**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 2 Number of top significant motifs: 5 Number of best matches: 5 Similarity cutoff: >= 0.75 Matching motif database: Jaspar Core Motif tree: No Combined similar motifs: No Output file type: All Output file format: Text Input files and motif counts File name Count of motifs Dataset # U20231120-demo1.txt 20 1 U20231120-demo2.txt 45 2 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ********************************************************************** Best Matches in Database for Each Motif (Highest to Lowest) ***************************************************************** Dataset #: 1 Motif ID: 11 Motif name: Motif 11 Original motif 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: AAAACAAA Reserve complement motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: TTTGTTTT ************************************************************************ Best Matches for Motif ID 11 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0481.1 FOXP1 Reverse Complement Reverse Complement Backward 7 8 0.024974 Taxon: Vertebrates Original motif 0.331190 0.347267 0.154341 0.167203 0.421222 0.183280 0.176849 0.218650 0.498392 0.125402 0.128617 0.247588 0.578778 0.135048 0.170418 0.115756 0.443730 0.019293 0.282958 0.254019 0.254019 0.035370 0.710611 0.000000 0.228296 0.012862 0.000000 0.758842 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.051447 0.893891 0.032154 0.022508 1.000000 0.000000 0.000000 0.000000 0.565916 0.247588 0.183280 0.003215 0.781350 0.057878 0.073955 0.086817 0.327974 0.135048 0.414791 0.122186 Consensus sequence: HHDADGTAAACAAAV Reverse complement motif 0.327974 0.414791 0.135048 0.122186 0.086817 0.057878 0.073955 0.781350 0.003215 0.247588 0.183280 0.565916 0.000000 0.000000 0.000000 1.000000 0.051447 0.032154 0.893891 0.022508 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.758842 0.012862 0.000000 0.228296 0.254019 0.710611 0.035370 0.000000 0.254019 0.019293 0.282958 0.443730 0.115756 0.135048 0.170418 0.578778 0.247588 0.125402 0.128617 0.498392 0.218650 0.183280 0.176849 0.421222 0.331190 0.154341 0.347267 0.167203 Consensus sequence: VTTTGTTTACDTDHD Alignment: VTTTGTTTACDTDHD -TTTGTTTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0296.1 FKH1 Original Motif Original Motif Backward 6 8 0.026933 Taxon: Fungi Original motif 0.177533 0.287864 0.207623 0.326981 0.247495 0.192385 0.334669 0.225451 0.520521 0.084084 0.098098 0.297297 0.527054 0.076152 0.129259 0.267535 0.365365 0.073073 0.150150 0.411411 0.119238 0.146293 0.133267 0.601202 0.146293 0.004008 0.848697 0.001002 0.007021 0.003009 0.000000 0.989970 0.961886 0.037111 0.000000 0.001003 0.978958 0.011022 0.001002 0.009018 0.991984 0.001002 0.002004 0.005010 0.001002 0.926854 0.001002 0.071142 0.991984 0.001002 0.003006 0.004008 0.875752 0.039078 0.016032 0.069138 0.672345 0.049098 0.070140 0.208417 0.248497 0.191383 0.407816 0.152305 0.374749 0.158317 0.296593 0.170341 0.284569 0.184369 0.330661 0.200401 0.205411 0.116232 0.452906 0.225451 0.421844 0.192385 0.248497 0.137275 Consensus sequence: BDWWWTGTAAACAAAVDDDV Reverse complement motif 0.137275 0.192385 0.248497 0.421844 0.205411 0.452906 0.116232 0.225451 0.284569 0.330661 0.184369 0.200401 0.170341 0.158317 0.296593 0.374749 0.248497 0.407816 0.191383 0.152305 0.208417 0.049098 0.070140 0.672345 0.069138 0.039078 0.016032 0.875752 0.004008 0.001002 0.003006 0.991984 0.001002 0.001002 0.926854 0.071142 0.005010 0.001002 0.002004 0.991984 0.009018 0.011022 0.001002 0.978958 0.001003 0.037111 0.000000 0.961886 0.989970 0.003009 0.000000 0.007021 0.146293 0.848697 0.004008 0.001002 0.601202 0.146293 0.133267 0.119238 0.411411 0.073073 0.150150 0.365365 0.267535 0.076152 0.129259 0.527054 0.297297 0.084084 0.098098 0.520521 0.247495 0.334669 0.192385 0.225451 0.326981 0.287864 0.207623 0.177533 Consensus sequence: BHHDVTTTGTTTACAWWWHV Alignment: BDWWWTGTAAACAAAVDDDV -------AAAACAAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0514.1 Sox3 Reverse Complement Original Motif Forward 3 8 0.027489 Taxon: Vertebrates Original motif 0.000000 0.719400 0.159652 0.120948 0.000000 0.750847 0.000000 0.249153 0.126754 0.000000 0.000000 0.873246 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.069666 0.930334 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.337687 0.122883 0.539429 0.009192 0.412675 0.010643 0.567489 0.020319 0.316401 0.184809 