**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 1 Number of top significant motifs: 5 Number of best matches: 30 Similarity cutoff: >= 0.75 Matching motif database: Jaspar Core Motif tree: No Combined similar motifs: Yes Output file type: All Output file format: Text Input files and motif counts File name Count of motifs Dataset # Abdominal-B.txt 2 1 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ********************************************************************** Best Matches in Database for Each Motif (Highest to Lowest) ***************************************************************** Dataset #: 1 Motif ID: 1 Motif name: Abdominal-B_1 Consensus sequence (original motif): NSNTTTATGGCNNN Consensus sequence (reverse complement motif): NNNGCCATAAANSN ************************************************************************ Best Matches for Motif ID 1 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0896.1 Hmx1 Original Motif Reverse Complement Forward 3 14 0.0295237 Taxon: Vertebrates Consensus sequence (original motif): VVVAGCAATTAADGVDB Consensus sequence (reverse complement motif): VDBCDTTAATTGCTBVB Alignment: VDBCDTTAATTGCTBVB --NSNTTTATGGCNNN- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0343.1 NDT80 Original Motif Reverse Complement Forward 5 14 0.0353186 Taxon: Fungi Consensus sequence (original motif): HHBHHKGMCACAAAAHCSVDV Consensus sequence (reverse complement motif): BDVSGHTTTTGTGRCYDDVHH Alignment: BDVSGHTTTTGTGRCYDDVHH ----NSNTTTATGGCNNN--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0897.1 Hmx2 Original Motif Reverse Complement Forward 3 14 0.0379243 Taxon: Vertebrates Consensus sequence (original motif): VVAAGCAATTAAHVVDT Consensus sequence (reverse complement motif): ADBVHTTAATTGCTTVB Alignment: ADBVHTTAATTGCTTVB --NSNTTTATGGCNNN- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0898.1 Hmx3 Original Motif Reverse Complement Forward 3 14 0.0400327 Taxon: Vertebrates Consensus sequence (original motif): VBVAGCAATTAAHDVAT Consensus sequence (reverse complement motif): ATBHHTTAATTGCTBBB Alignment: ATBHHTTAATTGCTBBB --NSNTTTATGGCNNN- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0586.1 SPL14 Reverse Complement Original Motif Backward 4 14 0.0406114 Taxon: Plants Consensus sequence (original motif): BBBHBTCCGTACRDDDBBG Consensus sequence (reverse complement motif): CBBDHHKGTACGGABDBBV Alignment: BBBHBTCCGTACRDDDBBG --NNNGCCATAAANSN--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0629.1 Rhox11 Reverse Complement Original Motif Backward 2 14 0.044228 Taxon: Vertebrates Consensus sequence (original motif): AVDVCGCTGTWAWDVVW Consensus sequence (reverse complement motif): WVVHWTWACAGCGBHBT Alignment: AVDVCGCTGTWAWDVVW --NNNGCCATAAANSN- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0435.1 YPR015C Original Motif Reverse Complement Forward 6 14 0.0445571 Taxon: Fungi Consensus sequence (original motif): TBDHDACGTAAATCMTDDHH Consensus sequence (reverse complement motif): HDDDARGATTTACGTHHDBA Alignment: HDDDARGATTTACGTHHDBA -----NSNTTTATGGCNNN- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0555.1 SVP Original Motif Reverse Complement Backward 1 14 0.0467061 Taxon: Plants Consensus sequence (original motif): VWWHCCAAAAADGGAAARAH Consensus sequence (reverse complement motif): HTMTTTCCDTTTTTGGHWWB Alignment: VWWHCCAAAAADGGAAARAH ------NSNTTTATGGCNNN ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0413.1 USV1 Original Motif Reverse Complement Forward 4 14 0.050311 Taxon: Fungi Consensus sequence (original motif): DDDTTMCCCCTGAAHHDBDV Consensus sequence (reverse complement motif): VDBDHHTTCAGGGGRAADDD Alignment: VDBDHHTTCAGGGGRAADDD ---NSNTTTATGGCNNN--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0584.1 SEP1 Reverse Complement Original Motif Forward 1 14 0.0538992 Taxon: Plants Consensus sequence (original motif): HDTDCCAWAWWTRGHAAB Consensus sequence (reverse complement motif): VTTHCKAWWTWTGGDADD Alignment: VTTHCKAWWTWTGGDADD