**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 5 Number of top significant motifs: 5 Number of best matches: 5 Similarity cutoff: >= 0.75 Matching motif database: Jaspar Urochordates Motif tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # DREME_DM230.txt 1 1 MEME_DM230.txt 20 2 PScanChIP_DM230.txt 14 3 RSAT_peak-motifs_DM230.txt 10 4 W-ChIPMotifs_DM230.txt 11 5 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ****************************************************************** Top 5 Significant Motifs - Global Matching (Highest to Lowest) ****************************************************************** Dataset #: 3 Motif ID: 24 Motif name: SP1 Original motif 0.000000 0.914286 0.028571 0.057143 0.000000 0.857143 0.028571 0.114286 0.000000 1.000000 0.000000 0.000000 0.114286 0.771429 0.000000 0.114286 0.057143 0.142857 0.428571 0.371429 0.000000 0.800000 0.028571 0.171429 0.028571 0.885714 0.000000 0.085714 0.000000 0.685714 0.085714 0.228571 0.171429 0.714286 0.000000 0.114286 0.085714 0.742857 0.085714 0.085714 Consensus sequence: CCCCKCCCCC Reverse complement motif 0.085714 0.085714 0.742857 0.085714 0.171429 0.000000 0.714286 0.114286 0.000000 0.085714 0.685714 0.228571 0.028571 0.000000 0.885714 0.085714 0.000000 0.028571 0.800000 0.171429 0.057143 0.428571 0.142857 0.371429 0.114286 0.000000 0.771429 0.114286 0.000000 0.000000 1.000000 0.000000 0.000000 0.028571 0.857143 0.114286 0.000000 0.028571 0.914286 0.057143 Consensus sequence: GGGGGYGGGG *************************************************************** Best Matches for Top Significant Motif ID 24 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 7 Motif 7 Original Motif Original Motif Backward 2 10 0.004516 Original motif 0.094340 0.566037 0.113208 0.226415 0.150943 0.547170 0.283019 0.018868 0.018868 0.000000 0.622641 0.358491 0.000000 0.943396 0.056604 0.000000 0.018868 0.811321 0.000000 0.169811 0.018868 0.943396 0.000000 0.037736 0.000000 0.981132 0.018868 0.000000 0.037736 0.000000 0.867924 0.094340 0.018868 0.981132 0.000000 0.000000 0.075472 0.924528 0.000000 0.000000 0.000000 0.830189 0.000000 0.169811 0.132075 0.773585 0.000000 0.094340 0.000000 0.433962 0.377358 0.188679 0.075472 0.358491 0.075472 0.490566 Consensus sequence: CSKCCCCGCCCCSY Reverse complement motif 0.490566 0.358491 0.075472 0.075472 0.000000 0.377358 0.433962 0.188679 0.132075 0.000000 0.773585 0.094340 0.000000 0.000000 0.830189 0.169811 0.075472 0.000000 0.924528 0.000000 0.018868 0.000000 0.981132 0.000000 0.037736 0.867924 0.000000 0.094340 0.000000 0.018868 0.981132 0.000000 0.018868 0.000000 0.943396 0.037736 0.018868 0.000000 0.811321 0.169811 0.000000 0.056604 0.943396 0.000000 0.018868 0.622641 0.000000 0.358491 0.150943 0.283019 0.547170 0.018868 0.094340 0.113208 0.566037 0.226415 Consensus sequence: MSGGGGCGGGGYSG Alignment: CSKCCCCGCCCCSY ---CCCCKCCCCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 36 csGCCCCGCCCCsc Original Motif Original Motif Forward 4 10 0.009658 Original motif 0.179104 0.492537 0.164179 0.164179 0.223881 0.402985 0.283582 0.089552 0.014925 0.014925 0.895522 0.074627 0.000000 0.895522 0.089552 0.014925 0.000000 0.925373 0.014925 0.059701 0.029851 0.970149 0.000000 0.000000 0.000000 0.970149 0.029851 0.000000 0.044776 0.000000 0.940299 0.014925 0.000000 0.955224 0.014925 0.029851 0.029851 0.955224 0.014925 0.000000 0.029851 0.925373 0.014925 0.029851 0.119403 0.820896 0.014925 0.044776 0.104478 0.328358 0.373134 0.194030 0.179104 0.358209 0.223881 0.238806 Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif 0.179104 0.223881 0.358209 0.238806 0.104478 0.373134 0.328358 0.194030 0.119403 0.014925 0.820896 0.044776 0.029851 0.014925 0.925373 0.029851 0.029851 0.014925 0.955224 0.000000 0.000000 0.014925 0.955224 0.029851 0.044776 0.940299 0.000000 0.014925 0.000000 0.029851 0.970149 0.000000 0.029851 0.000000 0.970149 0.000000 0.000000 0.014925 0.925373 0.059701 0.000000 0.089552 0.895522 0.014925 0.014925 0.895522 0.014925 0.074627 0.223881 0.283582 0.402985 0.089552 0.179104 0.164179 0.492537 0.164179 Consensus sequence: BBGGGGCGGGGCVD Alignment: HVGCCCCGCCCCBB ---CCCCKCCCCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 38 cccGCCCCGCCCCsb Original Motif Original Motif Forward 5 10 0.012729 Original motif 0.148936 0.425532 0.234043 0.191489 0.106383 0.553191 0.170213 0.170213 0.106383 0.659574 0.148936 0.085106 0.042553 0.000000 0.851064 0.106383 0.000000 0.936170 0.063830 0.000000 0.000000 0.872340 0.042553 0.085106 0.000000 1.000000 0.000000 0.000000 0.000000 0.957447 0.042553 0.000000 0.021277 0.021277 0.957447 0.000000 0.000000 0.957447 0.021277 0.021277 0.042553 0.936170 0.021277 0.000000 0.021277 0.957447 0.021277 0.000000 0.063830 0.914894 0.021277 0.000000 0.063830 0.297872 0.404255 0.234043 0.148936 0.319149 0.255319 0.276596 Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif 0.148936 0.255319 0.319149 0.276596 0.063830 0.404255 0.297872 0.234043 0.063830 0.021277 0.914894 0.000000 0.021277 0.021277 0.957447 0.000000 0.042553 0.021277 0.936170 0.000000 0.000000 0.021277 0.957447 