Version 2.2
Number of files: | 5 |
Number of top significant motifs: | 5 |
Number of best matches: | 5 |
Similarity cutoff >= | 0.75 |
Matching motif database: | UniProbe Mus Musculus |
Motif tree: | Yes |
Combined similar motifs: | Yes |
Output file type: | All |
Output file format: | All |
File name | Count of motifs | Dataset number |
DREME_DM230.txt | 1 | 1 |
MEME_DM230.txt | 20 | 2 |
PScanChIP_DM230.txt | 14 | 3 |
RSAT_peak-motifs_DM230.txt | 10 | 4 |
W-ChIPMotifs_DM230.txt | 11 | 5 |
Dataset #: 1 | Motif ID: 1 | Motif name: Motif 1 |
Original motif | Reverse complement motif |
Consensus sequence: GGCGGGGC | Consensus sequence: GCCCCGCC |
Best Matches for Motif ID 1 (Highest to Lowest)
Motif ID: | UP00093 |
Motif name: | Klf7_primary |
Species: | Mus musculus |
Matching format of first motif: | Reverse Complement |
Matching format of second motif: | Original Motif |
Direction: | Backward |
Position number: | 6 |
Number of overlap: | 8 |
Similarity score: | 0 |
Original motif | Reverse complement motif |
Consensus sequence: HBDRCCMCGCCCHHHD | Consensus sequence: DHHDGGGCGRGGKHBH |
Motif ID: | UP00000 |
Motif name: | Smad3_secondary |
Species: | Mus musculus |
Matching format of first motif: | Original Motif |
Matching format of second motif: | Reverse Complement |
Direction: | Forward |
Position number: | 7 |
Number of overlap: | 8 |
Similarity score: | 0.00617043 |
Original motif | Reverse complement motif |
Consensus sequence: DHHBCCCCGCCAHHBHB | Consensus sequence: BHBHDTGGCGGGGBDHD |
Motif ID: | UP00002 |
Motif name: | Sp4_secondary |
Species: | Mus musculus |
Matching format of first motif: | Original Motif |
Matching format of second motif: | Original Motif |
Direction: | Forward |
Position number: | 5 |
Number of overlap: | 8 |
Similarity score: | 0.0145996 |
Original motif | Reverse complement motif |
Consensus sequence: BDWAGGCGTGBCHHD | Consensus sequence: HHDGBCACGCCTWDB |
Motif ID: | UP00002 |
Motif name: | Sp4_primary |
Species: | Mus musculus |
Matching format of first motif: | Reverse Complement |
Matching format of second motif: | Original Motif |
Direction: | Forward |
Position number: | 2 |
Number of overlap: | 8 |
Similarity score: | 0.0233506 |
Original motif | Reverse complement motif |
Consensus sequence: BDHHMCGCCCCCTHVBB | Consensus sequence: BVVHAGGGGGCGRDHHB |
Motif ID: | UP00024 |
Motif name: | Glis2_primary |
Species: | Mus musculus |
Matching format of first motif: | Reverse Complement |
Matching format of second motif: | Original Motif |
Direction: | Forward |
Position number: | 5 |
Number of overlap: | 8 |
Similarity score: | 0.0291232 |
Original motif | Reverse complement motif |
Consensus sequence: HHHVGACCCCCCVBRD | Consensus sequence: HKBBGGGGGGTCVHHH |
Dataset #: 3 | Motif ID: 24 | Motif name: SP1 |
Original motif | Reverse complement motif |
Consensus sequence: CCCCKCCCCC | Consensus sequence: GGGGGYGGGG |
Best Matches for Motif ID 24 (Highest to Lowest)
Motif ID: | UP00021 |
Motif name: | Zfp281_primary |
Species: | Mus musculus |
Matching format of first motif: | Original Motif |
Matching format of second motif: | Original Motif |
Direction: | Backward |
Position number: | 4 |
Number of overlap: | 10 |
Similarity score: | 0.0231018 |
Original motif | Reverse complement motif |
Consensus sequence: DBCCCCCCCCCCMYC | Consensus sequence: GKRGGGGGGGGGGBD |
Motif ID: | UP00093 |
Motif name: | Klf7_primary |
Species: | Mus musculus |
Matching format of first motif: | Original Motif |
Matching format of second motif: | Original Motif |
Direction: | Backward |
Position number: | 3 |
Number of overlap: | 10 |
Similarity score: | 0.0303207 |
Original motif | Reverse complement motif |
Consensus sequence: HBDRCCMCGCCCHHHD | Consensus sequence: DHHDGGGCGRGGKHBH |
Motif ID: | UP00033 |
Motif name: | Zfp410_secondary |
Species: | Mus musculus |
Matching format of first motif: | Reverse Complement |
Matching format of second motif: | Reverse Complement |
Direction: | Forward |
