MOTIFSIM - MOTIF SIMilarity Detection Tool

Version 2.2

INPUT

Input Parameters
Number of files: 1
Number of top significant motifs: 1
Number of best matches: 5
Similarity cutoff >= 0.5
Matching motif database: Jaspar Vertebrates
Motif tree: No
Combined similar motifs: No
Output file type: All
Output file format: HTML

Input files and motif counts
File name Count of motifs Dataset number
U20230817-combine.txt 4 1

RESULTS

Top 1 Significant Motifs - Global Matching (Highest to Lowest)

There is no global matching for 1 motif file.


Significant Motifs - Global and Local Matching (Highest to Lowest)

Dataset #: 1 Motif ID: 4 Motif name: Motif 4

Original motif     Consensus sequence: GGAAM Reverse complement motif     Consensus sequence: YTTCC

Best Matches for Significant Motif ID 4 (Highest to Lowest)

Dataset #: 1
Motif ID: 2
Motif name: Motif 2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 5
Similarity score: 0.0169642

Alignment:
GCARRGGSAGS
GGAAM------

Original motif     Consensus sequence: GCARRGGSAGS Reverse complement motif     Consensus sequence: SCTSCCKMTGC

Dataset #: 1
Motif ID: 3
Motif name: Motif 3
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 5
Similarity score: 0.0369046

Alignment:
AAAAAAAAAAAAAT
------GGAAM---

Original motif     Consensus sequence: AAAAAAAAAAAAAT Reverse complement motif     Consensus sequence: ATTTTTTTTTTTTT

Dataset #: 1
Motif ID: 1
Motif name: Motif 1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 5
Similarity score: 0.0565475

Alignment:
KCCASDAGGTGGCK
--GGAAM-------

Original motif     Consensus sequence: YGCCACCTDSTGGY Reverse complement motif     Consensus sequence: KCCASDAGGTGGCK


Best Matches for Each Motif (Highest to Lowest)

Dataset #: 1 Motif ID: 1 Motif name: Motif 1

Original motif     Consensus sequence: YGCCACCTDSTGGY Reverse complement motif     Consensus sequence: KCCASDAGGTGGCK

Best Matches for Motif ID 1 (Highest to Lowest)

Dataset #: 1
Motif ID: 3
Motif name: Motif 3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.111607

Alignment:
AAAAAAAAAAAAAT
KCCASDAGGTGGCK

Original motif     Consensus sequence: AAAAAAAAAAAAAT Reverse complement motif     Consensus sequence: ATTTTTTTTTTTTT

Dataset #: 1
Motif ID: 2
Motif name: Motif 2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 1.55614

Alignment:
---SCTSCCKMTGC
YGCCACCTDSTGGY

Original motif     Consensus sequence: GCARRGGSAGS Reverse complement motif     Consensus sequence: SCTSCCKMTGC

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 5
Similarity score: 4.54821

Alignment:
YTTCC---------
YGCCACCTDSTGGY

Original motif     Consensus sequence: GGAAM Reverse complement motif     Consensus sequence: YTTCC

Dataset #: 1 Motif ID: 2 Motif name: Motif 2

Original motif     Consensus sequence: GCARRGGSAGS Reverse complement motif     Consensus sequence: SCTSCCKMTGC

Best Matches for Motif ID 2 (Highest to Lowest)

Dataset #: 1
Motif ID: 1
Motif name: Motif 1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0377434

Alignment:
KCCASDAGGTGGCK
--GCARRGGSAGS-

Original motif     Consensus sequence: YGCCACCTDSTGGY Reverse complement motif     Consensus sequence: KCCASDAGGTGGCK

Dataset #: 1
Motif ID: 3
Motif name: Motif 3
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0880681

Alignment:
AAAAAAAAAAAAAT
---GCARRGGSAGS

Original motif     Consensus sequence: AAAAAAAAAAAAAT Reverse complement motif     Consensus sequence: ATTTTTTTTTTTTT

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 5
Similarity score: 3.01696

Alignment:
GGAAM------
GCARRGGSAGS

Original motif     Consensus sequence: GGAAM Reverse complement motif     Consensus sequence: YTTCC

Dataset #: 1 Motif ID: 3 Motif name: Motif 3

Original motif     Consensus sequence: AAAAAAAAAAAAAT Reverse complement motif     Consensus sequence: ATTTTTTTTTTTTT

Best Matches for Motif ID 3 (Highest to Lowest)

Dataset #: 1
Motif ID: 1
Motif name: Motif 1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.11942

Alignment:
YGCCACCTDSTGGY
ATTTTTTTTTTTTT

Original motif     Consensus sequence: YGCCACCTDSTGGY Reverse complement motif     Consensus sequence: KCCASDAGGTGGCK

Dataset #: 1
Motif ID: 2
Motif name: Motif 2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 1.58398

Alignment:
---GCARRGGSAGS
AAAAAAAAAAAAAT

Original motif     Consensus sequence: GCARRGGSAGS Reverse complement motif     Consensus sequence: SCTSCCKMTGC

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 5
Similarity score: 4.53281

Alignment:
---------YTTCC
ATTTTTTTTTTTTT

Original motif     Consensus sequence: GGAAM Reverse complement motif     Consensus sequence: YTTCC

Dataset #: 1 Motif ID: 4 Motif name: Motif 4

Original motif     Consensus sequence: GGAAM Reverse complement motif     Consensus sequence: YTTCC

Best Matches for Motif ID 4 (Highest to Lowest)

Dataset #: 1
Motif ID: 2
Motif name: Motif 2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 5
Similarity score: 0.0169642

Alignment:
GCARRGGSAGS
GGAAM------

Original motif     Consensus sequence: GCARRGGSAGS Reverse complement motif     Consensus sequence: SCTSCCKMTGC

Dataset #: 1
Motif ID: 3
Motif name: Motif 3
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 5
Similarity score: 0.0369046

Alignment:
AAAAAAAAAAAAAT
------GGAAM---

Original motif     Consensus sequence: AAAAAAAAAAAAAT Reverse complement motif     Consensus sequence: ATTTTTTTTTTTTT

Dataset #: 1
Motif ID: 1
Motif name: Motif 1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 5
Similarity score: 0.0565475

Alignment:
KCCASDAGGTGGCK
--GGAAM-------

Original motif     Consensus sequence: YGCCACCTDSTGGY Reverse complement motif     Consensus sequence: KCCASDAGGTGGCK

Results created by MOTIFSIM on 08-17-2023 18:12:40
Runtime: 273.216 seconds

MOTIFSIM is written by Ngoc Tam L. Tran
Motif logo generated by weblogo