0.021277 0.021277 0.957447 0.021277 0.000000 0.000000 0.042553 0.957447 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.042553 0.872340 0.085106 0.000000 0.063830 0.936170 0.000000 0.042553 0.851064 0.000000 0.106383 0.106383 0.148936 0.659574 0.085106 0.106383 0.170213 0.553191 0.170213 0.148936 0.234043 0.425532 0.191489 Consensus sequence: BBGGGGCGGGGCGGB Alignment: BCCGCCCCGCCCCBB ----CCCCKCCCCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 50 TFF11 Reverse Complement Original Motif Forward 4 10 0.017440 Original motif 0.076190 0.085714 0.819048 0.019048 0.076190 0.066667 0.780952 0.076190 0.438095 0.323810 0.180952 0.057143 0.123810 0.180952 0.657143 0.038095 0.095238 0.076190 0.790476 0.038095 0.371429 0.104762 0.485714 0.038095 0.019048 0.038095 0.914286 0.028571 0.019048 0.095238 0.885714 0.000000 0.057143 0.866667 0.066667 0.009524 0.009524 0.009524 0.980952 0.000000 0.047619 0.104762 0.838095 0.009524 0.333333 0.161905 0.409524 0.095238 0.019048 0.009524 0.952381 0.019048 0.114286 0.580952 0.266667 0.038095 Consensus sequence: GGMGGRGGCGGVGC Reverse complement motif 0.114286 0.266667 0.580952 0.038095 0.019048 0.952381 0.009524 0.019048 0.333333 0.409524 0.161905 0.095238 0.047619 0.838095 0.104762 0.009524 0.009524 0.980952 0.009524 0.000000 0.057143 0.066667 0.866667 0.009524 0.019048 0.885714 0.095238 0.000000 0.019048 0.914286 0.038095 0.028571 0.371429 0.485714 0.104762 0.038095 0.095238 0.790476 0.076190 0.038095 0.123810 0.657143 0.180952 0.038095 0.057143 0.323810 0.180952 0.438095 0.076190 0.780952 0.066667 0.076190 0.076190 0.819048 0.085714 0.019048 Consensus sequence: GCVCCGCCMCCYCC Alignment: GGMGGRGGCGGVGC ---GGGGGYGGGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 54 TFM12 Original Motif Original Motif Forward 7 10 0.030155 Original motif 0.000000 1.000000 0.000000 0.000000 0.190000 0.400000 0.000000 0.410000 0.000000 0.520000 0.190000 0.290000 0.110000 0.610000 0.100000 0.180000 0.180000 0.290000 0.330000 0.200000 0.000000 0.380000 0.350000 0.270000 0.000000 0.820000 0.000000 0.180000 0.180000 0.390000 0.000000 0.430000 0.000000 0.530000 0.000000 0.470000 0.000000 0.470000 0.150000 0.380000 0.000000 0.240000 0.240000 0.520000 0.000000 0.870000 0.000000 0.130000 0.050000 0.680000 0.000000 0.270000 0.180000 0.380000 0.100000 0.340000 0.000000 0.620000 0.220000 0.160000 0.000000 0.660000 0.090000 0.250000 0.200000 0.150000 0.130000 0.520000 0.040000 0.460000 0.160000 0.340000 0.060000 0.530000 0.030000 0.380000 0.050000 0.570000 0.040000 0.340000 Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif 0.050000 0.040000 0.570000 0.340000 0.060000 0.030000 0.530000 0.380000 0.040000 0.160000 0.460000 0.340000 0.520000 0.150000 0.130000 0.200000 0.000000 0.090000 0.660000 0.250000 0.000000 0.220000 0.620000 0.160000 0.180000 0.100000 0.380000 0.340000 0.050000 0.000000 0.680000 0.270000 0.000000 0.000000 0.870000 0.130000 0.520000 0.240000 0.240000 0.000000 0.000000 0.150000 0.470000 0.380000 0.000000 0.000000 0.530000 0.470000 0.430000 0.390000 0.000000 0.180000 0.000000 0.000000 0.820000 0.180000 0.000000 0.350000 0.380000 0.270000 0.180000 0.330000 0.290000 0.200000 0.110000 0.100000 0.610000 0.180000 0.000000 0.190000 0.520000 0.290000 0.410000 0.400000 0.000000 0.190000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: KKKAGGDGGAKKMGBBGKMG Alignment: CYYCBBCYYYTCCHCCTYYY ------CCCCKCCCCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 45 Motif name: wbgTAAATAww Original motif 0.285714 0.142857 0.178571 0.392857 0.214286 0.285714 0.250000 0.250000 0.142857 0.071429 0.678571 0.107143 0.000000 0.000000 0.000000 1.000000 0.928571 0.000000 0.035714 0.035714 0.821429 0.107143 0.035714 0.035714 0.821429 0.000000 0.178571 0.000000 0.000000 0.071429 0.000000 0.928571 0.928571 0.035714 0.035714 0.000000 0.285714 0.214286 0.142857 0.357143 0.392857 0.178571 0.178571 0.250000 Consensus sequence: DBGTAAATAHD Reverse complement motif 0.250000 0.178571 0.178571 0.392857 0.357143 0.214286 0.142857 0.285714 0.000000 0.035714 0.035714 0.928571 0.928571 0.071429 0.000000 0.000000 0.000000 0.000000 0.178571 0.821429 0.035714 0.107143 0.035714 0.821429 0.035714 0.000000 0.035714 0.928571 1.000000 0.000000 0.000000 0.000000 0.142857 0.678571 0.071429 0.107143 0.214286 0.250000 0.285714 0.250000 0.392857 0.142857 0.178571 0.285714 Consensus sequence: DHTATTTACBD *************************************************************** Best Matches for Top Significant Motif ID 45 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 56 TFM11 Reverse Complement Reverse Complement Forward 15 11 0.019277 Original motif 0.294118 0.235294 0.117647 0.352941 0.382353 0.205882 0.205882 0.205882 0.529412 0.000000 0.117647 0.352941 0.235294 0.294118 0.323529 0.147059 1.000000 0.000000 0.000000 0.000000 0.941176 0.000000 0.000000 0.058824 0.764706 0.000000 0.029412 0.205882 0.382353 0.235294 0.176471 0.205882 0.735294 0.000000 0.058824 0.205882 0.735294 0.029412 0.117647 0.117647 0.676471 0.000000 0.088235 0.235294 0.529412 0.117647 0.205882 0.147059 0.705882 0.176471 0.117647 0.000000 