0.478471 Consensus sequence: CCTTTGTYYY Reverse complement motif 0.478471 0.316401 0.184809 0.020319 0.567489 0.412675 0.010643 0.009192 0.539429 0.337687 0.122883 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.930334 0.069666 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.873246 0.000000 0.000000 0.126754 0.000000 0.000000 0.750847 0.249153 0.000000 0.159652 0.719400 0.120948 Consensus sequence: MMMACAAAGG Alignment: CCTTTGTYYY --TTTGTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0852.1 Foxk1 Reverse Complement Reverse Complement Forward 4 8 0.034209 Taxon: Vertebrates Original motif 0.340000 0.190000 0.210000 0.260000 0.405941 0.118812 0.277228 0.198020 0.600000 0.070000 0.120000 0.210000 0.710000 0.040000 0.050000 0.200000 0.120000 0.120000 0.180000 0.580000 0.200000 0.010000 0.790000 0.000000 0.020202 0.000000 0.000000 0.979798 0.920000 0.080000 0.000000 0.000000 0.970000 0.010000 0.000000 0.020000 1.000000 0.000000 0.000000 0.000000 0.000000 0.890000 0.000000 0.110000 1.000000 0.000000 0.000000 0.000000 0.808081 0.060606 0.020202 0.111111 0.565657 0.090909 0.101010 0.242424 0.270000 0.300000 0.290000 0.140000 0.340000 0.220000 0.250000 0.190000 0.151515 0.272727 0.323232 0.252525 Consensus sequence: DDAATGTAAACAAAVVB Reverse complement motif 0.151515 0.323232 0.272727 0.252525 0.190000 0.220000 0.250000 0.340000 0.270000 0.290000 0.300000 0.140000 0.242424 0.090909 0.101010 0.565657 0.111111 0.060606 0.020202 0.808081 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.890000 0.110000 0.000000 0.000000 0.000000 1.000000 0.020000 0.010000 0.000000 0.970000 0.000000 0.080000 0.000000 0.920000 0.979798 0.000000 0.000000 0.020202 0.200000 0.790000 0.010000 0.000000 0.580000 0.120000 0.180000 0.120000 0.200000 0.040000 0.050000 0.710000 0.210000 0.070000 0.120000 0.600000 0.198020 0.118812 0.277228 0.405941 0.260000 0.190000 0.210000 0.340000 Consensus sequence: BBVTTTGTTTACATTDD Alignment: BBVTTTGTTTACATTDD ---TTTGTTTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0851.1 Foxj3 Original Motif Original Motif Backward 4 8 0.038706 Taxon: Vertebrates Original motif 0.270000 0.260000 0.210000 0.260000 0.340000 0.130000 0.310000 0.220000 0.480000 0.190000 0.160000 0.170000 0.510000 0.130000 0.170000 0.190000 0.346535 0.128713 0.326733 0.198020 0.303030 0.010101 0.686869 0.000000 0.010000 0.020000 0.000000 0.970000 0.919192 0.080808 0.000000 0.000000 0.950495 0.019802 0.000000 0.029703 0.990000 0.000000 0.000000 0.010000 0.000000 0.818182 0.000000 0.181818 0.990000 0.000000 0.000000 0.010000 0.782178 0.069307 0.059406 0.089109 0.570000 0.090000 0.070000 0.270000 0.220000 0.340000 0.260000 0.180000 0.270000 0.270000 0.240000 0.220000 0.242424 0.393939 0.171717 0.191919 Consensus sequence: HDHADGTAAACAAAVVH Reverse complement motif 0.242424 0.171717 0.393939 0.191919 0.220000 0.270000 0.240000 0.270000 0.220000 0.260000 0.340000 0.180000 0.270000 0.090000 0.070000 0.570000 0.089109 0.069307 0.059406 0.782178 0.010000 0.000000 0.000000 0.990000 0.000000 0.000000 0.818182 0.181818 0.010000 0.000000 0.000000 0.990000 0.029703 0.019802 0.000000 0.950495 0.000000 0.080808 0.000000 0.919192 0.970000 0.020000 0.000000 0.010000 0.303030 0.686869 0.010101 0.000000 0.198020 0.128713 0.326733 0.346535 0.190000 0.130000 0.170000 0.510000 0.170000 0.190000 0.160000 0.480000 0.220000 0.130000 0.310000 0.340000 0.260000 0.260000 0.210000 0.270000 Consensus sequence: DBVTTTGTTTACDTHDH Alignment: HDHADGTAAACAAAVVH ------AAAACAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 12 Motif name: Motif 12 Original motif 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: AAAGATTT Reserve complement motif 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: AAATCTTT ************************************************************************ Best Matches for Motif ID 12 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0435.1 YPR015C Original Motif Reverse Complement Backward 10 8 0.024014 Taxon: Fungi Original motif 0.075150 0.242485 0.144289 0.538076 0.158317 0.204409 0.341683 0.295591 0.382382 0.170170 0.173173 0.274274 0.376754 0.240481 0.137275 0.245491 0.274549 0.050100 0.462926 0.212425 0.553106 0.169339 0.240481 0.037074 0.016032 0.748497 0.017034 0.218437 0.004008 0.004008 0.989980 0.002004 0.002002 0.016016 0.003003 0.978979 0.984970 0.007014 0.003006 0.005010 0.885772 0.001002 0.109218 0.004008 0.987976 0.002004 0.004008 