Position number: | 5 |
Number of overlap: | 10 |
Similarity score: | 0.0323007 |
Original motif | Reverse complement motif |
Consensus sequence: BHHBHCCGCCCCDHHHH | Consensus sequence: HHHHDGGGGCGGDBHDV |
Motif ID: | UP00099 |
Motif name: | Ascl2_secondary |
Species: | Mus musculus |
Matching format of first motif: | Reverse Complement |
Matching format of second motif: | Reverse Complement |
Direction: | Forward |
Position number: | 3 |
Number of overlap: | 10 |
Similarity score: | 0.0340973 |
Original motif | Reverse complement motif |
Consensus sequence: BHVDCCCCDCCCBDBH | Consensus sequence: HVDVGGGHGGGGDBHB |
Motif ID: | UP00043 |
Motif name: | Bcl6b_secondary |
Species: | Mus musculus |
Matching format of first motif: | Reverse Complement |
Matching format of second motif: | Reverse Complement |
Direction: | Backward |
Position number: | 3 |
Number of overlap: | 10 |
Similarity score: | 0.0351051 |
Original motif | Reverse complement motif |
Consensus sequence: HBBBCCGCCCCWHHHV | Consensus sequence: BHHHWGGGGCGGBBVH |
Dataset #: 3 | Motif ID: 27 | Motif name: Klf4 |
Original motif | Reverse complement motif |
Consensus sequence: DGGGYGKGGC | Consensus sequence: GCCYCMCCCD |
Best Matches for Motif ID 27 (Highest to Lowest)
Motif ID: | UP00093 |
Motif name: | Klf7_primary |
Species: | Mus musculus |
Matching format of first motif: | Original Motif |
Matching format of second motif: | Reverse Complement |
Direction: | Forward |
Position number: | 4 |
Number of overlap: | 10 |
Similarity score: | 0 |
Original motif | Reverse complement motif |
Consensus sequence: HBDRCCMCGCCCHHHD | Consensus sequence: DHHDGGGCGRGGKHBH |
Motif ID: | UP00021 |
Motif name: | Zfp281_primary |
Species: | Mus musculus |
Matching format of first motif: | Reverse Complement |
Matching format of second motif: | Original Motif |
Direction: | Forward |
Position number: | 4 |
Number of overlap: | 10 |
Similarity score: | 0.0153308 |
Original motif | Reverse complement motif |
Consensus sequence: DBCCCCCCCCCCMYC | Consensus sequence: GKRGGGGGGGGGGBD |
Motif ID: | UP00002 |
Motif name: | Sp4_secondary |
Species: | Mus musculus |
Matching format of first motif: | Original Motif |
Matching format of second motif: | Original Motif |
Direction: | Forward |
Position number: | 3 |
Number of overlap: | 10 |
Similarity score: | 0.0186791 |
Original motif | Reverse complement motif |
Consensus sequence: BDWAGGCGTGBCHHD | Consensus sequence: HHDGBCACGCCTWDB |
Motif ID: | UP00022 |
Motif name: | Zfp740_primary |
Species: | Mus musculus |
Matching format of first motif: | Reverse Complement |
Matching format of second motif: | Original Motif |
Direction: | Forward |
Position number: | 3 |
Number of overlap: | 10 |
Similarity score: | 0.0218399 |
Original motif | Reverse complement motif |
Consensus sequence: HVBCCCCCCCCMHHHB | Consensus sequence: BHHDYGGGGGGGGBVD |
Motif ID: | UP00007 |
Motif name: | Egr1_primary |
Species: | Mus musculus |
Matching format of first motif: | Reverse Complement |
Matching format of second motif: | Original Motif |
Direction: | Forward |
Position number: | 1 |
Number of overlap: | 10 |
Similarity score: | 0.0249586 |
Original motif | Reverse complement motif |
Consensus sequence: HCCGCCCCCGCAHB | Consensus sequence: VHTGCGGGGGCGGH |
Dataset #: 4 | Motif ID: 44 | Motif name: dhACATTCTkh |
Original motif | Reverse complement motif |
Consensus sequence: DHACATTCTGH | Consensus sequence: HCAGAATGTHD |
Best Matches for Motif ID 44 (Highest to Lowest)
Motif ID: | UP00038 |
Motif name: | Spdef_secondary |
Species: | Mus musculus |
Matching format of first motif: | Reverse Complement |
Matching format of second motif: | Reverse Complement |
Direction: | Forward |
Position number: | 4 |
Number of overlap: | 11 |
Similarity score: | 0.00581553 |
Original motif | Reverse complement motif |
Consensus sequence: DDBHACATCCTAKWDV | Consensus sequence: VDWYTAGGATGTHVDH |
Motif ID: | UP00528 |
Motif name: | Foxm1_secondary |
Species: | Mus musculus |