0.441176 0.352941 0.147059 0.058824 0.941176 0.058824 0.000000 0.000000 0.852941 0.000000 0.147059 0.000000 0.676471 0.088235 0.000000 0.235294 0.529412 0.323529 0.117647 0.029412 0.470588 0.176471 0.000000 0.352941 0.411765 0.000000 0.147059 0.441176 0.500000 0.088235 0.147059 0.264706 0.294118 0.205882 0.088235 0.411765 0.205882 0.235294 0.264706 0.294118 0.470588 0.000000 0.117647 0.411765 0.617647 0.176471 0.205882 0.000000 Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif 0.000000 0.176471 0.205882 0.617647 0.411765 0.000000 0.117647 0.470588 0.294118 0.235294 0.264706 0.205882 0.411765 0.205882 0.088235 0.294118 0.264706 0.088235 0.147059 0.500000 0.441176 0.000000 0.147059 0.411765 0.352941 0.176471 0.000000 0.470588 0.029412 0.323529 0.117647 0.529412 0.235294 0.088235 0.000000 0.676471 0.000000 0.000000 0.147059 0.852941 0.000000 0.058824 0.000000 0.941176 0.058824 0.352941 0.147059 0.441176 0.000000 0.176471 0.117647 0.705882 0.147059 0.117647 0.205882 0.529412 0.235294 0.000000 0.088235 0.676471 0.117647 0.029412 0.117647 0.735294 0.205882 0.000000 0.058824 0.735294 0.205882 0.235294 0.176471 0.382353 0.205882 0.000000 0.029412 0.764706 0.058824 0.000000 0.000000 0.941176 0.000000 0.000000 0.000000 1.000000 0.235294 0.323529 0.294118 0.147059 0.352941 0.000000 0.117647 0.529412 0.205882 0.205882 0.205882 0.382353 0.352941 0.235294 0.117647 0.294118 Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: TWVHWWWYTTTYTTTTTHTTTVWBH --------------DHTATTTACBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 9 Motif 9 Reverse Complement Original Motif Backward 4 11 0.025054 Original motif 0.916667 0.000000 0.000000 0.083333 0.666667 0.000000 0.083333 0.250000 0.000000 0.000000 0.333333 0.666667 0.333333 0.166667 0.083333 0.416667 0.666667 0.083333 0.083333 0.166667 0.250000 0.000000 0.000000 0.750000 0.916667 0.000000 0.083333 0.000000 0.250000 0.000000 0.000000 0.750000 0.333333 0.083333 0.000000 0.583334 0.000000 0.000000 0.000000 1.000000 0.250000 0.333333 0.166667 0.250000 1.000000 0.000000 0.000000 0.000000 0.666667 0.250000 0.083333 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: AATHATATWTHAAA Reverse complement motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.083333 0.666667 0.000000 0.000000 0.000000 1.000000 0.250000 0.166667 0.333333 0.250000 1.000000 0.000000 0.000000 0.000000 0.583334 0.083333 0.000000 0.333333 0.750000 0.000000 0.000000 0.250000 0.000000 0.000000 0.083333 0.916667 0.750000 0.000000 0.000000 0.250000 0.166667 0.083333 0.083333 0.666667 0.416667 0.166667 0.083333 0.333333 0.666667 0.000000 0.333333 0.000000 0.250000 0.000000 0.083333 0.666667 0.083333 0.000000 0.000000 0.916667 Consensus sequence: TTTDAWATATHATT Alignment: AATHATATWTHAAA DHTATTTACBD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 6 Motif 6 Original Motif Original Motif Backward 1 11 0.027895 Original motif 0.750000 0.000000 0.000000 0.250000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.500000 0.000000 0.250000 0.250000 0.000000 0.000000 0.875000 0.125000 0.875000 0.125000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.125000 0.375000 0.000000 0.250000 0.125000 0.000000 0.625000 1.000000 0.000000 0.000000 0.000000 0.625000 0.000000 0.000000 0.375000 0.500000 0.000000 0.000000 0.500000 Consensus sequence: AATTYDGAARTAWW Reverse complement motif 0.500000 0.000000 0.000000 0.500000 0.375000 0.000000 0.000000 0.625000 0.000000 0.000000 0.000000 1.000000 0.625000 0.125000 0.000000 0.250000 0.000000 0.125000 0.375000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.125000 0.000000 0.875000 0.000000 0.875000 0.000000 0.125000 0.250000 0.000000 0.250000 0.500000 0.000000 0.000000 0.500000 0.500000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.250000 0.000000 0.000000 0.750000 Consensus sequence: WWTAKTTCDKAATT Alignment: AATTYDGAARTAWW ---DBGTAAATAHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 52 TFM1 Original Motif Reverse Complement Forward 1 11 0.028322 Original motif 0.384615 0.076923 0.000000 0.538462 0.256410 0.000000 0.000000 0.743590 0.076923 0.153846 0.333333 0.435897 0.230769 0.000000 0.000000 0.769231 0.000000 0.256410 0.000000 0.743590 0.000000 0.000000 0.076923 0.923077 0.025641 0.076923 0.256410 0.641026 0.000000 0.128205 0.230769 0.641026 0.333333 0.230769 0.205128 0.230769 0.282051 0.179487 0.000000 0.538462 0.051282 0.128205 0.000000 0.820513 0.128205 0.000000 0.000000 0.871795 0.256410 0.025641 0.179487 0.538462 0.102564 0.000000 0.000000 0.897436 0.128205 0.000000 0.102564 0.769231 0.128205 0.025641 0.205128 0.641026 0.102564 0.333333 0.256410 0.307692 0.256410 0.102564 0.000000 0.641026 Consensus sequence: WTKTTTTTHWTTTTTTBT Reverse complement motif 0.641026 0.102564 0.000000 0.256410 0.102564 0.256410 0.333333 0.307692 0.641026 0.025641 0.205128 0.128205 0.769231 0.000000 0.102564 0.128205 0.897436 0.000000 0.000000 0.102564 0.538462 0.025641 0.179487 0.256410 0.871795 0.000000 0.000000 0.128205 0.820513 0.128205 0.000000 0.051282 0.538462 0.179487 0.000000 0.282051 0.230769 0.230769 0.205128 0.333333 0.641026 0.128205 