0.006012 0.005010 0.002004 0.002004 0.990982 0.004012 0.985958 0.001003 0.009027 0.326326 0.575576 0.055055 0.043043 0.086259 0.221665 0.077232 0.614845 0.258517 0.190381 0.196393 0.354709 0.450450 0.110110 0.173173 0.266266 0.281281 0.396396 0.062062 0.260260 0.334002 0.330993 0.068205 0.266800 Consensus sequence: TBDHDACGTAAATCMTDDHH Reverse complement motif 0.266800 0.330993 0.068205 0.334002 0.281281 0.062062 0.396396 0.260260 0.266266 0.110110 0.173173 0.450450 0.354709 0.190381 0.196393 0.258517 0.614845 0.221665 0.077232 0.086259 0.326326 0.055055 0.575576 0.043043 0.004012 0.001003 0.985958 0.009027 0.990982 0.002004 0.002004 0.005010 0.006012 0.002004 0.004008 0.987976 0.004008 0.001002 0.109218 0.885772 0.005010 0.007014 0.003006 0.984970 0.978979 0.016016 0.003003 0.002002 0.004008 0.989980 0.004008 0.002004 0.016032 0.017034 0.748497 0.218437 0.037074 0.169339 0.240481 0.553106 0.274549 0.462926 0.050100 0.212425 0.245491 0.240481 0.137275 0.376754 0.274274 0.170170 0.173173 0.382382 0.158317 0.341683 0.204409 0.295591 0.538076 0.242485 0.144289 0.075150 Consensus sequence: HDDDARGATTTACGTHHDBA Alignment: HDDDARGATTTACGTHHDBA ---AAAGATTT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0679.1 ONECUT1 Original Motif Reverse Complement Backward 4 8 0.025754 Taxon: Vertebrates Original motif 0.387567 0.234328 0.220397 0.157708 0.521882 0.103562 0.224340 0.150217 0.648704 0.080065 0.129860 0.141371 0.753566 0.048237 0.012876 0.185321 0.953981 0.000000 0.045768 0.000251 0.999343 0.000131 0.000394 0.000131 0.000000 0.000263 0.000788 0.998950 0.000000 0.999343 0.000000 0.000657 0.370039 0.000000 0.629698 0.000263 0.998687 0.000000 0.000000 0.001313 0.000263 0.000394 0.000000 0.999343 0.888370 0.015413 0.023587 0.072630 0.398683 0.252470 0.070481 0.278366 0.189012 0.258281 0.121451 0.431257 Consensus sequence: VAAAAATCRATAHH Reverse complement motif 0.431257 0.258281 0.121451 0.189012 0.278366 0.252470 0.070481 0.398683 0.072630 0.015413 0.023587 0.888370 0.999343 0.000394 0.000000 0.000263 0.001313 0.000000 0.000000 0.998687 0.370039 0.629698 0.000000 0.000263 0.000000 0.000000 0.999343 0.000657 0.998950 0.000263 0.000788 0.000000 0.000131 0.000131 0.000394 0.999343 0.000251 0.000000 0.045768 0.953981 0.185321 0.048237 0.012876 0.753566 0.141371 0.080065 0.129860 0.648704 0.150217 0.103562 0.224340 0.521882 0.157708 0.234328 0.220397 0.387567 Consensus sequence: HHTATMGATTTTTB Alignment: HHTATMGATTTTTB ---AAAGATTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0756.1 ONECUT2 Original Motif Reverse Complement Forward 4 8 0.027346 Taxon: Vertebrates Original motif 0.432296 0.187132 0.226661 0.153911 0.573412 0.080774 0.216660 0.129154 0.676722 0.072282 0.106716 0.144280 0.740118 0.048864 0.025833 0.185185 0.942155 0.004754 0.045166 0.007924 0.989596 0.000416 0.007491 0.002497 0.003329 0.003329 0.003745 0.989596 0.002512 0.995396 0.000000 0.002093 0.373016 0.006683 0.620301 0.000000 0.989596 0.000832 0.000416 0.009155 0.008292 0.005804 0.000000 0.985904 0.857864 0.030303 0.037879 0.073954 0.484497 0.180395 0.074538 0.260570 0.273759 0.221194 0.099664 0.405383 Consensus sequence: VAAAAATCRATAHH Reverse complement motif 0.405383 0.221194 0.099664 0.273759 0.260570 0.180395 0.074538 0.484497 0.073954 0.030303 0.037879 0.857864 0.985904 0.005804 0.000000 0.008292 0.009155 0.000832 0.000416 0.989596 0.373016 0.620301 0.006683 0.000000 0.002512 0.000000 0.995396 0.002093 0.989596 0.003329 0.003745 0.003329 0.002497 0.000416 0.007491 0.989596 0.007924 0.004754 0.045166 0.942155 0.185185 0.048864 0.025833 0.740118 0.144280 0.072282 0.106716 0.676722 0.129154 0.080774 0.216660 0.573412 0.153911 0.187132 0.226661 0.432296 Consensus sequence: HHTATMGATTTTTB Alignment: HHTATMGATTTTTB ---AAAGATTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0573.1 ATHB-9 Original Motif Original Motif Forward 7 8 0.032933 Taxon: Plants Original motif 0.444444 0.222222 0.111111 0.222222 0.357143 0.214286 0.214286 0.214286 0.312500 0.250000 0.125000 0.312500 0.166667 0.444444 0.111111 0.277778 0.000000 0.038462 0.961538 0.000000 0.000000 0.230769 0.000000 0.769231 0.961538 0.000000 0.038462 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.115385 0.884615 0.653846 0.000000 0.346154 0.000000 0.000000 0.961538 0.038462 0.000000 0.294118 0.058824 0.235294 0.411765 0.166667 0.500000 0.000000 0.333333 0.000000 0.300000 0.400000 0.300000 0.000000 0.625000 0.375000 