**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 2 Number of top significant motifs: 1 Number of best matches: 1 Similarity cutoff: >= 0.75 Matching motif database: Jaspar Core Motif tree: No Combined similar motifs: No Output file type: All Output file format: Text Input files and motif counts File name Count of motifs Dataset # U20231122_R_11-22-23_4485_InsertFile1.txt 1 1 U20231122_R_11-22-23_4485_InsertFile2.txt 1 2 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ********************************************************************** Best Matches in Database for Each Motif (Highest to Lowest) ***************************************************************** Dataset #: 1 Motif ID: 1 Motif name: Motif 1 Consensus sequence (original motif): DHDHBGTACGGAHDH Consensus sequence (reverse complement motif): HDHTCCGTACVHDHD ************************************************************************ Best Matches for Motif ID 1 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0586.1 SPL14 Reverse Complement Original Motif Backward 3 15 0.013611 Taxon: Plants Consensus sequence (original motif): BBBHBTCCGTACRDDDBBG Consensus sequence (reverse complement motif): CBBDHHKGTACGGABDBBV Alignment: BBBHBTCCGTACRDDDBBG --HDHTCCGTACVHDHD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 2 Motif name: Motif 2 Consensus sequence (original motif): DHDHBGTACGGAHDH Consensus sequence (reverse complement motif): HDHTCCGTACVHDHD ************************************************************************ Best Matches for Motif ID 2 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0586.1 SPL14 Reverse Complement Original Motif Backward 3 15 0.013611 Taxon: Plants Consensus sequence (original motif): BBBHBTCCGTACRDDDBBG Consensus sequence (reverse complement motif): CBBDHHKGTACGGABDBBV Alignment: BBBHBTCCGTACRDDDBBG --HDHTCCGTACVHDHD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 11-22-2023 17:14:53 Runtime: 9.42766 seconds MOTIFSIM is written by Ngoc Tam L. Tran