NNNGCCATAAANSN---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0853.1 Alx4 Reverse Complement Reverse Complement Backward 2 14 0.0566741 Taxon: Vertebrates Consensus sequence (original motif): CGHDYTAATTARBHHBB Consensus sequence (reverse complement motif): BBHHVKTAATTAMDDCG Alignment: BBHHVKTAATTAMDDCG --NNNGCCATAAANSN- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0350.1 TOD6 Reverse Complement Reverse Complement Forward 3 14 0.0567756 Taxon: Fungi Consensus sequence (original motif): DBBHDHASCTCATCGCVHHHD Consensus sequence (reverse complement motif): DHHHVGCGATGAGSTDDDBBD Alignment: DHHHVGCGATGAGSTDDDBBD --NNNGCCATAAANSN----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0351.1 DOT6 Reverse Complement Reverse Complement Backward 6 14 0.0581335 Taxon: Fungi Consensus sequence (original motif): DBBBDBWSCTCATCGCVHBBD Consensus sequence (reverse complement motif): DBBHBGCGATGAGSWBHVBVD Alignment: DBBHBGCGATGAGSWBHVBVD --NNNGCCATAAANSN----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0558.1 FLC Reverse Complement Original Motif Forward 2 14 0.0593614 Taxon: Plants Consensus sequence (original motif): DDWWDCCVAAAATRGAAAGWH Consensus sequence (reverse complement motif): HWCTTTCKATTTTBGGDWWBD Alignment: DDWWDCCVAAAATRGAAAGWH -NNNGCCATAAANSN------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0001.2 AGL3 Original Motif Reverse Complement Backward 1 14 0.0601603 Taxon: Plants Consensus sequence (original motif): VDTHCCAWWWATAGDWHB Consensus sequence (reverse complement motif): BHWDCTATWWWTGGHADV Alignment: BHWDCTATWWWTGGHADV ----NSNTTTATGGCNNN ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0752.1 ZNF410 Original Motif Reverse Complement Backward 3 14 0.0607376 Taxon: Vertebrates Consensus sequence (original motif): BMCATCCCATAATAHTC Consensus sequence (reverse complement motif): GADTATTATGGGATGRV Alignment: GADTATTATGGGATGRV -NSNTTTATGGCNNN-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0912.1 Hoxd3 Reverse Complement Original Motif Forward 3 14 0.0617943 Taxon: Vertebrates Consensus sequence (original motif): YTGDDBTAATTAVHBB Consensus sequence (reverse complement motif): VBDBTAATTAVHDCAM Alignment: YTGDDBTAATTAVHBB --NNNGCCATAAANSN ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0415.1 YAP1 Original Motif Reverse Complement Backward 5 14 0.0619166 Taxon: Fungi Consensus sequence (original motif): HBDDDMTTACGTAAKVHHVH Consensus sequence (reverse complement motif): HVDHVYTTACGTAARHDDVH Alignment: HVDHVYTTACGTAARHDDVH --NSNTTTATGGCNNN---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0531.1 CTCF Reverse Complement Reverse Complement Backward 2 14 0.0630445 Taxon: Insects Consensus sequence (original motif): BCVMYAGRTGGCGCY Consensus sequence (reverse complement motif): KGCGCCAKCTMRVGB Alignment: KGCGCCAKCTMRVGB NNNGCCATAAANSN- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0874.1 Arx Reverse Complement Reverse Complement Forward 2 14 0.0632104 Taxon: Vertebrates Consensus sequence (original motif): VTBCRYTAATTARTDBW Consensus sequence (reverse complement motif): WBHAKTAATTAMKGBAV Alignment: WBHAKTAATTAMKGBAV -NNNGCCATAAANSN-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0060.2 NFYA Original Motif Original Motif Backward 1 14 0.0632843 Taxon: Vertebrates Consensus sequence (original motif): AGVSYKCTGATTGGTBVR Consensus sequence (reverse complement motif): KVBACCAATCAGYMSBCT Alignment: AGVSYKCTGATTGGTBVR ----NSNTTTATGGCNNN ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0577.1 SPL3 Reverse Complement Original Motif Forward 1 14 0.063353 Taxon: Plants Consensus sequence (original motif): DDWDMCGTACDWHHWH Consensus sequence (reverse complement motif): DWHHWDGTACGRHWDD Alignment: DDWDMCGTACDWHHWH NNNGCCATAAANSN-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0851.1 Foxj3 Original Motif Reverse Complement Forward 2 14 0.0636812 Taxon: Vertebrates Consensus sequence (original motif): HDHADGTAAACAAAVVH Consensus sequence (reverse complement motif): DBVTTTGTTTACDTHDH Alignment: DBVTTTGTTTACDTHDH -NSNTTTATGGCNNN-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0395.1 STP2 Reverse Complement Original Motif Forward 6 14 0.0638589 Taxon: Fungi Consensus sequence (original motif): HVVHBGGCGCCGYRYVHHBH Consensus sequence (reverse complement motif): HBDHVKKKCGGCGCCBHBVH Alignment: HVVHBGGCGCCGYRYVHHBH -----NNNGCCATAAANSN- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0505.1 Nr5a2 Reverse Complement Reverse Complement Forward 1 14 0.0645003 Taxon: Vertebrates Consensus sequence (original motif): RAGBTCAAGGYCABB Consensus sequence (reverse complement motif): BBTGMCCTTGAVCTK Alignment: BBTGMCCTTGAVCTK NNNGCCATAAANSN- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0585.1 AGL1 Reverse Complement Original Motif Backward 5 14 0.0645812 Taxon: Plants Consensus sequence (original motif): DTTDCCWWAWHDGGWAAV Consensus sequence (reverse complement motif): VTTWCCHHWTWWGGHAAD Alignment: DTTDCCWWAWHDGGWAAV NNNGCCATAAANSN---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0386.1 SPT15 Reverse Complement Original Motif Forward 3 14 0.0646426 Taxon: Fungi Consensus sequence (original motif): VHHHAGDWATATATATDSVHD Consensus sequence (reverse complement motif): DHVSDATATATATWDCTHDHV Alignment: VHHHAGDWATATATATDSVHD --NNNGCCATAAANSN----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0390.1 STB3 Original Motif Original Motif Forward 6 14 0.0646495 Taxon: Fungi Consensus sequence (original motif): GBYHAAAWTTTTTCACTBHDD Consensus sequence (reverse complement motif): HHHBAGTGAAAAAWTTTDKVC Alignment: GBYHAAAWTTTTTCACTBHDD -----NSNTTTATGGCNNN-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0854.1 Alx1 Reverse Complement Reverse Complement Forward 3 14 0.0655573 Taxon: Vertebrates Consensus sequence (original motif): HGHDYTAATTARTHHHH Consensus sequence (reverse complement motif): DDHDAKTAATTAMDHCD Alignment: DDHDAKTAATTAMDHCD --NNNGCCATAAANSN- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0883.1 Dmbx1 Original Motif Reverse Complement Forward 2 14 0.0662546 Taxon: Vertebrates Consensus sequence (original motif): HDRWHMGGATTADKBHD Consensus sequence (reverse complement motif): DHBRDTAATCCRDWKHH Alignment: DHBRDTAATCCRDWKHH -NSNTTTATGGCNNN-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 2 Motif name: Abdominal-B_2 Consensus sequence (original motif): NSNTTTATGGCNNN Consensus sequence (reverse complement motif): NNNGCCATAAANSN ************************************************************************ Best Matches for Motif ID 2 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0896.1 Hmx1 Original Motif Reverse Complement Forward 3 14 0.0295237 Taxon: Vertebrates Consensus sequence (original motif): VVVAGCAATTAADGVDB Consensus sequence (reverse complement motif): VDBCDTTAATTGCTBVB Alignment: VDBCDTTAATTGCTBVB --NSNTTTATGGCNNN- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0343.1 NDT80 Original Motif Reverse Complement Forward 5 14 0.0353186 Taxon: Fungi Consensus sequence (original motif): HHBHHKGMCACAAAAHCSVDV Consensus sequence (reverse complement motif): BDVSGHTTTTGTGRCYDDVHH Alignment: BDVSGHTTTTGTGRCYDDVHH ----NSNTTTATGGCNNN--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0897.1 Hmx2 Original Motif Reverse Complement Forward 3 14 0.0379243 Taxon: Vertebrates Consensus sequence (original motif): VVAAGCAATTAAHVVDT Consensus sequence (reverse complement motif): ADBVHTTAATTGCTTVB Alignment: ADBVHTTAATTGCTTVB --NSNTTTATGGCNNN- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0898.1 Hmx3 Original Motif Reverse Complement Forward 3 14 0.0400327 Taxon: Vertebrates Consensus sequence (original motif): VBVAGCAATTAAHDVAT Consensus sequence (reverse complement motif): ATBHHTTAATTGCTBBB Alignment: ATBHHTTAATTGCTBBB --NSNTTTATGGCNNN- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0586.1 SPL14 Reverse Complement Original Motif Backward 4 14 0.0406114 Taxon: Plants Consensus sequence (original motif): BBBHBTCCGTACRDDDBBG Consensus sequence (reverse complement motif): CBBDHHKGTACGGABDBBV