0.000000 Consensus sequence: HDHHGTAATGATTRCDYBS Reverse complement motif 0.000000 0.375000 0.625000 0.000000 0.000000 0.400000 0.300000 0.300000 0.166667 0.000000 0.500000 0.333333 0.411765 0.058824 0.235294 0.294118 0.000000 0.038462 0.961538 0.000000 0.000000 0.000000 0.346154 0.653846 0.884615 0.000000 0.115385 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.038462 0.961538 0.769231 0.230769 0.000000 0.000000 0.000000 0.961538 0.038462 0.000000 0.166667 0.111111 0.444444 0.277778 0.312500 0.250000 0.125000 0.312500 0.214286 0.214286 0.214286 0.357143 0.222222 0.222222 0.111111 0.444444 Consensus sequence: SBKDGKAATCATTACDHBH Alignment: HDHHGTAATGATTRCDYBS ------AAAGATTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0378.1 SFP1 Original Motif Original Motif Forward 7 8 0.033274 Taxon: Fungi Original motif 0.428285 0.159478 0.161484 0.250752 0.202405 0.293587 0.194389 0.309619 0.289579 0.174349 0.192385 0.343687 0.250501 0.217435 0.293587 0.238477 0.353707 0.077154 0.297595 0.271543 0.533534 0.042042 0.342342 0.082082 0.782783 0.073073 0.071071 0.073073 0.899800 0.036072 0.046092 0.018036 0.905812 0.009018 0.050100 0.035070 0.857573 0.014042 0.042126 0.086259 0.541542 0.034034 0.016016 0.408408 0.086259 0.042126 0.014042 0.857573 0.035070 0.050100 0.009018 0.905812 0.018036 0.046092 0.036072 0.899800 0.073073 0.071071 0.073073 0.782783 0.126253 0.405812 0.091182 0.376754 0.082164 0.354709 0.103206 0.459920 0.327327 0.201201 0.165165 0.306306 0.115230 0.428858 0.154309 0.301603 0.217435 0.083166 0.374749 0.324649 0.216433 0.169339 0.405812 0.208417 Consensus sequence: DHDDDRAAAAWTTTTYYHBDD Reverse complement motif 0.216433 0.405812 0.169339 0.208417 0.217435 0.374749 0.083166 0.324649 0.115230 0.154309 0.428858 0.301603 0.306306 0.201201 0.165165 0.327327 0.459920 0.354709 0.103206 0.082164 0.126253 0.091182 0.405812 0.376754 0.782783 0.071071 0.073073 0.073073 0.899800 0.046092 0.036072 0.018036 0.905812 0.050100 0.009018 0.035070 0.857573 0.042126 0.014042 0.086259 0.408408 0.034034 0.016016 0.541542 0.086259 0.014042 0.042126 0.857573 0.035070 0.009018 0.050100 0.905812 0.018036 0.036072 0.046092 0.899800 0.073073 0.073073 0.071071 0.782783 0.082082 0.042042 0.342342 0.533534 0.271543 0.077154 0.297595 0.353707 0.250501 0.293587 0.217435 0.238477 0.343687 0.174349 0.192385 0.289579 0.309619 0.293587 0.194389 0.202405 0.250752 0.159478 0.161484 0.428285 Consensus sequence: HHBHMKAAAAWTTTTKDHDHD Alignment: DHDDDRAAAAWTTTTYYHBDD ------AAAGATTT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 20 Motif name: Motif 20 Original motif 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: ATAAAA Reserve complement motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: TTTTAT ************************************************************************ Best Matches for Motif ID 20 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0465.1 CDX2 Original Motif Original Motif Backward 1 6 0.015237 Taxon: Vertebrates Original motif 0.383845 0.199750 0.300564 0.115842 0.416406 0.005009 0.314339 0.264245 0.192862 0.085160 0.721979 0.000000 0.000000 0.656230 0.000000 0.343770 0.436443 0.520977 0.000000 0.042580 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.634314 0.093926 0.195992 0.075767 Consensus sequence: VDGYMATAAAA Reverse complement motif 0.075767 0.093926 0.195992 0.634314 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.436443 0.000000 0.520977 0.042580 0.000000 0.000000 0.656230 0.343770 0.192862 0.721979 0.085160 0.000000 0.264245 0.005009 0.314339 0.416406 0.115842 0.199750 0.300564 0.383845 Consensus sequence: TTTTATRKCDB Alignment: VDGYMATAAAA -----ATAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0909.1 HOXD13 Original Motif Original Motif Backward 2 6 0.017480 Taxon: Vertebrates Original motif 0.045998 0.632935 0.270469 0.050598 0.017045 0.572443 0.005682 0.404830 0.609389 0.307352 0.000000 0.083260 0.924731 0.000000 0.036290 0.038978 0.000000 0.001451 0.000000 0.998549 0.862155 0.000000 0.000000 0.137845 0.989928 0.004317 0.000000 0.005755 0.998549 0.001451 0.000000 0.000000 0.806565 0.087925 0.039859 0.065651 0.353198 0.300872 0.106105 0.239826 Consensus sequence: CYMATAAAAH Reverse complement motif 0.239826 0.300872 0.106105 0.353198 0.065651 0.087925 0.039859 0.806565 0.000000 0.001451 0.000000 0.998549 0.005755 0.004317 0.000000 0.989928 0.137845 0.000000 0.000000 0.862155 0.998549 0.001451 0.000000 