**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 5 Number of top significant motifs: 5 Number of best matches: 5 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Motif tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # DREME_DM230.txt 1 1 MEME_DM230.txt 20 2 PScanChIP_DM230.txt 14 3 RSAT_peak-motifs_DM230.txt 10 4 W-ChIPMotifs_DM230.txt 11 5 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ****************************************************************** Top 5 Significant Motifs - Global Matching (Highest to Lowest) ****************************************************************** Dataset #: 3 Motif ID: 24 Motif name: SP1 Consensus sequence (original motif): CCCCKCCCCC Consensus sequence (reverse complement motif): GGGGGYGGGG *************************************************************** Best Matches for Top Significant Motif ID 24 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 7 Motif 7 Original Motif Original Motif Backward 2 10 0.00451594 Consensus sequence (original motif): CSKCCCCGCCCCSY Consensus sequence (reverse complement motif): MSGGGGCGGGGYSG Alignment: CSKCCCCGCCCCSY ---CCCCKCCCCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 36 csGCCCCGCCCCsc Original Motif Original Motif Forward 4 10 0.00965796 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: HVGCCCCGCCCCBB ---CCCCKCCCCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 38 cccGCCCCGCCCCsb Original Motif Original Motif Forward 5 10 0.0127292 Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB Alignment: BCCGCCCCGCCCCBB ----CCCCKCCCCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 50 TFF11 Reverse Complement Original Motif Forward 4 10 0.0174405 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GGMGGRGGCGGVGC ---GGGGGYGGGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 54 TFM12 Original Motif Original Motif Forward 7 10 0.0301548 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: CYYCBBCYYYTCCHCCTYYY ------CCCCKCCCCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 45 Motif name: wbgTAAATAww Consensus sequence (original motif): DBGTAAATAHD Consensus sequence (reverse complement motif): DHTATTTACBD *************************************************************** Best Matches for Top Significant Motif ID 45 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 56 TFM11 Reverse Complement Reverse Complement Forward 15 11 0.0192768 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: TWVHWWWYTTTYTTTTTHTTTVWBH --------------DHTATTTACBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 9 Motif 9 Reverse Complement Original Motif Backward 4 11 0.0250541 Consensus sequence (original motif): AATHATATWTHAAA Consensus sequence (reverse complement motif): TTTDAWATATHATT Alignment: AATHATATWTHAAA DHTATTTACBD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 6 Motif 6 Original Motif Original Motif Backward 1 11 0.027895 Consensus sequence (original motif): AATTYDGAARTAWW Consensus sequence (reverse complement motif): WWTAKTTCDKAATT Alignment: AATTYDGAARTAWW ---DBGTAAATAHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 52 TFM1 Original Motif Reverse Complement Forward 1 11 0.0283217 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW Alignment: ABAAAAAAWHAAAAARAW DBGTAAATAHD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 53 TFM3 Original Motif Reverse Complement Backward 2 11 0.0308097 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW Alignment: TWAAWTTVTGAAAAAHWW ------DBGTAAATAHD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 27 Motif name: Klf4 Consensus sequence (original motif): DGGGYGKGGC Consensus sequence (reverse complement motif): GCCYCMCCCD *************************************************************** Best Matches for Top Significant Motif ID 27 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 7 Motif 7 Reverse Complement Original Motif Forward 3 10 0.0152457 Consensus sequence (original motif): CSKCCCCGCCCCSY Consensus sequence (reverse complement motif): MSGGGGCGGGGYSG Alignment: CSKCCCCGCCCCSY --GCCYCMCCCD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 36 csGCCCCGCCCCsc Original Motif Reverse Complement Backward 3 10 0.0160185 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: BBGGGGCGGGGCVD --DGGGYGKGGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 38 cccGCCCCGCCCCsb Original Motif Reverse Complement Forward 3 10 0.0194893 Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB Alignment: BBGGGGCGGGGCGGB --DGGGYGKGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 50 TFF11 Original Motif Original Motif Forward 5 10 0.0402906 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GGMGGRGGCGGVGC ----DGGGYGKGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 54 TFM12 Reverse Complement Original Motif Backward 7 10 0.0556427 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: CYYCBBCYYYTCCHCCTYYY ----GCCYCMCCCD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 44 Motif name: dhACATTCTkh Consensus sequence (original motif): DHACATTCTGH Consensus sequence (reverse complement motif): HCAGAATGTHD *************************************************************** Best Matches for Top Significant Motif ID 44 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 53 TFM3 Original Motif Reverse Complement Backward 8 11 0.0217516 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW Alignment: TWAAWTTVTGAAAAAHWW DHACATTCTGH------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 16 Motif 16 Reverse Complement Reverse Complement Backward 4 11 0.0258838 Consensus sequence (original motif): ACAAWTRATTTTGA Consensus sequence (reverse complement motif): TCAAAATKAWTTGT Alignment: TCAAAATKAWTTGT HCAGAATGTHD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 56 TFM11 Original Motif Reverse Complement Backward 11 11 0.0307858 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: TWVHWWWYTTTYTTTTTHTTTVWBH ----DHACATTCTGH---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 55 TFM13 Original Motif Original Motif Backward 9 11 0.0357323 Consensus sequence (original motif): ATKAAWTTTTRMAABAHHTW Consensus sequence (reverse complement motif): WAHHTVTTYKAAAAWTTRAT Alignment: ATKAAWTTTTRMAABAHHTW -DHACATTCTGH-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 6 Motif 6 Reverse Complement Original Motif Backward 4 11 0.0400884 Consensus sequence (original motif): AATTYDGAARTAWW Consensus sequence (reverse complement motif): WWTAKTTCDKAATT Alignment: AATTYDGAARTAWW HCAGAATGTHD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 1 Motif name: Motif 1 Consensus sequence (original motif): GGCGGGGC Consensus sequence (reverse complement motif): GCCCCGCC *************************************************************** Best Matches for Top Significant Motif ID 1 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 36 csGCCCCGCCCCsc Original Motif Reverse Complement Backward 3 8 0 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: BBGGGGCGGGGCVD ----GGCGGGGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 38 cccGCCCCGCCCCsb Original Motif Reverse Complement Forward 5 8 0.00250079 Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB Alignment: BBGGGGCGGGGCGGB ----GGCGGGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 7 Motif 7 Original Motif Reverse Complement Forward 5 8 0.0149958 Consensus sequence (original motif): CSKCCCCGCCCCSY Consensus sequence (reverse complement motif): MSGGGGCGGGGYSG Alignment: MSGGGGCGGGGYSG ----GGCGGGGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 50 TFF11 Reverse Complement Reverse Complement Backward 7 8 0.0348969 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GCVCCGCCMCCYCC GCCCCGCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 27 Klf4 Original Motif Original Motif Forward 3 8 0.0349983 Consensus sequence (original motif): DGGGYGKGGC Consensus sequence (reverse complement motif): GCCYCMCCCD Alignment: DGGGYGKGGC --GGCGGGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 22 Zfx Reverse Complement Reverse Complement Forward 4 8 0.0708224 Consensus sequence (original motif): BBVGCCBVGGCCTV Consensus sequence (reverse complement motif): VAGGCCBBGGCVBB Alignment: VAGGCCBBGGCVBB ---GCCCCGCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- **************************************************************************************************************************************************************************************************** **************************************************************** Significant Motifs - Global and Local Matching (Highest to Lowest) **************************************************************** Dataset #: 3 Motif ID: 24 Motif name: SP1 Consensus sequence (original motif): CCCCKCCCCC Consensus sequence (reverse complement motif): GGGGGYGGGG ************************************************************** Best Matches for Significant Motif ID 24 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 7 Motif 7 Reverse Complement Reverse Complement Backward 4 10 0.00451594 Consensus sequence (original motif): CSKCCCCGCCCCSY Consensus sequence (reverse complement motif): MSGGGGCGGGGYSG Alignment: MSGGGGCGGGGYSG -GGGGGYGGGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 36 csGCCCCGCCCCsc Reverse Complement Reverse Complement Backward 4 10 0.00965796 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: BBGGGGCGGGGCVD -GGGGGYGGGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 38 cccGCCCCGCCCCsb Original Motif Original Motif Forward 5 10 0.0127292 Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB Alignment: BCCGCCCCGCCCCBB ----CCCCKCCCCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 50 TFF11 Reverse Complement Original Motif Forward 4 10 0.0174405 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GGMGGRGGCGGVGC ---GGGGGYGGGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 54 TFM12 Original Motif Original Motif Forward 7 10 0.0301548 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: CYYCBBCYYYTCCHCCTYYY ------CCCCKCCCCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 21 Motif name: Motif 21 Consensus sequence (original motif): ATAAAA Consensus sequence (reverse complement motif): TTTTAT ************************************************************** Best Matches for Significant Motif ID 21 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 15 Motif 15 Reverse Complement Reverse Complement Forward 1 6 0 Consensus sequence (original motif): ATMACAATAAAA Consensus sequence (reverse complement motif): TTTTATTGTYAT Alignment: TTTTATTGTYAT TTTTAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 5 Motif 5 Reverse Complement Reverse Complement Backward 6 6 0.0208333 Consensus sequence (original motif): AWTAAATAYAATTT Consensus sequence (reverse complement motif): AAATTKTATTTAWT Alignment: AAATTKTATTTAWT ---TTTTAT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 8 Motif 8 Original Motif Original Motif Backward 4 6 0.0208333 Consensus sequence (original motif): AAATRWTAAAATCA Consensus sequence (reverse complement motif): TGATTTTAWKATTT Alignment: AAATRWTAAAATCA -----ATAAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 11 Motif 11 Reverse Complement Original Motif Backward 2 6 0.0208333 Consensus sequence (original motif): ATTTWATGAAA Consensus sequence (reverse complement motif): TTTCATWAAAT Alignment: ATTTWATGAAA ----TTTTAT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 10 Motif 10 Reverse Complement Original Motif Backward 1 6 0.0416667 Consensus sequence (original motif): TTTCATAAWT Consensus sequence (reverse complement motif): AWTTATGAAA Alignment: TTTCATAAWT ----TTTTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 45 Motif name: wbgTAAATAww Consensus sequence (original motif): DBGTAAATAHD Consensus sequence (reverse complement motif): DHTATTTACBD ************************************************************** Best Matches for Significant Motif ID 45 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 37 tkAAATAATAtw Original Motif Original Motif Backward 1 11 0.0162338 Consensus sequence (original motif): HDAAATAATAHW Consensus sequence (reverse complement motif): WHTATTATTTDH Alignment: HDAAATAATAHW -DBGTAAATAHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 41 wwAAATAATAtw Reverse Complement Reverse Complement Backward 2 11 0.0164863 Consensus sequence (original motif): HDAAATAATADD Consensus sequence (reverse complement motif): DDTATTATTTDH Alignment: DDTATTATTTDH DHTATTTACBD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 56 TFM11 Reverse Complement Reverse Complement Forward 15 11 0.0192768 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: TWVHWWWYTTTYTTTTTHTTTVWBH --------------DHTATTTACBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 9 Motif 9 Reverse Complement Original Motif Backward 4 11 0.0250541 Consensus sequence (original motif): AATHATATWTHAAA Consensus sequence (reverse complement motif): TTTDAWATATHATT Alignment: AATHATATWTHAAA