**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 1 Number of top significant motifs: 5 Number of best matches: 30 Similarity cutoff: >= 0.75 Matching motif database: Jaspar Core Motif tree: No Combined similar motifs: Yes Output file type: All Output file format: Text Input files and motif counts File name Count of motifs Dataset # Abdominal-B.txt 2 1 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** **************************************************************************************************************************************************************************************************** ****************************************************************** Top 5 Significant Motifs - Global Matching (Highest to Lowest) ****************************************************************** There is no global matching for 1 motif file. **************************************************************************************************************************************************************************************************** **************************************************************** Significant Motifs - Global and Local Matching (Highest to Lowest) **************************************************************** Dataset #: 1 Motif ID: 1 Motif name: Abdominal-B_1 Consensus sequence (original motif): NSNTTTATGGCNNN Consensus sequence (reverse complement motif): NNNGCCATAAANSN ************************************************************** Best Matches for Significant Motif ID 1 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 Abdominal-B_2 Original Motif Original Motif Forward 1 14 0 Consensus sequence (original motif): NSNTTTATGGCNNN Consensus sequence (reverse complement motif): NNNGCCATAAANSN Alignment: NSNTTTATGGCNNN NSNTTTATGGCNNN ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 2 Motif name: Abdominal-B_2 Consensus sequence (original motif): NSNTTTATGGCNNN Consensus sequence (reverse complement motif): NNNGCCATAAANSN ************************************************************** Best Matches for Significant Motif ID 2 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 Abdominal-B_1 Original Motif Original Motif Forward 1 14 0 Consensus sequence (original motif): NSNTTTATGGCNNN Consensus sequence (reverse complement motif): NNNGCCATAAANSN Alignment: NSNTTTATGGCNNN NSNTTTATGGCNNN ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- **************************************************************************************************************************************************************************************************** ********************************************************************** Best Matches for Each Motif (Highest to Lowest) ***************************************************************************** Dataset #: 1 Motif ID: 1 Motif name: Abdominal-B_1 Consensus sequence (original motif): NSNTTTATGGCNNN Consensus sequence (reverse complement motif): NNNGCCATAAANSN ************************************************************************ Best Matches for Motif ID 1 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 Abdominal-B_2 Original Motif Original Motif Forward 1 14 0 Consensus sequence (original motif): NSNTTTATGGCNNN Consensus sequence (reverse complement motif): NNNGCCATAAANSN Alignment: NSNTTTATGGCNNN NSNTTTATGGCNNN ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 2 Motif name: Abdominal-B_2 Consensus sequence (original motif): NSNTTTATGGCNNN Consensus sequence (reverse complement motif): NNNGCCATAAANSN ************************************************************************ Best Matches for Motif ID 2 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 Abdominal-B_1 Original Motif Original Motif Forward 1 14 0 Consensus sequence (original motif): NSNTTTATGGCNNN Consensus sequence (reverse complement motif): NNNGCCATAAANSN Alignment: NSNTTTATGGCNNN NSNTTTATGGCNNN ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 08-17-2023 18:04:06 Runtime: 5.82818 seconds MOTIFSIM is written by Ngoc Tam L. 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