**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 1 Number of top significant motifs: 5 Number of best matches: 30 Similarity cutoff: >= 0.75 Matching motif database: Jaspar Core Motif tree: No Combined similar motifs: Yes Output file type: All Output file format: Text Input files and motif counts File name Count of motifs Dataset # Abdominal-B.txt 2 1 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 1 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Abdominal-B_1 Abdominal-B_2 Original Motif Original Motif NSNTTTATGGCNNN NSNTTTATGGCNNN NSNTTTATGGCNNN Direction: Forward Position #: 1 Overlap #: 14 Alignment: NSNTTTATGGCNNN NSNTTTATGGCNNN ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 2 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Abdominal-B_2 Abdominal-B_1 Original Motif Original Motif NSNTTTATGGCNNN NSNTTTATGGCNNN NSNTTTATGGCNNN Direction: Forward Position #: 1 Overlap #: 14 Alignment: NSNTTTATGGCNNN NSNTTTATGGCNNN ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 08-17-2023 18:04:06 Runtime: 5.82818 seconds MOTIFSIM is written by Ngoc Tam L. Tran