**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 2 Number of top significant motifs: 1 Number of best matches: 1 Similarity cutoff: >= 0.75 Matching motif database: Jaspar Core Motif tree: No Combined similar motifs: No Output file type: All Output file format: Text Input files and motif counts File name Count of motifs Dataset # U20231122_R_11-22-23_4914_InsertFile1.txt 1 1 U20231122_R_11-22-23_4914_InsertFile2.txt 1 2 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ****************************************************************** Top 1 Significant Motifs - Global Matching (Highest to Lowest) ****************************************************************** Dataset #: 1 Motif ID: 1 Motif name: NA Original motif 0.291000 0.189000 0.231000 0.289000 0.348000 0.201000 0.199000 0.252000 0.372000 0.156000 0.179000 0.293000 0.234000 0.226000 0.171000 0.369000 0.118000 0.265000 0.138000 0.479000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.997000 0.001000 0.755000 0.011000 0.001000 0.233000 0.335000 0.286000 0.121000 0.258000 0.304000 0.218000 0.248000 0.230000 0.350000 0.219000 0.178000 0.253000 Consensus sequence: DHDHBGTACGGAHDH Reverse complement motif 0.253000 0.219000 0.178000 0.350000 0.230000 0.218000 0.248000 0.304000 0.258000 0.286000 0.121000 0.335000 0.233000 0.011000 0.001000 0.755000 0.001000 0.997000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.479000 0.265000 0.138000 0.118000 0.369000 0.226000 0.171000 0.234000 0.293000 0.156000 0.179000 0.372000 0.252000 0.201000 0.199000 0.348000 0.289000 0.189000 0.231000 0.291000 Consensus sequence: HDHTCCGTACVHDHD *************************************************************** Best Matches for Top Significant Motif ID 1 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 2 NA Original Motif Original Motif Forward 1 15 0.000000 Original motif 0.291000 0.189000 0.231000 0.289000 0.348000 0.201000 0.199000 0.252000 0.372000 0.156000 0.179000 0.293000 0.234000 0.226000 0.171000 0.369000 0.118000 0.265000 0.138000 0.479000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.997000 0.001000 0.755000 0.011000 0.001000 0.233000 0.335000 0.286000 0.121000 0.258000 0.304000 0.218000 0.248000 0.230000 0.350000 0.219000 0.178000 0.253000 Consensus sequence: DHDHBGTACGGAHDH Reverse complement motif 0.253000 0.219000 0.178000 0.350000 0.230000 0.218000 0.248000 0.304000 0.258000 0.286000 0.121000 0.335000 0.233000 0.011000 0.001000 0.755000 0.001000 0.997000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.479000 0.265000 0.138000 0.118000 0.369000 0.226000 0.171000 0.234000 0.293000 0.156000 0.179000 0.372000 0.252000 0.201000 0.199000 0.348000 0.289000 0.189000 0.231000 0.291000 Consensus sequence: HDHTCCGTACVHDHD Alignment: DHDHBGTACGGAHDH DHDHBGTACGGAHDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- **************************************************************************************************************************************************************************************************** **************************************************************** Significant Motifs - Global and Local Matching (Highest to Lowest) **************************************************************** Dataset #: 1 Motif ID: 1 Motif name: NA Original motif 0.291000 0.189000 0.231000 0.289000 0.348000 0.201000 0.199000 0.252000 0.372000 0.156000 0.179000 0.293000 0.234000 0.226000 0.171000 0.369000 0.118000 0.265000 0.138000 0.479000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.997000 0.001000 0.755000 0.011000 0.001000 0.233000 0.335000 0.286000 0.121000 0.258000 0.304000 0.218000 0.248000 0.230000 0.350000 0.219000 0.178000 0.253000 Consensus sequence: DHDHBGTACGGAHDH Reverse complement motif 0.253000 0.219000 0.178000 0.350000 0.230000 0.218000 0.248000 0.304000 0.258000 0.286000 0.121000 0.335000 0.233000 0.011000 0.001000 0.755000 0.001000 0.997000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.479000 0.265000 0.138000 0.118000 0.369000 0.226000 0.171000 0.234000 0.293000 0.156000 0.179000 0.372000 0.252000 0.201000 0.199000 0.348000 0.289000 0.189000 0.231000 0.291000 Consensus sequence: HDHTCCGTACVHDHD ******************************************************************* Best Matches for Significant Motif ID 1 (Highest to Lowest) ******************************************************************* Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 2 NA Original Motif Original Motif Forward 1 15 0.000000 Original motif 0.291000 0.189000 0.231000 0.289000 0.348000 0.201000 0.199000 0.252000 0.372000 0.156000 0.179000 0.293000 0.234000 0.226000 0.171000 0.369000 0.118000 0.265000 0.138000 0.479000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.997000 0.001000 0.755000 0.011000 0.001000 0.233000 0.335000 0.286000 0.121000 0.258000 0.304000 0.218000 0.248000 0.230000 0.350000 0.219000 0.178000 0.253000 Consensus sequence: DHDHBGTACGGAHDH Reverse complement motif 0.253000 0.219000 0.178000 0.350000 0.230000 0.218000 0.248000 0.304000 0.258000 0.286000 0.121000 0.335000 0.233000 0.011000 0.001000 0.755000 0.001000 