DHTATTTACBD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 6 Motif 6 Original Motif Original Motif Backward 1 11 0.027895 Consensus sequence (original motif): AATTYDGAARTAWW Consensus sequence (reverse complement motif): WWTAKTTCDKAATT Alignment: AATTYDGAARTAWW ---DBGTAAATAHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 29 Motif name: HIF1AARNT Consensus sequence (original motif): VBACGTGV Consensus sequence (reverse complement motif): VCACGTBV ************************************************************** Best Matches for Significant Motif ID 29 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 33 Mycn Original Motif Reverse Complement Backward 2 8 0.0123101 Consensus sequence (original motif): HSCACGTGGC Consensus sequence (reverse complement motif): GCCACGTGSD Alignment: GCCACGTGSD -VBACGTGV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 34 Myc Original Motif Reverse Complement Backward 2 8 0.0144491 Consensus sequence (original motif): VGCACGTGGH Consensus sequence (reverse complement motif): DCCACGTGCV Alignment: DCCACGTGCV -VBACGTGV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 40 kcACCTGCAgc Reverse Complement Reverse Complement Backward 1 8 0.0295473 Consensus sequence (original motif): BCACCTGCABC Consensus sequence (reverse complement motif): GBTGCAGGTGB Alignment: GBTGCAGGTGB ---VCACGTBV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 42 sSGTCACGTGACSs Reverse Complement Original Motif Forward 4 8 0.0314837 Consensus sequence (original motif): SGGTCACGTGACCS Consensus sequence (reverse complement motif): SGGTCACGTGACCS Alignment: SGGTCACGTGACCS ---VCACGTBV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 26 MIZF Reverse Complement Reverse Complement Forward 3 8 0.0377204 Consensus sequence (original motif): BAACGTCCGC Consensus sequence (reverse complement motif): GCGGACGTTV Alignment: GCGGACGTTV --VCACGTBV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 32 Motif name: ArntAhr Consensus sequence (original motif): YGCGTG Consensus sequence (reverse complement motif): CACGCM ************************************************************** Best Matches for Significant Motif ID 32 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 23 Egr1 Original Motif Original Motif Forward 1 6 0 Consensus sequence (original motif): HGCGTGGGCGK Consensus sequence (reverse complement motif): YCGCCCACGCH Alignment: HGCGTGGGCGK YGCGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 29 HIF1AARNT Original Motif Original Motif Backward 2 6 0.0112447 Consensus sequence (original motif): VBACGTGV Consensus sequence (reverse complement motif): VCACGTBV Alignment: VBACGTGV -YGCGTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 33 Mycn Original Motif Reverse Complement Forward 3 6 0.0377949 Consensus sequence (original motif): HSCACGTGGC Consensus sequence (reverse complement motif): GCCACGTGSD Alignment: GCCACGTGSD --YGCGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 36 csGCCCCGCCCCsc Reverse Complement Original Motif Forward 5 6 0.0396403 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: HVGCCCCGCCCCBB ----CACGCM---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 34 Myc Original Motif Reverse Complement Backward 3 6 0.0399214 Consensus sequence (original motif): VGCACGTGGH Consensus sequence (reverse complement motif): DCCACGTGCV Alignment: DCCACGTGCV --YGCGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- **************************************************************************************************************************************************************************************************** ********************************************************************** Best Matches for Each Motif (Highest to Lowest) ***************************************************************************** Dataset #: 1 Motif ID: 1 Motif name: Motif 1 Consensus sequence (original motif): GGCGGGGC Consensus sequence (reverse complement motif): GCCCCGCC ************************************************************************ Best Matches for Motif ID 1 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 36 csGCCCCGCCCCsc Original Motif Reverse Complement Backward 3 8 0 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: BBGGGGCGGGGCVD ----GGCGGGGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 38 cccGCCCCGCCCCsb Original Motif Reverse Complement Forward 5 8 0.00250079 Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB Alignment: BBGGGGCGGGGCGGB ----GGCGGGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 7 Motif 7 Original Motif Reverse Complement Forward 5 8 0.0149958 Consensus sequence (original motif): CSKCCCCGCCCCSY Consensus sequence (reverse complement motif): MSGGGGCGGGGYSG Alignment: MSGGGGCGGGGYSG ----GGCGGGGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 50 TFF11 Reverse Complement Reverse Complement Backward 7 8 0.0348969 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GCVCCGCCMCCYCC GCCCCGCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 27 Klf4 Original Motif Original Motif Forward 3 8 0.0349983 Consensus sequence (original motif): DGGGYGKGGC Consensus sequence (reverse complement motif): GCCYCMCCCD Alignment: DGGGYGKGGC --GGCGGGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 22 Zfx Reverse Complement Reverse Complement Forward 4 8 0.0708224 Consensus sequence (original motif): BBVGCCBVGGCCTV Consensus sequence (reverse complement motif): VAGGCCBBGGCVBB Alignment: VAGGCCBBGGCVBB ---GCCCCGCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 2 Motif name: Motif 2 Consensus sequence (original motif): RGRAGARRGARRAR Consensus sequence (reverse complement motif): MTMMTCMMTCTKCK ************************************************************************ Best Matches for Motif ID 2 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 51 TFM2 Original Motif Original Motif Backward 1 14 0.00948131 Consensus sequence (original motif): RGRGGAGRRGGHGGDG Consensus sequence (reverse complement motif): CHCCBCCKMCTCCKCM Alignment: RGRGGAGRRGGHGGDG --RGRAGARRGARRAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 31 Pax5 Reverse Complement Reverse Complement Forward 7 14 0.047364 Consensus sequence (original motif): DGVBCABTGDWGCGKRRCSR Consensus sequence (reverse complement motif): MSGKKRCGCWDCABTGBBCD Alignment: MSGKKRCGCWDCABTGBBCD ------MTMMTCMMTCTKCK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 56 TFM11 Original Motif Original Motif Backward 3 14 0.0541717 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: HDWVAAAHAAAAAMAAAMWWWHBWA ---------RGRAGARRGARRAR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 54 TFM12 Reverse Complement Original Motif Forward 7 14 0.0545069 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: CYYCBBCYYYTCCHCCTYYY ------MTMMTCMMTCTKCK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 52 TFM1 Original Motif Reverse Complement Backward 4 14 0.0558935 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW Alignment: ABAAAAAAWHAAAAARAW -RGRAGARRGARRAR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 3 Motif name: Motif 3 Consensus sequence (original motif): AWAAAWTWAAASWA Consensus sequence (reverse complement motif): TWSTTTWAWTTTWT ************************************************************************ Best Matches for Motif ID 3 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 56 TFM11 Original Motif Original Motif Forward 7 14 0.0137914 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: HDWVAAAHAAAAAMAAAMWWWHBWA ------AWAAAWTWAAASWA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 52 TFM1 Original Motif Reverse Complement Backward 1 14 0.0162962 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW Alignment: ABAAAAAAWHAAAAARAW ----AWAAAWTWAAASWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 55 TFM13 Original Motif Original Motif Forward 3 14 0.037679 Consensus sequence (original motif): ATKAAWTTTTRMAABAHHTW Consensus sequence (reverse complement motif): WAHHTVTTYKAAAAWTTRAT Alignment: ATKAAWTTTTRMAABAHHTW --AWAAAWTWAAASWA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 8 Motif 8 Reverse Complement Reverse Complement Backward 1 14 0.0423952 Consensus sequence (original motif): AAATRWTAAAATCA Consensus sequence (reverse complement motif): TGATTTTAWKATTT Alignment: TGATTTTAWKATTT TWSTTTWAWTTTWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 53 TFM3 Original Motif Reverse Complement Forward 5 14 0.0456419 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW Alignment: TWAAWTTVTGAAAAAHWW ----AWAAAWTWAAASWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 4 Motif name: Motif 4 Consensus sequence (original motif): AAAAWTTRCWT Consensus sequence (reverse complement motif): AWGKAAWTTTT ************************************************************************ Best Matches for Motif ID 4 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 56 TFM11 Original Motif Original Motif Forward 14 11 0.0718583 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: HDWVAAAHAAAAAMAAAMWWWHBWA -------------AAAAWTTRCWT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 55 TFM13 Reverse Complement Original Motif Backward 10 11 0.0727073 Consensus sequence (original motif): ATKAAWTTTTRMAABAHHTW Consensus sequence (reverse complement motif): WAHHTVTTYKAAAAWTTRAT Alignment: ATKAAWTTTTRMAABAHHTW AWGKAAWTTTT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 52 TFM1 Reverse Complement Original Motif Backward 5 11 0.0748297 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW Alignment: WTKTTTTTHWTTTTTTBT ---AWGKAAWTTTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 5 Motif 5 Original Motif Reverse Complement Backward 4 11 0.0786484 Consensus sequence (original motif): AWTAAATAYAATTT Consensus sequence (reverse complement motif): AAATTKTATTTAWT Alignment: AAATTKTATTTAWT AAAAWTTRCWT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 9 Motif 9 Reverse Complement Original Motif Backward 4 11 0.0820375 Consensus sequence (original motif): AATHATATWTHAAA Consensus sequence (reverse complement motif): TTTDAWATATHATT Alignment: AATHATATWTHAAA AWGKAAWTTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 5 Motif name: Motif 5 Consensus sequence (original motif): AWTAAATAYAATTT Consensus sequence (reverse complement motif): AAATTKTATTTAWT ************************************************************************ Best Matches for Motif ID 5 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 3 Motif 3 Reverse Complement Reverse Complement Backward 1 14 0.101648 Consensus sequence (original motif): AWAAAWTWAAASWA Consensus sequence (reverse complement motif): TWSTTTWAWTTTWT Alignment: TWSTTTWAWTTTWT AAATTKTATTTAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 8 Motif 8 Reverse Complement Reverse Complement Forward 1 14 0.107143 Consensus sequence (original motif): AAATRWTAAAATCA Consensus sequence (reverse complement motif): TGATTTTAWKATTT Alignment: TGATTTTAWKATTT AAATTKTATTTAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 56 TFM11 Reverse Complement Reverse Complement Backward 6 14 0.109769 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: TWVHWWWYTTTYTTTTTHTTTVWBH ------AAATTKTATTTAWT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 52 TFM1 Reverse Complement Original Motif Backward 4 14 0.110348 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW Alignment: WTKTTTTTHWTTTTTTBT -AAATTKTATTTAWT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 6 Motif 6 Reverse Complement Original Motif Backward 1 14 0.111607 Consensus sequence (original motif): AATTYDGAARTAWW Consensus sequence (reverse complement motif): WWTAKTTCDKAATT Alignment: AATTYDGAARTAWW AAATTKTATTTAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 6 Motif name: Motif 6 Consensus sequence (original motif): AATTYDGAARTAWW Consensus sequence (reverse complement motif): WWTAKTTCDKAATT ************************************************************************ Best Matches for Motif ID 6 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 53 TFM3 Reverse Complement Original Motif Backward 4 14 0.0325081 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW Alignment: WWHTTTTTCABAAWTTWA -WWTAKTTCDKAATT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 55 TFM13 Original Motif Original Motif Forward 5 14 0.0349702 Consensus sequence (original motif): ATKAAWTTTTRMAABAHHTW Consensus sequence (reverse complement motif): WAHHTVTTYKAAAAWTTRAT Alignment: ATKAAWTTTTRMAABAHHTW ----AATTYDGAARTAWW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 56 TFM11 Reverse Complement Reverse Complement Backward 9 14 0.0626838 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: TWVHWWWYTTTYTTTTTHTTTVWBH ---WWTAKTTCDKAATT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 52 TFM1 Reverse Complement Original Motif Forward 2 14 0.0667239 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW Alignment: WTKTTTTTHWTTTTTTBT -WWTAKTTCDKAATT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 