0.000000 0.038978 0.000000 0.036290 0.924731 0.083260 0.307352 0.000000 0.609389 0.017045 0.005682 0.572443 0.404830 0.045998 0.270469 0.632935 0.050598 Consensus sequence: HTTTTATYKG Alignment: CYMATAAAAH ---ATAAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0216.2 cad Original Motif Original Motif Forward 5 6 0.018346 Taxon: Insects Original motif 0.370821 0.000000 0.496309 0.132870 0.249674 0.148068 0.602258 0.000000 0.000000 0.643074 0.000000 0.356926 0.323491 0.640469 0.000000 0.036040 0.919236 0.000000 0.080764 0.000000 0.000000 0.041251 0.000000 0.958749 0.970908 0.000000 0.000000 0.029092 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.710812 0.049935 0.063830 0.175423 0.454190 0.327833 0.000000 0.217977 Consensus sequence: RGYMATAAAAM Reverse complement motif 0.217977 0.327833 0.000000 0.454190 0.175423 0.049935 0.063830 0.710812 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.029092 0.000000 0.000000 0.970908 0.958749 0.041251 0.000000 0.000000 0.000000 0.000000 0.080764 0.919236 0.323491 0.000000 0.640469 0.036040 0.000000 0.000000 0.643074 0.356926 0.249674 0.602258 0.148068 0.000000 0.370821 0.496309 0.000000 0.132870 Consensus sequence: YTTTTATRKCM Alignment: RGYMATAAAAM ----ATAAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0901.1 HOXB13 Reverse Complement Reverse Complement Forward 2 6 0.020272 Taxon: Vertebrates Original motif 0.074124 0.744180 0.138614 0.043083 0.032204 0.772071 0.003887 0.191838 0.644645 0.231803 0.002782 0.120770 0.944312 0.007470 0.012903 0.035314 0.000000 0.002511 0.000000 0.997489 0.887648 0.007022 0.008299 0.097032 0.993924 0.000000 0.000000 0.006076 0.966632 0.026764 0.000348 0.006257 0.723465 0.143080 0.043704 0.089750 0.355268 0.364617 0.069040 0.211075 Consensus sequence: CCAATAAAAH Reverse complement motif 0.355268 0.069040 0.364617 0.211075 0.089750 0.143080 0.043704 0.723465 0.006257 0.026764 0.000348 0.966632 0.006076 0.000000 0.000000 0.993924 0.097032 0.007022 0.008299 0.887648 0.997489 0.002511 0.000000 0.000000 0.035314 0.007470 0.012903 0.944312 0.120770 0.231803 0.002782 0.644645 0.032204 0.003887 0.772071 0.191838 0.074124 0.138614 0.744180 0.043083 Consensus sequence: DTTTTATTGG Alignment: DTTTTATTGG -TTTTAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0650.1 HOXA13 Reverse Complement Reverse Complement Forward 2 6 0.026994 Taxon: Vertebrates Original motif 0.161458 0.643229 0.184896 0.010417 0.002625 0.648294 0.020997 0.328084 0.669377 0.189702 0.024390 0.116531 0.888489 0.000000 0.000000 0.111511 0.000000 0.000000 0.000000 1.000000 0.894928 0.032609 0.018116 0.054348 0.939163 0.000000 0.000000 0.060837 0.988000 0.012000 0.000000 0.000000 0.641558 0.155844 0.114286 0.088312 0.421053 0.291498 0.093117 0.194332 Consensus sequence: CYAATAAAAH Reverse complement motif 0.194332 0.291498 0.093117 0.421053 0.088312 0.155844 0.114286 0.641558 0.000000 0.012000 0.000000 0.988000 0.060837 0.000000 0.000000 0.939163 0.054348 0.032609 0.018116 0.894928 1.000000 0.000000 0.000000 0.000000 0.111511 0.000000 0.000000 0.888489 0.116531 0.189702 0.024390 0.669377 0.002625 0.020997 0.648294 0.328084 0.161458 0.184896 0.643229 0.010417 Consensus sequence: HTTTTATTKG Alignment: HTTTTATTKG -TTTTAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 52 Motif name: Motif 52 Original motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: TTACWGTTT Reserve complement motif 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: AAACWGTAA ************************************************************************ Best Matches for Motif ID 52 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0653.1 IRF9 Reverse Complement Original Motif Backward 3 9 0.045819 Taxon: Vertebrates Original motif 0.944172 0.014161 0.011710 0.029956 0.573621 0.119424 0.048921 0.258034 0.013362 0.945460 0.008999 0.032179 0.012223 0.000853 0.985503 0.001421 0.998272 0.001440 0.000288 0.000000 0.999135 0.000000 0.000000 0.000865 0.999135 0.000576 0.000000 0.000288 0.011572 0.932992 0.053014 0.002422 0.003709 0.803662 0.000000 0.192629 0.000576 0.000000 0.999135 0.000288 0.999423 0.000577 0.000000 0.000000 0.993694 0.000287 0.000000 0.006019 0.999135 0.000000 0.000000 0.000865 0.001078 0.933998 0.064386 0.000539 0.027708 0.315981 0.001959 0.654352 Consensus sequence: AACGAAACCGAAACT Reverse complement motif 0.654352 0.315981 0.001959 0.027708 0.001078 0.064386 0.933998 0.000539 0.000865 0.000000 0.000000 