0.230769 0.000000 0.641026 0.076923 0.256410 0.025641 0.923077 0.000000 0.076923 0.000000 0.743590 0.256410 0.000000 0.000000 0.769231 0.000000 0.000000 0.230769 0.435897 0.153846 0.333333 0.076923 0.743590 0.000000 0.000000 0.256410 0.538462 0.076923 0.000000 0.384615 Consensus sequence: ABAAAAAAWHAAAAARAW Alignment: ABAAAAAAWHAAAAARAW DBGTAAATAHD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 53 TFM3 Original Motif Reverse Complement Backward 2 11 0.030810 Original motif 0.454545 0.000000 0.000000 0.545455 0.500000 0.000000 0.000000 0.500000 0.318182 0.181818 0.090909 0.409091 0.000000 0.000000 0.136364 0.863636 0.318182 0.000000 0.000000 0.681818 0.045455 0.000000 0.272727 0.681818 0.272727 0.045455 0.090909 0.590909 0.272727 0.090909 0.000000 0.636364 0.045455 0.818182 0.000000 0.136364 0.727273 0.000000 0.000000 0.272727 0.090909 0.318182 0.227273 0.363636 0.863636 0.045455 0.000000 0.090909 0.818182 0.090909 0.090909 0.000000 0.500000 0.090909 0.090909 0.318182 0.136364 0.227273 0.000000 0.636364 0.227273 0.000000 0.000000 0.772727 0.363636 0.090909 0.000000 0.545455 0.772727 0.181818 0.045455 0.000000 Consensus sequence: WWHTTTTTCABAAWTTWA Reverse complement motif 0.000000 0.181818 0.045455 0.772727 0.545455 0.090909 0.000000 0.363636 0.772727 0.000000 0.000000 0.227273 0.636364 0.227273 0.000000 0.136364 0.318182 0.090909 0.090909 0.500000 0.000000 0.090909 0.090909 0.818182 0.090909 0.045455 0.000000 0.863636 0.363636 0.318182 0.227273 0.090909 0.272727 0.000000 0.000000 0.727273 0.045455 0.000000 0.818182 0.136364 0.636364 0.090909 0.000000 0.272727 0.590909 0.045455 0.090909 0.272727 0.681818 0.000000 0.272727 0.045455 0.681818 0.000000 0.000000 0.318182 0.863636 0.000000 0.136364 0.000000 0.409091 0.181818 0.090909 0.318182 0.500000 0.000000 0.000000 0.500000 0.545455 0.000000 0.000000 0.454545 Consensus sequence: TWAAWTTVTGAAAAAHWW Alignment: TWAAWTTVTGAAAAAHWW ------DBGTAAATAHD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 27 Motif name: Klf4 Original motif 0.338561 0.018681 0.235701 0.407057 0.020276 0.002074 0.976267 0.001382 0.003223 0.002993 0.990792 0.002993 0.003221 0.008282 0.984817 0.003681 0.063693 0.441941 0.002529 0.491837 0.005064 0.003453 0.983656 0.007827 0.009671 0.018420 0.501727 0.470182 0.060872 0.010606 0.899700 0.028822 0.028400 0.030016 0.874856 0.066728 0.058742 0.660962 0.064755 0.215541 Consensus sequence: DGGGYGKGGC Reverse complement motif 0.058742 0.064755 0.660962 0.215541 0.028400 0.874856 0.030016 0.066728 0.060872 0.899700 0.010606 0.028822 0.009671 0.501727 0.018420 0.470182 0.005064 0.983656 0.003453 0.007827 0.491837 0.441941 0.002529 0.063693 0.003221 0.984817 0.008282 0.003681 0.003223 0.990792 0.002993 0.002993 0.020276 0.976267 0.002074 0.001382 0.407057 0.018681 0.235701 0.338561 Consensus sequence: GCCYCMCCCD *************************************************************** Best Matches for Top Significant Motif ID 27 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 7 Motif 7 Reverse Complement Original Motif Forward 3 10 0.015246 Original motif 0.094340 0.566037 0.113208 0.226415 0.150943 0.547170 0.283019 0.018868 0.018868 0.000000 0.622641 0.358491 0.000000 0.943396 0.056604 0.000000 0.018868 0.811321 0.000000 0.169811 0.018868 0.943396 0.000000 0.037736 0.000000 0.981132 0.018868 0.000000 0.037736 0.000000 0.867924 0.094340 0.018868 0.981132 0.000000 0.000000 0.075472 0.924528 0.000000 0.000000 0.000000 0.830189 0.000000 0.169811 0.132075 0.773585 0.000000 0.094340 0.000000 0.433962 0.377358 0.188679 0.075472 0.358491 0.075472 0.490566 Consensus sequence: CSKCCCCGCCCCSY Reverse complement motif 0.490566 0.358491 0.075472 0.075472 0.000000 0.377358 0.433962 0.188679 0.132075 0.000000 0.773585 0.094340 0.000000 0.000000 0.830189 0.169811 0.075472 0.000000 0.924528 0.000000 0.018868 0.000000 0.981132 0.000000 0.037736 0.867924 0.000000 0.094340 0.000000 0.018868 0.981132 0.000000 0.018868 0.000000 0.943396 0.037736 0.018868 0.000000 0.811321 0.169811 0.000000 0.056604 0.943396 0.000000 0.018868 0.622641 0.000000 0.358491 0.150943 0.283019 0.547170 0.018868 0.094340 0.113208 0.566037 0.226415 Consensus sequence: MSGGGGCGGGGYSG Alignment: CSKCCCCGCCCCSY --GCCYCMCCCD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 36 csGCCCCGCCCCsc Original Motif Reverse Complement Backward 3 10 0.016019 Original motif 0.179104 0.492537 0.164179 0.164179 0.223881 0.402985 0.283582 0.089552 0.014925 0.014925 0.895522 0.074627 0.000000 0.895522 0.089552 0.014925 0.000000 0.925373 0.014925 0.059701 0.029851 0.970149 0.000000 0.000000 0.000000 0.970149 0.029851 0.000000 0.044776 0.000000 0.940299 0.014925 0.000000 0.955224 0.014925 0.029851 0.029851 0.955224 0.014925 0.000000 0.029851 0.925373 0.014925 0.029851 0.119403 0.820896 0.014925 0.044776 0.104478 0.328358 0.373134 0.194030 0.179104 0.358209 0.223881 0.238806 Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif 0.179104 0.223881 0.358209 0.238806 0.104478 0.373134 0.328358 0.194030 0.119403 0.014925 0.820896 0.044776 0.029851 0.014925 0.925373 0.029851 0.029851 0.014925 0.955224 0.000000 