**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 2 Number of top significant motifs: 1 Number of best matches: 1 Similarity cutoff: >= 0.75 Matching motif database: Jaspar Core Motif tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # U20231121_R_11-21-23_1450_InsertFile1.txt 57 1 U20231121_R_11-21-23_1450_InsertFile2.txt 57 2 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ********************************************************************** Best Matches in Database for Each Motif (Highest to Lowest) ***************************************************************** Dataset #: 1 Motif ID: 1 Motif name: Motif 1 Consensus sequence (original motif): YYRRCCAATCAGAGV Consensus sequence (reverse complement motif): VCTCTGATTGGKKKM ************************************************************************ Best Matches for Motif ID 1 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0060.2 NFYA Reverse Complement Original Motif Backward 1 15 0.0229578 Taxon: Vertebrates Consensus sequence (original motif): AGVSYKCTGATTGGTBVR Consensus sequence (reverse complement motif): KVBACCAATCAGYMSBCT Alignment: KVBACCAATCAGYMSBCT ---VCTCTGATTGGKKKM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 2 Motif name: Motif 2 Consensus sequence (original motif): RGGTCARAGGTCA Consensus sequence (reverse complement motif): TGACCTKTGACCK ************************************************************************ Best Matches for Motif ID 2 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0677.1 Nr2f6 Original Motif Original Motif Backward 1 13 0 Taxon: Vertebrates Consensus sequence (original motif): VRGGTCAAAGGTCA Consensus sequence (reverse complement motif): TGACCTTTGACCKV Alignment: VRGGTCAAAGGTCA -RGGTCARAGGTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 3 Motif name: Motif 3 Consensus sequence (original motif): HCAAVATGGCGGCBV Consensus sequence (reverse complement motif): VBGCCGCCATVTTGD ************************************************************************ Best Matches for Motif ID 3 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0570.1 ABF1 Original Motif Original Motif Backward 4 15 0.0784137 Taxon: Plants Consensus sequence (original motif): GGMCACGTGGCVCRVVVGV Consensus sequence (reverse complement motif): VCVVBMGBGCCACGTGYCC Alignment: GGMCACGTGGCVCRVVVGV -HCAAVATGGCGGCBV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 4 Motif name: Motif 4 Consensus sequence (original motif): BBRTGACGTCAYVV Consensus sequence (reverse complement motif): VVMTGACGTCAKBB ************************************************************************ Best Matches for Motif ID 4 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0834.1 ATF7 Original Motif Original Motif Forward 1 14 0.0169411 Taxon: Vertebrates Consensus sequence (original motif): BDATGACGTCATHV Consensus sequence (reverse complement motif): VDATGACGTCATHB Alignment: BDATGACGTCATHV BBRTGACGTCAYVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 5 Motif name: Motif 5 Consensus sequence (original motif): CCCCTCCCCCY Consensus sequence (reverse complement motif): KGGGGGAGGGG ************************************************************************ Best Matches for Motif ID 5 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0516.1 SP2 Original Motif Original Motif Forward 2 11 0.0384687 Taxon: Vertebrates Consensus sequence (original motif): GYCCCGCCYCYBBBB Consensus sequence (reverse complement motif): BBBVKGKGGCGGGKC Alignment: GYCCCGCCYCYBBBB -CCCCTCCCCCY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 6 Motif name: Motif 6 Consensus sequence (original motif): ATTTGCATAWHA Consensus sequence (reverse complement motif): TDWTATGCAAAT ************************************************************************ Best Matches for Motif ID 6 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0627.1 Pou2f3 Original Motif Reverse Complement Forward 5 12 0.0149217 Taxon: Vertebrates Consensus sequence (original motif): BHDTATGCAAATBHDV Consensus sequence (reverse complement motif): BHHVATTTGCATAHHV Alignment: BHHVATTTGCATAHHV ----ATTTGCATAWHA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 7 Motif name: Motif 7 Consensus sequence (original motif): GCATGMTGGGA Consensus sequence (reverse complement motif): TCCCARCATGC ************************************************************************ Best Matches for Motif ID 7 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0088.2 ZNF143 Original Motif Reverse Complement Backward 2 11 0.0572813 Taxon: Vertebrates Consensus sequence (original motif): TWCCCAYAATGCAYYG Consensus sequence (reverse complement motif): CMMTGCATTKTGGGWA Alignment: CMMTGCATTKTGGGWA ----GCATGMTGGGA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 8 Motif name: Motif 8 Consensus sequence (original motif): GTCACGTGAC Consensus sequence (reverse complement motif): GTCACGTGAC ************************************************************************ Best Matches for Motif ID 8 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0636.1 BHLHE41 Original Motif Original Motif Forward 1 10 0.00818767 Taxon: Vertebrates Consensus sequence (original motif): RTCACGTGAC Consensus sequence (reverse complement motif): GTCACGTGAM Alignment: RTCACGTGAC GTCACGTGAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 9 Motif name: Motif 9 Consensus sequence (original motif): CCGGAAGTRA Consensus sequence (reverse complement motif): TMACTTCCGG ************************************************************************ Best Matches for Motif ID 9 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0640.1 ELF3 Original Motif Original Motif Forward 4 10 0.0120558 Taxon: Vertebrates Consensus sequence (original motif): WACCCGGAAGTAD Consensus sequence (reverse complement motif): DTACTTCCGGGTW Alignment: WACCCGGAAGTAD ---CCGGAAGTRA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 10 Motif name: Motif 10 Consensus sequence (original motif): CATCTGCTTGGAGA Consensus sequence (reverse complement motif): TCTCCAAGCAGATG ************************************************************************ Best Matches for Motif ID 10 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0060.2 NFYA Original Motif Original Motif Backward 2 14 0.0479869 Taxon: Vertebrates Consensus sequence (original motif): AGVSYKCTGATTGGTBVR Consensus sequence (reverse complement motif): KVBACCAATCAGYMSBCT Alignment: AGVSYKCTGATTGGTBVR ---CATCTGCTTGGAGA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 11 Motif name: Motif 11 Consensus sequence (original motif): AACAATRGV Consensus sequence (reverse complement motif): VCKATTGTT ************************************************************************ Best Matches for Motif ID 11 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0445.1 D Original Motif Reverse Complement Backward 1 9 0.0214352 Taxon: Insects Consensus sequence (original motif): BCYATTGTTBT Consensus sequence (reverse complement motif): ABAACAATKGV Alignment: ABAACAATKGV --AACAATRGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 12 Motif name: Motif 12 Consensus sequence (original motif): CGCATGCGCASTVS Consensus sequence (reverse complement motif): SVASTGCGCATGCG ************************************************************************ Best Matches for Motif ID 12 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0376.1 RTG3 Reverse Complement Original Motif Backward 6 14 0.0498099 Taxon: Fungi Consensus sequence (original motif): VDVBDAGCACGTGCBBDVWH Consensus sequence (reverse complement motif): DWVDVVGCACGTGCTDVBDB Alignment: VDVBDAGCACGTGCBBDVWH -SVASTGCGCATGCG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 13 Motif name: Motif 13 Consensus sequence (original motif): RVTCTCGCGAGABY Consensus sequence (reverse complement motif): MVTCTCGCGAGABK ************************************************************************ Best Matches for Motif ID 13 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0154.3 EBF1 Reverse Complement Reverse Complement Forward 1 14 0.0477452 Taxon: Vertebrates Consensus sequence (original motif): ABTCCCHWGGGAMT Consensus sequence (reverse complement motif): AYTCCCWHGGGAVT Alignment: AYTCCCWHGGGAVT MVTCTCGCGAGABK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 14 Motif name: Motif 14 Consensus sequence (original motif): AACAACAACA Consensus sequence (reverse complement motif): TGTTGTTGTT ************************************************************************ Best Matches for Motif ID 14 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0870.1 Sox1 Reverse Complement Reverse Complement Backward 1 10 0.0597499 Taxon: Vertebrates Consensus sequence (original motif): AACAATAVCATTGTT Consensus sequence (reverse complement motif): AACAATGBTATTGTT Alignment: AACAATGBTATTGTT -----TGTTGTTGTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 15 Motif name: Motif 15 Consensus sequence (original motif): CCATGGCAACVG Consensus sequence (reverse complement motif): CVGTTGCCATGG ************************************************************************ Best Matches for Motif ID 15 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0138.2 REST Reverse Complement Reverse Complement Backward 8 12 0.0637808 Taxon: Vertebrates Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: GGYGCTGTCCATGGTGCTGAA --CVGTTGCCATGG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 16 Motif name: Motif 16 Consensus sequence (original motif): TCCCGCCVW Consensus sequence (reverse complement motif): WBGGCGGGA ************************************************************************ Best Matches for Motif ID 16 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0758.1 E2F7 Reverse Complement Reverse Complement Backward 4 9 0.0204536 Taxon: Vertebrates Consensus sequence (original motif): TTTTCCCGCCAAAA Consensus sequence (reverse complement motif): TTTTGGCGGGAAAA Alignment: TTTTGGCGGGAAAA --WBGGCGGGA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 17 Motif name: Motif 17 Consensus sequence (original motif): AGGTGTGAAAWV Consensus sequence (reverse complement motif): BWTTTCACACCT ************************************************************************ Best Matches for Motif ID 17 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0800.1 EOMES Reverse Complement Reverse Complement Backward 2 12 0.0126084 Taxon: Vertebrates Consensus sequence (original motif): DAGGTGTGAAHDH Consensus sequence (reverse complement motif): HDHTTCACACCTD Alignment: HDHTTCACACCTD BWTTTCACACCT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 18 Motif name: Motif 18 Consensus sequence (original motif): GMTAATTA Consensus sequence (reverse complement motif): TAATTAYC ************************************************************************ Best Matches for Motif ID 18 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0904.1 Hoxb5 Reverse Complement Reverse Complement Forward 7 8 0.0176518 Taxon: Vertebrates Consensus sequence (original motif): AHGBTAATTAVCHHAH Consensus sequence (reverse complement motif): HTDHGVTAATTABCDT Alignment: HTDHGVTAATTABCDT ------TAATTAYC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 19 Motif name: Motif 19 Consensus sequence (original motif): CCAWATWTGG Consensus sequence (reverse complement motif): CCAWATWTGG ************************************************************************ Best Matches for Motif ID 19 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0083.3 SRF Original Motif Original Motif Forward 4 10 0 Taxon: Vertebrates Consensus sequence (original motif): TGMCCATATATGGKCA Consensus sequence (reverse complement motif): TGRCCATATATGGYCA Alignment: TGMCCATATATGGKCA ---CCAWATWTGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 20 Motif name: Motif 20 Consensus sequence (original motif): DVTACWWGTABH Consensus sequence (reverse complement motif): HBTACWWGTAVD ************************************************************************ Best Matches for Motif ID 20 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0941.1 ABF2 Reverse Complement Reverse Complement Forward 1 12 0.0341371 Taxon: Plants Consensus sequence (original motif): BDBDACACGTGDB Consensus sequence (reverse complement motif): DDCACGTGTHHBB Alignment: DDCACGTGTHHBB HBTACWWGTAVD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 21 Motif name: Motif 21 Consensus sequence (original motif): GGCCACGCCC Consensus sequence (reverse complement motif): GGGCGTGGCC ************************************************************************ Best Matches for Motif ID 21 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0742.1 Klf12 Original Motif Original Motif Forward 1 10 0 Taxon: Vertebrates Consensus sequence (original motif): GRCCACGCCCWHHHH Consensus sequence (reverse complement motif): HHHHWGGGCGTGGKC Alignment: GRCCACGCCCWHHHH GGCCACGCCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 22 Motif name: Motif 22 Consensus sequence (original motif): ACCAAGGAGGTTA Consensus sequence (reverse complement motif): TAACCTCCTTGGT ************************************************************************ Best Matches for Motif ID 22 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0308.1 GSM1 Original Motif Reverse Complement Forward 4 13 0.0653916 Taxon: Fungi Consensus sequence (original motif): HBHDDDWADCTCCGGAVBDDH Consensus sequence (reverse complement motif): HDDVVTCCGGAGDTWDDDHVH Alignment: HDDVVTCCGGAGDTWDDDHVH ---ACCAAGGAGGTTA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 23 Motif name: Motif 23 Consensus sequence (original motif): CCCTCCCC Consensus sequence (reverse complement motif): GGGGAGGG ************************************************************************ Best Matches for Motif ID 23 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0079.3 SP1 Original Motif Original Motif Backward 2 8 0.0246016 Taxon: Vertebrates Consensus sequence (original motif): BCCCCKCCCCC Consensus sequence (reverse complement motif): GGGGGYGGGGB Alignment: BCCCCKCCCCC --CCCTCCCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 24 Motif name: Motif 24 Consensus sequence (original motif): TGGCGGGAAADH Consensus sequence (reverse complement motif): HDTTTCCCGCCA ************************************************************************ Best Matches for Motif ID 24 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0541.1 efl-1 Original Motif Original Motif Forward 4 12 0.0282826 Taxon: Nematodes Consensus sequence (original motif): HDHDSGCGSGAAAWT Consensus sequence (reverse complement motif): AWTTTCSCGCSHDHD Alignment: HDHDSGCGSGAAAWT ---TGGCGGGAAADH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 25 Motif name: Motif 25 Consensus sequence (original motif): CTCATGAATAWTYA Consensus sequence (reverse complement motif): TMAWTATTCATGAG ************************************************************************ Best Matches for Motif ID 25 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0791.1 POU4F3 Reverse Complement Original Motif Backward 1 14 0.0563832 Taxon: Vertebrates Consensus sequence (original motif): DTGMATWATTAATGHV Consensus sequence (reverse complement motif): VHCATTAATWATRCAD Alignment: VHCATTAATWATRCAD --TMAWTATTCATGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 26 Motif name: Motif 26 Consensus sequence (original motif): CTGTCAATCAC Consensus sequence (reverse complement motif): GTGATTGACAG ************************************************************************ Best Matches for Motif ID 26 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0070.1 PBX1 Reverse Complement Reverse Complement Backward 1 11 0.0642241 Taxon: Vertebrates Consensus sequence (original motif): HBATCAATCAAW Consensus sequence (reverse complement motif): WTTGATTGATBD Alignment: WTTGATTGATBD -GTGATTGACAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 27 Motif name: Motif 27 Consensus sequence (original motif): CAGGTAAG Consensus sequence (reverse complement motif): CTTACCTG ************************************************************************ Best Matches for Motif ID 27 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0103.2 ZEB1 Original Motif Reverse Complement Forward 1 8 0.00667179 Taxon: Vertebrates Consensus sequence (original motif): VCWCACCTG Consensus sequence (reverse complement motif): CAGGTGWGV Alignment: CAGGTGWGV CAGGTAAG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 28 Motif name: Motif 28 Consensus sequence (original motif): AGCGCCVCCTR Consensus sequence (reverse complement motif): KAGGVGGCGCT ************************************************************************ Best Matches for Motif ID 28 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0531.1 CTCF Reverse Complement Original Motif Forward 5 11 0.0422441 Taxon: Insects Consensus sequence (original motif): BCVMYAGRTGGCGCY Consensus sequence (reverse complement motif): KGCGCCAKCTMRVGB