**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 1 Number of top significant motifs: 5 Number of best matches: 30 Similarity cutoff: >= 0.75 Matching motif database: Jaspar Core Motif tree: No Combined similar motifs: Yes Output file type: All Output file format: Text Input files and motif counts File name Count of motifs Dataset # Abdominal-B.txt 2 1 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** **************************************************************************************************************************************************************************************************** ****************************************************************** Top 5 Significant Motifs - Global Matching (Highest to Lowest) ****************************************************************** There is no global matching for 1 motif file. **************************************************************************************************************************************************************************************************** **************************************************************** Significant Motifs - Global and Local Matching (Highest to Lowest) **************************************************************** Dataset #: 1 Motif ID: 1 Motif name: Abdominal-B_1 Original motif 0.250000 0.250000 0.250000 0.250000 0.000000 0.500000 0.500000 0.000000 0.250000 0.250000 0.250000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 Consensus sequence: NSNTTTATGGCNNN Reverse complement motif 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.250000 0.250000 0.250000 0.000000 0.500000 0.500000 0.000000 0.250000 0.250000 0.250000 0.250000 Consensus sequence: NNNGCCATAAANSN ******************************************************************* Best Matches for Significant Motif ID 1 (Highest to Lowest) ******************************************************************* Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 Abdominal-B_2 Original Motif Original Motif Forward 1 14 0.000000 Original motif 0.250000 0.250000 0.250000 0.250000 0.000000 0.500000 0.500000 0.000000 0.250000 0.250000 0.250000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 Consensus sequence: NSNTTTATGGCNNN Reverse complement motif 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.250000 0.250000 0.250000 0.000000 0.500000 0.500000 0.000000 0.250000 0.250000 0.250000 0.250000 Consensus sequence: NNNGCCATAAANSN Alignment: NSNTTTATGGCNNN NSNTTTATGGCNNN ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 2 Motif name: Abdominal-B_2 Original motif 0.250000 0.250000 0.250000 0.250000 0.000000 0.500000 0.500000 0.000000 0.250000 0.250000 0.250000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 Consensus sequence: NSNTTTATGGCNNN Reverse complement motif 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.250000 0.250000 0.250000 0.000000 0.500000 0.500000 0.000000 0.250000 0.250000 0.250000 0.250000 Consensus sequence: NNNGCCATAAANSN ******************************************************************* Best Matches for Significant Motif ID 2 (Highest to Lowest) ******************************************************************* Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 Abdominal-B_1 Original Motif Original Motif Forward 1 14 0.000000 Original motif 0.250000 0.250000 0.250000 0.250000 0.000000 0.500000 0.500000 0.000000 0.250000 0.250000 0.250000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 Consensus sequence: NSNTTTATGGCNNN Reverse complement motif 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.250000 0.250000 0.250000 0.000000 0.500000 0.500000 0.000000 0.250000 0.250000 0.250000 0.250000 Consensus sequence: NNNGCCATAAANSN Alignment: NSNTTTATGGCNNN NSNTTTATGGCNNN ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- **************************************************************************************************************************************************************************************************** ********************************************************************** Best Matches for Each Motif (Highest to Lowest) ***************************************************************************** Dataset #: 1 Motif ID: 1 Motif name: Abdominal-B_1 Original motif 0.250000 0.250000 0.250000 0.250000 0.000000 0.500000 0.500000 0.000000 0.250000 0.250000 0.250000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 Consensus sequence: NSNTTTATGGCNNN Reserve complement motif 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.250000 0.250000 0.250000 0.000000 0.500000 0.500000 0.000000 0.250000 0.250000 0.250000 0.250000 Consensus sequence: NNNGCCATAAANSN ************************************************************************ Best Matches for Motif ID 1 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 Abdominal-B_2 Original Motif Original Motif Forward 1 14 0.000000 Original motif 0.250000 0.250000 0.250000 0.250000 0.000000 0.500000 0.500000 0.000000 0.250000 0.250000 0.250000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 Consensus sequence: NSNTTTATGGCNNN Reverse complement motif 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.250000 0.250000 0.250000 0.000000 0.500000 0.500000 0.000000 0.250000 0.250000 0.250000 0.250000 Consensus sequence: NNNGCCATAAANSN Alignment: NSNTTTATGGCNNN NSNTTTATGGCNNN ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 2 Motif name: Abdominal-B_2 Original motif 0.250000 0.250000 0.250000 0.250000 0.000000 0.500000 0.500000 0.000000 0.250000 0.250000 0.250000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 Consensus sequence: NSNTTTATGGCNNN Reserve complement motif 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.250000 0.250000 0.250000 0.000000 0.500000 0.500000 0.000000 0.250000 0.250000 0.250000 0.250000 Consensus sequence: NNNGCCATAAANSN ************************************************************************ Best Matches for Motif ID 2 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 Abdominal-B_1 Original Motif Original Motif Forward 1 14 0.000000 Original motif 0.250000 0.250000 0.250000 0.250000 0.000000 0.500000 0.500000 0.000000 0.250000 0.250000 0.250000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 Consensus sequence: NSNTTTATGGCNNN Reverse complement motif 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.250000 0.250000 0.250000 0.000000 0.500000 0.500000 0.000000 0.250000 0.250000 0.250000 0.250000 Consensus sequence: NNNGCCATAAANSN Alignment: NSNTTTATGGCNNN NSNTTTATGGCNNN ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 08-17-2023 18:04:06 Runtime: 5.828177 seconds MOTIFSIM is written by Ngoc Tam L. 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