0.999135 0.006019 0.000287 0.000000 0.993694 0.000000 0.000577 0.000000 0.999423 0.000576 0.999135 0.000000 0.000288 0.003709 0.000000 0.803662 0.192629 0.011572 0.053014 0.932992 0.002422 0.000288 0.000576 0.000000 0.999135 0.000865 0.000000 0.000000 0.999135 0.000000 0.001440 0.000288 0.998272 0.012223 0.985503 0.000853 0.001421 0.013362 0.008999 0.945460 0.032179 0.258034 0.119424 0.048921 0.573621 0.029956 0.014161 0.011710 0.944172 Consensus sequence: AGTTTCGGTTTCGTT Alignment: AACGAAACCGAAACT ----AAACWGTAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0652.1 IRF8 Reverse Complement Original Motif Backward 3 9 0.047529 Taxon: Vertebrates Original motif 0.222695 0.339571 0.097142 0.340592 0.009205 0.858854 0.002776 0.129164 0.000510 0.000000 0.999150 0.000340 0.999660 0.000340 0.000000 0.000000 0.994417 0.000000 0.000000 0.005583 0.999490 0.000000 0.000000 0.000510 0.008285 0.901810 0.088984 0.000921 0.000844 0.826490 0.000000 0.172666 0.000000 0.000000 1.000000 0.000000 0.999490 0.000000 0.000510 0.000000 0.988231 0.000000 0.000336 0.011432 0.999150 0.000850 0.000000 0.000000 0.001579 0.843934 0.152333 0.002154 0.041901 0.189792 0.001044 0.767263 Consensus sequence: HCGAAACCGAAACT Reverse complement motif 0.767263 0.189792 0.001044 0.041901 0.001579 0.152333 0.843934 0.002154 0.000000 0.000850 0.000000 0.999150 0.011432 0.000000 0.000336 0.988231 0.000000 0.000000 0.000510 0.999490 0.000000 1.000000 0.000000 0.000000 0.000844 0.000000 0.826490 0.172666 0.008285 0.088984 0.901810 0.000921 0.000510 0.000000 0.000000 0.999490 0.005583 0.000000 0.000000 0.994417 0.000000 0.000340 0.000000 0.999660 0.000510 0.999150 0.000000 0.000340 0.009205 0.002776 0.858854 0.129164 0.340592 0.339571 0.097142 0.222695 Consensus sequence: AGTTTCGGTTTCGH Alignment: HCGAAACCGAAACT ---AAACWGTAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0050.2 IRF1 Reverse Complement Reverse Complement Backward 7 9 0.057903 Taxon: Vertebrates Original motif 0.232012 0.234949 0.195301 0.337739 0.184288 0.208517 0.184288 0.422907 0.127019 0.237885 0.155653 0.479442 0.101322 0.315712 0.108664 0.474302 0.539648 0.074156 0.265051 0.121145 0.017621 0.581498 0.371512 0.029369 0.008811 0.000000 0.000000 0.991189 0.000000 0.022761 0.000000 0.977239 0.000000 0.041116 0.002937 0.955947 0.000000 0.917034 0.000000 0.082966 0.670338 0.028634 0.174743 0.126285 0.014684 0.577827 0.253304 0.154185 0.011747 0.000734 0.000000 0.987518 0.005140 0.010279 0.003671 0.980910 0.008076 0.042584 0.000000 0.949339 0.012482 0.751101 0.020558 0.215859 0.376652 0.179883 0.193098 0.250367 0.160059 0.340675 0.213656 0.285609 0.106461 0.136564 0.083700 0.673275 0.145374 0.141703 0.072687 0.640235 0.121880 0.243025 0.110866 0.524229 Consensus sequence: HBBYASTTTCACTTTCDBTTT Reverse complement motif 0.524229 0.243025 0.110866 0.121880 0.640235 0.141703 0.072687 0.145374 0.673275 0.136564 0.083700 0.106461 0.160059 0.213656 0.340675 0.285609 0.250367 0.179883 0.193098 0.376652 0.012482 0.020558 0.751101 0.215859 0.949339 0.042584 0.000000 0.008076 0.980910 0.010279 0.003671 0.005140 0.987518 0.000734 0.000000 0.011747 0.014684 0.253304 0.577827 0.154185 0.126285 0.028634 0.174743 0.670338 0.000000 0.000000 0.917034 0.082966 0.955947 0.041116 0.002937 0.000000 0.977239 0.022761 0.000000 0.000000 0.991189 0.000000 0.000000 0.008811 0.017621 0.371512 0.581498 0.029369 0.121145 0.074156 0.265051 0.539648 0.474302 0.315712 0.108664 0.101322 0.479442 0.237885 0.155653 0.127019 0.422907 0.208517 0.184288 0.184288 0.337739 0.234949 0.195301 0.232012 Consensus sequence: AAABDGAAAGTGAAASTMVHH Alignment: AAABDGAAAGTGAAASTMVHH ------AAACWGTAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0867.1 SOX4 Reverse Complement Reverse Complement Forward 2 9 0.058528 Taxon: Vertebrates Original motif 0.252747 0.126374 0.472527 0.148352 1.000000 0.000000 0.000000 0.000000 0.990942 0.000000 0.009058 0.000000 0.000000 1.000000 0.000000 0.000000 0.998175 0.000000 0.001825 0.000000 0.992740 0.000000 0.005445 0.001815 0.000000 0.000000 0.001825 0.998175 0.000000 0.000000 0.019713 0.980287 0.084375 0.060937 0.621875 0.232813 0.000000 1.000000 0.000000 0.000000 0.998175 0.000000 0.001825 0.000000 0.000000 0.000000 0.956294 0.043706 0.000000 0.000000 0.007260 0.992740 0.001825 0.000000 0.998175 0.000000 0.000000 0.001825 0.000000 0.998175 0.003630 0.001815 0.001815 0.992740 Consensus sequence: DAACAATTGCAGTGTT Reverse