**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 2 Number of top significant motifs: 1 Number of best matches: 1 Similarity cutoff: >= 0.75 Matching motif database: Jaspar Core Motif tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # U20231121_R_11-21-23_1450_InsertFile1.txt 57 1 U20231121_R_11-21-23_1450_InsertFile2.txt 57 2 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** *************************************************************** Combined Motifs for Top Best Match Motif ID 1 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 1 Motif 58 Original Motif Original Motif YYRRCCAATCAGAGV YYRRCCAATCAGAGV YYRRCCAATCAGAGV Direction: Forward Position #: 1 Overlap #: 15 Alignment: YYRRCCAATCAGAGV YYRRCCAATCAGAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 67 Reverse Complement Original Motif VCTCTGATTGGKKKM CATCTGCTTGGAGA CMTCTGMTTGGWGDM Direction: Forward Position #: 1 Overlap #: 14 Alignment: VCTCTGATTGGKKKM CATCTGCTTGGAGA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 2 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Motif 59 Original Motif Original Motif RGGTCARAGGTCA RGGTCARAGGTCA RGGTCARAGGTCA Direction: Forward Position #: 1 Overlap #: 13 Alignment: RGGTCARAGGTCA RGGTCARAGGTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 3 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Motif 60 Original Motif Original Motif HCAAVATGGCGGCBV HCAAVATGGCGGCBV HCAAVATGGCGGCBV Direction: Forward Position #: 1 Overlap #: 15 Alignment: HCAAVATGGCGGCBV HCAAVATGGCGGCBV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 4 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Motif 61 Original Motif Original Motif BBRTGACGTCAYVV BBRTGACGTCAYVV BBRTGACGTCAYVV Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBRTGACGTCAYVV BBRTGACGTCAYVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 5 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Motif 62 Original Motif Original Motif CCCCTCCCCCY CCCCTCCCCCY CCCCTCCCCCY Direction: Forward Position #: 1 Overlap #: 11 Alignment: CCCCTCCCCCY CCCCTCCCCCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 6 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Motif 63 Original Motif Original Motif ATTTGCATAWHA ATTTGCATAWHA ATTTGCATAWHA Direction: Forward Position #: 1 Overlap #: 12 Alignment: ATTTGCATAWHA ATTTGCATAWHA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 7 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Motif 64 Original Motif Original Motif GCATGMTGGGA GCATGMTGGGA GCATGMTGGGA Direction: Backward Position #: 1 Overlap #: 11 Alignment: GCATGMTGGGA GCATGMTGGGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 8 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Motif 65 Original Motif Original Motif GTCACGTGAC GTCACGTGAC GTCACGTGAC Direction: Forward Position #: 1 Overlap #: 10 Alignment: GTCACGTGAC GTCACGTGAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 9 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Motif 66 Original Motif Original Motif CCGGAAGTRA CCGGAAGTRA CCGGAAGTRA Direction: Forward Position #: 1 Overlap #: 10 Alignment: CCGGAAGTRA CCGGAAGTRA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 10 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 Motif 67 Original Motif Original Motif CATCTGCTTGGAGA CATCTGCTTGGAGA CATCTGCTTGGAGA Direction: Backward Position #: 1 Overlap #: 14 Alignment: CATCTGCTTGGAGA CATCTGCTTGGAGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 11 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 11 Motif 68 Original Motif Original Motif AACAATRGV AACAATRGV AACAATRGV Direction: Forward Position #: 1 Overlap #: 9 Alignment: AACAATRGV AACAATRGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 12 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 12 Motif 69 Original Motif Original Motif CGCATGCGCASTVS CGCATGCGCASTVS CGCATGCGCASTVS Direction: Forward Position #: 1 Overlap #: 14 Alignment: CGCATGCGCASTVS CGCATGCGCASTVS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 13 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 13 Motif 70 Original Motif Original Motif RVTCTCGCGAGABY RVTCTCGCGAGABY RVTCTCGCGAGABY Direction: Backward Position #: 1 Overlap #: 14 Alignment: RVTCTCGCGAGABY RVTCTCGCGAGABY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 14 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 14 Motif 71 Original Motif Original Motif AACAACAACA AACAACAACA AACAACAACA Direction: Backward Position #: 1 Overlap #: 10 Alignment: AACAACAACA AACAACAACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 