Alignment: BBBHBTCCGTACRDDDBBG --NNNGCCATAAANSN--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0629.1 Rhox11 Reverse Complement Original Motif Backward 2 14 0.044228 Taxon: Vertebrates Consensus sequence (original motif): AVDVCGCTGTWAWDVVW Consensus sequence (reverse complement motif): WVVHWTWACAGCGBHBT Alignment: AVDVCGCTGTWAWDVVW --NNNGCCATAAANSN- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0435.1 YPR015C Original Motif Reverse Complement Forward 6 14 0.0445571 Taxon: Fungi Consensus sequence (original motif): TBDHDACGTAAATCMTDDHH Consensus sequence (reverse complement motif): HDDDARGATTTACGTHHDBA Alignment: HDDDARGATTTACGTHHDBA -----NSNTTTATGGCNNN- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0555.1 SVP Original Motif Reverse Complement Backward 1 14 0.0467061 Taxon: Plants Consensus sequence (original motif): VWWHCCAAAAADGGAAARAH Consensus sequence (reverse complement motif): HTMTTTCCDTTTTTGGHWWB Alignment: VWWHCCAAAAADGGAAARAH ------NSNTTTATGGCNNN ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0413.1 USV1 Original Motif Reverse Complement Forward 4 14 0.050311 Taxon: Fungi Consensus sequence (original motif): DDDTTMCCCCTGAAHHDBDV Consensus sequence (reverse complement motif): VDBDHHTTCAGGGGRAADDD Alignment: VDBDHHTTCAGGGGRAADDD ---NSNTTTATGGCNNN--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0584.1 SEP1 Reverse Complement Original Motif Forward 1 14 0.0538992 Taxon: Plants Consensus sequence (original motif): HDTDCCAWAWWTRGHAAB Consensus sequence (reverse complement motif): VTTHCKAWWTWTGGDADD Alignment: VTTHCKAWWTWTGGDADD NNNGCCATAAANSN---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0853.1 Alx4 Reverse Complement Reverse Complement Backward 2 14 0.0566741 Taxon: Vertebrates Consensus sequence (original motif): CGHDYTAATTARBHHBB Consensus sequence (reverse complement motif): BBHHVKTAATTAMDDCG Alignment: BBHHVKTAATTAMDDCG --NNNGCCATAAANSN- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0350.1 TOD6 Reverse Complement Reverse Complement Forward 3 14 0.0567756 Taxon: Fungi Consensus sequence (original motif): DBBHDHASCTCATCGCVHHHD Consensus sequence (reverse complement motif): DHHHVGCGATGAGSTDDDBBD Alignment: DHHHVGCGATGAGSTDDDBBD --NNNGCCATAAANSN----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0351.1 DOT6 Reverse Complement Reverse Complement Backward 6 14 0.0581335 Taxon: Fungi Consensus sequence (original motif): DBBBDBWSCTCATCGCVHBBD Consensus sequence (reverse complement motif): DBBHBGCGATGAGSWBHVBVD Alignment: DBBHBGCGATGAGSWBHVBVD --NNNGCCATAAANSN----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0558.1 FLC Reverse Complement Original Motif Forward 2 14 0.0593614 Taxon: Plants Consensus sequence (original motif): DDWWDCCVAAAATRGAAAGWH Consensus sequence (reverse complement motif): HWCTTTCKATTTTBGGDWWBD Alignment: DDWWDCCVAAAATRGAAAGWH -NNNGCCATAAANSN------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0001.2 AGL3 Original Motif Reverse Complement Backward 1 14 0.0601603 Taxon: Plants Consensus sequence (original motif): VDTHCCAWWWATAGDWHB Consensus sequence (reverse complement motif): BHWDCTATWWWTGGHADV Alignment: VDTHCCAWWWATAGDWHB ----NSNTTTATGGCNNN ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0752.1 ZNF410 Original Motif Reverse Complement Backward 3 14 0.0607376 Taxon: Vertebrates Consensus sequence (original motif): BMCATCCCATAATAHTC Consensus sequence (reverse complement motif): GADTATTATGGGATGRV Alignment: GADTATTATGGGATGRV -NSNTTTATGGCNNN-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0912.1 Hoxd3 Reverse Complement Original Motif Forward 3 14 0.0617943 Taxon: Vertebrates Consensus sequence (original motif): YTGDDBTAATTAVHBB Consensus sequence (reverse complement motif): VBDBTAATTAVHDCAM Alignment: YTGDDBTAATTAVHBB --NNNGCCATAAANSN ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0415.1 YAP1 Original Motif Reverse Complement Backward 5 14 0.0619166 Taxon: Fungi Consensus sequence (original motif): HBDDDMTTACGTAAKVHHVH Consensus