Matching format of first motif: | Original Motif |
Matching format of second motif: | Reverse Complement |
Direction: | Forward |
Position number: | 8 |
Number of overlap: | 11 |
Similarity score: | 0.00582895 |
Original motif | Reverse complement motif |
Consensus sequence: MWSMBAARRATGCDCABHATGD | Consensus sequence: DCATDBTGHGCATKMTTBRSWR |
Motif ID: | UP00023 |
Motif name: | Sox30_primary |
Species: | Mus musculus |
Matching format of first motif: | Original Motif |
Matching format of second motif: | Reverse Complement |
Direction: | Backward |
Position number: | 4 |
Number of overlap: | 11 |
Similarity score: | 0.00613057 |
Original motif | Reverse complement motif |
Consensus sequence: DHDBAACAATDRHHHH | Consensus sequence: HHHHMHATTGTTBDHD |
Motif ID: | UP00034 |
Motif name: | Sox7_primary |
Species: | Mus musculus |
Matching format of first motif: | Original Motif |
Matching format of second motif: | Reverse Complement |
Direction: | Forward |
Position number: | 6 |
Number of overlap: | 11 |
Similarity score: | 0.0119275 |
Original motif | Reverse complement motif |
Consensus sequence: HHBDHDDAACAATDRHHHHHBW | Consensus sequence: WBHHHHHMDATTGTTHDHDVHH |
Motif ID: | UP00030 |
Motif name: | Sox11_primary |
Species: | Mus musculus |
Matching format of first motif: | Original Motif |
Matching format of second motif: | Reverse Complement |
Direction: | Forward |
Position number: | 3 |
Number of overlap: | 11 |
Similarity score: | 0.0122803 |
Original motif | Reverse complement motif |
Consensus sequence: HBDDRAACAAAGRABHH | Consensus sequence: HHBTMCTTTGTTMDDVH |
Dataset #: 4 | Motif ID: 45 | Motif name: wbgTAAATAww |
Original motif | Reverse complement motif |
Consensus sequence: DBGTAAATAHD | Consensus sequence: DHTATTTACBD |
Best Matches for Motif ID 45 (Highest to Lowest)
Motif ID: | UP00242 |
Motif name: | Hoxc8 |
Species: | Mus musculus |
Matching format of first motif: | Reverse Complement |
Matching format of second motif: | Reverse Complement |
Direction: | Forward |
Position number: | 3 |
Number of overlap: | 11 |
Similarity score: | 0 |
Original motif | Reverse complement motif |
Consensus sequence: BHDDDGTAATTAHHDT | Consensus sequence: AHDHTAATTACHHHHV |
Motif ID: | UP00073 |
Motif name: | Foxa2_primary |
Species: | Mus musculus |
Matching format of first motif: | Original Motif |
Matching format of second motif: | Original Motif |
Direction: | Backward |
Position number: | 4 |
Number of overlap: | 11 |
Similarity score: | 0.00453517 |
Original motif | Reverse complement motif |
Consensus sequence: HHWAWGTAAAYAAAVDB | Consensus sequence: BDVTTTKTTTACWTWHH |
Motif ID: | UP00039 |
Motif name: | Foxj3_primary |
Species: | Mus musculus |
Matching format of first motif: | Original Motif |
Matching format of second motif: | Original Motif |
Direction: | Forward |
Position number: | 4 |
Number of overlap: | 11 |
Similarity score: | 0.00490457 |
Original motif | Reverse complement motif |
Consensus sequence: HDHADGTAAACAAAVVH | Consensus sequence: DVVTTTGTTTACDTHDH |
Motif ID: | UP00041 |
Motif name: | Foxj1_primary |
Species: | Mus musculus |
Matching format of first motif: | Original Motif |
Matching format of second motif: | Original Motif |
Direction: | Backward |
Position number: | 5 |
Number of overlap: | 11 |
Similarity score: | 0.00656547 |
Original motif | Reverse complement motif |
Consensus sequence: HDHRTAAACAAAHDDD | Consensus sequence: DDDHTTTGTTTAMHDH |
Motif ID: | UP00182 |
Motif name: | Hoxa6 |
Species: | Mus musculus |
Matching format of first motif: | Original Motif |
Matching format of second motif: | Reverse Complement |
Direction: | Backward |
Position number: | 3 |
Number of overlap: | 11 |
Similarity score: | 0.0086354 |
Original motif | Reverse complement motif |
Consensus sequence: AMGKTAATTACCHHAD | Consensus sequence: DTHHGGTAATTAYCYT |
Results created by MOTIFSIM on 11-14-2022 18:30:07
Runtime: 350.348 seconds
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