15 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Motif 72 Original Motif Original Motif CCATGGCAACVG CCATGGCAACVG CCATGGCAACVG Direction: Backward Position #: 1 Overlap #: 12 Alignment: CCATGGCAACVG CCATGGCAACVG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 16 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Motif 73 Original Motif Original Motif TCCCGCCVW TCCCGCCVW TCCCGCCVW Direction: Backward Position #: 1 Overlap #: 9 Alignment: TCCCGCCVW TCCCGCCVW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 17 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 17 Motif 74 Original Motif Original Motif AGGTGTGAAAWV AGGTGTGAAAWV AGGTGTGAAAWV Direction: Backward Position #: 1 Overlap #: 12 Alignment: AGGTGTGAAAWV AGGTGTGAAAWV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 18 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 18 Motif 75 Original Motif Original Motif GMTAATTA GMTAATTA GMTAATTA Direction: Forward Position #: 1 Overlap #: 8 Alignment: GMTAATTA GMTAATTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 19 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Motif 76 Original Motif Original Motif CCAWATWTGG CCAWATWTGG CCAWATWTGG Direction: Forward Position #: 1 Overlap #: 10 Alignment: CCAWATWTGG CCAWATWTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 20 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 20 Motif 77 Original Motif Original Motif DVTACWWGTABH DVTACWWGTABH DVTACWWGTABH Direction: Backward Position #: 1 Overlap #: 12 Alignment: DVTACWWGTABH DVTACWWGTABH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 21 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 21 Motif 78 Original Motif Original Motif GGCCACGCCC GGCCACGCCC GGCCACGCCC Direction: Backward Position #: 1 Overlap #: 10 Alignment: GGCCACGCCC GGCCACGCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 22 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 22 Motif 79 Original Motif Original Motif ACCAAGGAGGTTA ACCAAGGAGGTTA ACCAAGGAGGTTA Direction: Forward Position #: 1 Overlap #: 13 Alignment: ACCAAGGAGGTTA ACCAAGGAGGTTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 23 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 23 Motif 80 Original Motif Original Motif CCCTCCCC CCCTCCCC CCCTCCCC Direction: Forward Position #: 1 Overlap #: 8 Alignment: CCCTCCCC CCCTCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 24 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 24 Motif 81 Original Motif Original Motif TGGCGGGAAADH TGGCGGGAAADH TGGCGGGAAADH Direction: Forward Position #: 1 Overlap #: 12 Alignment: TGGCGGGAAADH TGGCGGGAAADH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 25 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 25 Motif 82 Original Motif Original Motif CTCATGAATAWTYA CTCATGAATAWTYA CTCATGAATAWTYA Direction: Forward Position #: 1 Overlap #: 14 Alignment: CTCATGAATAWTYA CTCATGAATAWTYA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 26 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Motif 83 Original Motif Original Motif CTGTCAATCAC CTGTCAATCAC CTGTCAATCAC Direction: Forward Position #: 1 Overlap #: 11 Alignment: CTGTCAATCAC CTGTCAATCAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 27 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 27 Motif 84 Original Motif Original Motif CAGGTAAG CAGGTAAG CAGGTAAG Direction: Backward Position #: 1 Overlap #: 8 Alignment: CAGGTAAG CAGGTAAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 28 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 28 Motif 85 Original Motif Original Motif AGCGCCVCCTR AGCGCCVCCTR AGCGCCVCCTR Direction: Forward Position #: 1 Overlap #: 11 Alignment: AGCGCCVCCTR AGCGCCVCCTR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 29 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 29 Motif 86 Original Motif Original Motif CCTGGGAACGAGA CCTGGGAACGAGA CCTGGGAACGAGA Direction: Backward Position #: 1 Overlap #: 13 Alignment: CCTGGGAACGAGA CCTGGGAACGAGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 30 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 30 Motif 87 Original Motif Original Motif RTGACGTASD RTGACGTASD RTGACGTASD Direction: Backward Position #: 1 Overlap #: 10 Alignment: RTGACGTASD RTGACGTASD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 31 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 31 Motif 88 Original Motif Original Motif CCCACAATGC CCCACAATGC CCCACAATGC Direction: Backward Position #: 1 Overlap #: 10 Alignment: CCCACAATGC CCCACAATGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 