0.000000 0.014925 0.955224 0.029851 0.044776 0.940299 0.000000 0.014925 0.000000 0.029851 0.970149 0.000000 0.029851 0.000000 0.970149 0.000000 0.000000 0.014925 0.925373 0.059701 0.000000 0.089552 0.895522 0.014925 0.014925 0.895522 0.014925 0.074627 0.223881 0.283582 0.402985 0.089552 0.179104 0.164179 0.492537 0.164179 Consensus sequence: BBGGGGCGGGGCVD Alignment: BBGGGGCGGGGCVD --DGGGYGKGGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 38 cccGCCCCGCCCCsb Original Motif Reverse Complement Forward 3 10 0.019489 Original motif 0.148936 0.425532 0.234043 0.191489 0.106383 0.553191 0.170213 0.170213 0.106383 0.659574 0.148936 0.085106 0.042553 0.000000 0.851064 0.106383 0.000000 0.936170 0.063830 0.000000 0.000000 0.872340 0.042553 0.085106 0.000000 1.000000 0.000000 0.000000 0.000000 0.957447 0.042553 0.000000 0.021277 0.021277 0.957447 0.000000 0.000000 0.957447 0.021277 0.021277 0.042553 0.936170 0.021277 0.000000 0.021277 0.957447 0.021277 0.000000 0.063830 0.914894 0.021277 0.000000 0.063830 0.297872 0.404255 0.234043 0.148936 0.319149 0.255319 0.276596 Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif 0.148936 0.255319 0.319149 0.276596 0.063830 0.404255 0.297872 0.234043 0.063830 0.021277 0.914894 0.000000 0.021277 0.021277 0.957447 0.000000 0.042553 0.021277 0.936170 0.000000 0.000000 0.021277 0.957447 0.021277 0.021277 0.957447 0.021277 0.000000 0.000000 0.042553 0.957447 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.042553 0.872340 0.085106 0.000000 0.063830 0.936170 0.000000 0.042553 0.851064 0.000000 0.106383 0.106383 0.148936 0.659574 0.085106 0.106383 0.170213 0.553191 0.170213 0.148936 0.234043 0.425532 0.191489 Consensus sequence: BBGGGGCGGGGCGGB Alignment: BBGGGGCGGGGCGGB --DGGGYGKGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 50 TFF11 Original Motif Original Motif Forward 5 10 0.040291 Original motif 0.076190 0.085714 0.819048 0.019048 0.076190 0.066667 0.780952 0.076190 0.438095 0.323810 0.180952 0.057143 0.123810 0.180952 0.657143 0.038095 0.095238 0.076190 0.790476 0.038095 0.371429 0.104762 0.485714 0.038095 0.019048 0.038095 0.914286 0.028571 0.019048 0.095238 0.885714 0.000000 0.057143 0.866667 0.066667 0.009524 0.009524 0.009524 0.980952 0.000000 0.047619 0.104762 0.838095 0.009524 0.333333 0.161905 0.409524 0.095238 0.019048 0.009524 0.952381 0.019048 0.114286 0.580952 0.266667 0.038095 Consensus sequence: GGMGGRGGCGGVGC Reverse complement motif 0.114286 0.266667 0.580952 0.038095 0.019048 0.952381 0.009524 0.019048 0.333333 0.409524 0.161905 0.095238 0.047619 0.838095 0.104762 0.009524 0.009524 0.980952 0.009524 0.000000 0.057143 0.066667 0.866667 0.009524 0.019048 0.885714 0.095238 0.000000 0.019048 0.914286 0.038095 0.028571 0.371429 0.485714 0.104762 0.038095 0.095238 0.790476 0.076190 0.038095 0.123810 0.657143 0.180952 0.038095 0.057143 0.323810 0.180952 0.438095 0.076190 0.780952 0.066667 0.076190 0.076190 0.819048 0.085714 0.019048 Consensus sequence: GCVCCGCCMCCYCC Alignment: GGMGGRGGCGGVGC ----DGGGYGKGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 54 TFM12 Reverse Complement Original Motif Backward 7 10 0.055643 Original motif 0.000000 1.000000 0.000000 0.000000 0.190000 0.400000 0.000000 0.410000 0.000000 0.520000 0.190000 0.290000 0.110000 0.610000 0.100000 0.180000 0.180000 0.290000 0.330000 0.200000 0.000000 0.380000 0.350000 0.270000 0.000000 0.820000 0.000000 0.180000 0.180000 0.390000 0.000000 0.430000 0.000000 0.530000 0.000000 0.470000 0.000000 0.470000 0.150000 0.380000 0.000000 0.240000 0.240000 0.520000 0.000000 0.870000 0.000000 0.130000 0.050000 0.680000 0.000000 0.270000 0.180000 0.380000 0.100000 0.340000 0.000000 0.620000 0.220000 0.160000 0.000000 0.660000 0.090000 0.250000 0.200000 0.150000 0.130000 0.520000 0.040000 0.460000 0.160000 0.340000 0.060000 0.530000 0.030000 0.380000 0.050000 0.570000 0.040000 0.340000 Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif 0.050000 0.040000 0.570000 0.340000 0.060000 0.030000 0.530000 0.380000 0.040000 0.160000 0.460000 0.340000 0.520000 0.150000 0.130000 0.200000 0.000000 0.090000 0.660000 0.250000 0.000000 0.220000 0.620000 0.160000 0.180000 0.100000 0.380000 0.340000 0.050000 0.000000 0.680000 0.270000 0.000000 0.000000 0.870000 0.130000 0.520000 0.240000 0.240000 0.000000 0.000000 0.150000 0.470000 0.380000 0.000000 0.000000 0.530000 0.470000 0.430000 0.390000 0.000000 0.180000 0.000000 0.000000 0.820000 0.180000 0.000000 0.350000 0.380000 0.270000 0.180000 0.330000 0.290000 0.200000 0.110000 0.100000 0.610000 0.180000 0.000000 0.190000 0.520000 0.290000 0.410000 0.400000 0.000000 0.190000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: KKKAGGDGGAKKMGBBGKMG Alignment: CYYCBBCYYYTCCHCCTYYY ----GCCYCMCCCD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 44 Motif name: dhACATTCTkh Original motif 0.333333 0.000000 0.333333 0.333333 0.333333 0.333333 0.000000 0.333333 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.333333 0.333333 0.333333 0.000000 0.333333 Consensus sequence: DHACATTCTGH Reverse complement motif 0.333333 0.333333 0.000000 