Alignment: BCVMYAGRTGGCGCY ----KAGGVGGCGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 29 Motif name: Motif 29 Consensus sequence (original motif): CCTGGGAACGAGA Consensus sequence (reverse complement motif): TCTCGTTCCCAGG ************************************************************************ Best Matches for Motif ID 29 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0085.1 Su(H) Original Motif Original Motif Backward 3 13 0.0866213 Taxon: Insects Consensus sequence (original motif): BYGTGGGAAMCBDDVD Consensus sequence (reverse complement motif): DBHBBGYTTCCCACMB Alignment: BYGTGGGAAMCBDDVD -CCTGGGAACGAGA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 30 Motif name: Motif 30 Consensus sequence (original motif): RTGACGTASD Consensus sequence (reverse complement motif): DSTACGTCAK ************************************************************************ Best Matches for Motif ID 30 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0097.1 bZIP911 Reverse Complement Reverse Complement Backward 2 10 0.0406054 Taxon: Plants Consensus sequence (original motif): GRTGACGTGGMC Consensus sequence (reverse complement motif): GRCCACGTCAKC Alignment: GRCCACGTCAKC -DSTACGTCAK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 31 Motif name: Motif 31 Consensus sequence (original motif): CCCACAATGC Consensus sequence (reverse complement motif): GCATTGTGGG ************************************************************************ Best Matches for Motif ID 31 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0088.2 ZNF143 Original Motif Original Motif Backward 5 10 0.0155351 Taxon: Vertebrates Consensus sequence (original motif): TWCCCAYAATGCAYYG Consensus sequence (reverse complement motif): CMMTGCATTKTGGGWA Alignment: TWCCCAYAATGCAYYG --CCCACAATGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 32 Motif name: Motif 32 Consensus sequence (original motif): AAACAAAACAA Consensus sequence (reverse complement motif): TTGTTTTGTTT ************************************************************************ Best Matches for Motif ID 32 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0296.1 FKH1 Reverse Complement Reverse Complement Backward 9 11 0.0515149 Taxon: Fungi Consensus sequence (original motif): BDWWWTGTAAACAAAVDDDV Consensus sequence (reverse complement motif): BHHDVTTTGTTTACAWWWHV Alignment: BHHDVTTTGTTTACAWWWHV -TTGTTTTGTTT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 33 Motif name: Motif 33 Consensus sequence (original motif): AAGACAACA Consensus sequence (reverse complement motif): TGTTGTCTT ************************************************************************ Best Matches for Motif ID 33 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0029.1 Mecom Original Motif Original Motif Backward 1 9 0.0220224 Taxon: Vertebrates Consensus sequence (original motif): AAGAYAAGATAABA Consensus sequence (reverse complement motif): TBTTATCTTMTCTT Alignment: AAGAYAAGATAABA -----AAGACAACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 34 Motif name: Motif 34 Consensus sequence (original motif): ACATCCGGGDMMT Consensus sequence (reverse complement motif): ARRDCCCGGATGT ************************************************************************ Best Matches for Motif ID 34 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0308.1 GSM1 Reverse Complement Reverse Complement Backward 8 13 0.0730858 Taxon: Fungi Consensus sequence (original motif): HBHDDDWADCTCCGGAVBDDH Consensus sequence (reverse complement motif): HDDVVTCCGGAGDTWDDDHVH Alignment: HDDVVTCCGGAGDTWDDDHVH -ARRDCCCGGATGT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 35 Motif name: Motif 35 Consensus sequence (original motif): AAAAYAAACAA Consensus sequence (reverse complement motif): TTGTTTKTTTT ************************************************************************ Best Matches for Motif ID 35 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0481.1 FOXP1 Original Motif Original Motif Forward 3 11 0.0452708 Taxon: Vertebrates Consensus sequence (original motif): HHDADGTAAACAAAV Consensus sequence (reverse complement motif): VTTTGTTTACDTDHD Alignment: HHDADGTAAACAAAV --AAAAYAAACAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 36 Motif name: Motif 36 Consensus sequence (original motif): AATACACATCY Consensus sequence (reverse complement motif): MGATGTGTATT ************************************************************************ Best Matches for Motif ID 36 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0040.1 Foxq1 Original Motif Reverse Complement Forward 1 11 0.0480007 Taxon: Vertebrates Consensus sequence (original motif): HATTGTTTATW Consensus sequence (reverse complement motif): WATAAACAATH Alignment: HATTGTTTATW AATACACATCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 37 Motif name: Motif 37 Consensus sequence (original motif): AAGGTAAACA Consensus sequence (reverse complement motif): TGTTTACCTT ************************************************************************ Best Matches for Motif ID 37 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0852.1 Foxk1 Original Motif Original Motif Forward 3 10 0.0286025 Taxon: Vertebrates Consensus sequence (original motif): DDAATGTAAACAAAVVB Consensus sequence (reverse complement motif): BBVTTTGTTTACATTDD Alignment: DDAATGTAAACAAAVVB --AAGGTAAACA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 38 Motif name: Motif 38 Consensus sequence (original motif): CGCCGCCA Consensus sequence (reverse complement motif): TGGCGGCG ************************************************************************ Best Matches for Motif ID 38 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA1034.1 Os05g0497200 Original Motif Original Motif Backward 1 8 0.00831137 Taxon: Plants Consensus sequence (original motif): CGSCGCCR Consensus sequence (reverse complement motif): KGGCGSCG Alignment: CGSCGCCR CGCCGCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 39 Motif name: Motif 39 Consensus sequence (original motif): GAAGAAGAA Consensus sequence (reverse complement motif): TTCTTCTTC ************************************************************************ Best Matches for Motif ID 39 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0377.1 SFL1 Reverse Complement Reverse Complement Forward 4 9 0.034731 Taxon: Fungi Consensus sequence (original motif): HHVHDHATMGAAGAAAHDWDW Consensus sequence (reverse complement motif): WDWDHTTTCTTCYATHHHVHH Alignment: WDWDHTTTCTTCYATHHHVHH ---TTCTTCTTC--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 40 Motif name: Motif 40 Consensus sequence (original motif): GCCTGGTAGAGGCTA Consensus sequence (reverse complement motif): TAGCCTCTACCAGGC ************************************************************************ Best Matches for Motif ID 40 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0139.1 CTCF Original Motif Reverse Complement Backward 1 15 0.0871174 Taxon: Vertebrates Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM Alignment: YDRCCASYAGRKGGCRSYV ----GCCTGGTAGAGGCTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 41 Motif name: Motif 41 Consensus sequence (original motif): AGACAATGTCGAG Consensus sequence (reverse complement motif): CTCGACATTGTCT ************************************************************************ Best Matches for Motif ID 41 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0114.3 Hnf4a Reverse Complement Reverse Complement Forward 2 13 0.0795723 Taxon: Vertebrates Consensus sequence (original motif): RGGGTCAAAGTCCAVH Consensus sequence (reverse complement motif): HBTGGACTTTGACCCM Alignment: HBTGGACTTTGACCCM -CTCGACATTGTCT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 42 Motif name: Motif 42 Consensus sequence (original motif): TCACGTGACC Consensus sequence (reverse complement motif): GGTCACGTGA ************************************************************************ Best Matches for Motif ID 42 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0093.2 USF1 Original Motif Original Motif Backward 1 10 0.0323214 Taxon: Vertebrates Consensus sequence (original motif): VBCAYGTGACC Consensus sequence (reverse complement motif): GGTCACKTGBV Alignment: VBCAYGTGACC -TCACGTGACC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 43 Motif name: Motif 43 Consensus sequence (original motif): GACAGAGGGTCAGAC Consensus sequence (reverse complement motif): GTCTGACCCTCTGTC ************************************************************************ Best Matches for Motif ID 43 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0729.1 RARA Original Motif Original Motif Backward 1 15 0.0856351 Taxon: Vertebrates Consensus sequence (original motif): GAGGTCAAAAGGTCAAKK Consensus sequence (reverse complement motif): YRTTGACCTTTTGACCTC Alignment: GAGGTCAAAAGGTCAAKK ---GACAGAGGGTCAGAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 44 Motif name: Motif 44 Consensus sequence (original motif): GCTCCGCCC Consensus sequence (reverse complement motif): GGGCGGAGC ************************************************************************ Best Matches for Motif ID 44 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0685.1 SP4 Original Motif Original Motif Backward 6 9 0.0231825 Taxon: Vertebrates Consensus sequence (original motif): BWRGCCACGCCCMCTYH Consensus sequence (reverse complement motif): HMAGRGGGCGTGGCKWV Alignment: BWRGCCACGCCCMCTYH ---GCTCCGCCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 45 Motif name: Motif 45 Consensus sequence (original motif): CACACACACACAC Consensus sequence (reverse complement motif): GTGTGTGTGTGTG ************************************************************************ Best Matches for Motif ID 45 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0538.1 daf-12 Reverse Complement Original Motif Forward 1 13 0.0427041 Taxon: Nematodes Consensus sequence (original motif): GWGYGTGTGTGYGTB Consensus sequence (reverse complement motif): BACKCACACACMCWC Alignment: BACKCACACACMCWC GTGTGTGTGTGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 46 Motif name: Motif 46 Consensus sequence (original motif): ACGTCTYACATCG Consensus sequence (reverse complement motif): CGATGTMAGACGT ************************************************************************ Best Matches for Motif ID 46 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0513.1 SMAD2::SMAD3::SMAD4Reverse Complement Reverse Complement Forward 1 13 0.0949021 Taxon: Vertebrates Consensus sequence (original motif): VTGTCTGDCACCT Consensus sequence (reverse complement motif): AGGTGDCAGACAV Alignment: AGGTGDCAGACAV CGATGTMAGACGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 47 Motif name: Motif 47 Consensus sequence (original motif): AATAAGCTAGTT Consensus sequence (reverse complement motif): AACTAGCTTATT ************************************************************************ Best Matches for Motif ID 47 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0788.1 POU3F3 Original Motif Original Motif Backward 2 12 0.0583819 Taxon: Vertebrates Consensus sequence (original motif): WWTATGCWAATTW Consensus sequence (reverse complement motif): WAATTWGCATAWW Alignment: WWTATGCWAATTW AATAAGCTAGTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 48 Motif name: Motif 48 Consensus sequence (original motif): CAGACRAC Consensus sequence (reverse complement motif): GTKGTCTG ************************************************************************ Best Matches for Motif ID 48 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0925.1 sma-4 Original Motif Reverse Complement Backward 1 8 0.0307066 Taxon: Nematodes Consensus sequence (original motif): DVTGTCTGGVB Consensus sequence (reverse complement motif): BBCCAGACAVB Alignment: DVTGTCTGGVB ---CAGACRAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 49 Motif name: Motif 49 Consensus sequence (original motif): ATGATGATGATGAYR Consensus sequence (reverse complement motif): MMTCATCATCATCAT ************************************************************************ Best Matches for Motif ID 49 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0547.1 skn-1 Original Motif Original Motif Forward 1 15 0.0545893 Taxon: Nematodes Consensus sequence (original motif): AAAATGATGACAAWD Consensus sequence (reverse complement motif): DWTTGTCATCATTTT Alignment: AAAATGATGACAAWD ATGATGATGATGAYR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 50 Motif name: Motif 50 Consensus sequence (original motif): ACAGGTGCA Consensus sequence (reverse complement motif): TGCACCTGT ************************************************************************ Best Matches for Motif ID 50 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0824.1 ID4 Reverse Complement Original Motif Backward 2 9 0.0401018 Taxon: Vertebrates Consensus sequence (original motif): DRCACCTGBH Consensus sequence (reverse complement motif): DVCAGGTGKD Alignment: DRCACCTGBH TGCACCTGT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 51 Motif name: Motif 51 Consensus sequence (original motif): GACCAATCA Consensus sequence (reverse complement motif): TGATTGGTC ************************************************************************ Best Matches for Motif ID 51 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0060.2 NFYA Reverse Complement Original Motif Backward 3 9 0.0180131 Taxon: Vertebrates Consensus sequence (original motif): AGVSYKCTGATTGGTBVR Consensus sequence (reverse complement motif): KVBACCAATCAGYMSBCT Alignment: AGVSYKCTGATTGGTBVR -------TGATTGGTC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 52 Motif name: Motif 52 Consensus sequence (original motif): AGCTGTTTTGG Consensus sequence (reverse complement motif): CCAAAACAGCT ************************************************************************ Best Matches for Motif ID 52 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0073.1 RREB1 Reverse Complement Original Motif Forward 3 11 0.0758389 Taxon: Vertebrates Consensus sequence (original motif): CCCCMAAMCAMCCMCMMMCV Consensus sequence (reverse complement motif): BGRRRGRGGRTGRTTYGGGG Alignment: CCCCMAAMCAMCCMCMMMCV --CCAAAACAGCT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 53 Motif name: Motif 53 Consensus sequence (original motif): CAGCCAATCA Consensus sequence (reverse complement motif): TGATTGGCTG ************************************************************************ Best Matches for Motif ID 53 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0314.1 HAP3 Reverse Complement Original Motif Forward 3 10 0.0179107 Taxon: Fungi Consensus sequence (original motif): TCTSATTGGYYVRRA Consensus sequence (reverse complement motif): TMKVMMCCAATSAGA Alignment: TCTSATTGGYYVRRA --TGATTGGCTG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 54 Motif name: Motif 54 Consensus sequence (original motif): ATGCAAAT Consensus sequence (reverse complement motif): ATTTGCAT ************************************************************************ Best Matches for Motif ID 54 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0507.1 POU2F2 Original Motif Reverse Complement Backward 4 8 0.00743635 Taxon: Vertebrates Consensus sequence (original motif): HDHATTTGCATRT Consensus sequence (reverse complement motif): AKATGCAAATDDH Alignment: AKATGCAAATDDH --ATGCAAAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 55 Motif name: Motif 55 Consensus sequence (original motif): ATAGTAGAAWTYGGC Consensus sequence (reverse complement motif): GCCKAWTTCTACTAT ************************************************************************ Best Matches for Motif ID 55 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0377.1 SFL1 Reverse Complement Reverse Complement Backward 7 15 0.0860145 Taxon: Fungi Consensus sequence (original motif): HHVHDHATMGAAGAAAHDWDW Consensus sequence (reverse complement motif): WDWDHTTTCTTCYATHHHVHH Alignment: WDWDHTTTCTTCYATHHHVHH GCCKAWTTCTACTAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 56 Motif name: Motif 56 Consensus sequence (original motif): HRCTGCAGYD Consensus sequence (reverse complement motif): DMCTGCAGKH ************************************************************************ Best Matches for Motif ID 56 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0355.1 PHD1 Original Motif Reverse Complement Forward 1 10 0.00587276 Taxon: Fungi Consensus sequence (original motif): VSMTGCABVV Consensus sequence (reverse complement motif): BVBTGCARSB Alignment: BVBTGCARSB HRCTGCAGYD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 57 Motif name: Motif 57 Consensus sequence (original motif): ACTGTTTACAAGC Consensus sequence (reverse complement motif): GCTTGTAAACAGT ************************************************************************ Best Matches for Motif ID 57 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0296.1 FKH1 Original Motif Reverse Complement Backward 3 13 0.0709953 Taxon: Fungi Consensus