGTTV- CCGGAAGTGVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Reverse Complement Original Motif VDACYTCCGSV BCACCTGCABC VVACCTSCRSV Direction: Forward Position #: 1 Overlap #: 11 Alignment: VDACYTCCGSV BCACCTGCABC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Reverse Complement Reverse Complement VSKGSAGGTVV HCAGAATGTHD HCWGVAKGTHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: VSKGSAGGTVV HCAGAATGTHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Original Motif HCWGVAKGTHD SGGTCACGTGACCS BSRKCAYGTGACCS Direction: Forward Position #: 1 Overlap #: 11 Alignment: HCWGVAKGTHD--- SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Original Motif Reverse Complement BSRKCAYGTGACCS HVCDBBDBCAGCAG HVCDBBDKCAGSTGACCS Direction: Forward Position #: 5 Overlap #: 10 Alignment: ----BSRKCAYGTGACCS HVCDBBDBCAGCAG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 27 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Klf4 Motif 7 Reverse Complement Original Motif GCCYCMCCCD CSKCCCCGCCCCSY CSGCCCCVCCCHSY Direction: Forward Position #: 3 Overlap #: 10 Alignment: --GCCYCMCCCD-- CSKCCCCGCCCCSY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Reverse Complement Reverse Complement MSDGGGVGGGGCSG BBGGGGCGGGGCVD MSDGGGVGGGGCGGGGCVD Direction: Forward Position #: 6 Overlap #: 9 Alignment: MSDGGGVGGGGCSG----- -----BBGGGGCGGGGCVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Reverse Complement MSDGGGVGGGGCGGGGCVD BBGGGGCGGGGCGGB MSDGGGVGGGGSGSGGSGCGGB Direction: Forward Position #: 8 Overlap #: 12 Alignment: MSDGGGVGGGGCGGGGCVD--- -------BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Reverse Complement MSDGGGVGGGGSGSGGSGCGGB VAGGCCBBGGCVBB MSDGGGVGGGRGGCSGSGSSVBB Direction: Forward Position #: 10 Overlap #: 13 Alignment: MSDGGGVGGGGSGSGGSGCGGB- ---------VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 Combined Motif Original Motif Reverse Complement MSDGGGVGGGRGGCSGSGSSVBB GGGGGYGGGG MSDGGGVGGGRGGSSGGGGSVBB Direction: Forward Position #: 10 Overlap #: 10 Alignment: MSDGGGVGGGRGGCSGSGSSVBB ---------GGGGGYGGGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 28 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- E2F1 PLAG1 Reverse Complement Original Motif GCGCSAAA GGGGCCCAAGGGGG GGSGCCAAAGGGGG Direction: Forward Position #: 2 Overlap #: 8 Alignment: -GCGCSAAA----- GGGGCCCAAGGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kCAGCCAATmr Combined Motif Reverse Complement Original Motif CCCCCTTTGGCSCC DCAGCCAATVR CCCCCTTTGSMGCCAATVR Direction: Forward Position #: 9 Overlap #: 6 Alignment: CCCCCTTTGGCSCC----- --------DCAGCCAATVR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Original Motif Reverse Complement CCCCCTTTGSMGCCAATVR YCGCCCACGCH CCSCCYWCGCMGCCAATVR Direction: Forward Position #: 1 Overlap #: 11 Alignment: CCCCCTTTGSMGCCAATVR YCGCCCACGCH-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW1 Combined Motif Original Motif Original Motif CCSCCYWCGCMGCCAATVR TTGCGCAA CCSCCYWTKSMGCMAATVR Direction: Forward Position #: 8 Overlap #: 8 Alignment: CCSCCYWCGCMGCCAATVR -------TTGCGCAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 11 Combined Motif Reverse Complement Original Motif MBATTYGCRSRAWKGGSGG ATTTWATGAAA MBATTTDMTGAAAKGGSGG Direction: Forward Position #: 3 Overlap #: 11 Alignment: MBATTYGCRSRAWKGGSGG --ATTTWATGAAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 29 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HIF1AARNT Mycn Original Motif Reverse Complement VBACGTGV GCCACGTGSD GSCACGTGSD Direction: Forward Position #: 2 Overlap #: 8 Alignment: -VBACGTGV- GCCACGTGSD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Original Motif Reverse Complement GSCACGTGSD DCCACGTGCV GCCACGTGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: GSCACGTGSD DCCACGTGCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Reverse Complement Reverse Complement VSCACGTGGC GBTGCAGGTGB GBTGCASGTGBC Direction: Forward Position #: 3 Overlap #: 9 Alignment: --VSCACGTGGC GBTGCAGGTGB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Reverse Complement GBTGCASGTGBC SGGTCACGTGACCS SSKKCACGTGDCCS Direction: Forward Position #: 1 Overlap #: 12 Alignment: GBTGCASGTGBC-- SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF Combined Motif Original Motif Reverse Complement SSKKCACGTGDCCS GCGGACGTTV SGCGSACGTDVCCS Direction: Forward Position #: 2 Overlap #: 10 Alignment: SSKKCACGTGDCCS -GCGGACGTTV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 30 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Zfx Original Motif Reverse Complement GGGGCCCAAGGGGG VAGGCCBBGGCVBB GRGGCCBHVGSGGG Direction: Forward Position #: 1 Overlap #: 14 Alignment: GGGGCCCAAGGGGG VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Original