**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 5 Number of top significant motifs: 5 Number of best matches: 5 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Motif tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # DREME_DM230.txt 1 1 MEME_DM230.txt 20 2 PScanChIP_DM230.txt 14 3 RSAT_peak-motifs_DM230.txt 10 4 W-ChIPMotifs_DM230.txt 11 5 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 24 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 Motif 7 Original Motif Original Motif CCCCKCCCCC CSKCCCCGCCCCSY YCCCCGCCCCCCSK Direction: Backward Position #: 2 Overlap #: 10 Alignment: ---CCCCKCCCCC- CSKCCCCGCCCCSY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Reverse Complement Reverse Complement YSGGGGGGCGGGGM BBGGGGCGGGGCVD YSGGGGGGSGGSGGGGCVD Direction: Forward Position #: 6 Overlap #: 9 Alignment: YSGGGGGGCGGGGM----- -----BBGGGGCGGGGCVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Reverse Complement YSGGGGGGSGGSGGGGCVD BBGGGGCGGGGCGGB YSGGGGGGSGGGGCGGSGCGGB Direction: Forward Position #: 8 Overlap #: 12 Alignment: YSGGGGGGSGGSGGGGCVD--- -------BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Original Motif YSGGGGGGSGGGGCGGSGCGGB GGMGGRGGCGGVGC YSGGGGGGSGGVGSGGGSGGVGC Direction: Forward Position #: 10 Overlap #: 13 Alignment: YSGGGGGGSGGGGCGGSGCGGB- ---------GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif GCVCCSCCCSCVCCSCCCCCCSK CYYCBBCYYYTCCHCCTYYY GCVCCSCCCCCBCCBCYYCBCCBCCTYYY Direction: Forward Position #: 10 Overlap #: 14 Alignment: GCVCCSCCCSCVCCSCCCCCCSK------ ---------CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 21 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 21 Motif 15 Reverse Complement Reverse Complement TTTTAT TTTTATTGTYAT TTTTATTGTYAT Direction: Forward Position #: 1 Overlap #: 6 Alignment: TTTTAT------ TTTTATTGTYAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Original Motif Original Motif TTTTATTGTYAT AWTAAATAYAATTT AWTAAWTWTAWTKTYAT Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----TTTTATTGTYAT AWTAAATAYAATTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Reverse Complement Original Motif ATKAYAWTAWAWTTAWT AAATRWTAAAATCA ATKAYAAWATAWTWAAWTCA Direction: Forward Position #: 7 Overlap #: 11 Alignment: ATKAYAWTAWAWTTAWT--- ------AAATRWTAAAATCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Original Motif Original Motif ATKAYAAWATAWTWAAWTCA ATTTWATGAAA ATTWHAWDAWAWTWAAWTCA Direction: Forward Position #: 1 Overlap #: 11 Alignment: ATKAYAAWATAWTWAAWTCA ATTTWATGAAA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 10 Reverse Complement Original Motif TGAWTTWAWTWTHWTHWAAT TTTCATAAWT TKWHWTAAWTWTHWTHWAAT Direction: Forward Position #: 1 Overlap #: 10 Alignment: TGAWTTWAWTWTHWTHWAAT TTTCATAAWT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 45 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww tkAAATAATAtw Original Motif Original Motif DBGTAAATAHD HDAAATAATAHW DHRWWAATAHDH Direction: Backward Position #: 1 Overlap #: 11 Alignment: -DBGTAAATAHD HDAAATAATAHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Original Motif Original Motif DHRWWAATAHDH HDAAATAATADD DHRWWAAWATAWTADD Direction: Forward Position #: 5 Overlap #: 8 Alignment: DHRWWAATAHDH---- ----HDAAATAATADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Original Motif Original Motif DHRWWAAWATAWTADD HDWVAAAHAAAAAMAAAMWWWHBWA HDWVAAWHAWWAAHAWAATADHBWA Direction: Forward Position #: 7 Overlap #: 16 Alignment: ------DHRWWAAWATAWTADD--- HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Reverse Complement TWVHDTATTWTHTTWWTHWTTVWBH TTTDAWATATHATT TWVHDTATTWTTTDAWWTWTTRWTH Direction: Forward Position #: 11 Overlap #: 14 Alignment: TWVHDTATTWTHTTWWTHWTTVWBH ----------TTTDAWATATHATT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Original Motif Reverse Complement TWVHDTATTWTTTDAWWTWTTRWTH WWTAKTTCDKAATT TWVHDTATTWTTTHDTTYWTWATTH Direction: Forward Position #: 11 Overlap #: 14 Alignment: TWVHDTATTWTTTDAWWTWTTRWTH ----------WWTAKTTCDKAATT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 29 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HIF1AARNT Mycn Original Motif Reverse Complement VBACGTGV GCCACGTGSD DSCACGTGSG Direction: Backward Position #: 2 Overlap #: 8 Alignment: -VBACGTGV- GCCACGTGSD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Reverse Complement Original Motif CSCACGTGSH VGCACGTGGH CSCACGTGGH Direction: Forward Position #: 1 Overlap #: 10 Alignment: CSCACGTGSH VGCACGTGGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Original Motif Reverse Complement CSCACGTGGH GBTGCAGGTGB GBTGCASGTGBH Direction: Forward Position #: 3 Overlap #: 9 Alignment: --CSCACGTGGH GBTGCAGGTGB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Reverse Complement GBTGCASGTGBH SGGTCACGTGACCS SSKKCACGTGDCCS Direction: Forward Position #: 1 Overlap #: 12 Alignment: GBTGCASGTGBH-- SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF Combined Motif Original Motif Reverse Complement SSKKCACGTGDCCS GCGGACGTTV SGCGSACGTDVCCS Direction: Forward Position #: 2 Overlap #: 10 Alignment: SSKKCACGTGDCCS -GCGGACGTTV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 32 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ArntAhr Egr1 Original Motif Original Motif YGCGTG HGCGTGGGCGK YGCGTGGGCGK Direction: Forward Position #: 1 Overlap #: 6 Alignment: YGCGTG----- HGCGTGGGCGK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HIF1AARNT Original Motif Original Motif YGCGTGGGCGK VBACGTGV VBRCGTGGGCGK Direction: Forward Position #: 2 Overlap #: 7 Alignment: -YGCGTGGGCGK VBACGTGV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Reverse Complement VBRCGTGGGCGK GCCACGTGSD GSCACGTGSGCGK Direction: Forward Position #: 2 Overlap #: 9 Alignment: -VBRCGTGGGCGK GCCACGTGSD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Original Motif Reverse Complement GSCACGTGSGCGK BBGGGGCGGGGCVD BBGGSGCGKGGSVGK Direction: Forward Position #: 3 Overlap #: 12 Alignment: --GSCACGTGSGCGK BBGGGGCGGGGCVD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Original Motif Original Motif BBGGSGCGKGGSVGK VGCACGTGGH VGCACGBGGCGKGGSVGK Direction: Forward Position #: 4 Overlap #: 7 Alignment: ---BBGGSGCGKGGSVGK VGCACGTGGH-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 11-14-2022 18:30:07 Runtime: 350.348 seconds MOTIFSIM is written by Ngoc Tam L. 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