**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 2 Number of top significant motifs: 1 Number of best matches: 1 Similarity cutoff: >= 0.75 Matching motif database: Jaspar Core Motif tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # U20231121_R_11-21-23_1450_InsertFile1.txt 57 1 U20231121_R_11-21-23_1450_InsertFile2.txt 57 2 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 72 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 72 Motif 15 Original Motif Original Motif CCATGGCAACVG CCATGGCAACVG CCATGGCAACVG Direction: Forward Position #: 1 Overlap #: 12 Alignment: CCATGGCAACVG CCATGGCAACVG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 11-21-2023 16:21:43 Runtime: 3497.06 seconds MOTIFSIM is written by Ngoc Tam L. Tran