0.333333 0.000000 0.666667 0.000000 0.333333 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.333333 0.333333 0.000000 0.333333 0.333333 0.000000 0.333333 0.333333 Consensus sequence: HCAGAATGTHD *************************************************************** Best Matches for Top Significant Motif ID 44 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 53 TFM3 Original Motif Reverse Complement Backward 8 11 0.021752 Original motif 0.454545 0.000000 0.000000 0.545455 0.500000 0.000000 0.000000 0.500000 0.318182 0.181818 0.090909 0.409091 0.000000 0.000000 0.136364 0.863636 0.318182 0.000000 0.000000 0.681818 0.045455 0.000000 0.272727 0.681818 0.272727 0.045455 0.090909 0.590909 0.272727 0.090909 0.000000 0.636364 0.045455 0.818182 0.000000 0.136364 0.727273 0.000000 0.000000 0.272727 0.090909 0.318182 0.227273 0.363636 0.863636 0.045455 0.000000 0.090909 0.818182 0.090909 0.090909 0.000000 0.500000 0.090909 0.090909 0.318182 0.136364 0.227273 0.000000 0.636364 0.227273 0.000000 0.000000 0.772727 0.363636 0.090909 0.000000 0.545455 0.772727 0.181818 0.045455 0.000000 Consensus sequence: WWHTTTTTCABAAWTTWA Reverse complement motif 0.000000 0.181818 0.045455 0.772727 0.545455 0.090909 0.000000 0.363636 0.772727 0.000000 0.000000 0.227273 0.636364 0.227273 0.000000 0.136364 0.318182 0.090909 0.090909 0.500000 0.000000 0.090909 0.090909 0.818182 0.090909 0.045455 0.000000 0.863636 0.363636 0.318182 0.227273 0.090909 0.272727 0.000000 0.000000 0.727273 0.045455 0.000000 0.818182 0.136364 0.636364 0.090909 0.000000 0.272727 0.590909 0.045455 0.090909 0.272727 0.681818 0.000000 0.272727 0.045455 0.681818 0.000000 0.000000 0.318182 0.863636 0.000000 0.136364 0.000000 0.409091 0.181818 0.090909 0.318182 0.500000 0.000000 0.000000 0.500000 0.545455 0.000000 0.000000 0.454545 Consensus sequence: TWAAWTTVTGAAAAAHWW Alignment: TWAAWTTVTGAAAAAHWW DHACATTCTGH------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 16 Motif 16 Reverse Complement Reverse Complement Backward 4 11 0.025884 Original motif 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: ACAAWTRATTTTGA Reverse complement motif 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: TCAAAATKAWTTGT Alignment: TCAAAATKAWTTGT HCAGAATGTHD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 56 TFM11 Original Motif Reverse Complement Backward 11 11 0.030786 Original motif 0.294118 0.235294 0.117647 0.352941 0.382353 0.205882 0.205882 0.205882 0.529412 0.000000 0.117647 0.352941 0.235294 0.294118 0.323529 0.147059 1.000000 0.000000 0.000000 0.000000 0.941176 0.000000 0.000000 0.058824 0.764706 0.000000 0.029412 0.205882 0.382353 0.235294 0.176471 0.205882 0.735294 0.000000 0.058824 0.205882 0.735294 0.029412 0.117647 0.117647 0.676471 0.000000 0.088235 0.235294 0.529412 0.117647 0.205882 0.147059 0.705882 0.176471 0.117647 0.000000 0.441176 0.352941 0.147059 0.058824 0.941176 0.058824 0.000000 0.000000 0.852941 0.000000 0.147059 0.000000 0.676471 0.088235 0.000000 0.235294 0.529412 0.323529 0.117647 0.029412 0.470588 0.176471 0.000000 0.352941 0.411765 0.000000 0.147059 0.441176 0.500000 0.088235 0.147059 0.264706 0.294118 0.205882 0.088235 0.411765 0.205882 0.235294 0.264706 0.294118 0.470588 0.000000 0.117647 0.411765 0.617647 0.176471 0.205882 0.000000 Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif 0.000000 0.176471 0.205882 0.617647 0.411765 0.000000 0.117647 0.470588 0.294118 0.235294 0.264706 0.205882 0.411765 0.205882 0.088235 0.294118 0.264706 0.088235 0.147059 0.500000 0.441176 0.000000 0.147059 0.411765 0.352941 0.176471 0.000000 0.470588 0.029412 0.323529 0.117647 0.529412 0.235294 0.088235 0.000000 0.676471 0.000000 0.000000 0.147059 0.852941 0.000000 0.058824 0.000000 0.941176 0.058824 0.352941 0.147059 0.441176 0.000000 0.176471 0.117647 0.705882 0.147059 0.117647 0.205882 0.529412 0.235294 0.000000 0.088235 0.676471 0.117647 0.029412 0.117647 0.735294 0.205882 0.000000 0.058824 0.735294 0.205882 0.235294 0.176471 0.382353 0.205882 0.000000 0.029412 0.764706 0.058824 0.000000 0.000000 0.941176 0.000000 0.000000 0.000000 1.000000 0.235294 0.323529 0.294118 0.147059 0.352941 0.000000 0.117647 0.529412 0.205882 0.205882 0.205882 0.382353 0.352941 0.235294 0.117647 0.294118 Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH Alignment: TWVHWWWYTTTYTTTTTHTTTVWBH ----DHACATTCTGH---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 55 TFM13 Original Motif Original Motif Backward 9 11 0.035732 Original motif 0.666667 0.133333 0.000000 0.200000 0.066667 0.200000 0.000000 0.733333 0.200000 0.000000 0.333333 0.466667 0.666667 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.333333 0.600000 0.000000 0.000000 0.400000 0.333333 0.000000 0.000000 0.666667 0.000000 0.066667 0.000000 0.933333 0.133333 0.266667 0.000000 0.600000 0.266667 0.000000 0.000000 0.733333 0.466667 0.000000 0.466667 0.066667 0.600000 0.333333 0.000000 0.066667 0.800000 0.200000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.133333 0.200000 0.200000 0.466667 0.800000 0.000000 0.200000 0.000000 0.466667 0.266667 0.066667 0.200000 0.400000 0.333333 