Motif Reverse Complement GRGGCCBHVGSGGG BBGGGGCGGGGCGGB BBGGGGMGGSSCDVGSGGG Direction: Forward Position #: 6 Overlap #: 10 Alignment: -----GRGGCCBHVGSGGG BBGGGGCGGGGCGGB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Reverse Complement BBGGGGMGGSSCDVGSGGG GCAGAKGSAGGABDGHDG BBGGGGMGSVSMKGSVGGVBDGHDG Direction: Forward Position #: 8 Overlap #: 12 Alignment: BBGGGGMGGSSCDVGSGGG------ -------GCAGAKGSAGGABDGHDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif BBGGGGMGSVSMKGSVGGVBDGHDG DGVBCABTGDWGCGKRRCSR BBGGGGMGSVVVDGSVBKGDDGHGKRRCSR Direction: Forward Position #: 11 Overlap #: 15 Alignment: BBGGGGMGSVSMKGSVGGVBDGHDG----- ----------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Original Motif MSGKKYCDCDHCYBBSCHVVBSCRCCCCBB CSKCCCCGCCCCSY MSGKKYCDCDHCKCYCCGCCCCCBCCCCBB Direction: Forward Position #: 11 Overlap #: 14 Alignment: MSGKKYCDCDHCYBBSCHVVBSCRCCCCBB ----------CSKCCCCGCCCCSY------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 31 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 TFM12 Original Motif Original Motif DGVBCABTGDWGCGKRRCSR RAGKGMAGVRRGSRCASAGV VRVKVMHKVRRGSRBAVMGV Direction: Forward Position #: 1 Overlap #: 20 Alignment: DGVBCABTGDWGCGKRRCSR RAGKGMAGVRRGSRCASAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Original Motif VCYVTBMSCKKVYHYVYVKB CHHCHBTCCTSCYTCTGC VCYVTBMSCDHCHBTSCHKCYTCTGC Direction: Forward Position #: 9 Overlap #: 12 Alignment: VCYVTBMSCKKVYHYVYVKB------ --------CHHCHBTCCTSCYTCTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Original Motif VCYVTBMSCDHCHBTSCHKCYTCTGC BCCGCCCCGCCCCBB VCYVTBMSCDHVCBKCCCCGCYCYGH Direction: Forward Position #: 12 Overlap #: 15 Alignment: VCYVTBMSCDHCHBTSCHKCYTCTGC -----------BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Reverse Complement Reverse Complement DCKGKGCGGGGYBGVHDGSRBAVMGV BBGGGGCGGGGCVD BBGGGGBGGGSSGGGYBGVHDGSRBAVMGV Direction: Forward Position #: 5 Overlap #: 10 Alignment: ----DCKGKGCGGGGYBGVHDGSRBAVMGV BBGGGGCGGGGCVD---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Original Motif VCYVTBMSCDHVCBKCCCSSCCCBCCCCBB CSKCCCCGCCCCSY VCYVTBMSCDHVCCBSCCCCSCCCCCCCBB Direction: Forward Position #: 14 Overlap #: 14 Alignment: VCYVTBMSCDHVCBKCCCSSCCCBCCCCBB -------------CSKCCCCGCCCCSY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 32 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ArntAhr Egr1 Original Motif Original Motif YGCGTG HGCGTGGGCGK YGCGTGGGCGK Direction: Forward Position #: 1 Overlap #: 6 Alignment: YGCGTG----- HGCGTGGGCGK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HIF1AARNT Original Motif Original Motif YGCGTGGGCGK VBACGTGV VBRCGTGGGCGK Direction: Forward Position #: 2 Overlap #: 7 Alignment: -YGCGTGGGCGK VBACGTGV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Reverse Complement VBRCGTGGGCGK GCCACGTGSD GSCACGTGSGCGK Direction: Forward Position #: 2 Overlap #: 9 Alignment: -VBRCGTGGGCGK GCCACGTGSD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Original Motif Reverse Complement GSCACGTGSGCGK BBGGGGCGGGGCVD BBGGSGCGKGGSVGK Direction: Forward Position #: 3 Overlap #: 12 Alignment: --GSCACGTGSGCGK BBGGGGCGGGGCVD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Original Motif Original Motif BBGGSGCGKGGSVGK VGCACGTGGH VGCACGBGGCGKGGSVGK Direction: Forward Position #: 4 Overlap #: 7 Alignment: ---BBGGSGCGKGGSVGK VGCACGTGGH-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 33 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mycn Myc Reverse Complement Reverse Complement GCCACGTGSD DCCACGTGCV GCCACGTGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCCACGTGSD DCCACGTGCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Original Motif GCCACGTGSV SGGTCACGTGACCS SGGYCACGTGMVCS Direction: Forward Position #: 3 Overlap #: 10 Alignment: --GCCACGTGSV-- SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GABPA Combined Motif Reverse Complement Original Motif SGVYCACGTGMCCS CCGGAAGTGVV SSCGSAMGTGVCCS Direction: Forward Position #: 2 Overlap #: 11 Alignment: SGVYCACGTGMCCS -CCGGAAGTGVV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Reverse Complement Reverse Complement SGGBCACYTSCGSS GCCYCMCCCD GSSYCMCCYVCGSS Direction: Forward Position #: 1 Overlap #: 10 Alignment: SGGBCACYTSCGSS GCCYCMCCCD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif GSSYCMCCYVCGSS BBVGCCBVGGCCTV GSSYCVCCBSCBSGGCCTV Direction: Forward Position #: 6 Overlap #: 9 Alignment: GSSYCMCCYVCGSS----- -----BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 34 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Mycn Reverse Complement Reverse Complement DCCACGTGCV GCCACGTGSD GCCACGTGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: DCCACGTGCV GCCACGTGSD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Original