5 Motif 5 Reverse Complement Original Motif Forward 1 14 0.0741071 Consensus sequence (original motif): AWTAAATAYAATTT Consensus sequence (reverse complement motif): AAATTKTATTTAWT Alignment: AWTAAATAYAATTT WWTAKTTCDKAATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 7 Motif name: Motif 7 Consensus sequence (original motif): CSKCCCCGCCCCSY Consensus sequence (reverse complement motif): MSGGGGCGGGGYSG ************************************************************************ Best Matches for Motif ID 7 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 36 csGCCCCGCCCCsc Original Motif Original Motif Forward 1 14 0 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: HVGCCCCGCCCCBB CSKCCCCGCCCCSY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 38 cccGCCCCGCCCCsb Original Motif Original Motif Backward 1 14 0.0012818 Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB Alignment: BCCGCCCCGCCCCBB -CSKCCCCGCCCCSY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 54 TFM12 Original Motif Original Motif Forward 4 14 0.0537802 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: CYYCBBCYYYTCCHCCTYYY ---CSKCCCCGCCCCSY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 31 Pax5 Reverse Complement Original Motif Forward 7 14 0.0662825 Consensus sequence (original motif): DGVBCABTGDWGCGKRRCSR Consensus sequence (reverse complement motif): MSGKKRCGCWDCABTGBBCD Alignment: DGVBCABTGDWGCGKRRCSR ------MSGGGGCGGGGYSG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 51 TFM2 Original Motif Reverse Complement Forward 1 14 0.0758609 Consensus sequence (original motif): RGRGGAGRRGGHGGDG Consensus sequence (reverse complement motif): CHCCBCCKMCTCCKCM Alignment: CHCCBCCKMCTCCKCM CSKCCCCGCCCCSY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 8 Motif name: Motif 8 Consensus sequence (original motif): AAATRWTAAAATCA Consensus sequence (reverse complement motif): TGATTTTAWKATTT ************************************************************************ Best Matches for Motif ID 8 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 3 Motif 3 Reverse Complement Reverse Complement Backward 1 14 0.0961539 Consensus sequence (original motif): AWAAAWTWAAASWA Consensus sequence (reverse complement motif): TWSTTTWAWTTTWT Alignment: TWSTTTWAWTTTWT TGATTTTAWKATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 52 TFM1 Reverse Complement Original Motif Backward 4 14 0.10348 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW Alignment: WTKTTTTTHWTTTTTTBT -TGATTTTAWKATTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 5 Motif 5 Reverse Complement Reverse Complement Forward 1 14 0.107143 Consensus sequence (original motif): AWTAAATAYAATTT Consensus sequence (reverse complement motif): AAATTKTATTTAWT Alignment: AAATTKTATTTAWT TGATTTTAWKATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 56 TFM11 Original Motif Original Motif Backward 7 14 0.111345 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: HDWVAAAHAAAAAMAAAMWWWHBWA -----AAATRWTAAAATCA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 55 TFM13 Reverse Complement Reverse Complement Backward 4 14 0.11369 Consensus sequence (original motif): ATKAAWTTTTRMAABAHHTW Consensus sequence (reverse complement motif): WAHHTVTTYKAAAAWTTRAT Alignment: WAHHTVTTYKAAAAWTTRAT ---TGATTTTAWKATTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 9 Motif name: Motif 9 Consensus sequence (original motif): AATHATATWTHAAA Consensus sequence (reverse complement motif): TTTDAWATATHATT ************************************************************************ Best Matches for Motif ID 9 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 55 TFM13 Reverse Complement Reverse Complement Backward 1 14 0.0332341 Consensus sequence (original motif): ATKAAWTTTTRMAABAHHTW Consensus sequence (reverse complement motif): WAHHTVTTYKAAAAWTTRAT Alignment: WAHHTVTTYKAAAAWTTRAT ------TTTDAWATATHATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 53 TFM3 Reverse Complement Original Motif Backward 2 14 0.0486562 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW Alignment: WWHTTTTTCABAAWTTWA ---TTTDAWATATHATT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 52 TFM1 Reverse Complement Original Motif Forward 4 14 0.0528083 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW Alignment: WTKTTTTTHWTTTTTTBT ---TTTDAWATATHATT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 56 TFM11 Reverse Complement Original Motif Forward 1 14 0.054155 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: HDWVAAAHAAAAAMAAAMWWWHBWA TTTDAWATATHATT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 3 Motif 3 Original Motif Reverse Complement Backward 1 14 0.0675748 Consensus sequence (original motif): AWAAAWTWAAASWA Consensus sequence (reverse complement motif): TWSTTTWAWTTTWT Alignment: TWSTTTWAWTTTWT AATHATATWTHAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 10 Motif name: Motif 10 Consensus sequence (original motif): TTTCATAAWT Consensus sequence (reverse complement motif): AWTTATGAAA ************************************************************************ Best Matches for Motif ID 10 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 11 Motif 11 Reverse Complement Original Motif Forward 2 10 0.01875 Consensus sequence (original motif): ATTTWATGAAA Consensus sequence (reverse complement motif): TTTCATWAAAT Alignment: ATTTWATGAAA -AWTTATGAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 6 Motif 6 Reverse Complement Original Motif Forward 5 10 0.0375 Consensus sequence (original motif): AATTYDGAARTAWW Consensus sequence (reverse complement motif): WWTAKTTCDKAATT Alignment: AATTYDGAARTAWW ----AWTTATGAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 8 Motif 8 Original Motif Reverse Complement Backward 4 10 0.04375 Consensus sequence (original motif): AAATRWTAAAATCA Consensus sequence (reverse complement motif): TGATTTTAWKATTT Alignment: TGATTTTAWKATTT -TTTCATAAWT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 53 TFM3 Reverse Complement Reverse Complement Backward 6 10 0.0448864 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW Alignment: TWAAWTTVTGAAAAAHWW ---AWTTATGAAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 55 TFM13 Reverse Complement Original Motif Forward 5 10 0.0545833 Consensus sequence (original motif): ATKAAWTTTTRMAABAHHTW Consensus sequence (reverse complement motif): WAHHTVTTYKAAAAWTTRAT Alignment: ATKAAWTTTTRMAABAHHTW ----AWTTATGAAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 11 Motif name: Motif 11 Consensus sequence (original motif): ATTTWATGAAA Consensus sequence (reverse complement motif): TTTCATWAAAT ************************************************************************ Best Matches for Motif ID 11 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 5 Motif 5 Reverse Complement Reverse Complement Forward 4 11 0.0795455 Consensus sequence (original motif): AWTAAATAYAATTT Consensus sequence (reverse complement motif): AAATTKTATTTAWT Alignment: AAATTKTATTTAWT ---TTTCATWAAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 8 Motif 8 Reverse Complement Original Motif Forward 3 11 0.0795455 Consensus sequence (original motif): AAATRWTAAAATCA Consensus sequence (reverse complement motif): TGATTTTAWKATTT Alignment: AAATRWTAAAATCA --TTTCATWAAAT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 53 TFM3 Reverse Complement Original Motif Forward 6 11 0.0991736 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW Alignment: WWHTTTTTCABAAWTTWA -----TTTCATWAAAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 18 Motif 18 Original Motif Reverse Complement Backward 1 11 0.102273 Consensus sequence (original motif): TTAGWTWATAA Consensus sequence (reverse complement motif): TTATWAWCTAA Alignment: TTATWAWCTAA ATTTWATGAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 15 Motif 15 Original Motif Reverse Complement Forward 1 11 0.102273 Consensus sequence (original motif): ATMACAATAAAA Consensus sequence (reverse complement motif): TTTTATTGTYAT Alignment: TTTTATTGTYAT ATTTWATGAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 12 Motif name: Motif 12 Consensus sequence (original motif): AAAACAAA Consensus sequence (reverse complement motif): TTTGTTTT ************************************************************************ Best Matches for Motif ID 12 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 15 Motif 15 Reverse Complement Reverse Complement Backward 4 8 0.0625 Consensus sequence (original motif): ATMACAATAAAA Consensus sequence (reverse complement motif): TTTTATTGTYAT Alignment: TTTTATTGTYAT -TTTGTTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 Motif 17 Original Motif Original Motif Backward 2 8 0.0625 Consensus sequence (original motif): AAAAATGAAT Consensus sequence (reverse complement motif): ATTCATTTTT Alignment: AAAAATGAAT -AAAACAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 5 Motif 5 Original Motif Original Motif Backward 3 8 0.078125 Consensus sequence (original motif): AWTAAATAYAATTT Consensus sequence (reverse complement motif): AAATTKTATTTAWT Alignment: AWTAAATAYAATTT ----AAAACAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 14 Motif 14 Original Motif Original Motif Backward 1 8 0.078125 Consensus sequence (original motif): AWAAATAA Consensus sequence (reverse complement motif): TTATTTWT Alignment: AWAAATAA AAAACAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 16 Motif 16 Original Motif Reverse Complement Backward 5 8 0.078125 Consensus sequence (original motif): ACAAWTRATTTTGA Consensus sequence (reverse complement motif): TCAAAATKAWTTGT Alignment: TCAAAATKAWTTGT --AAAACAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 13 Motif name: Motif 13 Consensus sequence (original motif): AAAGATTT Consensus sequence (reverse complement motif): AAATCTTT ************************************************************************ Best Matches for Motif ID 13 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 20 Motif 20 Reverse Complement Reverse Complement Forward 1 8 0 Consensus sequence (original motif): TTMAAAGATTT Consensus sequence (reverse complement motif): AAATCTTTYAA Alignment: AAATCTTTYAA AAATCTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 16 Motif 16 Original Motif Reverse Complement Forward 5 8 0.0625 Consensus sequence (original motif): ACAAWTRATTTTGA Consensus sequence (reverse complement motif): TCAAAATKAWTTGT Alignment: TCAAAATKAWTTGT ----AAAGATTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 8 Motif 8 Reverse Complement Original Motif Backward 1 8 0.0625 Consensus sequence (original motif): AAATRWTAAAATCA Consensus sequence (reverse complement motif): TGATTTTAWKATTT Alignment: AAATRWTAAAATCA ------AAATCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 19 Motif 19 Original Motif Original Motif Backward 3 8 0.078125 Consensus sequence (original motif): TTCWTAGATTAWA Consensus sequence (reverse complement motif): TWTAATCTAWGAA Alignment: TTCWTAGATTAWA ---AAAGATTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 5 Motif 5 Reverse Complement Reverse Complement Forward 1 8 0.078125 Consensus sequence (original motif): AWTAAATAYAATTT Consensus sequence (reverse complement motif): AAATTKTATTTAWT Alignment: AAATTKTATTTAWT AAATCTTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 14 Motif name: Motif 14 Consensus sequence (original motif): AWAAATAA Consensus sequence (reverse complement motif): TTATTTWT ************************************************************************ Best Matches for Motif ID 14 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 5 Motif 5 Reverse Complement Reverse Complement Forward 6 8 0.046875 Consensus sequence (original motif): AWTAAATAYAATTT Consensus sequence (reverse complement motif): AAATTKTATTTAWT Alignment: AAATTKTATTTAWT -----TTATTTWT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 17 Motif 17 Original Motif Original Motif Forward 1 8 0.046875 Consensus sequence (original motif): AAAAATGAAT Consensus sequence (reverse complement motif): ATTCATTTTT Alignment: AAAAATGAAT AWAAATAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 16 Motif 16 Reverse Complement Reverse Complement Backward 1 8 0.0625 Consensus sequence (original motif): ACAAWTRATTTTGA Consensus sequence (reverse complement motif): TCAAAATKAWTTGT Alignment: TCAAAATKAWTTGT ------TTATTTWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 15 Motif 15 Original Motif Original Motif Backward 3 8 0.0625 Consensus sequence (original motif): ATMACAATAAAA Consensus sequence (reverse complement motif): TTTTATTGTYAT Alignment: ATMACAATAAAA --AWAAATAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 41 wwAAATAATAtw Original Motif Original Motif Backward 5 8 0.0636574 Consensus sequence (original motif): HDAAATAATADD Consensus sequence (reverse complement motif): DDTATTATTTDH Alignment: HDAAATAATADD AWAAATAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 15 Motif name: Motif 15 Consensus