0.000000 0.266667 0.200000 0.000000 0.000000 0.800000 0.600000 0.000000 0.000000 0.400000 Consensus sequence: ATKAAWTTTTRMAABAHHTW Reverse complement motif 0.400000 0.000000 0.000000 0.600000 0.800000 0.000000 0.000000 0.200000 0.266667 0.333333 0.000000 0.400000 0.200000 0.266667 0.066667 0.466667 0.000000 0.000000 0.200000 0.800000 0.466667 0.200000 0.200000 0.133333 0.000000 0.333333 0.000000 0.666667 0.000000 0.200000 0.000000 0.800000 0.066667 0.333333 0.000000 0.600000 0.066667 0.000000 0.466667 0.466667 0.733333 0.000000 0.000000 0.266667 0.600000 0.266667 0.000000 0.133333 0.933333 0.066667 0.000000 0.000000 0.666667 0.000000 0.000000 0.333333 0.400000 0.000000 0.000000 0.600000 0.333333 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.666667 0.466667 0.000000 0.333333 0.200000 0.733333 0.200000 0.000000 0.066667 0.200000 0.133333 0.000000 0.666667 Consensus sequence: WAHHTVTTYKAAAAWTTRAT Alignment: ATKAAWTTTTRMAABAHHTW -DHACATTCTGH-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 6 Motif 6 Reverse Complement Original Motif Backward 4 11 0.040088 Original motif 0.750000 0.000000 0.000000 0.250000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.500000 0.000000 0.250000 0.250000 0.000000 0.000000 0.875000 0.125000 0.875000 0.125000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.125000 0.375000 0.000000 0.250000 0.125000 0.000000 0.625000 1.000000 0.000000 0.000000 0.000000 0.625000 0.000000 0.000000 0.375000 0.500000 0.000000 0.000000 0.500000 Consensus sequence: AATTYDGAARTAWW Reverse complement motif 0.500000 0.000000 0.000000 0.500000 0.375000 0.000000 0.000000 0.625000 0.000000 0.000000 0.000000 1.000000 0.625000 0.125000 0.000000 0.250000 0.000000 0.125000 0.375000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.125000 0.000000 0.875000 0.000000 0.875000 0.000000 0.125000 0.250000 0.000000 0.250000 0.500000 0.000000 0.000000 0.500000 0.500000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.250000 0.000000 0.000000 0.750000 Consensus sequence: WWTAKTTCDKAATT Alignment: AATTYDGAARTAWW HCAGAATGTHD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 1 Motif name: Motif 1 Original motif 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.148148 0.000000 0.851852 0.000000 0.000000 1.000000 0.000000 0.000000 Consensus sequence: GGCGGGGC Reverse complement motif 0.000000 0.000000 1.000000 0.000000 0.148148 0.851852 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 Consensus sequence: GCCCCGCC *************************************************************** Best Matches for Top Significant Motif ID 1 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 36 csGCCCCGCCCCsc Reverse Complement Original Motif Forward 3 8 0.000000 Original motif 0.179104 0.492537 0.164179 0.164179 0.223881 0.402985 0.283582 0.089552 0.014925 0.014925 0.895522 0.074627 0.000000 0.895522 0.089552 0.014925 0.000000 0.925373 0.014925 0.059701 0.029851 0.970149 0.000000 0.000000 0.000000 0.970149 0.029851 0.000000 0.044776 0.000000 0.940299 0.014925 0.000000 0.955224 0.014925 0.029851 0.029851 0.955224 0.014925 0.000000 0.029851 0.925373 0.014925 0.029851 0.119403 0.820896 0.014925 0.044776 0.104478 0.328358 0.373134 0.194030 0.179104 0.358209 0.223881 0.238806 Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif 0.179104 0.223881 0.358209 0.238806 0.104478 0.373134 0.328358 0.194030 0.119403 0.014925 0.820896 0.044776 0.029851 0.014925 0.925373 0.029851 0.029851 0.014925 0.955224 0.000000 0.000000 0.014925 0.955224 0.029851 0.044776 0.940299 0.000000 0.014925 0.000000 0.029851 0.970149 0.000000 0.029851 0.000000 0.970149 0.000000 0.000000 0.014925 0.925373 0.059701 0.000000 0.089552 0.895522 0.014925 0.014925 0.895522 0.014925 0.074627 0.223881 0.283582 0.402985 0.089552 0.179104 0.164179 0.492537 0.164179 Consensus sequence: BBGGGGCGGGGCVD Alignment: HVGCCCCGCCCCBB --GCCCCGCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 38 cccGCCCCGCCCCsb Reverse Complement Original Motif Forward 4 8 0.002501 Original motif 0.148936 0.425532 0.234043 0.191489 0.106383 0.553191 0.170213 0.170213 0.106383 0.659574 0.148936 0.085106 0.042553 0.000000 0.851064 0.106383 0.000000 0.936170 0.063830 0.000000 0.000000 0.872340 0.042553 0.085106 0.000000 1.000000 0.000000 0.000000 0.000000 0.957447 0.042553 0.000000 0.021277 0.021277 0.957447 0.000000 0.000000 0.957447 0.021277 0.021277 0.042553 0.936170 0.021277 0.000000 0.021277 0.957447 0.021277 0.000000 0.063830 0.914894 0.021277 0.000000 0.063830 0.297872 0.404255 0.234043 0.148936 0.319149 0.255319 0.276596 Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif 0.148936 0.255319 0.319149 0.276596 0.063830 0.404255 0.297872 0.234043 0.063830 0.021277 0.914894 0.000000 0.021277 0.021277 0.957447 0.000000 0.042553 0.021277 0.936170 0.000000 0.000000 0.021277 0.957447 0.021277 0.021277 0.957447 0.021277 0.000000 0.000000 0.042553 0.957447 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.042553 0.872340 0.085106 0.000000 0.063830 0.936170 0.000000 0.042553 0.851064 0.000000 0.106383 0.106383 0.148936 0.659574 0.085106 0.106383 0.170213 0.553191 