Motif GCCACGTGSV SGGTCACGTGACCS SGGYCACGTGMVCS Direction: Forward Position #: 3 Overlap #: 10 Alignment: --GCCACGTGSV-- SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GABPA Combined Motif Reverse Complement Original Motif SGVYCACGTGMCCS CCGGAAGTGVV SSCGSAMGTGVCCS Direction: Forward Position #: 2 Overlap #: 11 Alignment: SGVYCACGTGMCCS -CCGGAAGTGVV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Reverse Complement Reverse Complement SGGBCACYTSCGSS GCCYCMCCCD GSSYCMCCYVCGSS Direction: Forward Position #: 1 Overlap #: 10 Alignment: SGGBCACYTSCGSS GCCYCMCCCD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif GSSYCMCCYVCGSS BBVGCCBVGGCCTV GSSYCVCCBSCBSGGCCTV Direction: Forward Position #: 6 Overlap #: 9 Alignment: GSSYCMCCYVCGSS----- -----BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 35 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GABPA TFF11 Reverse Complement Reverse Complement VVCACTTCCGG HVCDBBDBCAGCAG CAGVVCACTTCCRG Direction: Backward Position #: 4 Overlap #: 11 Alignment: VVCACTTCCGG--- HVCDBBDBCAGCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Reverse Complement Reverse Complement CKGGAAGTGVVCTG GCAGAKGSAGGABDGHDG GCAGAKSBRGVABDGHDBTG Direction: Forward Position #: 7 Overlap #: 12 Alignment: ------CKGGAAGTGVVCTG GCAGAKGSAGGABDGHDG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif GCAGAKSBRGVABDGHDBTG DGVBCABTGDWGCGKRRCSR GCAGAKSBRGVDBDVBGVWGCGKRRCSR Direction: Forward Position #: 9 Overlap #: 12 Alignment: GCAGAKSBRGVABDGHDBTG-------- --------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Original Motif MSGKKRCGCWVCVVDBDBCMBSYTCTGC BBVGCCBVGGCCTV MSGKKRCGCWVCVBDGBYBVGGCCYDGC Direction: Forward Position #: 13 Overlap #: 14 Alignment: MSGKKRCGCWVCVVDBDBCMBSYTCTGC ------------BBVGCCBVGGCCTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif GCDMGGCCVBKBCHBVGVWGCGKRYCSR RAGKGMAGVRRGSRCASAGV GCDMGGCCVBKBVVVDGVWGVRKRBMSRSAGV Direction: Forward Position #: 13 Overlap #: 16 Alignment: GCDMGGCCVBKBCHBVGVWGCGKRYCSR---- ------------RAGKGMAGVRRGSRCASAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 36 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc cccGCCCCGCCCCsb Original Motif Original Motif HVGCCCCGCCCCBB BCCGCCCCGCCCCBB CCGCCCCGCCCCBBB Direction: Backward Position #: 1 Overlap #: 14 Alignment: -HVGCCCCGCCCCBB BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Original Motif CCGCCCCGCCCCBBB CSKCCCCGCCCCSY CCGCCCCGCCCCGCCCCSY Direction: Forward Position #: 6 Overlap #: 10 Alignment: CCGCCCCGCCCCBBB---- -----CSKCCCCGCCCCSY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Reverse Complement MSGGGGCGGGGCGGGGCGG MSGKKRCGCWDCABTGBBCD MSGGGVSGGGGCGSKGCVBTGBBCD Direction: Forward Position #: 6 Overlap #: 14 Alignment: MSGGGGCGGGGCGGGGCGG------ -----MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Original Motif HGVBCABBGCYSCGCCCCSVCCCSY BBVGCCBVGGCCTV HGVBCABBGCBSSGCCBCGGCCYSY Direction: Forward Position #: 11 Overlap #: 14 Alignment: HGVBCABBGCYSCGCCCCSVCCCSY ----------BBVGCCBVGGCCTV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Original Motif HGVBCABBGCBSSGCCBCGGCCYSY CHHCHBTCCTSCYTCTGC HGVBCABBGCBBHSCYBCSDCCYBYTGC Direction: Forward Position #: 11 Overlap #: 15 Alignment: HGVBCABBGCBSSGCCBCGGCCYSY--- ----------CHHCHBTCCTSCYTCTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 37 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw wwAAATAATAtw Original Motif Original Motif HDAAATAATAHW HDAAATAATADD HDAAATAATAHW Direction: Forward Position #: 1 Overlap #: 12 Alignment: HDAAATAATAHW HDAAATAATADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 3 Original Motif Original Motif HDAAATAATAHW AWAAAWTWAAASWA AWAAAWHAAAWAWWAHW Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----HDAAATAATAHW AWAAAWTWAAASWA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Original Motif Reverse Complement AWAAAWHAAAWAWWAHW BTTHAAAAAAYAAAAAAR BTTHAAAAAAHAAAAAAWAWWAHW Direction: Forward Position #: 8 Overlap #: 11 Alignment: -------AWAAAWHAAAWAWWAHW BTTHAAAAAAYAAAAAAR------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Original Motif WHTWWTWTTTTTTHTTTTTTDAAB AATHATATWTHAAA WHTWWTWTTTWWTHWTWTTTDAAV Direction: Forward Position #: 11 Overlap #: 14 Alignment: WHTWWTWTTTTTTHTTTTTTDAAB ----------AATHATATWTHAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Original Motif Reverse Complement WHTWWTWTTTWWTHWTWTTTDAAV AAATTKTATTTAWT WHTWWTWTTWAATTKTATTTAAWV Direction: Forward Position #: 10 Overlap #: 14 Alignment: WHTWWTWTTTWWTHWTWTTTDAAV ---------AAATTKTATTTAWT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 38 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb TFM2 Original Motif Original Motif BCCGCCCCGCCCCBB CHHCHBTCCTSCYTCTGC