MOTIFSIM - MOTIF SIMilarity Detection Tool

Version 2.2

INPUT

Input Parameters
Number of files: 2
Number of top significant motifs: 1
Number of best matches: 1
Similarity cutoff >= 0.75
Matching motif database: Jaspar Core
Motif tree: Yes
Combined similar motifs: Yes
Output file type: All
Output file format: All

Input files and motif counts
File name Count of motifs Dataset number
U20231121_R_11-21-23_1450_InsertFile1.txt 57 1
U20231121_R_11-21-23_1450_InsertFile2.txt 57 2

RESULTS

Best Matches in Database for Each Motif (Highest to Lowest)

Dataset #: 2 Motif ID: 72 Motif name: Motif 72

Original motif Reverse complement motif
Consensus sequence: CCATGGCAACVG Consensus sequence: CVGTTGCCATGG

Best Matches for Motif ID 72 (Highest to Lowest)

Motif ID: MA0138.2
Motif name: REST
Taxon: Vertebrates
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0637808

Alignment:
GGYGCTGTCCATGGTGCTGAA
--CVGTTGCCATGG-------

Original motif Reverse complement motif
Consensus sequence: TTCAGCACCATGGACAGCKCC Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Results created by MOTIFSIM on 11-21-2023 16:21:43
Runtime: 3497.06 seconds

MOTIFSIM is written by Ngoc Tam L. Tran
Motif logo generated by weblogo