sequence (reverse complement motif): HVDHVYTTACGTAARHDDVH Alignment: HVDHVYTTACGTAARHDDVH --NSNTTTATGGCNNN---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0531.1 CTCF Reverse Complement Reverse Complement Backward 2 14 0.0630445 Taxon: Insects Consensus sequence (original motif): BCVMYAGRTGGCGCY Consensus sequence (reverse complement motif): KGCGCCAKCTMRVGB Alignment: KGCGCCAKCTMRVGB NNNGCCATAAANSN- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0874.1 Arx Reverse Complement Reverse Complement Backward 3 14 0.0632104 Taxon: Vertebrates Consensus sequence (original motif): VTBCRYTAATTARTDBW Consensus sequence (reverse complement motif): WBHAKTAATTAMKGBAV Alignment: WBHAKTAATTAMKGBAV -NNNGCCATAAANSN-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0060.2 NFYA Original Motif Original Motif Backward 1 14 0.0632843 Taxon: Vertebrates Consensus sequence (original motif): AGVSYKCTGATTGGTBVR Consensus sequence (reverse complement motif): KVBACCAATCAGYMSBCT Alignment: AGVSYKCTGATTGGTBVR ----NSNTTTATGGCNNN ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0577.1 SPL3 Original Motif Reverse Complement Backward 1 14 0.063353 Taxon: Plants Consensus sequence (original motif): DDWDMCGTACDWHHWH Consensus sequence (reverse complement motif): DWHHWDGTACGRHWDD Alignment: DDWDMCGTACDWHHWH --NSNTTTATGGCNNN ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0851.1 Foxj3 Original Motif Reverse Complement Forward 2 14 0.0636812 Taxon: Vertebrates Consensus sequence (original motif): HDHADGTAAACAAAVVH Consensus sequence (reverse complement motif): DBVTTTGTTTACDTHDH Alignment: DBVTTTGTTTACDTHDH -NSNTTTATGGCNNN-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0395.1 STP2 Reverse Complement Original Motif Forward 6 14 0.0638589 Taxon: Fungi Consensus sequence (original motif): HVVHBGGCGCCGYRYVHHBH Consensus sequence (reverse complement motif): HBDHVKKKCGGCGCCBHBVH Alignment: HVVHBGGCGCCGYRYVHHBH -----NNNGCCATAAANSN- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0505.1 Nr5a2 Reverse Complement Reverse Complement Forward 1 14 0.0645003 Taxon: Vertebrates Consensus sequence (original motif): RAGBTCAAGGYCABB Consensus sequence (reverse complement motif): BBTGMCCTTGAVCTK Alignment: BBTGMCCTTGAVCTK NNNGCCATAAANSN- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0585.1 AGL1 Reverse Complement Original Motif Forward 1 14 0.0645812 Taxon: Plants Consensus sequence (original motif): DTTDCCWWAWHDGGWAAV Consensus sequence (reverse complement motif): VTTWCCHHWTWWGGHAAD Alignment: VTTWCCHHWTWWGGHAAD NNNGCCATAAANSN---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0386.1 SPT15 Reverse Complement Original Motif Forward 3 14 0.0646426 Taxon: Fungi Consensus sequence (original motif): VHHHAGDWATATATATDSVHD Consensus sequence (reverse complement motif): DHVSDATATATATWDCTHDHV Alignment: VHHHAGDWATATATATDSVHD --NNNGCCATAAANSN----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0390.1 STB3 Original Motif Original Motif Forward 6 14 0.0646495 Taxon: Fungi Consensus sequence (original motif): GBYHAAAWTTTTTCACTBHDD Consensus sequence (reverse complement motif): HHHBAGTGAAAAAWTTTDKVC Alignment: GBYHAAAWTTTTTCACTBHDD -----NSNTTTATGGCNNN-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0854.1 Alx1 Reverse Complement Reverse Complement Forward 3 14 0.0655573 Taxon: Vertebrates Consensus sequence (original motif): HGHDYTAATTARTHHHH Consensus sequence (reverse complement motif): DDHDAKTAATTAMDHCD Alignment: DDHDAKTAATTAMDHCD --NNNGCCATAAANSN- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0883.1 Dmbx1 Original Motif Reverse Complement Forward 2 14 0.0662546 Taxon: Vertebrates Consensus sequence (original motif): HDRWHMGGATTADKBHD Consensus sequence (reverse complement motif): DHBRDTAATCCRDWKHH Alignment: DHBRDTAATCCRDWKHH -NSNTTTATGGCNNN-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 08-17-2023 18:04:06 Runtime: 5.82818 seconds MOTIFSIM is written by Ngoc Tam L. 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