CHHCCGYCCYGCCYCBBC Direction: Forward Position #: 3 Overlap #: 15 Alignment: --BCCGCCCCGCCCCBB- CHHCHBTCCTSCYTCTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Reverse Complement CHHCCGYCCYGCCYCBBC MSGKKRCGCWDCABTGBBCD MSGKKRCGCHHCMBYSCBSCCYCBBC Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------CHHCCGYCCYGCCYCBBC MSGKKRCGCWDCABTGBBCD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Original Motif Original Motif MSGKKRCGCHHCMBYSCBSCCYCBBC HVGCCCCGCCCCBB MSGKKRCGCHHCVGCCCCGCCCCBBC Direction: Forward Position #: 12 Overlap #: 14 Alignment: MSGKKRCGCHHCMBYSCBSCCYCBBC -----------HVGCCCCGCCCCBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 7 Reverse Complement Reverse Complement GBVGGGGCGGGGCVGHHGCGKRYCSR MSGGGGCGGGGYSG MSGGGGCGGGGBSGGGGCVGHHGCGKRYCSR Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----GBVGGGGCGGGGCVGHHGCGKRYCSR MSGGGGCGGGGYSG----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Original Motif MSGKKRCGCHHCVGCCCCSBCCCCGCCCCSY BBVGCCBVGGCCTV MSGKKRCGCHBBVGCCCVGGCCYVGCCCCSY Direction: Forward Position #: 11 Overlap #: 14 Alignment: MSGKKRCGCHHCVGCCCCSBCCCCGCCCCSY ----------BBVGCCBVGGCCTV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 39 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kCAGCCAATmr tkAAATAATAtw Reverse Complement Reverse Complement MBATTGGCTGH WHTATTATTTDH WVTATTRKYTVH Direction: Forward Position #: 2 Overlap #: 11 Alignment: -MBATTGGCTGH WHTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Reverse Complement Reverse Complement HVAKYMAATABW HCAGAATGTHD HCAGAAWRTMDW Direction: Forward Position #: 1 Overlap #: 11 Alignment: HVAKYMAATABW HCAGAATGTHD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Original Motif Reverse Complement HCAGAAWRTMDW DDTATTATTTDH HCAGHATATWATTTDH Direction: Forward Position #: 5 Overlap #: 8 Alignment: HCAGAAWRTMDW---- ----DDTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc Combined Motif Reverse Complement Reverse Complement HDAAATWATATHCTGH GBTGCAGGTGB HDAAATWATATDCTGCAGGTGB Direction: Forward Position #: 12 Overlap #: 5 Alignment: HDAAATWATATHCTGH------ -----------GBTGCAGGTGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Original Motif BCACCTGCAGHATATWATTTDH CHHCHBTCCTSCYTCTGC BCACCTGCABHHHHTTVYTBCHTCTGC Direction: Forward Position #: 10 Overlap #: 13 Alignment: BCACCTGCAGHATATWATTTDH----- ---------CHHCHBTCCTSCYTCTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 40 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc TFM2 Reverse Complement Reverse Complement GBTGCAGGTGB GCAGAKGSAGGABDGHDG GCAGHTGCAGGTBDGHDG Direction: Forward Position #: 4 Overlap #: 11 Alignment: ---GBTGCAGGTGB---- GCAGAKGSAGGABDGHDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wsTACwGTAsw Combined Motif Original Motif Original Motif GCAGHTGCAGGTBDGHDG HVTACWGTABD GCABVTRCAGKABDGHDG Direction: Forward Position #: 4 Overlap #: 11 Alignment: GCAGHTGCAGGTBDGHDG ---HVTACWGTABD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Original Motif GCABVTRCAGKABDGHDG CTGCTGBDBBDGBD GCABVTRCWGYWGVVDBDGBD Direction: Forward Position #: 8 Overlap #: 11 Alignment: GCABVTRCAGKABDGHDG--- -------CTGCTGBDBBDGBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Original Motif Original Motif GCABVTRCWGYWGVVDBDGBD DHACATTCTGH KHACATWCTGHWGVVDBDGBD Direction: Forward Position #: 1 Overlap #: 11 Alignment: GCABVTRCWGYWGVVDBDGBD DHACATTCTGH---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sSGTCACGTGACSs Combined Motif Original Motif Original Motif KHACATWCTGHWGVVDBDGBD SGGTCACGTGACCS KHACATWCTGHWGVVDBGGTCACGTGACCS Direction: Forward Position #: 17 Overlap #: 5 Alignment: KHACATWCTGHWGVVDBDGBD--------- ----------------SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 41 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw tkAAATAATAtw Original Motif Original Motif HDAAATAATADD HDAAATAATAHW HDAAATAATAHW Direction: Forward Position #: 1 Overlap #: 12 Alignment: HDAAATAATADD HDAAATAATAHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 3 Original Motif Original Motif HDAAATAATAHW AWAAAWTWAAASWA AWAAAWHAAAWAWWAHW Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----HDAAATAATAHW AWAAAWTWAAASWA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Original Motif Reverse Complement AWAAAWHAAAWAWWAHW TTTDAWATATHATT AWAAAWTWWAAAATATWATT Direction: Forward Position #: 7 Overlap #: 11 Alignment: AWAAAWHAAAWAWWAHW--- ------TTTDAWATATHATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif AATWATATTTTWWAWTTTWT KTTTTTTKTTTTTTDAAB AATWATATTTTTTWTTTTTTTTDAAB Direction: Forward Position #: 9 Overlap #: 12 Alignment: AATWATATTTTWWAWTTTWT------ --------KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Original Motif Reverse Complement AATWATATTTTTTWTTTTTTTTDAAB