complement motif 0.992740 0.001815 0.001815 0.003630 0.998175 0.001825 0.000000 0.000000 0.001825 0.998175 0.000000 0.000000 0.992740 0.000000 0.007260 0.000000 0.000000 0.956294 0.000000 0.043706 0.000000 0.000000 0.001825 0.998175 0.000000 0.000000 1.000000 0.000000 0.084375 0.621875 0.060937 0.232813 0.980287 0.000000 0.019713 0.000000 0.998175 0.000000 0.001825 0.000000 0.001815 0.000000 0.005445 0.992740 0.000000 0.000000 0.001825 0.998175 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.009058 0.990942 0.000000 0.000000 0.000000 1.000000 0.252747 0.472527 0.126374 0.148352 Consensus sequence: AACACTGCAATTGTTH Alignment: AACACTGCAATTGTTH -AAACWGTAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0407.1 THI2 Original Motif Reverse Complement Backward 3 9 0.059161 Taxon: Fungi Original motif 0.081423 0.000000 0.918577 0.000000 0.000000 0.000000 1.000000 0.000000 0.517504 0.436073 0.000000 0.046423 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.809486 0.000000 0.190514 0.000000 0.402819 0.000000 0.597181 0.053343 0.450038 0.429001 0.067618 0.346519 0.000000 0.000000 0.653481 0.728063 0.000000 0.000000 0.271937 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.643196 0.000000 0.356804 0.000000 0.100311 0.830482 0.069207 0.000000 Consensus sequence: GGMAACYSWAAGARC Reverse complement motif 0.100311 0.069207 0.830482 0.000000 0.000000 0.000000 0.356804 0.643196 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.271937 0.000000 0.000000 0.728063 0.653481 0.000000 0.000000 0.346519 0.053343 0.429001 0.450038 0.067618 0.597181 0.402819 0.000000 0.000000 0.000000 0.000000 0.809486 0.190514 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.046423 0.436073 0.000000 0.517504 0.000000 1.000000 0.000000 0.000000 0.081423 0.918577 0.000000 0.000000 Consensus sequence: GKTCTTWSMGTTYCC Alignment: GKTCTTWSMGTTYCC ----TTACWGTTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 54 Motif name: Motif 54 Original motif 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: AAAGATGA Reserve complement motif 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: TCATCTTT ************************************************************************ Best Matches for Motif ID 54 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0547.1 skn-1 Original Motif Original Motif Forward 3 8 0.044329 Taxon: Nematodes Original motif 0.597484 0.135220 0.194969 0.072327 0.745283 0.037736 0.122642 0.094340 0.657233 0.075472 0.172956 0.094340 0.842767 0.000000 0.050314 0.106918 0.100629 0.113208 0.081761 0.704403 0.000000 0.053459 0.946541 0.000000 0.833333 0.110063 0.015723 0.040881 0.062893 0.000000 0.000000 0.937107 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.097484 0.562893 0.069182 0.270440 0.783019 0.000000 0.088050 0.128931 0.754717 0.000000 0.000000 0.245283 0.437107 0.050314 0.066038 0.446541 0.289308 0.116352 0.166667 0.427673 Consensus sequence: AAAATGATGACAAWD Reverse complement motif 0.427673 0.116352 0.166667 0.289308 0.446541 0.050314 0.066038 0.437107 0.245283 0.000000 0.000000 0.754717 0.128931 0.000000 0.088050 0.783019 0.097484 0.069182 0.562893 0.270440 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.937107 0.000000 0.000000 0.062893 0.040881 0.110063 0.015723 0.833333 0.000000 0.946541 0.053459 0.000000 0.704403 0.113208 0.081761 0.100629 0.106918 0.000000 0.050314 0.842767 0.094340 0.075472 0.172956 0.657233 0.094340 0.037736 0.122642 0.745283 0.072327 0.135220 0.194969 0.597484 Consensus sequence: DWTTGTCATCATTTT Alignment: AAAATGATGACAAWD --AAAGATGA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0080.4 SPI1 Original Motif Original Motif Forward 3 8 0.051418 Taxon: Vertebrates Original motif 0.644877 0.090701 0.186632 0.077790 0.911188 0.004761 0.069035 0.015016 0.992146 0.000393 0.001571 0.005890 0.980751 0.000000 0.000000 0.019249 0.899649 0.000739 0.002772 0.096840 0.008826 0.044308 0.946506 0.000360 0.272120 0.617393 0.110335 0.000152 0.005439 0.000188 0.993998 0.000375 0.000000 0.000188 0.999812 0.000000 0.999413 0.000392 0.000000 0.000196 0.998635 0.000195 0.000195 0.000975 0.000000 0.033880 0.965936 0.000184 0.004147 0.013626 0.002370 0.979858 0.507508 0.057658 0.146747 0.288088 Consensus sequence: AAAAAGCGGAAGTW Reverse complement motif 0.288088 0.057658 0.146747 0.507508 0.979858 0.013626 0.002370 0.004147 0.000000 0.965936 0.033880 0.000184 0.000975 0.000195 0.000195 0.998635 0.000196 0.000392 0.000000 