sequence (original motif): ATMACAATAAAA Consensus sequence (reverse complement motif): TTTTATTGTYAT ************************************************************************ Best Matches for Motif ID 15 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 8 Motif 8 Original Motif Original Motif Forward 3 12 0.104167 Consensus sequence (original motif): AAATRWTAAAATCA Consensus sequence (reverse complement motif): TGATTTTAWKATTT Alignment: AAATRWTAAAATCA --ATMACAATAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 56 TFM11 Reverse Complement Reverse Complement Backward 6 12 0.109681 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: TWVHWWWYTTTYTTTTTHTTTVWBH --------TTTTATTGTYAT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 5 Motif 5 Original Motif Original Motif Backward 2 12 0.114583 Consensus sequence (original motif): AWTAAATAYAATTT Consensus sequence (reverse complement motif): AAATTKTATTTAWT Alignment: AWTAAATAYAATTT -ATMACAATAAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 3 Motif 3 Original Motif Original Motif Forward 1 12 0.114583 Consensus sequence (original motif): AWAAAWTWAAASWA Consensus sequence (reverse complement motif): TWSTTTWAWTTTWT Alignment: AWAAAWTWAAASWA ATMACAATAAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 52 TFM1 Original Motif Reverse Complement Forward 3 12 0.115652 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW Alignment: ABAAAAAAWHAAAAARAW --ATMACAATAAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 16 Motif name: Motif 16 Consensus sequence (original motif): ACAAWTRATTTTGA Consensus sequence (reverse complement motif): TCAAAATKAWTTGT ************************************************************************ Best Matches for Motif ID 16 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 5 Motif 5 Reverse Complement Original Motif Backward 1 14 0.1 Consensus sequence (original motif): AWTAAATAYAATTT Consensus sequence (reverse complement motif): AAATTKTATTTAWT Alignment: AWTAAATAYAATTT TCAAAATKAWTTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 55 TFM13 Reverse Complement Original Motif Forward 8 13 0.599359 Consensus sequence (original motif): ATKAAWTTTTRMAABAHHTW Consensus sequence (reverse complement motif): WAHHTVTTYKAAAAWTTRAT Alignment: ATKAAWTTTTRMAABAHHTW- -------TCAAAATKAWTTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 9 Motif 9 Original Motif Original Motif Backward 3 12 1.08264 Consensus sequence (original motif): AATHATATWTHAAA Consensus sequence (reverse complement motif): TTTDAWATATHATT Alignment: --AATHATATWTHAAA ACAAWTRATTTTGA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 37 tkAAATAATAtw Reverse Complement Reverse Complement Backward 1 12 1.08403 Consensus sequence (original motif): HDAAATAATAHW Consensus sequence (reverse complement motif): WHTATTATTTDH Alignment: --WHTATTATTTDH TCAAAATKAWTTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 41 wwAAATAATAtw Reverse Complement Reverse Complement Backward 1 12 1.08881 Consensus sequence (original motif): HDAAATAATADD Consensus sequence (reverse complement motif): DDTATTATTTDH Alignment: --DDTATTATTTDH TCAAAATKAWTTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 17 Motif name: Motif 17 Consensus sequence (original motif): AAAAATGAAT Consensus sequence (reverse complement motif): ATTCATTTTT ************************************************************************ Best Matches for Motif ID 17 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 16 Motif 16 Reverse Complement Original Motif Backward 4 10 0.05 Consensus sequence (original motif): ACAAWTRATTTTGA Consensus sequence (reverse complement motif): TCAAAATKAWTTGT Alignment: ACAAWTRATTTTGA -ATTCATTTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 5 Motif 5 Original Motif Original Motif Forward 4 10 0.0875 Consensus sequence (original motif): AWTAAATAYAATTT Consensus sequence (reverse complement motif): AAATTKTATTTAWT Alignment: AWTAAATAYAATTT ---AAAAATGAAT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 15 Motif 15 Original Motif Original Motif Forward 3 10 0.0875 Consensus sequence (original motif): ATMACAATAAAA Consensus sequence (reverse complement motif): TTTTATTGTYAT Alignment: ATMACAATAAAA --AAAAATGAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 10 Motif 10 Original Motif Reverse Complement Backward 1 10 0.0875 Consensus sequence (original motif): TTTCATAAWT Consensus sequence (reverse complement motif): AWTTATGAAA Alignment: AWTTATGAAA AAAAATGAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 4 Motif 4 Reverse Complement Reverse Complement Backward 1 10 0.0947369 Consensus sequence (original motif): AAAAWTTRCWT Consensus sequence (reverse complement motif): AWGKAAWTTTT Alignment: AWGKAAWTTTT -ATTCATTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 18 Motif name: Motif 18 Consensus sequence (original motif): TTAGWTWATAA Consensus sequence (reverse complement motif): TTATWAWCTAA ************************************************************************ Best Matches for Motif ID 18 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 6 Motif 6 Reverse Complement Original Motif Forward 2 11 0.09375 Consensus sequence (original motif): AATTYDGAARTAWW Consensus sequence (reverse complement motif): WWTAKTTCDKAATT Alignment: AATTYDGAARTAWW -TTATWAWCTAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 8 Motif 8 Reverse Complement Original Motif Backward 4 11 0.102273 Consensus sequence (original motif): AAATRWTAAAATCA Consensus sequence (reverse complement motif): TGATTTTAWKATTT Alignment: AAATRWTAAAATCA TTATWAWCTAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 11 Motif 11 Original Motif Reverse Complement Forward 1 11 0.102273 Consensus sequence (original motif): ATTTWATGAAA Consensus sequence (reverse complement motif): TTTCATWAAAT Alignment: TTTCATWAAAT TTAGWTWATAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 37 tkAAATAATAtw Original Motif Original Motif Backward 2 11 0.102273 Consensus sequence (original motif): HDAAATAATAHW Consensus sequence (reverse complement motif): WHTATTATTTDH Alignment: HDAAATAATAHW TTAGWTWATAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 41 wwAAATAATAtw Reverse Complement Reverse Complement Backward 1 11 0.104798 Consensus sequence (original motif): HDAAATAATADD Consensus sequence (reverse complement motif): DDTATTATTTDH Alignment: DDTATTATTTDH -TTATWAWCTAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 19 Motif name: Motif 19 Consensus sequence (original motif): TTCWTAGATTAWA Consensus sequence (reverse complement motif): TWTAATCTAWGAA ************************************************************************ Best Matches for Motif ID 19 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 9 Motif 9 Original Motif Original Motif Forward 2 13 0.0641025 Consensus sequence (original motif): AATHATATWTHAAA Consensus sequence (reverse complement motif): TTTDAWATATHATT Alignment: AATHATATWTHAAA -TTCWTAGATTAWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 55 TFM13 Original Motif Reverse Complement Forward 7 13 0.0762821 Consensus sequence (original motif): ATKAAWTTTTRMAABAHHTW Consensus sequence (reverse complement motif): WAHHTVTTYKAAAAWTTRAT Alignment: WAHHTVTTYKAAAAWTTRAT ------TTCWTAGATTAWA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 56 TFM11 Reverse Complement Original Motif Backward 12 13 0.0810709 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: HDWVAAAHAAAAAMAAAMWWWHBWA -TWTAATCTAWGAA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 53 TFM3 Original Motif Reverse Complement Backward 1 13 0.0815851 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW Alignment: TWAAWTTVTGAAAAAHWW -----TTCWTAGATTAWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 6 Motif 6 Original Motif Original Motif Forward 3 12 0.5625 Consensus sequence (original motif): AATTYDGAARTAWW Consensus sequence (reverse complement motif): WWTAKTTCDKAATT Alignment: AATTYDGAARTAWW- --TTCWTAGATTAWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 20 Motif name: Motif 20 Consensus sequence (original motif): TTMAAAGATTT Consensus sequence (reverse complement motif): AAATCTTTYAA ************************************************************************ Best Matches for Motif ID 20 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 8 Motif 8 Reverse Complement Original Motif Forward 4 11 0.0681818 Consensus sequence (original motif): AAATRWTAAAATCA Consensus sequence (reverse complement motif): TGATTTTAWKATTT Alignment: AAATRWTAAAATCA ---AAATCTTTYAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 19 Motif 19 Original Motif Original Motif Forward 1 11 0.0681818 Consensus sequence (original motif): TTCWTAGATTAWA Consensus sequence (reverse complement motif): TWTAATCTAWGAA Alignment: TTCWTAGATTAWA TTMAAAGATTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 5 Motif 5 Reverse Complement Reverse Complement Forward 2 11 0.102273 Consensus sequence (original motif): AWTAAATAYAATTT Consensus sequence (reverse complement motif): AAATTKTATTTAWT Alignment: AAATTKTATTTAWT -AAATCTTTYAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 16 Motif 16 Original Motif Original Motif Forward 1 11 0.102273 Consensus sequence (original motif): ACAAWTRATTTTGA Consensus sequence (reverse complement motif): TCAAAATKAWTTGT Alignment: ACAAWTRATTTTGA TTMAAAGATTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 9 Motif 9 Original Motif Reverse Complement Backward 2 11 0.106061 Consensus sequence (original motif): AATHATATWTHAAA Consensus sequence (reverse complement motif): TTTDAWATATHATT Alignment: TTTDAWATATHATT --TTMAAAGATTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 21 Motif name: Motif 21 Consensus sequence (original motif): ATAAAA Consensus sequence (reverse complement motif): TTTTAT ************************************************************************ Best Matches for Motif ID 21 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 15 Motif 15 Reverse Complement Reverse Complement Forward 1 6 0 Consensus sequence (original motif): ATMACAATAAAA Consensus sequence (reverse complement motif): TTTTATTGTYAT Alignment: TTTTATTGTYAT TTTTAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 5 Motif 5 Reverse Complement Reverse Complement Backward 6 6 0.0208333 Consensus sequence (original motif): AWTAAATAYAATTT Consensus sequence (reverse complement motif): AAATTKTATTTAWT Alignment: AAATTKTATTTAWT ---TTTTAT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 8 Motif 8 Original Motif Original Motif Backward 4 6 0.0208333 Consensus sequence (original motif): AAATRWTAAAATCA Consensus sequence (reverse complement motif): TGATTTTAWKATTT Alignment: AAATRWTAAAATCA -----ATAAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 11 Motif 11 Reverse Complement Original Motif Backward 2 6 0.0208333 Consensus sequence (original motif): ATTTWATGAAA Consensus sequence (reverse complement motif): TTTCATWAAAT Alignment: ATTTWATGAAA ----TTTTAT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 10 Motif 10 Reverse Complement Original Motif Backward 1 6 0.0416667 Consensus sequence (original motif): TTTCATAAWT Consensus sequence (reverse complement motif): AWTTATGAAA Alignment: TTTCATAAWT ----TTTTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 22 Motif name: Zfx Consensus sequence (original motif): BBVGCCBVGGCCTV Consensus sequence (reverse complement motif): VAGGCCBBGGCVBB ************************************************************************ Best Matches for Motif ID 22 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 38 cccGCCCCGCCCCsb Original Motif Original Motif Forward 1 14 0.0514008 Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB Alignment: BCCGCCCCGCCCCBB BBVGCCBVGGCCTV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 51 TFM2 Original Motif Reverse Complement Backward 2 14 0.0590031 Consensus sequence (original motif): RGRGGAGRRGGHGGDG Consensus sequence (reverse complement motif): CHCCBCCKMCTCCKCM Alignment: CHCCBCCKMCTCCKCM -BBVGCCBVGGCCTV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 31 Pax5 Original Motif Original Motif Backward 5 14 0.0611182 Consensus sequence (original motif): DGVBCABTGDWGCGKRRCSR Consensus sequence (reverse complement motif): MSGKKRCGCWDCABTGBBCD Alignment: DGVBCABTGDWGCGKRRCSR --BBVGCCBVGGCCTV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 54 TFM12 Reverse Complement Reverse Complement Forward 6 14 0.0629383 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: KKKAGGDGGAKKMGBBGKMG -----VAGGCCBBGGCVBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 36 csGCCCCGCCCCsc Reverse Complement Original Motif Forward 1 14 0.0654514 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: HVGCCCCGCCCCBB VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 23 Motif name: Egr1 Consensus sequence (original motif): HGCGTGGGCGK Consensus sequence (reverse complement motif): YCGCCCACGCH ************************************************************************ Best Matches for Motif ID 23 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 50 TFF11 Reverse Complement Reverse Complement Forward 4 11 0.0514701 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GCVCCGCCMCCYCC ---YCGCCCACGCH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 51 TFM2 Reverse Complement Reverse Complement Forward 6 11 0.0698683 Consensus sequence (original motif): RGRGGAGRRGGHGGDG Consensus sequence (reverse complement motif): CHCCBCCKMCTCCKCM Alignment: CHCCBCCKMCTCCKCM -----YCGCCCACGCH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 54 TFM12 Original Motif Reverse Complement Backward 9 11 0.0718056 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: KKKAGGDGGAKKMGBBGKMG -HGCGTGGGCGK-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 38 cccGCCCCGCCCCsb Original Motif Reverse Complement Forward 5 11 0.0730967 Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB Alignment: BBGGGGCGGGGCGGB ----HGCGTGGGCGK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 22 Zfx Original Motif Original Motif Backward 2 11 0.0764878 Consensus sequence (original motif): BBVGCCBVGGCCTV Consensus sequence (reverse complement motif): VAGGCCBBGGCVBB Alignment: BBVGCCBVGGCCTV --HGCGTGGGCGK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 24 Motif name: SP1 Consensus sequence (original motif): CCCCKCCCCC Consensus sequence (reverse complement motif): GGGGGYGGGG ************************************************************************ Best Matches for Motif ID 24 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 7 Motif 7 Reverse Complement Reverse Complement Backward 4 10 0.00451594 Consensus sequence (original motif): CSKCCCCGCCCCSY Consensus sequence (reverse complement motif): MSGGGGCGGGGYSG Alignment: MSGGGGCGGGGYSG -GGGGGYGGGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 36 csGCCCCGCCCCsc Reverse Complement Reverse Complement Backward 4 10 0.00965796 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: BBGGGGCGGGGCVD -GGGGGYGGGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 38 cccGCCCCGCCCCsb Original Motif Original Motif Forward 5 10 0.0127292 Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB Alignment: BCCGCCCCGCCCCBB ----CCCCKCCCCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 50 TFF11 Reverse Complement Original Motif Forward 4 10 0.0174405 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GGMGGRGGCGGVGC ---GGGGGYGGGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 54 TFM12 Original Motif Original Motif Forward 7 10 0.0301548 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: CYYCBBCYYYTCCHCCTYYY ------CCCCKCCCCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 25 Motif name: TFAP2A Consensus sequence (original motif): GCCBBVRGS Consensus sequence (reverse complement motif): SCMVBBGGC ************************************************************************ Best Matches for Motif ID 25 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 22 Zfx Reverse Complement Original Motif Backward 3 9 0.0131247 Consensus sequence (original motif): BBVGCCBVGGCCTV Consensus sequence (reverse complement motif): VAGGCCBBGGCVBB Alignment: BBVGCCBVGGCCTV ---SCMVBBGGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 30 PLAG1 Original Motif Original Motif Forward 4 9 0.0414588 Consensus sequence (original motif): GGGGCCCAAGGGGG Consensus sequence (reverse complement motif): CCCCCTTGGGCCCC Alignment: GGGGCCCAAGGGGG ---GCCBBVRGS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 50 TFF11 Reverse Complement Original Motif Forward 1 9 0.0415732 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GGMGGRGGCGGVGC SCMVBBGGC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 33 Mycn Reverse Complement Original Motif Forward 2 9 0.0550803 Consensus sequence (original motif): HSCACGTGGC Consensus sequence (reverse complement motif): GCCACGTGSD Alignment: HSCACGTGGC -SCMVBBGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 48 TFW3 Original Motif Original Motif Backward 1 9 0.0552877 Consensus sequence (original motif): CGGCYBCGCG Consensus sequence (reverse complement motif): CGCGBMGCCG Alignment: CGGCYBCGCG -GCCBBVRGS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 26 Motif name: MIZF Consensus sequence (original motif): BAACGTCCGC Consensus sequence (reverse complement motif): GCGGACGTTV ************************************************************************ Best Matches for Motif ID 26 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 35 GABPA Reverse Complement Original Motif Forward 1 10 0.0459305 Consensus sequence (original motif): CCGGAAGTGVV Consensus sequence (reverse complement motif): VVCACTTCCGG Alignment: CCGGAAGTGVV GCGGACGTTV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 40 kcACCTGCAgc Original Motif Original Motif Forward 1 10 0.0778314 Consensus sequence (original motif): BCACCTGCABC Consensus sequence (reverse complement motif): GBTGCAGGTGB Alignment: BCACCTGCABC BAACGTCCGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 44 dhACATTCTkh Original Motif Original Motif Forward 1 10 0.0794339 Consensus sequence (original motif): DHACATTCTGH Consensus sequence (reverse complement motif): HCAGAATGTHD Alignment: DHACATTCTGH BAACGTCCGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 42 sSGTCACGTGACSs Original Motif Original Motif Backward 2 10 0.0804061 Consensus sequence (original motif): SGGTCACGTGACCS Consensus sequence (reverse complement motif): SGGTCACGTGACCS Alignment: SGGTCACGTGACCS ---BAACGTCCGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 50 TFF11 Original Motif Reverse Complement Forward 2 10 0.0861006 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GCVCCGCCMCCYCC -BAACGTCCGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 27 Motif name: Klf4 Consensus sequence (original motif): DGGGYGKGGC Consensus sequence (reverse complement motif): GCCYCMCCCD ************************************************************************ Best Matches for Motif ID 27 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 7 Motif 7 Reverse Complement Original Motif Forward 3 10 0.0152457 Consensus sequence (original motif): CSKCCCCGCCCCSY Consensus sequence (reverse complement motif): MSGGGGCGGGGYSG Alignment: CSKCCCCGCCCCSY --GCCYCMCCCD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 36 csGCCCCGCCCCsc Original Motif Reverse Complement Forward 3 10 0.0160185 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: BBGGGGCGGGGCVD --DGGGYGKGGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 38 cccGCCCCGCCCCsb Original Motif Reverse Complement Forward 3 10 0.0194893 Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB Alignment: BBGGGGCGGGGCGGB --DGGGYGKGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 50 TFF11 Original Motif Original Motif Forward 5 10 0.0402906 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GGMGGRGGCGGVGC ----DGGGYGKGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 54 TFM12 Reverse Complement Original Motif Backward 7 10 0.0556427 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: CYYCBBCYYYTCCHCCTYYY ----GCCYCMCCCD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 28 Motif name: E2F1 Consensus sequence (original motif): TTTSGCGC Consensus sequence (reverse complement motif): GCGCSAAA ************************************************************************ Best Matches for Motif ID 28 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 30 PLAG1 Reverse Complement Original Motif Forward 2 8 0.0568827 Consensus sequence (original motif): GGGGCCCAAGGGGG Consensus sequence (reverse complement motif): CCCCCTTGGGCCCC Alignment: GGGGCCCAAGGGGG -GCGCSAAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 39 kCAGCCAATmr Reverse Complement Original Motif Backward 3 8 0.0624791 Consensus sequence (original motif): DCAGCCAATVR Consensus sequence (reverse complement motif): MBATTGGCTGH Alignment: DCAGCCAATVR -GCGCSAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 50 TFF11 Reverse Complement Reverse Complement Backward 4 8 0.0781129 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GCVCCGCCMCCYCC ---GCGCSAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 23 Egr1 Reverse Complement Reverse Complement Backward 4 8 0.0784105 Consensus sequence (original motif): HGCGTGGGCGK Consensus sequence (reverse complement motif): YCGCCCACGCH Alignment: YCGCCCACGCH GCGCSAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 49 TFF1 Reverse Complement Original Motif Forward 3 8 0.0798986 Consensus sequence (original motif): CGGVGCCGCVGC Consensus sequence (reverse complement motif): GCVGCGGCBCCG Alignment: CGGVGCCGCVGC --GCGCSAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 29 Motif name: HIF1AARNT Consensus sequence (original motif): VBACGTGV Consensus sequence (reverse complement motif): VCACGTBV ************************************************************************ Best Matches for Motif ID 29 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 33 Mycn Original Motif Reverse Complement Backward 2 8 0.0123101 Consensus sequence (original motif): HSCACGTGGC Consensus sequence (reverse complement motif): GCCACGTGSD Alignment: GCCACGTGSD -VBACGTGV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 34 Myc Original Motif Reverse Complement Backward 2 8 0.0144491 Consensus sequence (original motif): VGCACGTGGH Consensus sequence (reverse complement motif): DCCACGTGCV Alignment: DCCACGTGCV -VBACGTGV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 40 kcACCTGCAgc Reverse Complement Reverse Complement Backward 1 8 0.0295473 Consensus sequence (original motif): BCACCTGCABC Consensus sequence (reverse complement motif): GBTGCAGGTGB Alignment: GBTGCAGGTGB ---VCACGTBV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 42 sSGTCACGTGACSs Reverse Complement Original Motif Forward 4 8 0.0314837 Consensus sequence (original motif): SGGTCACGTGACCS Consensus sequence (reverse complement motif): SGGTCACGTGACCS Alignment: SGGTCACGTGACCS ---VCACGTBV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 26 MIZF Reverse Complement Reverse Complement Forward 3 8 0.0377204 Consensus sequence (original motif): BAACGTCCGC Consensus sequence (reverse complement motif): GCGGACGTTV Alignment: GCGGACGTTV --VCACGTBV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 30 Motif name: PLAG1 Consensus sequence (original motif): GGGGCCCAAGGGGG Consensus sequence (reverse complement motif): CCCCCTTGGGCCCC ************************************************************************ Best Matches for Motif ID 30 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 54 TFM12 Reverse Complement Original Motif Backward 6 14 0.0876918 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: CYYCBBCYYYTCCHCCTYYY -CCCCCTTGGGCCCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 51 TFM2 Reverse Complement Reverse Complement Forward 3 14 0.0880716 Consensus sequence (original motif): RGRGGAGRRGGHGGDG Consensus sequence (reverse complement motif): CHCCBCCKMCTCCKCM Alignment: CHCCBCCKMCTCCKCM --CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 22 Zfx Original Motif Reverse Complement Forward 1 14 0.0886295 Consensus sequence (original motif): BBVGCCBVGGCCTV Consensus sequence (reverse complement motif): VAGGCCBBGGCVBB Alignment: VAGGCCBBGGCVBB GGGGCCCAAGGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 38 cccGCCCCGCCCCsb Reverse Complement Original Motif Backward 2 14 0.0904945 Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB Alignment: BCCGCCCCGCCCCBB CCCCCTTGGGCCCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 31 Pax5 Original Motif Original Motif Forward 1 14 0.0943783 Consensus sequence (original motif): DGVBCABTGDWGCGKRRCSR Consensus sequence (reverse complement motif): MSGKKRCGCWDCABTGBBCD Alignment: DGVBCABTGDWGCGKRRCSR GGGGCCCAAGGGGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 31 Motif name: Pax5 Consensus sequence (original motif): DGVBCABTGDWGCGKRRCSR Consensus sequence (reverse complement motif): MSGKKRCGCWDCABTGBBCD ************************************************************************ Best Matches for Motif ID 31 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 54 TFM12 Original Motif Reverse Complement Forward 1 20 0.0373929 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: KKKAGGDGGAKKMGBBGKMG DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 56 TFM11 Original Motif Original Motif Backward 6 20 0.0546306 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: HDWVAAAHAAAAAMAAAMWWWHBWA DGVBCABTGDWGCGKRRCSR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 53 TFM3 Original Motif Reverse Complement Forward 2 17 1.5457 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW Alignment: TWAAWTTVTGAAAAAHWW--- -DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 51 TFM2 Reverse Complement Original Motif Forward 1 16 2.0519 Consensus sequence (original motif): RGRGGAGRRGGHGGDG Consensus sequence (reverse complement