sequence (original motif): BDWWWTGTAAACAAAVDDDV Consensus sequence (reverse complement motif): BHHDVTTTGTTTACAWWWHV Alignment: BHHDVTTTGTTTACAWWWHV -----ACTGTTTACAAGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 58 Motif name: Motif 58 Consensus sequence (original motif): YYRRCCAATCAGAGV Consensus sequence (reverse complement motif): VCTCTGATTGGKKKM ************************************************************************ Best Matches for Motif ID 58 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0060.2 NFYA Reverse Complement Original Motif Forward 4 15 0.0229578 Taxon: Vertebrates Consensus sequence (original motif): AGVSYKCTGATTGGTBVR Consensus sequence (reverse complement motif): KVBACCAATCAGYMSBCT Alignment: AGVSYKCTGATTGGTBVR ---VCTCTGATTGGKKKM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 59 Motif name: Motif 59 Consensus sequence (original motif): RGGTCARAGGTCA Consensus sequence (reverse complement motif): TGACCTKTGACCK ************************************************************************ Best Matches for Motif ID 59 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0677.1 Nr2f6 Reverse Complement Reverse Complement Forward 1 13 0 Taxon: Vertebrates Consensus sequence (original motif): VRGGTCAAAGGTCA Consensus sequence (reverse complement motif): TGACCTTTGACCKV Alignment: TGACCTTTGACCKV TGACCTKTGACCK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 60 Motif name: Motif 60 Consensus sequence (original motif): HCAAVATGGCGGCBV Consensus sequence (reverse complement motif): VBGCCGCCATVTTGD ************************************************************************ Best Matches for Motif ID 60 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0570.1 ABF1 Original Motif Original Motif Backward 4 15 0.0784137 Taxon: Plants Consensus sequence (original motif): GGMCACGTGGCVCRVVVGV Consensus sequence (reverse complement motif): VCVVBMGBGCCACGTGYCC Alignment: GGMCACGTGGCVCRVVVGV -HCAAVATGGCGGCBV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 61 Motif name: Motif 61 Consensus sequence (original motif): BBRTGACGTCAYVV Consensus sequence (reverse complement motif): VVMTGACGTCAKBB ************************************************************************ Best Matches for Motif ID 61 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0834.1 ATF7 Original Motif Original Motif Forward 1 14 0.0169411 Taxon: Vertebrates Consensus sequence (original motif): BDATGACGTCATHV Consensus sequence (reverse complement motif): VDATGACGTCATHB Alignment: BDATGACGTCATHV BBRTGACGTCAYVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 62 Motif name: Motif 62 Consensus sequence (original motif): CCCCTCCCCCY Consensus sequence (reverse complement motif): KGGGGGAGGGG ************************************************************************ Best Matches for Motif ID 62 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0516.1 SP2 Original Motif Original Motif Forward 2 11 0.0384687 Taxon: Vertebrates Consensus sequence (original motif): GYCCCGCCYCYBBBB Consensus sequence (reverse complement motif): BBBVKGKGGCGGGKC Alignment: GYCCCGCCYCYBBBB -CCCCTCCCCCY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 63 Motif name: Motif 63 Consensus sequence (original motif): ATTTGCATAWHA Consensus sequence (reverse complement motif): TDWTATGCAAAT ************************************************************************ Best Matches for Motif ID 63 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0627.1 Pou2f3 Original Motif Reverse Complement Forward 5 12 0.0149217 Taxon: Vertebrates Consensus sequence (original motif): BHDTATGCAAATBHDV Consensus sequence (reverse complement motif): BHHVATTTGCATAHHV Alignment: BHHVATTTGCATAHHV ----ATTTGCATAWHA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 64 Motif name: Motif 64 Consensus sequence (original motif): GCATGMTGGGA Consensus sequence (reverse complement motif): TCCCARCATGC ************************************************************************ Best Matches for Motif ID 64 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0088.2 ZNF143 Original Motif Reverse Complement Backward 2 11 0.0572813 Taxon: Vertebrates Consensus sequence (original motif): TWCCCAYAATGCAYYG Consensus sequence (reverse complement motif): CMMTGCATTKTGGGWA Alignment: CMMTGCATTKTGGGWA ----GCATGMTGGGA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 65 Motif name: Motif 65 Consensus sequence (original motif): GTCACGTGAC Consensus sequence (reverse complement motif): GTCACGTGAC ************************************************************************ Best Matches for Motif ID 65 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0636.1 BHLHE41 Original Motif Original Motif Forward 1 10 0.00818767 Taxon: Vertebrates Consensus sequence (original motif): RTCACGTGAC Consensus sequence (reverse complement motif): GTCACGTGAM Alignment: RTCACGTGAC GTCACGTGAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 66 Motif name: Motif 66 Consensus sequence (original motif): CCGGAAGTRA Consensus sequence (reverse complement motif): TMACTTCCGG ************************************************************************ Best Matches for Motif ID 66 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0640.1 ELF3 Original Motif Original Motif Forward 4 10 0.0120558 Taxon: Vertebrates Consensus sequence (original motif): WACCCGGAAGTAD Consensus sequence (reverse complement motif): DTACTTCCGGGTW Alignment: WACCCGGAAGTAD ---CCGGAAGTRA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 67 Motif name: Motif 67 Consensus sequence (original motif): CATCTGCTTGGAGA Consensus sequence (reverse complement motif): TCTCCAAGCAGATG ************************************************************************ Best Matches for Motif ID 67 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0060.2 NFYA Original Motif Original Motif Backward 2 14 0.0479869 Taxon: Vertebrates Consensus sequence (original motif): AGVSYKCTGATTGGTBVR Consensus sequence (reverse complement motif): KVBACCAATCAGYMSBCT Alignment: AGVSYKCTGATTGGTBVR ---CATCTGCTTGGAGA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 68 Motif name: Motif 68 Consensus sequence (original motif): AACAATRGV Consensus sequence (reverse complement motif): VCKATTGTT ************************************************************************ Best Matches for Motif ID 68 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0445.1 D Original Motif Reverse Complement Forward 3 9 0.0214352 Taxon: Insects Consensus sequence (original motif): BCYATTGTTBT Consensus sequence (reverse complement motif): ABAACAATKGV Alignment: ABAACAATKGV --AACAATRGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 69 Motif name: Motif 69 Consensus sequence (original motif): CGCATGCGCASTVS Consensus sequence (reverse complement motif): SVASTGCGCATGCG ************************************************************************ Best Matches for Motif ID 69 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0376.1 RTG3 Reverse Complement Original Motif Backward 6 14 0.0498099 Taxon: Fungi Consensus sequence (original motif): VDVBDAGCACGTGCBBDVWH Consensus sequence (reverse complement motif): DWVDVVGCACGTGCTDVBDB Alignment: VDVBDAGCACGTGCBBDVWH -SVASTGCGCATGCG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 70 Motif name: Motif 70 Consensus sequence (original motif): RVTCTCGCGAGABY Consensus sequence (reverse complement motif): MVTCTCGCGAGABK ************************************************************************ Best Matches for Motif ID 70 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0154.3 EBF1 Reverse Complement Reverse Complement Forward 1 14 0.0477452 Taxon: Vertebrates Consensus sequence (original motif): ABTCCCHWGGGAMT Consensus sequence (reverse complement motif): AYTCCCWHGGGAVT Alignment: AYTCCCWHGGGAVT MVTCTCGCGAGABK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 71 Motif name: Motif 71 Consensus sequence (original motif): AACAACAACA Consensus sequence (reverse complement motif): TGTTGTTGTT ************************************************************************ Best Matches for Motif ID 71 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0870.1 Sox1 Reverse Complement Reverse Complement Backward 1 10 0.0597499 Taxon: Vertebrates Consensus sequence (original motif): AACAATAVCATTGTT Consensus sequence (reverse complement motif): AACAATGBTATTGTT Alignment: AACAATGBTATTGTT -----TGTTGTTGTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 72 Motif name: Motif 72 Consensus sequence (original motif): CCATGGCAACVG Consensus sequence (reverse complement motif): CVGTTGCCATGG ************************************************************************ Best Matches for Motif ID 72 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0138.2 REST Reverse Complement Reverse Complement Backward 8 12 0.0637808 Taxon: Vertebrates Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA Alignment: GGYGCTGTCCATGGTGCTGAA --CVGTTGCCATGG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 73 Motif name: Motif 73 Consensus sequence (original motif): TCCCGCCVW Consensus sequence (reverse complement motif): WBGGCGGGA ************************************************************************ Best Matches for Motif ID 73 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0758.1 E2F7 Reverse Complement Reverse Complement Backward 4 9 0.0204536 Taxon: Vertebrates Consensus sequence (original motif): TTTTCCCGCCAAAA Consensus sequence (reverse complement motif): TTTTGGCGGGAAAA Alignment: TTTTGGCGGGAAAA --WBGGCGGGA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 74 Motif name: Motif 74 Consensus sequence (original motif): AGGTGTGAAAWV Consensus sequence (reverse complement motif): BWTTTCACACCT ************************************************************************ Best Matches for Motif ID 74 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0800.1 EOMES Reverse Complement Reverse Complement Backward 2 12 0.0126084 Taxon: Vertebrates Consensus sequence (original motif): DAGGTGTGAAHDH Consensus sequence (reverse complement motif): HDHTTCACACCTD Alignment: HDHTTCACACCTD BWTTTCACACCT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 75 Motif name: Motif 75 Consensus sequence (original motif): GMTAATTA Consensus sequence (reverse complement motif): TAATTAYC ************************************************************************ Best Matches for Motif ID 75 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0904.1 Hoxb5 Reverse Complement Reverse Complement Forward 7 8 0.0176518 Taxon: Vertebrates Consensus sequence (original motif): AHGBTAATTAVCHHAH Consensus sequence (reverse complement motif): HTDHGVTAATTABCDT Alignment: HTDHGVTAATTABCDT ------TAATTAYC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 76 Motif name: Motif 76 Consensus sequence (original motif): CCAWATWTGG Consensus sequence (reverse complement motif): CCAWATWTGG ************************************************************************ Best Matches for Motif ID 76 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0083.3 SRF Original Motif Original Motif Forward 4 10 0 Taxon: Vertebrates Consensus sequence (original motif): TGMCCATATATGGKCA Consensus sequence (reverse complement motif): TGRCCATATATGGYCA Alignment: TGMCCATATATGGKCA ---CCAWATWTGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 77 Motif name: Motif 77 Consensus sequence (original motif): DVTACWWGTABH Consensus sequence (reverse complement motif): HBTACWWGTAVD ************************************************************************ Best Matches for Motif ID 77 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0941.1 ABF2 Reverse Complement Reverse Complement Forward 1 12 0.0341371 Taxon: Plants Consensus sequence (original motif): BDBDACACGTGDB Consensus sequence (reverse complement motif): DDCACGTGTHHBB Alignment: DDCACGTGTHHBB HBTACWWGTAVD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 78 Motif name: Motif 78 Consensus sequence (original motif): GGCCACGCCC Consensus sequence (reverse complement motif): GGGCGTGGCC ************************************************************************ Best Matches for Motif ID 78 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0742.1 Klf12 Original Motif Original Motif Forward 1 10 0 Taxon: Vertebrates Consensus sequence (original motif): GRCCACGCCCWHHHH Consensus sequence (reverse complement motif): HHHHWGGGCGTGGKC Alignment: GRCCACGCCCWHHHH GGCCACGCCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 79 Motif name: Motif 79 Consensus sequence (original motif): ACCAAGGAGGTTA Consensus sequence (reverse complement motif): TAACCTCCTTGGT ************************************************************************ Best Matches for Motif ID 79 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0308.1 GSM1 Original Motif Reverse Complement Forward 4 13 0.0653916 Taxon: Fungi Consensus sequence (original motif): HBHDDDWADCTCCGGAVBDDH Consensus sequence (reverse complement motif): HDDVVTCCGGAGDTWDDDHVH Alignment: HDDVVTCCGGAGDTWDDDHVH ---ACCAAGGAGGTTA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 80 Motif name: Motif 80 Consensus sequence (original motif): CCCTCCCC Consensus sequence (reverse complement motif): GGGGAGGG ************************************************************************ Best Matches for Motif ID 80 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0079.3 SP1 Original Motif Original Motif Backward 2 8 0.0246016 Taxon: Vertebrates Consensus sequence (original motif): BCCCCKCCCCC Consensus sequence (reverse complement motif): GGGGGYGGGGB Alignment: BCCCCKCCCCC --CCCTCCCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 81 Motif name: Motif 81 Consensus sequence (original motif): TGGCGGGAAADH Consensus sequence (reverse complement motif): HDTTTCCCGCCA ************************************************************************ Best Matches for Motif ID 81 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0541.1 efl-1 Original Motif Original Motif Forward 4 12 0.0282826 Taxon: Nematodes Consensus sequence (original motif): HDHDSGCGSGAAAWT Consensus sequence (reverse complement motif): AWTTTCSCGCSHDHD Alignment: HDHDSGCGSGAAAWT ---TGGCGGGAAADH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 82 Motif name: Motif 82 Consensus sequence (original motif): CTCATGAATAWTYA Consensus sequence (reverse complement motif): TMAWTATTCATGAG ************************************************************************ Best Matches for Motif ID 82 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0791.1 POU4F3 Reverse Complement Original Motif Backward 1 14 0.0563832 Taxon: Vertebrates Consensus sequence (original motif): DTGMATWATTAATGHV Consensus sequence (reverse complement motif): VHCATTAATWATRCAD Alignment: VHCATTAATWATRCAD --TMAWTATTCATGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 83 Motif name: Motif 83 Consensus sequence (original motif): CTGTCAATCAC Consensus sequence (reverse complement motif): GTGATTGACAG ************************************************************************ Best Matches for Motif ID 83 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0070.1 PBX1 Reverse Complement Reverse Complement Forward 2 11 0.0642241 Taxon: Vertebrates Consensus sequence (original motif): HBATCAATCAAW Consensus sequence (reverse complement motif): WTTGATTGATBD Alignment: WTTGATTGATBD -GTGATTGACAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 84 Motif name: Motif 84 Consensus sequence (original motif): CAGGTAAG Consensus sequence (reverse complement motif): CTTACCTG ************************************************************************ Best Matches for Motif ID 84 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0103.2 ZEB1 Original Motif Reverse Complement Forward 1 8 0.00667179 Taxon: Vertebrates Consensus sequence (original motif): VCWCACCTG Consensus sequence (reverse complement motif): CAGGTGWGV Alignment: CAGGTGWGV CAGGTAAG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 85 Motif name: Motif 85 Consensus sequence (original motif): AGCGCCVCCTR Consensus sequence (reverse complement motif): KAGGVGGCGCT ************************************************************************ Best Matches for Motif ID 85 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0531.1 CTCF Reverse Complement Original Motif Backward 1 11 0.0422441 Taxon: Insects Consensus sequence (original motif): BCVMYAGRTGGCGCY Consensus sequence (reverse complement motif): KGCGCCAKCTMRVGB Alignment: KGCGCCAKCTMRVGB ----KAGGVGGCGCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 86 Motif name: Motif 86 Consensus sequence (original motif): CCTGGGAACGAGA Consensus sequence (reverse complement motif): TCTCGTTCCCAGG ************************************************************************ Best Matches for Motif ID 86 