32 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 32 Motif 89 Original Motif Original Motif AAACAAAACAA AAACAAAACAA AAACAAAACAA Direction: Backward Position #: 1 Overlap #: 11 Alignment: AAACAAAACAA AAACAAAACAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 33 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 33 Motif 90 Original Motif Original Motif AAGACAACA AAGACAACA AAGACAACA Direction: Forward Position #: 1 Overlap #: 9 Alignment: AAGACAACA AAGACAACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 34 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 34 Motif 91 Original Motif Original Motif ACATCCGGGDMMT ACATCCGGGDMMT ACATCCGGGDMMT Direction: Backward Position #: 1 Overlap #: 13 Alignment: ACATCCGGGDMMT ACATCCGGGDMMT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 35 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 35 Motif 92 Original Motif Original Motif AAAAYAAACAA AAAAYAAACAA AAAAYAAACAA Direction: Backward Position #: 1 Overlap #: 11 Alignment: AAAAYAAACAA AAAAYAAACAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 36 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 36 Motif 93 Original Motif Original Motif AATACACATCY AATACACATCY AATACACATCY Direction: Forward Position #: 1 Overlap #: 11 Alignment: AATACACATCY AATACACATCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 37 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 37 Motif 94 Original Motif Original Motif AAGGTAAACA AAGGTAAACA AAGGTAAACA Direction: Forward Position #: 1 Overlap #: 10 Alignment: AAGGTAAACA AAGGTAAACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 38 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 38 Motif 95 Original Motif Original Motif CGCCGCCA CGCCGCCA CGCCGCCA Direction: Backward Position #: 1 Overlap #: 8 Alignment: CGCCGCCA CGCCGCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 39 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 39 Motif 96 Original Motif Original Motif GAAGAAGAA GAAGAAGAA GAAGAAGAA Direction: Forward Position #: 1 Overlap #: 9 Alignment: GAAGAAGAA GAAGAAGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 40 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 40 Motif 97 Original Motif Original Motif GCCTGGTAGAGGCTA GCCTGGTAGAGGCTA GCCTGGTAGAGGCTA Direction: Backward Position #: 1 Overlap #: 15 Alignment: GCCTGGTAGAGGCTA GCCTGGTAGAGGCTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 41 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 41 Motif 98 Original Motif Original Motif AGACAATGTCGAG AGACAATGTCGAG AGACAATGTCGAG Direction: Forward Position #: 1 Overlap #: 13 Alignment: AGACAATGTCGAG AGACAATGTCGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 42 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 42 Motif 99 Original Motif Original Motif TCACGTGACC TCACGTGACC TCACGTGACC Direction: Backward Position #: 1 Overlap #: 10 Alignment: TCACGTGACC TCACGTGACC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 43 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 43 Motif 100 Original Motif Original Motif GACAGAGGGTCAGAC GACAGAGGGTCAGAC GACAGAGGGTCAGAC Direction: Backward Position #: 1 Overlap #: 15 Alignment: GACAGAGGGTCAGAC GACAGAGGGTCAGAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 44 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 44 Motif 101 Original Motif Original Motif GCTCCGCCC GCTCCGCCC GCTCCGCCC Direction: Forward Position #: 1 Overlap #: 9 Alignment: GCTCCGCCC GCTCCGCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 45 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 45 Motif 102 Original Motif Original Motif CACACACACACAC CACACACACACAC CACACACACACAC Direction: Backward Position #: 1 Overlap #: 13 Alignment: CACACACACACAC CACACACACACAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 46 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 46 Motif 103 Original Motif Original Motif ACGTCTYACATCG ACGTCTYACATCG ACGTCTYACATCG Direction: Backward Position #: 1 Overlap #: 13 Alignment: ACGTCTYACATCG ACGTCTYACATCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 47 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 47 Motif 104 Original Motif Original Motif AATAAGCTAGTT AATAAGCTAGTT AATAAGCTAGTT Direction: Forward Position #: 1 Overlap #: 12 Alignment: AATAAGCTAGTT AATAAGCTAGTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 48 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 48 Motif 105 Original Motif Original Motif CAGACRAC CAGACRAC CAGACRAC Direction: Backward Position #: 1 Overlap #: 8 Alignment: CAGACRAC CAGACRAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 49 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Motif 106 Original Motif Original Motif ATGATGATGATGAYR ATGATGATGATGAYR ATGATGATGATGAYR Direction: Forward Position #: 1 Overlap #: 15 Alignment: ATGATGATGATGAYR ATGATGATGATGAYR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 50 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 50 Motif 107 Original Motif Original Motif ACAGGTGCA ACAGGTGCA ACAGGTGCA Direction: Backward Position #: 1 Overlap #: 9 Alignment: ACAGGTGCA ACAGGTGCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 51 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 51 Motif 108 Original Motif Original Motif GACCAATCA GACCAATCA GACCAATCA Direction: Backward Position #: 1 Overlap #: 9 Alignment: GACCAATCA GACCAATCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 52 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 52 Motif 109 Original Motif Original Motif AGCTGTTTTGG AGCTGTTTTGG AGCTGTTTTGG Direction: Backward Position #: 1 Overlap #: 11 Alignment: AGCTGTTTTGG AGCTGTTTTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 53 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 53 Motif 110 Original Motif Original Motif CAGCCAATCA CAGCCAATCA CAGCCAATCA Direction: Backward Position #: 1 Overlap #: 10 Alignment: CAGCCAATCA CAGCCAATCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 54 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 54 Motif 111 Original Motif Original Motif ATGCAAAT ATGCAAAT ATGCAAAT Direction: Backward Position #: 1 Overlap #: 8 Alignment: ATGCAAAT ATGCAAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 55 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 55 Motif 112 Original Motif Original Motif ATAGTAGAAWTYGGC ATAGTAGAAWTYGGC ATAGTAGAAWTYGGC Direction: Backward Position #: 1 Overlap #: 15 Alignment: ATAGTAGAAWTYGGC ATAGTAGAAWTYGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 56 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 56 Motif 113 Original Motif Original Motif HRCTGCAGYD HRCTGCAGYD HRCTGCAGYD Direction: Forward Position #: 1 Overlap #: 10 Alignment: HRCTGCAGYD HRCTGCAGYD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 57 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 57 Motif 114 Original Motif Original Motif ACTGTTTACAAGC ACTGTTTACAAGC ACTGTTTACAAGC Direction: Forward Position #: 1 Overlap #: 13 Alignment: ACTGTTTACAAGC ACTGTTTACAAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 58 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 58 Motif 1 Original Motif Original Motif YYRRCCAATCAGAGV YYRRCCAATCAGAGV YYRRCCAATCAGAGV Direction: Forward Position #: 1 Overlap #: 15 Alignment: YYRRCCAATCAGAGV YYRRCCAATCAGAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 59 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 59 Motif 2 Original Motif Original Motif RGGTCARAGGTCA RGGTCARAGGTCA RGGTCARAGGTCA Direction: Backward Position #: 1 Overlap #: 13 Alignment: RGGTCARAGGTCA RGGTCARAGGTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 60 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 60 Motif 3 Original Motif Original Motif HCAAVATGGCGGCBV HCAAVATGGCGGCBV HCAAVATGGCGGCBV Direction: Backward Position #: 1 Overlap #: 15 Alignment: HCAAVATGGCGGCBV HCAAVATGGCGGCBV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 61 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 61 Motif 4 Original Motif Original Motif BBRTGACGTCAYVV BBRTGACGTCAYVV BBRTGACGTCAYVV Direction: Backward Position #: 1 Overlap #: 14 Alignment: BBRTGACGTCAYVV BBRTGACGTCAYVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 62 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 62 Motif 5 Original Motif Original Motif CCCCTCCCCCY CCCCTCCCCCY CCCCTCCCCCY Direction: Backward Position #: 1 Overlap #: 11 Alignment: CCCCTCCCCCY CCCCTCCCCCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 63 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 63 Motif 6 Original Motif Original Motif ATTTGCATAWHA ATTTGCATAWHA ATTTGCATAWHA Direction: Backward Position #: 1 Overlap #: 12 Alignment: ATTTGCATAWHA ATTTGCATAWHA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 64 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 64 Motif 7 Original Motif Original Motif GCATGMTGGGA GCATGMTGGGA GCATGMTGGGA Direction: Forward Position #: 1 Overlap #: 11 Alignment: GCATGMTGGGA GCATGMTGGGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 65 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 