motif): CHCCBCCKMCTCCKCM Alignment: RGRGGAGRRGGHGGDG---- MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 52 TFM1 Original Motif Reverse Complement Forward 3 16 2.05456 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW Alignment: ABAAAAAAWHAAAAARAW---- --DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 32 Motif name: ArntAhr Consensus sequence (original motif): YGCGTG Consensus sequence (reverse complement motif): CACGCM ************************************************************************ Best Matches for Motif ID 32 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 23 Egr1 Original Motif Original Motif Forward 1 6 0 Consensus sequence (original motif): HGCGTGGGCGK Consensus sequence (reverse complement motif): YCGCCCACGCH Alignment: HGCGTGGGCGK YGCGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 29 HIF1AARNT Original Motif Original Motif Backward 2 6 0.0112447 Consensus sequence (original motif): VBACGTGV Consensus sequence (reverse complement motif): VCACGTBV Alignment: VBACGTGV -YGCGTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 33 Mycn Original Motif Reverse Complement Forward 3 6 0.0377949 Consensus sequence (original motif): HSCACGTGGC Consensus sequence (reverse complement motif): GCCACGTGSD Alignment: GCCACGTGSD --YGCGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 36 csGCCCCGCCCCsc Reverse Complement Original Motif Forward 5 6 0.0396403 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: HVGCCCCGCCCCBB ----CACGCM---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 34 Myc Original Motif Reverse Complement Backward 3 6 0.0399214 Consensus sequence (original motif): VGCACGTGGH Consensus sequence (reverse complement motif): DCCACGTGCV Alignment: DCCACGTGCV --YGCGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 33 Motif name: Mycn Consensus sequence (original motif): HSCACGTGGC Consensus sequence (reverse complement motif): GCCACGTGSD ************************************************************************ Best Matches for Motif ID 33 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 34 Myc Original Motif Original Motif Backward 1 10 0 Consensus sequence (original motif): VGCACGTGGH Consensus sequence (reverse complement motif): DCCACGTGCV Alignment: VGCACGTGGH HSCACGTGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 42 sSGTCACGTGACSs Original Motif Original Motif Backward 3 10 0.0628441 Consensus sequence (original motif): SGGTCACGTGACCS Consensus sequence (reverse complement motif): SGGTCACGTGACCS Alignment: SGGTCACGTGACCS --HSCACGTGGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 35 GABPA Reverse Complement Reverse Complement Forward 1 10 0.0884396 Consensus sequence (original motif): CCGGAAGTGVV Consensus sequence (reverse complement motif): VVCACTTCCGG Alignment: VVCACTTCCGG GCCACGTGSD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 27 Klf4 Original Motif Original Motif Forward 1 10 0.0893272 Consensus sequence (original motif): DGGGYGKGGC Consensus sequence (reverse complement motif): GCCYCMCCCD Alignment: DGGGYGKGGC HSCACGTGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 50 TFF11 Original Motif Original Motif Forward 3 10 0.0895444 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GGMGGRGGCGGVGC --HSCACGTGGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 34 Motif name: Myc Consensus sequence (original motif): VGCACGTGGH Consensus sequence (reverse complement motif): DCCACGTGCV ************************************************************************ Best Matches for Motif ID 34 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 33 Mycn Reverse Complement Reverse Complement Forward 1 10 0 Consensus sequence (original motif): HSCACGTGGC Consensus sequence (reverse complement motif): GCCACGTGSD Alignment: GCCACGTGSD DCCACGTGCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 42 sSGTCACGTGACSs Reverse Complement Original Motif Backward 3 10 0.0646601 Consensus sequence (original motif): SGGTCACGTGACCS Consensus sequence (reverse complement motif): SGGTCACGTGACCS Alignment: SGGTCACGTGACCS --DCCACGTGCV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 35 GABPA Reverse Complement Reverse Complement Backward 2 10 0.0840341 Consensus sequence (original motif): CCGGAAGTGVV Consensus sequence (reverse complement motif): VVCACTTCCGG Alignment: VVCACTTCCGG DCCACGTGCV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 50 TFF11 Original Motif Original Motif Forward 3 10 0.0851555 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GGMGGRGGCGGVGC --VGCACGTGGH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 27 Klf4 Original Motif Original Motif Backward 1 10 0.0883745 Consensus sequence (original motif): DGGGYGKGGC Consensus sequence (reverse complement motif): GCCYCMCCCD Alignment: DGGGYGKGGC VGCACGTGGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 35 Motif name: GABPA Consensus sequence (original motif): CCGGAAGTGVV Consensus sequence (reverse complement motif): VVCACTTCCGG ************************************************************************ Best Matches for Motif ID 35 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 54 TFM12 Reverse Complement Original Motif Forward 5 11 0.0360984 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: CYYCBBCYYYTCCHCCTYYY ----VVCACTTCCGG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 51 TFM2 Original Motif Original Motif Backward 5 11 0.0445566 Consensus sequence (original motif): RGRGGAGRRGGHGGDG Consensus sequence (reverse complement motif): CHCCBCCKMCTCCKCM Alignment: RGRGGAGRRGGHGGDG -CCGGAAGTGVV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 31 Pax5 Reverse Complement Original Motif Backward 3 11 0.0446257 Consensus sequence (original motif): DGVBCABTGDWGCGKRRCSR Consensus sequence (reverse complement motif): MSGKKRCGCWDCABTGBBCD Alignment: DGVBCABTGDWGCGKRRCSR -------VVCACTTCCGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 22 Zfx Reverse Complement Original Motif Backward 4 11 0.0457327 Consensus sequence (original motif): BBVGCCBVGGCCTV Consensus sequence (reverse complement motif): VAGGCCBBGGCVBB Alignment: BBVGCCBVGGCCTV VVCACTTCCGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 40 kcACCTGCAgc Reverse Complement Original Motif Forward 1 11 0.0483841 Consensus sequence (original motif): BCACCTGCABC Consensus sequence (reverse complement motif): GBTGCAGGTGB Alignment: BCACCTGCABC VVCACTTCCGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 36 Motif name: csGCCCCGCCCCsc Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD ************************************************************************ Best Matches for Motif ID 36 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 38 cccGCCCCGCCCCsb Reverse Complement Reverse Complement Forward 1 14 0 Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB Alignment: BBGGGGCGGGGCGGB BBGGGGCGGGGCVD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 7 Motif 7 Original Motif Original Motif Forward 1 14 0.0117332 Consensus sequence (original motif): CSKCCCCGCCCCSY Consensus sequence (reverse complement motif): MSGGGGCGGGGYSG Alignment: CSKCCCCGCCCCSY HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 31 Pax5 Original Motif Reverse Complement Backward 1 14 0.0747029 Consensus sequence (original motif): DGVBCABTGDWGCGKRRCSR Consensus sequence (reverse complement motif): MSGKKRCGCWDCABTGBBCD Alignment: MSGKKRCGCWDCABTGBBCD ------HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 54 TFM12 Original Motif Original Motif Forward 4 14 0.0777991 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: CYYCBBCYYYTCCHCCTYYY ---HVGCCCCGCCCCBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 51 TFM2 Reverse Complement Original Motif Backward 3 14 0.0880609 Consensus sequence (original motif): RGRGGAGRRGGHGGDG Consensus sequence (reverse complement motif): CHCCBCCKMCTCCKCM Alignment: RGRGGAGRRGGHGGDG BBGGGGCGGGGCVD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 37 Motif name: tkAAATAATAtw Consensus sequence (original motif): HDAAATAATAHW Consensus sequence (reverse complement motif): WHTATTATTTDH ************************************************************************ Best Matches for Motif ID 37 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 41 wwAAATAATAtw Original Motif Original Motif Forward 1 12 0 Consensus sequence (original motif): HDAAATAATADD Consensus sequence (reverse complement motif): DDTATTATTTDH Alignment: HDAAATAATADD HDAAATAATAHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 3 Motif 3 Reverse Complement Reverse Complement Backward 2 12 0.0522317 Consensus sequence (original motif): AWAAAWTWAAASWA Consensus sequence (reverse complement motif): TWSTTTWAWTTTWT Alignment: TWSTTTWAWTTTWT -WHTATTATTTDH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 56 TFM11 Reverse Complement Reverse Complement Backward 3 12 0.0590505 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: TWVHWWWYTTTYTTTTTHTTTVWBH -----------WHTATTATTTDH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 52 TFM1 Original Motif Reverse Complement Forward 1 12 0.0637702 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW Alignment: ABAAAAAAWHAAAAARAW HDAAATAATAHW------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 9 Motif 9 Reverse Complement Original Motif Backward 1 12 0.0641975 Consensus sequence (original motif): AATHATATWTHAAA Consensus sequence (reverse complement motif): TTTDAWATATHATT Alignment: AATHATATWTHAAA --WHTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 38 Motif name: cccGCCCCGCCCCsb Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB ************************************************************************ Best Matches for Motif ID 38 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 54 TFM12 Original Motif Original Motif Forward 3 15 0.0773345 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: CYYCBBCYYYTCCHCCTYYY --BCCGCCCCGCCCCBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 51 TFM2 Reverse Complement Original Motif Backward 2 15 0.0869149 Consensus sequence (original motif): RGRGGAGRRGGHGGDG Consensus sequence (reverse complement motif): CHCCBCCKMCTCCKCM Alignment: RGRGGAGRRGGHGGDG BBGGGGCGGGGCGGB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 31 Pax5 Reverse Complement Reverse Complement Forward 1 15 0.0992376 Consensus sequence (original motif): DGVBCABTGDWGCGKRRCSR Consensus sequence (reverse complement motif): MSGKKRCGCWDCABTGBBCD Alignment: MSGKKRCGCWDCABTGBBCD BBGGGGCGGGGCGGB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 36 csGCCCCGCCCCsc Original Motif Original Motif Backward 1 14 0.5 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: -HVGCCCCGCCCCBB BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 7 Motif 7 Original Motif Original Motif Backward 1 14 0.513015 Consensus sequence (original motif): CSKCCCCGCCCCSY Consensus sequence (reverse complement motif): MSGGGGCGGGGYSG Alignment: -CSKCCCCGCCCCSY BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 39 Motif name: kCAGCCAATmr Consensus sequence (original motif): DCAGCCAATVR Consensus sequence (reverse complement motif): MBATTGGCTGH ************************************************************************ Best Matches for Motif ID 39 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 37 tkAAATAATAtw Reverse Complement Reverse Complement Forward 2 11 0.0559269 Consensus sequence (original motif): HDAAATAATAHW Consensus sequence (reverse complement motif): WHTATTATTTDH Alignment: WHTATTATTTDH -MBATTGGCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 44 dhACATTCTkh Original Motif Reverse Complement Backward 1 11 0.0588235 Consensus sequence (original motif): DHACATTCTGH Consensus sequence (reverse complement motif): HCAGAATGTHD Alignment: HCAGAATGTHD DCAGCCAATVR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 41 wwAAATAATAtw Reverse Complement Reverse Complement Backward 1 11 0.0597643 Consensus sequence (original motif): HDAAATAATADD Consensus sequence (reverse complement motif): DDTATTATTTDH Alignment: DDTATTATTTDH -MBATTGGCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 40 kcACCTGCAgc Reverse Complement Original Motif Backward 1 11 0.0599548 Consensus sequence (original motif): BCACCTGCABC Consensus sequence (reverse complement motif): GBTGCAGGTGB Alignment: BCACCTGCABC MBATTGGCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 50 TFF11 Original Motif Reverse Complement Backward 2 11 0.0614719 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GCVCCGCCMCCYCC --DCAGCCAATVR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 40 Motif name: kcACCTGCAgc Consensus sequence (original motif): BCACCTGCABC Consensus sequence (reverse complement motif): GBTGCAGGTGB ************************************************************************ Best Matches for Motif ID 40 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 43 wsTACwGTAsw Original Motif Reverse Complement Backward 1 11 0.0215284 Consensus sequence (original motif): HVTACWGTABD Consensus sequence (reverse complement motif): DBTACWGTAVH Alignment: DBTACWGTAVH BCACCTGCABC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 44 dhACATTCTkh Original Motif Original Motif Backward 1 11 0.0254134 Consensus sequence (original motif): DHACATTCTGH Consensus sequence (reverse complement motif): HCAGAATGTHD Alignment: DHACATTCTGH BCACCTGCABC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 42 sSGTCACGTGACSs Original Motif Original Motif Forward 4 11 0.031338 Consensus sequence (original motif): SGGTCACGTGACCS Consensus sequence (reverse complement motif): SGGTCACGTGACCS Alignment: SGGTCACGTGACCS ---BCACCTGCABC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 50 TFF11 Original Motif Reverse Complement Backward 4 11 0.034471 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GCVCCGCCMCCYCC BCACCTGCABC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 36 csGCCCCGCCCCsc Original Motif Original Motif Backward 3 11 0.0402518 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: HVGCCCCGCCCCBB -BCACCTGCABC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 41 Motif name: wwAAATAATAtw Consensus sequence (original motif): HDAAATAATADD Consensus sequence (reverse complement motif): DDTATTATTTDH ************************************************************************ Best Matches for Motif ID 41 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 37 tkAAATAATAtw Original Motif Original Motif Forward 1 12 0 Consensus sequence (original motif): HDAAATAATAHW Consensus sequence (reverse complement motif): WHTATTATTTDH Alignment: HDAAATAATAHW HDAAATAATADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 3 Motif 3 Original Motif Original Motif Backward 2 12 0.0536028 Consensus sequence (original motif): AWAAAWTWAAASWA Consensus sequence (reverse complement motif): TWSTTTWAWTTTWT Alignment: AWAAAWTWAAASWA -HDAAATAATADD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 52 TFM1 Reverse Complement Original Motif Forward 7 12 0.0565705 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW Alignment: WTKTTTTTHWTTTTTTBT ------DDTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 56 TFM11 Original Motif Original Motif Forward 3 12 0.0575935 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: HDWVAAAHAAAAAMAAAMWWWHBWA --HDAAATAATADD----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 9 Motif 9 Reverse Complement Original Motif Forward 3 12 0.0591821 Consensus sequence (original motif): AATHATATWTHAAA Consensus sequence (reverse complement motif): TTTDAWATATHATT Alignment: AATHATATWTHAAA --DDTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 42 Motif name: sSGTCACGTGACSs Consensus sequence (original motif): SGGTCACGTGACCS Consensus sequence (reverse complement motif): SGGTCACGTGACCS ************************************************************************ Best Matches for Motif ID 42 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 31 Pax5 Original Motif Original Motif Forward 7 14 0.0518737 Consensus sequence (original motif): DGVBCABTGDWGCGKRRCSR Consensus sequence (reverse complement motif): MSGKKRCGCWDCABTGBBCD Alignment: DGVBCABTGDWGCGKRRCSR ------SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 36 csGCCCCGCCCCsc Original Motif Reverse Complement Forward 1 14 0.0539097 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: BBGGGGCGGGGCVD SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 38 cccGCCCCGCCCCsb Reverse Complement Original Motif Forward 1 14 0.0581955 Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB Alignment: BCCGCCCCGCCCCBB SGGTCACGTGACCS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 7 Motif 7 Reverse Complement Reverse Complement Backward 1 14 0.0634135 Consensus sequence (original motif): CSKCCCCGCCCCSY Consensus sequence (reverse complement motif): MSGGGGCGGGGYSG Alignment: MSGGGGCGGGGYSG SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 50 TFF11 Reverse Complement Reverse Complement Backward 3 12 1.05855 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: --GCVCCGCCMCCYCC SGGTCACGTGACCS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 43 Motif name: wsTACwGTAsw Consensus sequence (original motif): HVTACWGTABD Consensus sequence (reverse complement motif): DBTACWGTAVH ************************************************************************ Best Matches for Motif ID 43 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 40 kcACCTGCAgc Original Motif Reverse Complement Forward 1 11 0.0199592 Consensus sequence (original motif): BCACCTGCABC Consensus sequence (reverse complement motif): GBTGCAGGTGB Alignment: GBTGCAGGTGB HVTACWGTABD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 41 wwAAATAATAtw Original Motif Reverse Complement Forward 2 11 0.0309343 Consensus sequence (original motif): HDAAATAATADD Consensus sequence (reverse complement motif): DDTATTATTTDH Alignment: DDTATTATTTDH -HVTACWGTABD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 37 tkAAATAATAtw Reverse Complement Original Motif Forward 1 11 0.0337121 Consensus sequence (original motif): HDAAATAATAHW Consensus sequence (reverse complement motif): WHTATTATTTDH Alignment: HDAAATAATAHW DBTACWGTAVH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 6 Motif 6 Original Motif Original Motif Backward 4 11 0.0353535 Consensus sequence (original motif): AATTYDGAARTAWW Consensus sequence (reverse complement motif): WWTAKTTCDKAATT Alignment: AATTYDGAARTAWW HVTACWGTABD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 45 wbgTAAATAww Reverse Complement Original Motif Backward 1 11 0.037518 Consensus sequence (original motif): DBGTAAATAHD Consensus sequence (reverse complement motif): DHTATTTACBD Alignment: DBGTAAATAHD DBTACWGTAVH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 44 Motif name: dhACATTCTkh Consensus sequence (original motif): DHACATTCTGH Consensus sequence (reverse complement motif): HCAGAATGTHD ************************************************************************ Best Matches for Motif ID 44 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 53 TFM3 Original Motif Reverse Complement Backward 8 11 0.0217516 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW Alignment: TWAAWTTVTGAAAAAHWW DHACATTCTGH------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 40 kcACCTGCAgc Original Motif Original Motif Backward 1 11 0.0238442 Consensus sequence (original motif): BCACCTGCABC Consensus sequence (reverse complement motif): GBTGCAGGTGB Alignment: BCACCTGCABC DHACATTCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 16 Motif 16 Reverse Complement Reverse Complement Forward 1 11 0.0258838 Consensus sequence (original motif): ACAAWTRATTTTGA Consensus sequence (reverse complement motif): TCAAAATKAWTTGT Alignment: TCAAAATKAWTTGT HCAGAATGTHD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 41 wwAAATAATAtw Reverse Complement Reverse Complement Backward 1 11 0.0292508 Consensus sequence (original motif): HDAAATAATADD Consensus sequence (reverse complement motif): DDTATTATTTDH Alignment: DDTATTATTTDH -HCAGAATGTHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 56 TFM11 Original Motif Reverse Complement Backward 11 11 0.0307858 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: TWVHWWWYTTTYTTTTTHTTTVWBH ----DHACATTCTGH---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 45 Motif name: wbgTAAATAww Consensus sequence (original motif): DBGTAAATAHD Consensus sequence (reverse complement motif): DHTATTTACBD ************************************************************************ Best Matches for Motif ID 45 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 37 tkAAATAATAtw Original Motif Original Motif Backward 1 11 0.0162338 Consensus sequence (original motif): HDAAATAATAHW Consensus sequence (reverse complement motif): WHTATTATTTDH Alignment: HDAAATAATAHW -DBGTAAATAHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 41 wwAAATAATAtw Reverse Complement Reverse Complement Backward 2 11 0.0164863 Consensus sequence (original motif): HDAAATAATADD Consensus sequence (reverse complement motif): DDTATTATTTDH Alignment: DDTATTATTTDH DHTATTTACBD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 56 TFM11 Reverse Complement Reverse Complement Forward 15 11 0.0192768 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: TWVHWWWYTTTYTTTTTHTTTVWBH --------------DHTATTTACBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 9 Motif 9 Reverse Complement Original Motif Backward 4 11 0.0250541 Consensus sequence (original motif): AATHATATWTHAAA Consensus sequence (reverse complement motif): TTTDAWATATHATT Alignment: AATHATATWTHAAA DHTATTTACBD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 6 Motif 6 Original Motif Original Motif Backward 1 11 0.027895 Consensus sequence (original motif): AATTYDGAARTAWW Consensus sequence (reverse complement motif): WWTAKTTCDKAATT Alignment: AATTYDGAARTAWW ---DBGTAAATAHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 46 Motif name: TFW1 Consensus sequence (original motif): GTCGCG Consensus sequence (reverse complement motif): CGCGAC ************************************************************************ Best Matches for Motif ID 46 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 48 TFW3 Original Motif Original Motif Backward 1 6 0.0350356 Consensus sequence (original motif): CGGCYBCGCG Consensus sequence (reverse complement motif): CGCGBMGCCG Alignment: CGGCYBCGCG ----GTCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 42 sSGTCACGTGACSs Original Motif Original Motif Forward 3 6 0.0375102 Consensus sequence (original motif): SGGTCACGTGACCS Consensus sequence (reverse complement motif): SGGTCACGTGACCS Alignment: SGGTCACGTGACCS --GTCGCG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 50 TFF11 Reverse Complement Reverse Complement Backward 5 6 0.0381641 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GCVCCGCCMCCYCC ----CGCGAC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 49 TFF1 Reverse Complement Original Motif Forward 7 6 0.0431161 Consensus sequence (original motif): CGGVGCCGCVGC Consensus sequence (reverse complement motif): GCVGCGGCBCCG Alignment: CGGVGCCGCVGC ------CGCGAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 47 TFW2 Reverse Complement Reverse Complement Backward 2 6 0.052047 Consensus sequence (original motif): SCGCGCGG Consensus sequence (reverse complement motif): CCGCGCGS Alignment: CCGCGCGS -CGCGAC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 47 Motif name: TFW2 Consensus sequence (original motif): SCGCGCGG Consensus sequence (reverse complement motif): CCGCGCGS ************************************************************************ Best Matches for Motif ID 47 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 36 csGCCCCGCCCCsc Reverse Complement Original Motif Forward 2 8 0.0456233 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: HVGCCCCGCCCCBB -CCGCGCGS----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 38 cccGCCCCGCCCCsb Original Motif Reverse Complement Forward 7 8 0.045686 Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB Alignment: BBGGGGCGGGGCGGB ------SCGCGCGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 7 Motif 7 Reverse Complement Original Motif Backward 6 8 0.0504058 Consensus sequence (original motif): CSKCCCCGCCCCSY Consensus sequence (reverse complement motif): MSGGGGCGGGGYSG Alignment: CSKCCCCGCCCCSY -CCGCGCGS----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 33 Mycn Original Motif Original Motif Forward 2 8 0.0527532 Consensus sequence (original motif): HSCACGTGGC Consensus sequence (reverse complement motif): GCCACGTGSD Alignment: HSCACGTGGC -SCGCGCGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 34 Myc Original Motif Original Motif Backward 2 8 0.0574543 Consensus sequence (original motif): VGCACGTGGH Consensus sequence (reverse complement motif): DCCACGTGCV Alignment: VGCACGTGGH -SCGCGCGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 48 Motif name: TFW3 Consensus sequence (original motif): CGGCYBCGCG Consensus sequence (reverse complement motif): CGCGBMGCCG ************************************************************************ Best Matches for Motif ID 48 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 49 TFF1 Original Motif Original Motif Backward 3 10 0.0623879 Consensus sequence (original motif): CGGVGCCGCVGC Consensus sequence (reverse complement motif): GCVGCGGCBCCG Alignment: CGGVGCCGCVGC CGGCYBCGCG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 23 Egr1 Original Motif Reverse Complement Backward 2 10 0.0630189 Consensus sequence (original motif): HGCGTGGGCGK Consensus sequence (reverse complement motif): YCGCCCACGCH Alignment: YCGCCCACGCH CGGCYBCGCG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 50 TFF11 Reverse Complement Original Motif Forward 1 10 0.0645308 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GGMGGRGGCGGVGC CGCGBMGCCG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 