0.999413 0.000000 0.999812 0.000188 0.000000 0.005439 0.993998 0.000188 0.000375 0.272120 0.110335 0.617393 0.000152 0.008826 0.946506 0.044308 0.000360 0.096840 0.000739 0.002772 0.899649 0.019249 0.000000 0.000000 0.980751 0.005890 0.000393 0.001571 0.992146 0.015016 0.004761 0.069035 0.911188 0.077790 0.090701 0.186632 0.644877 Consensus sequence: WACTTCCGCTTTTT Alignment: AAAAAGCGGAAGTW --AAAGATGA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0859.1 Rarg Reverse Complement Reverse Complement Backward 8 8 0.053592 Taxon: Vertebrates Original motif 0.468191 0.061751 0.421216 0.048841 0.691174 0.014072 0.294275 0.000479 0.000235 0.000000 0.999765 0.000000 0.000000 0.000217 0.867445 0.132338 0.001971 0.003449 0.006306 0.988275 0.000235 0.990605 0.002975 0.006185 0.998081 0.000226 0.001693 0.000000 0.956200 0.005110 0.011889 0.026802 0.900081 0.001320 0.062754 0.035845 0.958580 0.000416 0.041003 0.000000 0.000075 0.000075 0.999623 0.000226 0.000000 0.000168 0.779510 0.220322 0.000608 0.004052 0.005167 0.990173 0.000000 0.985549 0.005629 0.008822 0.990578 0.000433 0.008880 0.000108 0.461783 0.202208 0.103278 0.232731 Consensus sequence: RAGGTCAAAAGGTCAH Reverse complement motif 0.232731 0.202208 0.103278 0.461783 0.000108 0.000433 0.008880 0.990578 0.000000 0.005629 0.985549 0.008822 0.990173 0.004052 0.005167 0.000608 0.000000 0.779510 0.000168 0.220322 0.000075 0.999623 0.000075 0.000226 0.000000 0.000416 0.041003 0.958580 0.035845 0.001320 0.062754 0.900081 0.026802 0.005110 0.011889 0.956200 0.000000 0.000226 0.001693 0.998081 0.000235 0.002975 0.990605 0.006185 0.988275 0.003449 0.006306 0.001971 0.000000 0.867445 0.000217 0.132338 0.000235 0.999765 0.000000 0.000000 0.000479 0.014072 0.294275 0.691174 0.048841 0.061751 0.421216 0.468191 Consensus sequence: HTGACCTTTTGACCTK Alignment: HTGACCTTTTGACCTK -TCATCTTT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0769.1 Tcf7 Original Motif Original Motif Forward 1 8 0.054521 Taxon: Vertebrates Original motif 0.661871 0.081535 0.140288 0.116307 0.734448 0.028784 0.133705 0.103064 0.935950 0.004132 0.027893 0.032025 0.004845 0.268411 0.720930 0.005814 0.950000 0.002083 0.004167 0.043750 0.000000 0.005574 0.020067 0.974359 0.019301 0.935662 0.025735 0.019301 0.988172 0.000000 0.005376 0.006452 0.979787 0.006383 0.010638 0.003191 0.995647 0.000000 0.000000 0.004353 0.036446 0.000000 0.963554 0.000000 0.159960 0.146881 0.603622 0.089537 Consensus sequence: AAAGATCAAAGG Reverse complement motif 0.159960 0.603622 0.146881 0.089537 0.036446 0.963554 0.000000 0.000000 0.004353 0.000000 0.000000 0.995647 0.003191 0.006383 0.010638 0.979787 0.006452 0.000000 0.005376 0.988172 0.019301 0.025735 0.935662 0.019301 0.974359 0.005574 0.020067 0.000000 0.043750 0.002083 0.004167 0.950000 0.004845 0.720930 0.268411 0.005814 0.032025 0.004132 0.027893 0.935950 0.103064 0.028784 0.133705 0.734448 0.116307 0.081535 0.140288 0.661871 Consensus sequence: CCTTTGATCTTT Alignment: AAAGATCAAAGG AAAGATGA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0856.1 RXRG Reverse Complement Reverse Complement Backward 7 8 0.054839 Taxon: Vertebrates Original motif 0.223952 0.108770 0.613293 0.053984 0.404125 0.001792 0.593514 0.000569 0.002069 0.000169 0.994511 0.003251 0.003868 0.000341 0.846145 0.149645 0.000127 0.000891 0.003207 0.995775 0.000454 0.923740 0.011899 0.063906 0.997895 0.000000 0.002000 0.000105 0.956753 0.000389 0.026925 0.015933 0.952687 0.000000 0.047168 0.000144 0.000304 0.000034 0.998985 0.000677 0.000377 0.000031 0.876653 0.122938 0.000053 0.000451 0.003553 0.995943 0.001445 0.925669 0.017323 0.055563 0.938751 0.001101 0.059457 0.000691 Consensus sequence: GRGGTCAAAGGTCA Reverse complement motif 0.000691 0.001101 0.059457 0.938751 0.001445 0.017323 0.925669 0.055563 0.995943 0.000451 0.003553 0.000053 0.000377 0.876653 0.000031 0.122938 0.000304 0.998985 0.000034 0.000677 0.000144 0.000000 0.047168 0.952687 0.015933 0.000389 0.026925 0.956753 0.000105 0.000000 0.002000 0.997895 0.000454 0.011899 0.923740 0.063906 0.995775 0.000891 0.003207 0.000127 0.003868 0.846145 0.000341 0.149645 0.002069 0.994511 0.000169 0.003251 0.404125 0.593514 0.001792 0.000569 0.223952 0.613293 0.108770 0.053984 Consensus sequence: TGACCTTTGACCMC Alignment: TGACCTTTGACCMC TCATCTTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 11-20-2023 14:18:32 Runtime: 166.142386 seconds MOTIFSIM is written by Ngoc Tam L. Tran