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0085.1 Su(H) Original Motif Original Motif Backward 3 13 0.0866213 Taxon: Insects Consensus sequence (original motif): BYGTGGGAAMCBDDVD Consensus sequence (reverse complement motif): DBHBBGYTTCCCACMB Alignment: BYGTGGGAAMCBDDVD -CCTGGGAACGAGA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 87 Motif name: Motif 87 Consensus sequence (original motif): RTGACGTASD Consensus sequence (reverse complement motif): DSTACGTCAK ************************************************************************ Best Matches for Motif ID 87 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0097.1 bZIP911 Reverse Complement Reverse Complement Backward 2 10 0.0406054 Taxon: Plants Consensus sequence (original motif): GRTGACGTGGMC Consensus sequence (reverse complement motif): GRCCACGTCAKC Alignment: GRCCACGTCAKC -DSTACGTCAK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 88 Motif name: Motif 88 Consensus sequence (original motif): CCCACAATGC Consensus sequence (reverse complement motif): GCATTGTGGG ************************************************************************ Best Matches for Motif ID 88 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0088.2 ZNF143 Reverse Complement Reverse Complement Forward 5 10 0.0155351 Taxon: Vertebrates Consensus sequence (original motif): TWCCCAYAATGCAYYG Consensus sequence (reverse complement motif): CMMTGCATTKTGGGWA Alignment: CMMTGCATTKTGGGWA ----GCATTGTGGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 89 Motif name: Motif 89 Consensus sequence (original motif): AAACAAAACAA Consensus sequence (reverse complement motif): TTGTTTTGTTT ************************************************************************ Best Matches for Motif ID 89 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0296.1 FKH1 Reverse Complement Reverse Complement Backward 9 11 0.0515149 Taxon: Fungi Consensus sequence (original motif): BDWWWTGTAAACAAAVDDDV Consensus sequence (reverse complement motif): BHHDVTTTGTTTACAWWWHV Alignment: BHHDVTTTGTTTACAWWWHV -TTGTTTTGTTT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 90 Motif name: Motif 90 Consensus sequence (original motif): AAGACAACA Consensus sequence (reverse complement motif): TGTTGTCTT ************************************************************************ Best Matches for Motif ID 90 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0029.1 Mecom Original Motif Original Motif Backward 1 9 0.0220224 Taxon: Vertebrates Consensus sequence (original motif): AAGAYAAGATAABA Consensus sequence (reverse complement motif): TBTTATCTTMTCTT Alignment: AAGAYAAGATAABA -----AAGACAACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 91 Motif name: Motif 91 Consensus sequence (original motif): ACATCCGGGDMMT Consensus sequence (reverse complement motif): ARRDCCCGGATGT ************************************************************************ Best Matches for Motif ID 91 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0308.1 GSM1 Reverse Complement Reverse Complement Backward 8 13 0.0730858 Taxon: Fungi Consensus sequence (original motif): HBHDDDWADCTCCGGAVBDDH Consensus sequence (reverse complement motif): HDDVVTCCGGAGDTWDDDHVH Alignment: HDDVVTCCGGAGDTWDDDHVH -ARRDCCCGGATGT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 92 Motif name: Motif 92 Consensus sequence (original motif): AAAAYAAACAA Consensus sequence (reverse complement motif): TTGTTTKTTTT ************************************************************************ Best Matches for Motif ID 92 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0481.1 FOXP1 Original Motif Original Motif Forward 3 11 0.0452708 Taxon: Vertebrates Consensus sequence (original motif): HHDADGTAAACAAAV Consensus sequence (reverse complement motif): VTTTGTTTACDTDHD Alignment: HHDADGTAAACAAAV --AAAAYAAACAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 93 Motif name: Motif 93 Consensus sequence (original motif): AATACACATCY Consensus sequence (reverse complement motif): MGATGTGTATT ************************************************************************ Best Matches for Motif ID 93 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0040.1 Foxq1 Original Motif Reverse Complement Forward 1 11 0.0480007 Taxon: Vertebrates Consensus sequence (original motif): HATTGTTTATW Consensus sequence (reverse complement motif): WATAAACAATH Alignment: WATAAACAATH AATACACATCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 94 Motif name: Motif 94 Consensus sequence (original motif): AAGGTAAACA Consensus sequence (reverse complement motif): TGTTTACCTT ************************************************************************ Best Matches for Motif ID 94 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0852.1 Foxk1 Original Motif Original Motif Forward 3 10 0.0286025 Taxon: Vertebrates Consensus sequence (original motif): DDAATGTAAACAAAVVB Consensus sequence (reverse complement motif): BBVTTTGTTTACATTDD Alignment: DDAATGTAAACAAAVVB --AAGGTAAACA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 95 Motif name: Motif 95 Consensus sequence (original motif): CGCCGCCA Consensus sequence (reverse complement motif): TGGCGGCG ************************************************************************ Best Matches for Motif ID 95 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA1034.1 Os05g0497200 Original Motif Original Motif Backward 1 8 0.00831137 Taxon: Plants Consensus sequence (original motif): CGSCGCCR Consensus sequence (reverse complement motif): KGGCGSCG Alignment: CGSCGCCR CGCCGCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 96 Motif name: Motif 96 Consensus sequence (original motif): GAAGAAGAA Consensus sequence (reverse complement motif): TTCTTCTTC ************************************************************************ Best Matches for Motif ID 96 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0377.1 SFL1 Reverse Complement Reverse Complement Forward 4 9 0.034731 Taxon: Fungi Consensus sequence (original motif): HHVHDHATMGAAGAAAHDWDW Consensus sequence (reverse complement motif): WDWDHTTTCTTCYATHHHVHH Alignment: WDWDHTTTCTTCYATHHHVHH ---TTCTTCTTC--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 97 Motif name: Motif 97 Consensus sequence (original motif): GCCTGGTAGAGGCTA Consensus sequence (reverse complement motif): TAGCCTCTACCAGGC ************************************************************************ Best Matches for Motif ID 97 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0139.1 CTCF Original Motif Reverse Complement Backward 1 15 0.0871174 Taxon: Vertebrates Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM Alignment: YDRCCASYAGRKGGCRSYV ----GCCTGGTAGAGGCTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 98 Motif name: Motif 98 Consensus sequence (original motif): AGACAATGTCGAG Consensus sequence (reverse complement motif): CTCGACATTGTCT ************************************************************************ Best Matches for Motif ID 98 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0114.3 Hnf4a Reverse Complement Reverse Complement Forward 2 13 0.0795723 Taxon: Vertebrates Consensus sequence (original motif): RGGGTCAAAGTCCAVH Consensus sequence (reverse complement motif): HBTGGACTTTGACCCM Alignment: HBTGGACTTTGACCCM -CTCGACATTGTCT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 99 Motif name: Motif 99 Consensus sequence (original motif): TCACGTGACC Consensus sequence (reverse complement motif): GGTCACGTGA ************************************************************************ Best Matches for Motif ID 99 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0093.2 USF1 Original Motif Original Motif Backward 1 10 0.0323214 Taxon: Vertebrates Consensus sequence (original motif): VBCAYGTGACC Consensus sequence (reverse complement motif): GGTCACKTGBV Alignment: VBCAYGTGACC -TCACGTGACC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 100 Motif name: Motif 100 Consensus sequence (original motif): GACAGAGGGTCAGAC Consensus sequence (reverse complement motif): GTCTGACCCTCTGTC ************************************************************************ Best Matches for Motif ID 100 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0729.1 RARA Original Motif Original Motif Backward 1 15 0.0856351 Taxon: Vertebrates Consensus sequence (original motif): GAGGTCAAAAGGTCAAKK Consensus sequence (reverse complement motif): YRTTGACCTTTTGACCTC Alignment: GAGGTCAAAAGGTCAAKK ---GACAGAGGGTCAGAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 101 Motif name: Motif 101 Consensus sequence (original motif): GCTCCGCCC Consensus sequence (reverse complement motif): GGGCGGAGC ************************************************************************ Best Matches for Motif ID 101 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0685.1 SP4 Original Motif Original Motif Backward 6 9 0.0231825 Taxon: Vertebrates Consensus sequence (original motif): BWRGCCACGCCCMCTYH Consensus sequence (reverse complement motif): HMAGRGGGCGTGGCKWV Alignment: BWRGCCACGCCCMCTYH ---GCTCCGCCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 102 Motif name: Motif 102 Consensus sequence (original motif): CACACACACACAC Consensus sequence (reverse complement motif): GTGTGTGTGTGTG ************************************************************************ Best Matches for Motif ID 102 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0538.1 daf-12 Reverse Complement Original Motif Forward 1 13 0.0427041 Taxon: Nematodes Consensus sequence (original motif): GWGYGTGTGTGYGTB Consensus sequence (reverse complement motif): BACKCACACACMCWC Alignment: BACKCACACACMCWC GTGTGTGTGTGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 103 Motif name: Motif 103 Consensus sequence (original motif): ACGTCTYACATCG Consensus sequence (reverse complement motif): CGATGTMAGACGT ************************************************************************ Best Matches for Motif ID 103 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0513.1 SMAD2::SMAD3::SMAD4Reverse Complement Reverse Complement Forward 1 13 0.0949021 Taxon: Vertebrates Consensus sequence (original motif): VTGTCTGDCACCT Consensus sequence (reverse complement motif): AGGTGDCAGACAV Alignment: AGGTGDCAGACAV CGATGTMAGACGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 104 Motif name: Motif 104 Consensus sequence (original motif): AATAAGCTAGTT Consensus sequence (reverse complement motif): AACTAGCTTATT ************************************************************************ Best Matches for Motif ID 104 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0788.1 POU3F3 Original Motif Original Motif Backward 2 12 0.0583819 Taxon: Vertebrates Consensus sequence (original motif): WWTATGCWAATTW Consensus sequence (reverse complement motif): WAATTWGCATAWW Alignment: WWTATGCWAATTW AATAAGCTAGTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 105 Motif name: Motif 105 Consensus sequence (original motif): CAGACRAC Consensus sequence (reverse complement motif): GTKGTCTG ************************************************************************ Best Matches for Motif ID 105 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0925.1 sma-4 Original Motif Reverse Complement Backward 1 8 0.0307066 Taxon: Nematodes Consensus sequence (original motif): DVTGTCTGGVB Consensus sequence (reverse complement motif): BBCCAGACAVB Alignment: DVTGTCTGGVB ---CAGACRAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 106 Motif name: Motif 106 Consensus sequence (original motif): ATGATGATGATGAYR Consensus sequence (reverse complement motif): MMTCATCATCATCAT ************************************************************************ Best Matches for Motif ID 106 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0547.1 skn-1 Original Motif Original Motif Forward 1 15 0.0545893 Taxon: Nematodes Consensus sequence (original motif): AAAATGATGACAAWD Consensus sequence (reverse complement motif): DWTTGTCATCATTTT Alignment: AAAATGATGACAAWD ATGATGATGATGAYR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 107 Motif name: Motif 107 Consensus sequence (original motif): ACAGGTGCA Consensus sequence (reverse complement motif): TGCACCTGT ************************************************************************ Best Matches for Motif ID 107 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0824.1 ID4 Reverse Complement Original Motif Backward 2 9 0.0401018 Taxon: Vertebrates Consensus sequence (original motif): DRCACCTGBH Consensus sequence (reverse complement motif): DVCAGGTGKD Alignment: DRCACCTGBH TGCACCTGT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 108 Motif name: Motif 108 Consensus sequence (original motif): GACCAATCA Consensus sequence (reverse complement motif): TGATTGGTC ************************************************************************ Best Matches for Motif ID 108 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0060.2 NFYA Reverse Complement Original Motif Backward 3 9 0.0180131 Taxon: Vertebrates Consensus sequence (original motif): AGVSYKCTGATTGGTBVR Consensus sequence (reverse complement motif): KVBACCAATCAGYMSBCT Alignment: AGVSYKCTGATTGGTBVR -------TGATTGGTC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 109 Motif name: Motif 109 Consensus sequence (original motif): AGCTGTTTTGG Consensus sequence (reverse complement motif): CCAAAACAGCT ************************************************************************ Best Matches for Motif ID 109 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0073.1 RREB1 Reverse Complement Original Motif Forward 3 11 0.0758389 Taxon: Vertebrates Consensus sequence (original motif): CCCCMAAMCAMCCMCMMMCV Consensus sequence (reverse complement motif): BGRRRGRGGRTGRTTYGGGG Alignment: CCCCMAAMCAMCCMCMMMCV --CCAAAACAGCT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 110 Motif name: Motif 110 Consensus sequence (original motif): CAGCCAATCA Consensus sequence (reverse complement motif): TGATTGGCTG ************************************************************************ Best Matches for Motif ID 110 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0314.1 HAP3 Reverse Complement Original Motif Forward 3 10 0.0179107 Taxon: Fungi Consensus sequence (original motif): TCTSATTGGYYVRRA Consensus sequence (reverse complement motif): TMKVMMCCAATSAGA Alignment: TCTSATTGGYYVRRA --TGATTGGCTG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 111 Motif name: Motif 111 Consensus sequence (original motif): ATGCAAAT Consensus sequence (reverse complement motif): ATTTGCAT ************************************************************************ Best Matches for Motif ID 111 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0507.1 POU2F2 Original Motif Reverse Complement Backward 4 8 0.00743635 Taxon: Vertebrates Consensus sequence (original motif): HDHATTTGCATRT Consensus sequence (reverse complement motif): AKATGCAAATDDH Alignment: AKATGCAAATDDH --ATGCAAAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 112 Motif name: Motif 112 Consensus sequence (original motif): ATAGTAGAAWTYGGC Consensus sequence (reverse complement motif): GCCKAWTTCTACTAT ************************************************************************ Best Matches for Motif ID 112 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0377.1 SFL1 Reverse Complement Reverse Complement Backward 7 15 0.0860145 Taxon: Fungi Consensus sequence (original motif): HHVHDHATMGAAGAAAHDWDW Consensus sequence (reverse complement motif): WDWDHTTTCTTCYATHHHVHH Alignment: WDWDHTTTCTTCYATHHHVHH GCCKAWTTCTACTAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 113 Motif name: Motif 113 Consensus sequence (original motif): HRCTGCAGYD Consensus sequence (reverse complement motif): DMCTGCAGKH ************************************************************************ Best Matches for Motif ID 113 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0355.1 PHD1 Original Motif Reverse Complement Forward 1 10 0.00587276 Taxon: Fungi Consensus sequence (original motif): VSMTGCABVV Consensus sequence (reverse complement motif): BVBTGCARSB Alignment: BVBTGCARSB HRCTGCAGYD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 114 Motif name: Motif 114 Consensus sequence (original motif): ACTGTTTACAAGC Consensus sequence (reverse complement motif): GCTTGTAAACAGT ************************************************************************ Best Matches for Motif ID 114 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0296.1 FKH1 Original Motif Reverse Complement Backward 3 13 0.0709953 Taxon: Fungi Consensus sequence (original motif): BDWWWTGTAAACAAAVDDDV Consensus sequence (reverse complement motif): BHHDVTTTGTTTACAWWWHV Alignment: BHHDVTTTGTTTACAWWWHV -----ACTGTTTACAAGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 11-21-2023 16:21:43 Runtime: 3497.06 seconds MOTIFSIM is written by Ngoc Tam L. Tran