31 Pax5 Original Motif Reverse Complement Forward 11 10 0.0714355 Consensus sequence (original motif): DGVBCABTGDWGCGKRRCSR Consensus sequence (reverse complement motif): MSGKKRCGCWDCABTGBBCD Alignment: MSGKKRCGCWDCABTGBBCD ----------CGGCYBCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 7 Motif 7 Original Motif Original Motif Forward 1 10 0.0717594 Consensus sequence (original motif): CSKCCCCGCCCCSY Consensus sequence (reverse complement motif): MSGGGGCGGGGYSG Alignment: CSKCCCCGCCCCSY CGGCYBCGCG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 49 Motif name: TFF1 Consensus sequence (original motif): CGGVGCCGCVGC Consensus sequence (reverse complement motif): GCVGCGGCBCCG ************************************************************************ Best Matches for Motif ID 49 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 50 TFF11 Original Motif Original Motif Backward 1 12 0.0292081 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC Alignment: GGMGGRGGCGGVGC --CGGVGCCGCVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 36 csGCCCCGCCCCsc Original Motif Original Motif Forward 1 12 0.0542674 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: HVGCCCCGCCCCBB CGGVGCCGCVGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 54 TFM12 Original Motif Reverse Complement Backward 3 12 0.0543272 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: KKKAGGDGGAKKMGBBGKMG ------CGGVGCCGCVGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 38 cccGCCCCGCCCCsb Original Motif Reverse Complement Forward 4 12 0.0548371 Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB Alignment: BBGGGGCGGGGCGGB ---CGGVGCCGCVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 31 Pax5 Reverse Complement Original Motif Forward 1 12 0.0556962 Consensus sequence (original motif): DGVBCABTGDWGCGKRRCSR Consensus sequence (reverse complement motif): MSGKKRCGCWDCABTGBBCD Alignment: DGVBCABTGDWGCGKRRCSR GCVGCGGCBCCG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 50 Motif name: TFF11 Consensus sequence (original motif): GGMGGRGGCGGVGC Consensus sequence (reverse complement motif): GCVCCGCCMCCYCC ************************************************************************ Best Matches for Motif ID 50 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 51 TFM2 Original Motif Original Motif Forward 1 14 0.033716 Consensus sequence (original motif): RGRGGAGRRGGHGGDG Consensus sequence (reverse complement motif): CHCCBCCKMCTCCKCM Alignment: RGRGGAGRRGGHGGDG GGMGGRGGCGGVGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 54 TFM12 Reverse Complement Original Motif Forward 6 14 0.0386905 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: CYYCBBCYYYTCCHCCTYYY -----GCVCCGCCMCCYCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 38 cccGCCCCGCCCCsb Original Motif Reverse Complement Backward 2 14 0.0548198 Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB Alignment: BBGGGGCGGGGCGGB GGMGGRGGCGGVGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 31 Pax5 Original Motif Original Motif Backward 3 14 0.0573129 Consensus sequence (original motif): DGVBCABTGDWGCGKRRCSR Consensus sequence (reverse complement motif): MSGKKRCGCWDCABTGBBCD Alignment: DGVBCABTGDWGCGKRRCSR ----GGMGGRGGCGGVGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 36 csGCCCCGCCCCsc Original Motif Reverse Complement Forward 1 14 0.0652173 Consensus sequence (original motif): HVGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCVD Alignment: BBGGGGCGGGGCVD GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 51 Motif name: TFM2 Consensus sequence (original motif): RGRGGAGRRGGHGGDG Consensus sequence (reverse complement motif): CHCCBCCKMCTCCKCM ************************************************************************ Best Matches for Motif ID 51 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 54 TFM12 Reverse Complement Original Motif Forward 1 16 0.0331473 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: CYYCBBCYYYTCCHCCTYYY CHCCBCCKMCTCCKCM---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 31 Pax5 Original Motif Original Motif Forward 2 16 0.0668155 Consensus sequence (original motif): DGVBCABTGDWGCGKRRCSR Consensus sequence (reverse complement motif): MSGKKRCGCWDCABTGBBCD Alignment: DGVBCABTGDWGCGKRRCSR -RGRGGAGRRGGHGGDG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 56 TFM11 Original Motif Original Motif Forward 8 16 0.0794752 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: HDWVAAAHAAAAAMAAAMWWWHBWA -------RGRGGAGRRGGHGGDG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 38 cccGCCCCGCCCCsb Reverse Complement Original Motif Forward 1 15 0.558405 Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB Alignment: BCCGCCCCGCCCCBB- CHCCBCCKMCTCCKCM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 2 Motif 2 Original Motif Original Motif Backward 1 14 1.01195 Consensus sequence (original motif): RGRAGARRGARRAR Consensus sequence (reverse complement motif): MTMMTCMMTCTKCK Alignment: --RGRAGARRGARRAR RGRGGAGRRGGHGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 52 Motif name: TFM1 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW ************************************************************************ Best Matches for Motif ID 52 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 56 TFM11 Original Motif Reverse Complement Forward 6 18 0 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: TWVHWWWYTTTYTTTTTHTTTVWBH -----WTKTTTTTHWTTTTTTBT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 55 TFM13 Reverse Complement Original Motif Backward 3 18 0.0364672 Consensus sequence (original motif): ATKAAWTTTTRMAABAHHTW Consensus sequence (reverse complement motif): WAHHTVTTYKAAAAWTTRAT Alignment: ATKAAWTTTTRMAABAHHTW ABAAAAAAWHAAAAARAW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 53 TFM3 Original Motif Original Motif Backward 1 18 0.0456974 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW Alignment: WWHTTTTTCABAAWTTWA WTKTTTTTHWTTTTTTBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 54 TFM12 Original Motif Original Motif Forward 4 17 0.572783 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: CYYCBBCYYYTCCHCCTYYY- ---WTKTTTTTHWTTTTTTBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 31 Pax5 Original Motif Reverse Complement Backward 5 16 1.07322 Consensus sequence (original motif): DGVBCABTGDWGCGKRRCSR Consensus sequence (reverse complement motif): MSGKKRCGCWDCABTGBBCD Alignment: --MSGKKRCGCWDCABTGBBCD WTKTTTTTHWTTTTTTBT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 53 Motif name: TFM3 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW ************************************************************************ Best Matches for Motif ID 53 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 55 TFM13 Reverse Complement Original Motif Forward 2 18 0.013876 Consensus sequence (original motif): ATKAAWTTTTRMAABAHHTW Consensus sequence (reverse complement motif): WAHHTVTTYKAAAAWTTRAT Alignment: ATKAAWTTTTRMAABAHHTW -TWAAWTTVTGAAAAAHWW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 56 TFM11 Original Motif Reverse Complement Forward 5 18 0.0402327 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: TWVHWWWYTTTYTTTTTHTTTVWBH ----WWHTTTTTCABAAWTTWA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 52 TFM1 Original Motif Original Motif Backward 1 18 0.0432207 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW Alignment: WTKTTTTTHWTTTTTTBT WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 31 Pax5 Original Motif Reverse Complement Backward 4 17 0.561883 Consensus sequence (original motif): DGVBCABTGDWGCGKRRCSR Consensus sequence (reverse complement motif): MSGKKRCGCWDCABTGBBCD Alignment: -MSGKKRCGCWDCABTGBBCD WWHTTTTTCABAAWTTWA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 3 Motif 3 Original Motif Reverse Complement Backward 1 14 2.04564 Consensus sequence (original motif): AWAAAWTWAAASWA Consensus sequence (reverse complement motif): TWSTTTWAWTTTWT Alignment: ----TWSTTTWAWTTTWT WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 54 Motif name: TFM12 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG ************************************************************************ Best Matches for Motif ID 54 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 31 Pax5 Original Motif Reverse Complement Forward 1 20 0.0458155 Consensus sequence (original motif): DGVBCABTGDWGCGKRRCSR Consensus sequence (reverse complement motif): MSGKKRCGCWDCABTGBBCD Alignment: MSGKKRCGCWDCABTGBBCD CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 56 TFM11 Original Motif Reverse Complement Backward 6 20 0.0573204 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: TWVHWWWYTTTYTTTTTHTTTVWBH CYYCBBCYYYTCCHCCTYYY----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 52 TFM1 Original Motif Original Motif Backward 2 17 1.56255 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW Alignment: ---WTKTTTTTHWTTTTTTBT CYYCBBCYYYTCCHCCTYYY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 51 TFM2 Reverse Complement Original Motif Forward 1 16 2.01568 Consensus sequence (original motif): RGRGGAGRRGGHGGDG Consensus sequence (reverse complement motif): CHCCBCCKMCTCCKCM Alignment: RGRGGAGRRGGHGGDG---- KKKAGGDGGAKKMGBBGKMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 38 cccGCCCCGCCCCsb Original Motif Original Motif Backward 1 15 2.55221 Consensus sequence (original motif): BCCGCCCCGCCCCBB Consensus sequence (reverse complement motif): BBGGGGCGGGGCGGB Alignment: -----BCCGCCCCGCCCCBB CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 55 Motif name: TFM13 Consensus sequence (original motif): ATKAAWTTTTRMAABAHHTW Consensus sequence (reverse complement motif): WAHHTVTTYKAAAAWTTRAT ************************************************************************ Best Matches for Motif ID 55 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 56 TFM11 Reverse Complement Reverse Complement Forward 5 20 0.0352451 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: TWVHWWWYTTTYTTTTTHTTTVWBH ----WAHHTVTTYKAAAAWTTRAT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 53 TFM3 Original Motif Reverse Complement Forward 1 18 1.02254 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW Alignment: TWAAWTTVTGAAAAAHWW-- ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 52 TFM1 Reverse Complement Original Motif Forward 1 18 1.02868 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW Alignment: WTKTTTTTHWTTTTTTBT-- WAHHTVTTYKAAAAWTTRAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 31 Pax5 Reverse Complement Reverse Complement Backward 6 15 2.56565 Consensus sequence (original motif): DGVBCABTGDWGCGKRRCSR Consensus sequence (reverse complement motif): MSGKKRCGCWDCABTGBBCD Alignment: -----MSGKKRCGCWDCABTGBBCD WAHHTVTTYKAAAAWTTRAT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 9 Motif 9 Reverse Complement Reverse Complement Backward 1 14 3.02278 Consensus sequence (original motif): AATHATATWTHAAA Consensus sequence (reverse complement motif): TTTDAWATATHATT Alignment: ------TTTDAWATATHATT WAHHTVTTYKAAAAWTTRAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 56 Motif name: TFM11 Consensus sequence (original motif): HDWVAAAHAAAAAMAAAMWWWHBWA Consensus sequence (reverse complement motif): TWVHWWWYTTTYTTTTTHTTTVWBH ************************************************************************ Best Matches for Motif ID 56 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 55 TFM13 Reverse Complement Reverse Complement Forward 1 20 0.0486765 Consensus sequence (original motif): ATKAAWTTTTRMAABAHHTW Consensus sequence (reverse complement motif): WAHHTVTTYKAAAAWTTRAT Alignment: WAHHTVTTYKAAAAWTTRAT----- TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 54 TFM12 Original Motif Reverse Complement Forward 1 20 0.0693284 Consensus sequence (original motif): CYYCBBCYYYTCCHCCTYYY Consensus sequence (reverse complement motif): KKKAGGDGGAKKMGBBGKMG Alignment: KKKAGGDGGAKKMGBBGKMG----- HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 31 Pax5 Original Motif Original Motif Forward 1 20 0.0750613 Consensus sequence (original motif): DGVBCABTGDWGCGKRRCSR Consensus sequence (reverse complement motif): MSGKKRCGCWDCABTGBBCD Alignment: DGVBCABTGDWGCGKRRCSR----- HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 52 TFM1 Original Motif Reverse Complement Backward 1 18 1.0232 Consensus sequence (original motif): WTKTTTTTHWTTTTTTBT Consensus sequence (reverse complement motif): ABAAAAAAWHAAAAARAW Alignment: -------ABAAAAAAWHAAAAARAW HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 53 TFM3 Reverse Complement Original Motif Forward 1 18 1.05388 Consensus sequence (original motif): WWHTTTTTCABAAWTTWA Consensus sequence (reverse complement motif): TWAAWTTVTGAAAAAHWW Alignment: WWHTTTTTCABAAWTTWA------- TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 08-29-2022 00:31:53 Runtime: 358.862 seconds MOTIFSIM is written by Ngoc Tam L. Tran