65 Motif 8 Original Motif Original Motif GTCACGTGAC GTCACGTGAC GTCACGTGAC Direction: Backward Position #: 1 Overlap #: 10 Alignment: GTCACGTGAC GTCACGTGAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 66 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 66 Motif 9 Original Motif Original Motif CCGGAAGTRA CCGGAAGTRA CCGGAAGTRA Direction: Forward Position #: 1 Overlap #: 10 Alignment: CCGGAAGTRA CCGGAAGTRA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 67 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 67 Motif 10 Original Motif Original Motif CATCTGCTTGGAGA CATCTGCTTGGAGA CATCTGCTTGGAGA Direction: Forward Position #: 1 Overlap #: 14 Alignment: CATCTGCTTGGAGA CATCTGCTTGGAGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 68 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 68 Motif 11 Original Motif Original Motif AACAATRGV AACAATRGV AACAATRGV Direction: Forward Position #: 1 Overlap #: 9 Alignment: AACAATRGV AACAATRGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 69 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 69 Motif 12 Original Motif Original Motif CGCATGCGCASTVS CGCATGCGCASTVS CGCATGCGCASTVS Direction: Forward Position #: 1 Overlap #: 14 Alignment: CGCATGCGCASTVS CGCATGCGCASTVS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 70 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 70 Motif 13 Original Motif Original Motif RVTCTCGCGAGABY RVTCTCGCGAGABY RVTCTCGCGAGABY Direction: Backward Position #: 1 Overlap #: 14 Alignment: RVTCTCGCGAGABY RVTCTCGCGAGABY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 71 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 71 Motif 14 Original Motif Original Motif AACAACAACA AACAACAACA AACAACAACA Direction: Backward Position #: 1 Overlap #: 10 Alignment: AACAACAACA AACAACAACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 72 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 72 Motif 15 Original Motif Original Motif CCATGGCAACVG CCATGGCAACVG CCATGGCAACVG Direction: Forward Position #: 1 Overlap #: 12 Alignment: CCATGGCAACVG CCATGGCAACVG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 73 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 73 Motif 16 Original Motif Original Motif TCCCGCCVW TCCCGCCVW TCCCGCCVW Direction: Forward Position #: 1 Overlap #: 9 Alignment: TCCCGCCVW TCCCGCCVW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 74 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 74 Motif 17 Original Motif Original Motif AGGTGTGAAAWV AGGTGTGAAAWV AGGTGTGAAAWV Direction: Forward Position #: 1 Overlap #: 12 Alignment: AGGTGTGAAAWV AGGTGTGAAAWV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 75 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 75 Motif 18 Original Motif Original Motif GMTAATTA GMTAATTA GMTAATTA Direction: Backward Position #: 1 Overlap #: 8 Alignment: GMTAATTA GMTAATTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 76 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 76 Motif 19 Original Motif Original Motif CCAWATWTGG CCAWATWTGG CCAWATWTGG Direction: Backward Position #: 1 Overlap #: 10 Alignment: CCAWATWTGG CCAWATWTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 77 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 77 Motif 20 Original Motif Original Motif DVTACWWGTABH DVTACWWGTABH DVTACWWGTABH Direction: Forward Position #: 1 Overlap #: 12 Alignment: DVTACWWGTABH DVTACWWGTABH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 78 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 78 Motif 21 Original Motif Original Motif GGCCACGCCC GGCCACGCCC GGCCACGCCC Direction: Backward Position #: 1 Overlap #: 10 Alignment: GGCCACGCCC GGCCACGCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 79 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 79 Motif 22 Original Motif Original Motif ACCAAGGAGGTTA ACCAAGGAGGTTA ACCAAGGAGGTTA Direction: Backward Position #: 1 Overlap #: 13 Alignment: ACCAAGGAGGTTA ACCAAGGAGGTTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 80 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 80 Motif 23 Original Motif Original Motif CCCTCCCC CCCTCCCC CCCTCCCC Direction: Forward Position #: 1 Overlap #: 8 Alignment: CCCTCCCC CCCTCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 81 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 81 Motif 24 Original Motif Original Motif TGGCGGGAAADH TGGCGGGAAADH TGGCGGGAAADH Direction: Forward Position #: 1 Overlap #: 12 Alignment: TGGCGGGAAADH TGGCGGGAAADH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 