0.170213 0.148936 0.234043 0.425532 0.191489 Consensus sequence: BBGGGGCGGGGCGGB Alignment: BCCGCCCCGCCCCBB ---GCCCCGCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 7 Motif 7 Reverse Complement Original Motif Backward 5 8 0.014996 Original motif 0.094340 0.566037 0.113208 0.226415 0.150943 0.547170 0.283019 0.018868 0.018868 0.000000 0.622641 0.358491 0.000000 0.943396 0.056604 0.000000 0.018868 0.811321 0.000000 0.169811 0.018868 0.943396 0.000000 0.037736 0.000000 0.981132 0.018868 0.000000 0.037736 0.000000 0.867924 0.094340 0.018868 0.981132 0.000000 0.000000 0.075472 0.924528 0.000000 0.000000 0.000000 0.830189 0.000000 0.169811 0.132075 0.773585 0.000000 0.094340 0.000000 0.433962 0.377358 0.188679 0.075472 0.358491 0.075472 0.490566 Consensus sequence: CSKCCCCGCCCCSY Reverse complement motif 0.490566 0.358491 0.075472 0.075472 0.000000 0.377358 0.433962 0.188679 0.132075 0.000000 0.773585 0.094340 0.000000 0.000000 0.830189 0.169811 0.075472 0.000000 0.924528 0.000000 0.018868 0.000000 0.981132 0.000000 0.037736 0.867924 0.000000 0.094340 0.000000 0.018868 0.981132 0.000000 0.018868 0.000000 0.943396 0.037736 0.018868 0.000000 0.811321 0.169811 0.000000 0.056604 0.943396 0.000000 0.018868 0.622641 0.000000 0.358491 0.150943 0.283019 0.547170 0.018868 0.094340 0.113208 0.566037 0.226415 Consensus sequence: MSGGGGCGGGGYSG Alignment: CSKCCCCGCCCCSY --GCCCCGCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 5 50 TFF11 Original Motif Original Motif Backward 1 8 0.034897 Original motif 0.076190 0.085714 0.819048 0.019048 0.076190 0.066667 0.780952 0.076190 0.438095 0.323810 0.180952 0.057143 0.123810 0.180952 0.657143 0.038095 0.095238 0.076190 0.790476 0.038095 0.371429 0.104762 0.485714 0.038095 0.019048 0.038095 0.914286 0.028571 0.019048 0.095238 0.885714 0.000000 0.057143 0.866667 0.066667 0.009524 0.009524 0.009524 0.980952 0.000000 0.047619 0.104762 0.838095 0.009524 0.333333 0.161905 0.409524 0.095238 0.019048 0.009524 0.952381 0.019048 0.114286 0.580952 0.266667 0.038095 Consensus sequence: GGMGGRGGCGGVGC Reverse complement motif 0.114286 0.266667 0.580952 0.038095 0.019048 0.952381 0.009524 0.019048 0.333333 0.409524 0.161905 0.095238 0.047619 0.838095 0.104762 0.009524 0.009524 0.980952 0.009524 0.000000 0.057143 0.066667 0.866667 0.009524 0.019048 0.885714 0.095238 0.000000 0.019048 0.914286 0.038095 0.028571 0.371429 0.485714 0.104762 0.038095 0.095238 0.790476 0.076190 0.038095 0.123810 0.657143 0.180952 0.038095 0.057143 0.323810 0.180952 0.438095 0.076190 0.780952 0.066667 0.076190 0.076190 0.819048 0.085714 0.019048 Consensus sequence: GCVCCGCCMCCYCC Alignment: GGMGGRGGCGGVGC ------GGCGGGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 27 Klf4 Original Motif Original Motif Forward 3 8 0.034998 Original motif 0.338561 0.018681 0.235701 0.407057 0.020276 0.002074 0.976267 0.001382 0.003223 0.002993 0.990792 0.002993 0.003221 0.008282 0.984817 0.003681 0.063693 0.441941 0.002529 0.491837 0.005064 0.003453 0.983656 0.007827 0.009671 0.018420 0.501727 0.470182 0.060872 0.010606 0.899700 0.028822 0.028400 0.030016 0.874856 0.066728 0.058742 0.660962 0.064755 0.215541 Consensus sequence: DGGGYGKGGC Reverse complement motif 0.058742 0.064755 0.660962 0.215541 0.028400 0.874856 0.030016 0.066728 0.060872 0.899700 0.010606 0.028822 0.009671 0.501727 0.018420 0.470182 0.005064 0.983656 0.003453 0.007827 0.491837 0.441941 0.002529 0.063693 0.003221 0.984817 0.008282 0.003681 0.003223 0.990792 0.002993 0.002993 0.020276 0.976267 0.002074 0.001382 0.407057 0.018681 0.235701 0.338561 Consensus sequence: GCCYCMCCCD Alignment: DGGGYGKGGC --GGCGGGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 22 Zfx Reverse Complement Reverse Complement Forward 4 8 0.070822 Original motif 0.105042 0.371849 0.376050 0.147059 0.125786 0.356394 0.360587 0.157233 0.190377 0.315900 0.416318 0.077406 0.150313 0.102296 0.622129 0.125261 0.020790 0.617464 0.299376 0.062370 0.012474 0.752599 0.004158 0.230769 0.062370 0.259875 0.378378 0.299376 0.397089 0.320166 0.251559 0.031185 0.018711 0.004158 0.975052 0.002079 0.000000 0.006237 0.991684 0.002079 0.002079 0.997921 0.000000 0.000000 0.000000 0.997921 0.000000 0.002079 0.000000 0.004158 0.000000 0.995842 0.174636 0.253638 0.455301 0.116424 Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif 0.174636 0.455301 0.253638 0.116424 0.995842 0.004158 0.000000 0.000000 0.000000 0.000000 0.997921 0.002079 0.002079 0.000000 0.997921 0.000000 0.000000 0.991684 0.006237 0.002079 0.018711 0.975052 0.004158 0.002079 0.031185 0.320166 0.251559 0.397089 0.062370 0.378378 0.259875 0.299376 0.012474 0.004158 0.752599 0.230769 0.020790 0.299376 0.617464 0.062370 0.150313 0.622129 0.102296 0.125261 0.190377 0.416318 0.315900 0.077406 0.125786 0.360587 0.356394 0.157233 0.105042 0.376050 0.371849 0.147059 Consensus sequence: VAGGCCBBGGCVBB Alignment: VAGGCCBBGGCVBB ---GCCCCGCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 11-21-2023 10:01:18 Runtime: 65.835603 seconds MOTIFSIM is written by Ngoc Tam L. 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