**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 4 Number of top significant motifs: 1 Number of best matches: 1 Similarity cutoff: >= 0.5 Matching motif database: Jaspar Core Motif tree: Yes Combined similar motifs: No Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # U20231121_R_11-21-23_5786_InsertFile1.txt 68 1 U20231121_R_11-21-23_5786_InsertFile2.txt 45 2 U20231121_R_11-21-23_5786_InsertFile3.txt 57 3 U20231121_R_11-21-23_5786_InsertFile4.txt 57 4 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ****************************************************************** Top 1 Significant Motifs - Global Matching (Highest to Lowest) ****************************************************************** Dataset #: 1 Motif ID: 2 Motif name: Motif 2 Original motif 0.059438 0.585946 0.091172 0.263444 0.624536 0.064511 0.301494 0.009459 0.345785 0.005464 0.568599 0.080152 0.000040 0.996623 0.000036 0.003301 0.000040 0.999884 0.000036 0.000040 0.989422 0.000036 0.000036 0.010506 0.999888 0.000036 0.000036 0.000040 0.000040 0.026310 0.000036 0.973614 0.033555 0.872012 0.084401 0.010032 0.905954 0.016751 0.077255 0.000040 0.128196 0.173103 0.666947 0.031754 0.661210 0.199354 0.099767 0.039669 Consensus sequence: CARCCAATCAGA Reverse complement motif 0.039669 0.199354 0.099767 0.661210 0.128196 0.666947 0.173103 0.031754 0.000040 0.016751 0.077255 0.905954 0.033555 0.084401 0.872012 0.010032 0.973614 0.026310 0.000036 0.000040 0.000040 0.000036 0.000036 0.999888 0.010506 0.000036 0.000036 0.989422 0.000040 0.000036 0.999884 0.000040 0.000040 0.000036 0.996623 0.003301 0.345785 0.568599 0.005464 0.080152 0.009459 0.064511 0.301494 0.624536 0.059438 0.091172 0.585946 0.263444 Consensus sequence: TCTGATTGGMTG *************************************************************** Best Matches for Top Significant Motif ID 2 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 114 Motif 114 Original Motif Original Motif Forward 2 12 0.000000 Original motif 0.074552 0.269075 0.130930 0.525443 0.009757 0.509887 0.110731 0.369625 0.520650 0.049223 0.424470 0.005657 0.605970 0.007194 0.352777 0.034059 0.000019 0.999944 0.000018 0.000019 0.000019 0.999944 0.000018 0.000019 0.999945 0.000018 0.000018 0.000019 0.999945 0.000018 0.000018 0.000019 0.000019 0.000018 0.000018 0.999945 0.005657 0.878766 0.110945 0.004632 0.948177 0.000018 0.051786 0.000019 0.059900 0.198717 0.697072 0.044311 0.599114 0.209699 0.164515 0.026672 0.257411 0.043285 0.527528 0.171776 0.225894 0.299314 0.316254 0.158538 Consensus sequence: YYRRCCAATCAGAGV Reverse complement motif 0.225894 0.316254 0.299314 0.158538 0.257411 0.527528 0.043285 0.171776 0.026672 0.209699 0.164515 0.599114 0.059900 0.697072 0.198717 0.044311 0.000019 0.000018 0.051786 0.948177 0.005657 0.110945 0.878766 0.004632 0.999945 0.000018 0.000018 0.000019 0.000019 0.000018 0.000018 0.999945 0.000019 0.000018 0.000018 0.999945 0.000019 0.000018 0.999944 0.000019 0.000019 0.000018 0.999944 0.000019 0.034059 0.007194 0.352777 0.605970 0.005657 0.049223 0.424470 0.520650 0.009757 0.110731 0.509887 0.369625 0.525443 0.269075 0.130930 0.074552 Consensus sequence: VCTCTGATTGGKKKM Alignment: YYRRCCAATCAGAGV -CARCCAATCAGA-- ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------