82 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 82 Motif 25 Original Motif Original Motif CTCATGAATAWTYA CTCATGAATAWTYA CTCATGAATAWTYA Direction: Backward Position #: 1 Overlap #: 14 Alignment: CTCATGAATAWTYA CTCATGAATAWTYA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 83 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 83 Motif 26 Original Motif Original Motif CTGTCAATCAC CTGTCAATCAC CTGTCAATCAC Direction: Forward Position #: 1 Overlap #: 11 Alignment: CTGTCAATCAC CTGTCAATCAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 84 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 84 Motif 27 Original Motif Original Motif CAGGTAAG CAGGTAAG CAGGTAAG Direction: Forward Position #: 1 Overlap #: 8 Alignment: CAGGTAAG CAGGTAAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 85 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 85 Motif 28 Original Motif Original Motif AGCGCCVCCTR AGCGCCVCCTR AGCGCCVCCTR Direction: Forward Position #: 1 Overlap #: 11 Alignment: AGCGCCVCCTR AGCGCCVCCTR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 86 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 86 Motif 29 Original Motif Original Motif CCTGGGAACGAGA CCTGGGAACGAGA CCTGGGAACGAGA Direction: Forward Position #: 1 Overlap #: 13 Alignment: CCTGGGAACGAGA CCTGGGAACGAGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 87 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 87 Motif 30 Original Motif Original Motif RTGACGTASD RTGACGTASD RTGACGTASD Direction: Forward Position #: 1 Overlap #: 10 Alignment: RTGACGTASD RTGACGTASD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 88 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 88 Motif 31 Original Motif Original Motif CCCACAATGC CCCACAATGC CCCACAATGC Direction: Backward Position #: 1 Overlap #: 10 Alignment: CCCACAATGC CCCACAATGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 89 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 89 Motif 32 Original Motif Original Motif AAACAAAACAA AAACAAAACAA AAACAAAACAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAACAAAACAA AAACAAAACAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 90 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 90 Motif 33 Original Motif Original Motif AAGACAACA AAGACAACA AAGACAACA Direction: Backward Position #: 1 Overlap #: 9 Alignment: AAGACAACA AAGACAACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 91 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 91 Motif 34 Original Motif Original Motif ACATCCGGGDMMT ACATCCGGGDMMT ACATCCGGGDMMT Direction: Forward Position #: 1 Overlap #: 13 Alignment: ACATCCGGGDMMT ACATCCGGGDMMT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 92 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 92 Motif 35 Original Motif Original Motif AAAAYAAACAA AAAAYAAACAA AAAAYAAACAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAAAYAAACAA AAAAYAAACAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 93 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 93 Motif 36 Original Motif Original Motif AATACACATCY AATACACATCY AATACACATCY Direction: Forward Position #: 1 Overlap #: 11 Alignment: AATACACATCY AATACACATCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 94 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 94 Motif 37 Original Motif Original Motif AAGGTAAACA AAGGTAAACA AAGGTAAACA Direction: Forward Position #: 1 Overlap #: 10 Alignment: AAGGTAAACA AAGGTAAACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 95 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 95 Motif 38 Original Motif Original Motif CGCCGCCA CGCCGCCA CGCCGCCA Direction: Backward Position #: 1 Overlap #: 8 Alignment: CGCCGCCA CGCCGCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 96 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 96 Motif 39 Original Motif Original Motif GAAGAAGAA GAAGAAGAA GAAGAAGAA Direction: Backward Position #: 1 Overlap #: 9 Alignment: GAAGAAGAA GAAGAAGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 97 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 97 Motif 40 Original Motif Original Motif GCCTGGTAGAGGCTA GCCTGGTAGAGGCTA GCCTGGTAGAGGCTA Direction: Forward Position #: 1 Overlap #: 15 Alignment: GCCTGGTAGAGGCTA GCCTGGTAGAGGCTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 98 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 98 Motif 41 Original Motif Original Motif AGACAATGTCGAG AGACAATGTCGAG AGACAATGTCGAG Direction: Backward Position #: 1 Overlap #: 13 Alignment: AGACAATGTCGAG AGACAATGTCGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 99 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 99 Motif 42 Original Motif Original Motif TCACGTGACC TCACGTGACC TCACGTGACC Direction: Forward Position #: 1 Overlap #: 10 Alignment: TCACGTGACC TCACGTGACC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 100 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 100 Motif 43 Original Motif Original Motif GACAGAGGGTCAGAC GACAGAGGGTCAGAC GACAGAGGGTCAGAC Direction: Backward Position #: 1 Overlap #: 15 Alignment: GACAGAGGGTCAGAC GACAGAGGGTCAGAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 101 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 101 Motif 44 Original Motif Original Motif GCTCCGCCC GCTCCGCCC GCTCCGCCC Direction: Forward Position #: 1 Overlap #: 9 Alignment: GCTCCGCCC GCTCCGCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 102 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 102 Motif 45 Original Motif Original Motif CACACACACACAC CACACACACACAC CACACACACACAC Direction: Backward Position #: 1 Overlap #: 13 Alignment: CACACACACACAC CACACACACACAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 103 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 103 Motif 46 Original Motif Original Motif ACGTCTYACATCG ACGTCTYACATCG ACGTCTYACATCG Direction: Backward Position #: 1 Overlap #: 13 Alignment: ACGTCTYACATCG ACGTCTYACATCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 104 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 104 Motif 47 Original Motif Original Motif AATAAGCTAGTT AATAAGCTAGTT AATAAGCTAGTT Direction: Backward Position #: 1 Overlap #: 12 Alignment: AATAAGCTAGTT AATAAGCTAGTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 105 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 105 Motif 48 Original Motif Original Motif CAGACRAC CAGACRAC CAGACRAC Direction: Backward Position #: 1 Overlap #: 8 Alignment: CAGACRAC CAGACRAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 106 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 106 Motif 49 Original Motif Original Motif ATGATGATGATGAYR ATGATGATGATGAYR ATGATGATGATGAYR Direction: Forward Position #: 1 Overlap #: 15 Alignment: ATGATGATGATGAYR ATGATGATGATGAYR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 107 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 107 Motif 50 Original Motif Original Motif ACAGGTGCA ACAGGTGCA ACAGGTGCA Direction: Backward Position #: 1 Overlap #: 9 Alignment: ACAGGTGCA ACAGGTGCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 108 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 108 Motif 51 Original Motif Original Motif GACCAATCA GACCAATCA GACCAATCA Direction: Forward Position #: 1 Overlap #: 9 Alignment: GACCAATCA GACCAATCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 109 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 109 Motif 52 Original Motif Original Motif AGCTGTTTTGG AGCTGTTTTGG AGCTGTTTTGG Direction: Forward Position #: 1 Overlap #: 11 Alignment: AGCTGTTTTGG AGCTGTTTTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 110 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 110 Motif 53 Original Motif Original Motif CAGCCAATCA CAGCCAATCA CAGCCAATCA Direction: Forward Position #: 1 Overlap #: 10 Alignment: CAGCCAATCA CAGCCAATCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 111 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 111 Motif 54 Original Motif Original Motif ATGCAAAT ATGCAAAT ATGCAAAT Direction: Backward Position #: 1 Overlap #: 8 Alignment: ATGCAAAT ATGCAAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 112 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 112 Motif 55 Original Motif Original Motif ATAGTAGAAWTYGGC ATAGTAGAAWTYGGC ATAGTAGAAWTYGGC Direction: Backward Position #: 1 Overlap #: 15 Alignment: ATAGTAGAAWTYGGC ATAGTAGAAWTYGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 113 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 113 Motif 56 Original Motif Original Motif HRCTGCAGYD HRCTGCAGYD HRCTGCAGYD Direction: Forward Position #: 1 Overlap #: 10 Alignment: HRCTGCAGYD HRCTGCAGYD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 114 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 114 Motif 57 Original Motif Original Motif ACTGTTTACAAGC ACTGTTTACAAGC ACTGTTTACAAGC Direction: Backward Position #: 1 Overlap #: 13 Alignment: ACTGTTTACAAGC ACTGTTTACAAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 11-21-2023 16:21:43 Runtime: 3497.06 seconds MOTIFSIM is written by Ngoc Tam L. 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