0.997000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.479000 0.265000 0.138000 0.118000 0.369000 0.226000 0.171000 0.234000 0.293000 0.156000 0.179000 0.372000 0.252000 0.201000 0.199000 0.348000 0.289000 0.189000 0.231000 0.291000 Consensus sequence: HDHTCCGTACVHDHD Alignment: DHDHBGTACGGAHDH DHDHBGTACGGAHDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- **************************************************************************************************************************************************************************************************** ********************************************************************** Best Matches for Each Motif (Highest to Lowest) ***************************************************************************** Dataset #: 1 Motif ID: 1 Motif name: NA Original motif 0.291000 0.189000 0.231000 0.289000 0.348000 0.201000 0.199000 0.252000 0.372000 0.156000 0.179000 0.293000 0.234000 0.226000 0.171000 0.369000 0.118000 0.265000 0.138000 0.479000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.997000 0.001000 0.755000 0.011000 0.001000 0.233000 0.335000 0.286000 0.121000 0.258000 0.304000 0.218000 0.248000 0.230000 0.350000 0.219000 0.178000 0.253000 Consensus sequence: DHDHBGTACGGAHDH Reserve complement motif 0.253000 0.219000 0.178000 0.350000 0.230000 0.218000 0.248000 0.304000 0.258000 0.286000 0.121000 0.335000 0.233000 0.011000 0.001000 0.755000 0.001000 0.997000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.479000 0.265000 0.138000 0.118000 0.369000 0.226000 0.171000 0.234000 0.293000 0.156000 0.179000 0.372000 0.252000 0.201000 0.199000 0.348000 0.289000 0.189000 0.231000 0.291000 Consensus sequence: HDHTCCGTACVHDHD ************************************************************************ Best Matches for Motif ID 1 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 2 NA Original Motif Original Motif Forward 1 15 0.000000 Original motif 0.291000 0.189000 0.231000 0.289000 0.348000 0.201000 0.199000 0.252000 0.372000 0.156000 0.179000 0.293000 0.234000 0.226000 0.171000 0.369000 0.118000 0.265000 0.138000 0.479000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.997000 0.001000 0.755000 0.011000 0.001000 0.233000 0.335000 0.286000 0.121000 0.258000 0.304000 0.218000 0.248000 0.230000 0.350000 0.219000 0.178000 0.253000 Consensus sequence: DHDHBGTACGGAHDH Reverse complement motif 0.253000 0.219000 0.178000 0.350000 0.230000 0.218000 0.248000 0.304000 0.258000 0.286000 0.121000 0.335000 0.233000 0.011000 0.001000 0.755000 0.001000 0.997000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.479000 0.265000 0.138000 0.118000 0.369000 0.226000 0.171000 0.234000 0.293000 0.156000 0.179000 0.372000 0.252000 0.201000 0.199000 0.348000 0.289000 0.189000 0.231000 0.291000 Consensus sequence: HDHTCCGTACVHDHD Alignment: DHDHBGTACGGAHDH DHDHBGTACGGAHDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 2 Motif name: NA Original motif 0.291000 0.189000 0.231000 0.289000 0.348000 0.201000 0.199000 0.252000 0.372000 0.156000 0.179000 0.293000 0.234000 0.226000 0.171000 0.369000 0.118000 0.265000 0.138000 0.479000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.997000 0.001000 0.755000 0.011000 0.001000 0.233000 0.335000 0.286000 0.121000 0.258000 0.304000 0.218000 0.248000 0.230000 0.350000 0.219000 0.178000 0.253000 Consensus sequence: DHDHBGTACGGAHDH Reserve complement motif 0.253000 0.219000 0.178000 0.350000 0.230000 0.218000 0.248000 0.304000 0.258000 0.286000 0.121000 0.335000 0.233000 0.011000 0.001000 0.755000 0.001000 0.997000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.479000 0.265000 0.138000 0.118000 0.369000 0.226000 0.171000 0.234000 0.293000 0.156000 0.179000 0.372000 0.252000 0.201000 0.199000 0.348000 0.289000 0.189000 0.231000 0.291000 Consensus sequence: HDHTCCGTACVHDHD ************************************************************************ Best Matches for Motif ID 2 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 NA Original Motif Original Motif Forward 1 15 0.000000 Original motif 0.291000 0.189000 0.231000 0.289000 0.348000 0.201000 0.199000 0.252000 0.372000 0.156000 0.179000 0.293000 0.234000 0.226000 0.171000 0.369000 0.118000 0.265000 0.138000 0.479000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.997000 0.001000 0.755000 0.011000 0.001000 0.233000 0.335000 0.286000 0.121000 0.258000 0.304000 0.218000 0.248000 0.230000 0.350000 0.219000 0.178000 0.253000 Consensus sequence: DHDHBGTACGGAHDH Reverse complement motif 0.253000 0.219000 0.178000 0.350000 0.230000 0.218000 0.248000 0.304000 0.258000 0.286000 0.121000 0.335000 0.233000 0.011000 0.001000 0.755000 0.001000 0.997000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.479000 0.265000 0.138000 0.118000 0.369000 0.226000 0.171000 0.234000 0.293000 0.156000 0.179000 0.372000 0.252000 0.201000 0.199000 0.348000 0.289000 0.189000 0.231000 0.291000 Consensus sequence: HDHTCCGTACVHDHD Alignment: DHDHBGTACGGAHDH DHDHBGTACGGAHDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 11-22-2023 16:24:09 Runtime: 9.628758 seconds MOTIFSIM is written by Ngoc Tam L. Tran