AAATTKTATTTAWT AATWATATTTTAAATTKTATTTAAWB Direction: Forward Position #: 12 Overlap #: 14 Alignment: AATWATATTTTTTWTTTTTTTTDAAB -----------AAATTKTATTTAWT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 42 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sSGTCACGTGACSs Pax5 Original Motif Original Motif SGGTCACGTGACCS DGVBCABTGDWGCGKRRCSR DGVBCABBGWHRCGTGACSV Direction: Forward Position #: 7 Overlap #: 14 Alignment: ------SGGTCACGTGACCS DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Reverse Complement Reverse Complement VSGTCACGKDWCBBTGBBCD BBGGGGCGGGGCVD VSGKSRCGGGGCBBTGBBCD Direction: Forward Position #: 1 Overlap #: 14 Alignment: VSGTCACGKDWCBBTGBBCD BBGGGGCGGGGCVD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Original Motif HGVBCABBGCCCCGMSYCSV BCCGCCCCGCCCCBB HGVBCABBGCCSCSCCSCCCCBB Direction: Forward Position #: 9 Overlap #: 12 Alignment: HGVBCABBGCCCCGMSYCSV--- --------BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Original Motif HGVBCABBGCCSCSCCSCCCCBB CSKCCCCGCCCCSY HGVBCABBGCCKCCCCGCCCCSB Direction: Forward Position #: 10 Overlap #: 14 Alignment: HGVBCABBGCCSCSCCSCCCCBB ---------CSKCCCCGCCCCSY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc Combined Motif Reverse Complement Reverse Complement VSGGGGCGGGGYGGCBBTGBBCD GBTGCAGGTGB VSGSKGCRGGKBBGCBBTGBBCD Direction: Forward Position #: 3 Overlap #: 11 Alignment: VSGGGGCGGGGYGGCBBTGBBCD --GBTGCAGGTGB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 43 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wsTACwGTAsw kcACCTGCAgc Original Motif Reverse Complement HVTACWGTABD GBTGCAGGTGB DVTRCAGKWBH Direction: Forward Position #: 1 Overlap #: 11 Alignment: HVTACWGTABD GBTGCAGGTGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Original Motif Reverse Complement DVTRCAGKWBH DDTATTATTTDH DVTAYWRTWDDH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DVTRCAGKWBH- DDTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Original Motif Original Motif DVTAYWRTWDDH HDAAATAATAHW DVTAYWAWWTAATAHW Direction: Forward Position #: 5 Overlap #: 8 Alignment: DVTAYWRTWDDH---- ----HDAAATAATAHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Reverse Complement Original Motif WHTATTAWWTWMTAVD AATTYDGAARTAWW WHTATTAATTHHKAADTAWW Direction: Forward Position #: 7 Overlap #: 10 Alignment: WHTATTAWWTWMTAVD---- ------AATTYDGAARTAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww Combined Motif Reverse Complement Reverse Complement WWTABTTYHHAATTAATAHW DHTATTTACBD WWTABTTYHHWATTWAYAHW Direction: Forward Position #: 9 Overlap #: 11 Alignment: WWTABTTYHHAATTAATAHW --------DHTATTTACBD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 44 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dhACATTCTkh kcACCTGCAgc Original Motif Original Motif DHACATTCTGH BCACCTGCABC DHACMTKCWGH Direction: Backward Position #: 1 Overlap #: 11 Alignment: DHACATTCTGH BCACCTGCABC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Reverse Complement Reverse Complement DCWGYAYGTDH TCAAAATKAWTTGT TCAAAATKADTTGTAYGTDH Direction: Forward Position #: 10 Overlap #: 5 Alignment: ---------DCWGYAYGTDH TCAAAATKAWTTGT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Reverse Complement Original Motif DHACKTACAADTYATTTTGA HDAAATAATADD DHAMDTAMWADTYATTTTGA Direction: Forward Position #: 1 Overlap #: 12 Alignment: DHACKTACAADTYATTTTGA HDAAATAATADD-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Reverse Complement Reverse Complement TCAAAATKADTWRTADRTDD WHTATTATTTDH TCAAAATKWDTADTATKTDD Direction: Forward Position #: 9 Overlap #: 12 Alignment: TCAAAATKADTWRTADRTDD --------WHTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Reverse Complement TCAAAATKWDTADTATKTDD TGTGTGWGTGTGTGTGTG TCAAAATKWDTWDTRTGTDTGTGTGTGTG Direction: Forward Position #: 12 Overlap #: 9 Alignment: TCAAAATKWDTADTATKTDD--------- -----------TGTGTGWGTGTGTGTGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 45 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww tkAAATAATAtw Original Motif Original Motif DBGTAAATAHD HDAAATAATAHW DHRWWAATAHDH Direction: Backward Position #: 1 Overlap #: 11 Alignment: -DBGTAAATAHD HDAAATAATAHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Original Motif Original Motif DHRWWAATAHDH HDAAATAATADD DHRWWAAWATAWTADD Direction: Forward Position #: 5 Overlap #: 8 Alignment: DHRWWAATAHDH---- ----HDAAATAATADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Original Motif DDTAWTATWTTWWKHD AATHATATWTHAAA DDTAWTAWWTWWATWTHAAA Direction: Forward Position #: 7 Overlap #: 10 Alignment: DDTAWTATWTTWWKHD---- ------AATHATATWTHAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Reverse Complement DDTAWTAWWTWWATWTHAAA BTTHAAAAAAYAAAAAAR DDTAWTAWBTTWAWWWAAMAAAAAAR Direction: Forward Position #: 9 Overlap #: 12 Alignment: DDTAWTAWWTWWATWTHAAA------ --------BTTHAAAAAAYAAAAAAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Original Motif Reverse Complement DDTAWTAWBTTWAWWWAAMAAAAAAR WWTAKTTCDKAATT WWTADTTMWKAATTTWAWWWAAMAAAAAAR Direction: Forward Position #: 5 Overlap #: 10 Alignment: ----DDTAWTAWBTTWAWWWAAMAAAAAAR WWTAKTTCDKAATT---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 46 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW3 wsTACwGTAsw Reverse Complement Reverse Complement CAGTGC DBTACWGTAVH DBTACAGTRSH Direction: Forward Position #: 5 Overlap #: 6 Alignment: ----CAGTGC- DBTACWGTAVH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Original Motif DBTACAGTRSH DGVBCABTGDWGCGKRRCSR DVTACAGTRVDGCGKRRCSR Direction: Forward Position #: 1 Overlap #: 11 Alignment: DBTACAGTRSH--------- DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif MSGKKRCGCDBMACTGTAVD RAGKGMAGVRRGSRCASAGV MSGKKRCGCADVRCWGDAVDSRCASAGV Direction: Forward Position #: 9 Overlap #: 12 Alignment: MSGKKRCGCDBMACTGTAVD-------- --------RAGKGMAGVRRGSRCASAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Reverse Complement Reverse Complement VCTSTGKSHVTDCWGKVHTGCGKRYCSR DCCACGTGCV DCYMYGTGCVTDCWGKVHTGCGKRYCSR Direction: Forward Position #: 1 Overlap #: 10 Alignment: VCTSTGKSHVTDCWGKVHTGCGKRYCSR DCCACGTGCV------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif GABPA Original Motif Reverse Complement DCYMYGTGCVTDCWGKVHTGCGKRYCSR VVCACTTCCGG VCCMCKTSCGKDCWGKVHTGCGKRYCSR Direction: Forward Position #: 1 Overlap #: 11 Alignment: DCYMYGTGCVTDCWGKVHTGCGKRYCSR VVCACTTCCGG----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 47 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW1 Motif 6 Reverse Complement Original Motif TTGCGCAA AATTYDGAARTAWW AATTTTGMRMAAWW Direction: Forward Position #: 5 Overlap #: 8 Alignment: ----TTGCGCAA-- AATTYDGAARTAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 10 Original Motif Reverse Complement AATTTTGMRMAAWW AWTTATGAAA AATTWTGAAAAAWW Direction: Forward Position #: 1 Overlap #: 10 Alignment: AATTTTGMRMAAWW AWTTATGAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Reverse Complement Original Motif WWTTTTTCAWAATT KTTTTTTKTTTTTTDAAB WTTTTTTBWTWWTTDAAB Direction: Forward Position #: 1 Overlap #: 14 Alignment: WWTTTTTCAWAATT---- KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Reverse Complement Reverse Complement BTTHAAWWAWBAAAAAAW TTTCATWAAAT TTTCAWWAAATAAAAAAW Direction: Forward Position #: 1 Overlap #: 11 Alignment: BTTHAAWWAWBAAAAAAW TTTCATWAAAT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif TTTCAWWAAATAAAAAAW DGVBCABTGDWGCGKRRCSR TTTCAWWARAKMAVHRAWGCGKRRCSR Direction: Forward Position #: 8 Overlap #: 11 Alignment: TTTCAWWAAATAAAAAAW--------- -------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 48 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW2 wbgTAAATAww Original Motif Reverse Complement YGGACTTACG DHTATTTACBD DHKRWYTWMVV Direction: Forward Position #: 2 Overlap #: 10 Alignment: -YGGACTTACG DHTATTTACBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif GABPA Reverse Complement Original Motif VVYWAKWMRDD CCGGAAGTGVV CCGGAAGTVRDD Direction: Forward Position #: 2 Overlap #: 10 Alignment: -VVYWAKWMRDD CCGGAAGTGVV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF1 Reverse Complement Reverse Complement DHMVACTTCCGG VVTCTTTGTCCT DVHSWYTKBCSK Direction: Forward Position #: 1 Overlap #: 12 Alignment: DHMVACTTCCGG VVTCTTTGTCCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Reverse Complement Original Motif RSGVYAKWSDVD GGGGCCCAAGGGGG GRGGCCADAGGGGG Direction: Forward Position #: 2 Overlap #: 12 Alignment: -RSGVYAKWSDVD- GGGGCCCAAGGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Original Motif Reverse Complement GRGGCCADAGGGGG GCAGAKGSAGGABDGHDG GCAGAKGSRGSHHDVDGGGG Direction: Forward Position #: 7 Overlap #: 12 Alignment: ------GRGGCCADAGGGGG GCAGAKGSAGGABDGHDG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 49 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 TFM12 Original Motif Original Motif AGGACAAAGAVV RAGKGMAGVRRGSRCASAGV RCASAGVAGGDCARARRGVR Direction: Backward Position #: 8 Overlap #: 12 Alignment: -AGGACAAAGAVV------- RAGKGMAGVRRGSRCASAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Reverse Complement RCASAGVAGGDCARARRGVR VAGGCCBBGGCVBB RCASAGVAGGCCHVDGVVVV Direction: Forward Position #: 7 Overlap #: 14 Alignment: RCASAGVAGGDCARARRGVR ------VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Combined Motif Original Motif Original Motif RCASAGVAGGCCHVDGVVVV RGRAGARRGARRAR RCASAGVARGVMDRRGVVVRAR Direction: Forward Position #: 9 Overlap #: 12 Alignment: RCASAGVAGGCCHVDGVVVV-- --------RGRAGARRGARRAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif RCASAGVARGVMDRRGVVVRAR DGVBCABTGDWGCGKRRCSR RCASAGVARGRMDVRVBVVDRVGKRRCSR Direction: Forward Position #: 10 Overlap #: 13 Alignment: RCASAGVARGVMDRRGVVVRAR------- ---------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Original Motif MSGKKRCVMDBVVVKVHYMCMTVCTSTGK CHHCHBTCCTSCYTCTGC MSGKKRCVMDBVVVDVHBHCCTSCYBBDGC Direction: Forward Position #: 13 Overlap #: 17 Alignment: MSGKKRCVMDBVVVKVHYMCMTVCTSTGK- ------------CHHCHBTCCTSCYTCTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 50 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 TFM2 Original Motif Reverse Complement CTGCTGBDBBDGBD GCAGAKGSAGGABDGHDG GCWGMTGSDGBHBDVHDG Direction: Forward Position #: 2 Overlap #: 14 Alignment: -CTGCTGBDBBDGBD--- GCAGAKGSAGGABDGHDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Reverse Complement Reverse Complement CHHVHBHBCDSCARCWGC VCTSTGKSCMKBCTRCYCTK VCTSTGKSCMHBCHDCYHBCARCWGC Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------CHHVHBHBCDSCARCWGC VCTSTGKSCMKBCTRCYCTK------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif GCWGMTGVDKGHHGBHRGSRCASAGV DGVBCABTGDWGCGKRRCSR GCWGMTGVDKGDRVBHDVBGVAGMGDRRCSR Direction: Forward Position #: 12 Overlap #: 15 Alignment: GCWGMTGVDKGHHGBHRGSRCASAGV----- -----------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif GCWGMTGVDKGDRVBHDVBGVAGMGDRRCSR BBVGCCBVGGCCTV GCWGMTGVDKGDRVBVDSYBVRGCSTRRCSR Direction: Forward Position #: 14 Overlap #: 14 Alignment: GCWGMTGVDKGDRVBHDVBGVAGMGDRRCSR -------------BBVGCCBVGGCCTV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Combined Motif Reverse Complement Original Motif MSGKMASGCMVBKSHVBVMDCYHBCARCWGC RGRAGARRGARRAR MSGKMASGCMVBKVVRAVADVVHDVARCWGC Direction: Forward Position #: 14 Overlap #: 14 Alignment: MSGKMASGCMVBKSHVBVMDCYHBCARCWGC -------------RGRAGARRGARRAR---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 51 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 TFM11 Original Motif Original Motif CACACACACACWCACACA CAMACACACACAYDCACACA CACACACACAYDCACACACA Direction: Backward Position #: 1 Overlap #: 18 Alignment: --CACACACACACWCACACA CAMACACACACAYDCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Reverse Complement Original Motif TGTGTGTGDKTGTGTGTGTG KTTTTTTKTTTTTTDAAB KTTKTBTGTKTTTKTRWGTGTG Direction: Forward Position #: 3 Overlap #: 16 Alignment: --TGTGTGTGDKTGTGTGTGTG KTTTTTTKTTTTTTDAAB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Reverse Complement CACACWKAYAAARACAVARAAR WHAATTAAARAARAAAAAAA CACACWKAYAHARWYAAARAARAAAAAAA Direction: Forward Position #: 10 Overlap #: 13 Alignment: CACACWKAYAAARACAVARAAR------- ---------WHAATTAAARAARAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Original Motif CACACWKAYAHARWYAAARAARAAAAAAA AWAAAWTWAAASWA CACACWKAYAHAAWWAAADAAAAAAAAAA Direction: Forward Position #: 13 Overlap #: 14 Alignment: CACACWKAYAHARWYAAARAARAAAAAAA ------------AWAAAWTWAAASWA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif CACACWKAYAHAAWWAAADAAAAAAAAAA RAGKGMAGVRRGSRCASAGV CACACWKAYAHRADDRMAGAARRRAMAVAGV Direction: Forward Position #: 12 Overlap #: 18 Alignment: CACACWKAYAHAAWWAAADAAAAAAAAAA-- -----------RAGKGMAGVRRGSRCASAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 52 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 TFM12 Reverse Complement Original Motif GCAGAKGSAGGABDGHDG RAGKGMAGVRRGSRCASAGV RAGBRSAGGVRGSVBDGAGB Direction: Forward Position #: 3 Overlap #: 18 Alignment: --GCAGAKGSAGGABDGHDG RAGKGMAGVRRGSRCASAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif RAGBRSAGGVRGSVBDGAGB DGVBCABTGDWGCGKRRCSR RAGBRSAGDRDGVABDGADGCGKRRCSR Direction: Forward Position #: 9 Overlap #: 12 Alignment: RAGBRSAGGVRGSVBDGAGB-------- --------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Original Motif MSGKKRCGCHTCDBTVCDMHCTSKBCTK BCCGCCCCGCCCCBB MSGKKRCGCHBCVGCCCCGCCYCBBCTK Direction: Forward Position #: 11 Overlap #: 15 Alignment: MSGKKRCGCHTCDBTVCDMHCTSKBCTK ----------BCCGCCCCGCCCCBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Reverse Complement RAGBBGKGGCGGGGCVGVDGCGKRYCSR HVCDBBDBCAGCAG RAGBBGKGGCGGBBCDGHDGCRGCHSSR Direction: Forward Position #: 13 Overlap #: 14 Alignment: RAGBBGKGGCGGGGCVGVDGCGKRYCSR ------------HVCDBBDBCAGCAG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Reverse Complement RAGBBGKGGCGGBBCDGHDGCRGCHSSR MSGGGGCGGGGYSG RAGBBGKGGMSGGGSCGGGGCRGCHSSR Direction: Forward Position #: 10 Overlap #: 14 Alignment: RAGBBGKGGCGGBBCDGHDGCRGCHSSR ---------MSGGGGCGGGGYSG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 53 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 TFM13 Original Motif Original Motif KTTTTTTKTTTTTTDAAB TTTTTTTKTTKTTTAATTHW TTTTTTTKTTTTTTDAWKHW Direction: Forward Position #: 1 Overlap #: 18 Alignment: KTTTTTTKTTTTTTDAAB-- TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM1 Reverse Complement Original Motif WHRWTDAAAAAARAAAAAAA CACACACACACWCACACA CACACACACAHTBAMAMAARAAAAAAA Direction: Forward Position #: 8 Overlap #: 11 Alignment: -------WHRWTDAAAAAARAAAAAAA CACACACACACWCACACA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Reverse Complement Reverse Complement TTTTTTTKTTYTRTBAHTGTGTGTGTG TGTGTGDKTGTGTGTGTRTG TGTGTGDKTKTKTKTKTBTGTBAHTGTGTGTGTG Direction: Forward Position #: 8 Overlap #: 13 Alignment: -------TTTTTTTKTTYTRTBAHTGTGTGTGTG TGTGTGDKTGTGTGTGTRTG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Reverse Complement TGTGTGDKTKTKTKTKTBTGTBAHTGTGTGTGTG TWSTTTWAWTTTWT TDBKTKWDTTTTTTTKTBTGTBAHTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGTGTGDKTKTKTKTKTBTGTBAHTGTGTGTGTG TWSTTTWAWTTTWT-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Combined Motif Reverse Complement Original Motif CACACACACAHTBACABARAAAAAAADWRARVHA RGRAGARRGARRAR CACACACACAHTBACAVAARARRRARRARARVHA Direction: Forward Position #: 16 Overlap #: 14 Alignment: CACACACACAHTBACABARAAAAAAADWRARVHA ---------------RGRAGARRGARRAR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 54 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 TFM13 Reverse Complement Original Motif TGTGTGDKTGTGTGTGTRTG TTTTTTTKTTKTTTAATTHW TTKTKTKKTTKTKTRWKTVTG Direction: Forward Position #: 2 Overlap #: 19 Alignment: -TGTGTGDKTGTGTGTGTRTG TTTTTTTKTTKTTTAATTHW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Original Motif CABAYWMAYAYAARYARARAA CACACACACACWCACACA CABAYWMAYACAMACAMAVAMACACA Direction: Forward Position #: 9 Overlap #: 13 Alignment: CABAYWMAYAYAARYARARAA----- --------CACACACACACWCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif TGTGTRTBTRTGTRTGTKTRWKTVTG KTTTTTTKTTTTTTDAAB TGTGTRTBTDTKTDTKTKTTTTTDWRB Direction: Forward Position #: 10 Overlap #: 17 Alignment: TGTGTRTBTRTGTRTGTKTRWKTVTG- ---------KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif BKWHAAAAARARADARAHAVAMACACA RAGKGMAGVRRGSRCASAGV BKWHAAAAARARARRRMHRVAVRCACASAGV Direction: Forward Position #: 12 Overlap #: 16 Alignment: BKWHAAAAARARADARAHAVAMACACA---- -----------RAGKGMAGVRRGSRCASAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Reverse Complement VCTSTGTGKBTBMHYMKMTKTKTTTTTDWRB TWSTTTWAWTTTWT VCTSTGTGKBTBMTHVTWTTWTTTTWTDWRB Direction: Forward Position #: 14 Overlap #: 14 Alignment: VCTSTGTGKBTBMHYMKMTKTKTTTTTDWRB -------------TWSTTTWAWTTTWT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 55 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Pax5 Original Motif Original Motif RAGKGMAGVRRGSRCASAGV DGVBCABTGDWGCGKRRCSR VRVKVMHKVRRGSRBAVMGV Direction: Forward Position #: 1 Overlap #: 20 Alignment: RAGKGMAGVRRGSRCASAGV DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Original Motif VCYVTBMSCKKVYHYVYVKB CHHCHBTCCTSCYTCTGC VCYVTBMSCDHCHBTSCHKCYTCTGC Direction: Forward Position #: 9 Overlap #: 12 Alignment: VCYVTBMSCKKVYHYVYVKB------ --------CHHCHBTCCTSCYTCTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Reverse Complement Reverse Complement GCAGAKGYHGSAVDGHDGSRBAVMGV WHAATTAAARAARAAAAAAA AAAAAAADBARTDARAAARVGCAGAKGYHGSAV Direction: Backward Position #: 8 Overlap #: 13 Alignment: GCAGAKGYHGSAVDGHDGSRBAVMGV------- -------------WHAATTAAARAARAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 56 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 TFM11 Reverse Complement Original Motif WHAATTAAARAARAAAAAAA CAMACACACACAYDCACACA AAHAVWYAMAMAMRMAMAMAC Direction: Backward Position #: 2 Overlap #: 19 Alignment: -WHAATTAAARAARAAAAAAA -CAMACACACACAYDCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif GTYTYTYKYTRTYTKWVTDTT KTTTTTTKTTTTTTDAAB GTYTYTYKTTDTTTTWDTTTTTDAAB Direction: Forward Position #: 9 Overlap #: 13 Alignment: GTYTYTYKYTRTYTKWVTDTT----- --------KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif BTTHAAAAADWAAAADAARMAMAMAC RAGKGMAGVRRGSRCASAGV BTTHAAAAADWRARARMAGVAVRVACASAGV Direction: Forward Position #: 12 Overlap #: 15 Alignment: BTTHAAAAADWAAAADAARMAMAMAC----- -----------RAGKGMAGVRRGSRCASAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Original Motif BTTHAAAAADWRARARMAGVAVRVACASAGV CACACACACACWCACACA BTTHAAAAAHAMACAVAMRHACACACASAGV Direction: Forward Position #: 10 Overlap #: 18 Alignment: BTTHAAAAADWRARARMAGVAVRVACASAGV ---------CACACACACACWCACACA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Original Motif BTTHAAAAAHAMACAVAMRHACACACASAGV AWAAAWTWAAASWA BTTHAAAAAHAHAVAHWHAAASWMACASAGV Direction: Forward Position #: 11 Overlap #: 14 Alignment: BTTHAAAAAHAMACAVAMRHACACACASAGV ----------AWAAAWTWAAASWA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 06-24-2023 16:08:01 Runtime: 118.467 seconds MOTIFSIM is written by Ngoc Tam L. Tran