**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 2 Number of top significant motifs: 1 Number of best matches: 1 Similarity cutoff: >= 0.75 Matching motif database: Jaspar Core Motif tree: No Combined similar motifs: No Output file type: All Output file format: Text Input files and motif counts File name Count of motifs Dataset # U20231122_R_11-22-23_4914_InsertFile1.txt 1 1 U20231122_R_11-22-23_4914_InsertFile2.txt 1 2 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ********************************************************************** Best Matches in Database for Each Motif (Highest to Lowest) ***************************************************************** Dataset #: 1 Motif ID: 1 Motif name: NA Original motif 0.291000 0.189000 0.231000 0.289000 0.348000 0.201000 0.199000 0.252000 0.372000 0.156000 0.179000 0.293000 0.234000 0.226000 0.171000 0.369000 0.118000 0.265000 0.138000 0.479000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.997000 0.001000 0.755000 0.011000 0.001000 0.233000 0.335000 0.286000 0.121000 0.258000 0.304000 0.218000 0.248000 0.230000 0.350000 0.219000 0.178000 0.253000 Consensus sequence: DHDHBGTACGGAHDH Reserve complement motif 0.253000 0.219000 0.178000 0.350000 0.230000 0.218000 0.248000 0.304000 0.258000 0.286000 0.121000 0.335000 0.233000 0.011000 0.001000 0.755000 0.001000 0.997000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.479000 0.265000 0.138000 0.118000 0.369000 0.226000 0.171000 0.234000 0.293000 0.156000 0.179000 0.372000 0.252000 0.201000 0.199000 0.348000 0.289000 0.189000 0.231000 0.291000 Consensus sequence: HDHTCCGTACVHDHD ************************************************************************ Best Matches for Motif ID 1 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0586.1 SPL14 Reverse Complement Original Motif Backward 3 15 0.013611 Taxon: Plants Original motif 0.100000 0.250000 0.200000 0.450000 0.200000 0.300000 0.200000 0.300000 0.200000 0.250000 0.300000 0.250000 0.200000 0.400000 0.050000 0.350000 0.150000 0.200000 0.450000 0.200000 0.150000 0.050000 0.200000 0.600000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.000000 0.400000 0.000000 0.300000 0.150000 0.400000 0.150000 0.200000 0.150000 0.350000 0.300000 0.400000 0.150000 0.250000 0.200000 0.150000 0.200000 0.400000 0.250000 0.150000 0.300000 0.400000 0.150000 0.250000 0.050000 0.550000 0.150000 Consensus sequence: BBBHBTCCGTACRDDDBBG Reverse complement motif 0.250000 0.550000 0.050000 0.150000 0.150000 0.400000 0.300000 0.150000 0.150000 0.400000 0.200000 0.250000 0.200000 0.150000 0.250000 0.400000 0.200000 0.350000 0.150000 0.300000 0.300000 0.400000 0.150000 0.150000 0.000000 0.000000 0.400000 0.600000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.600000 0.050000 0.200000 0.150000 0.150000 0.450000 0.200000 0.200000 0.200000 0.050000 0.400000 0.350000 0.200000 0.300000 0.250000 0.250000 0.200000 0.200000 0.300000 0.300000 0.450000 0.250000 0.200000 0.100000 Consensus sequence: CBBDHHKGTACGGABDBBV Alignment: BBBHBTCCGTACRDDDBBG --HDHTCCGTACVHDHD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 2 Motif name: NA Original motif 0.291000 0.189000 0.231000 0.289000 0.348000 0.201000 0.199000 0.252000 0.372000 0.156000 0.179000 0.293000 0.234000 0.226000 0.171000 0.369000 0.118000 0.265000 0.138000 0.479000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.997000 0.001000 0.755000 0.011000 0.001000 0.233000 0.335000 0.286000 0.121000 0.258000 0.304000 0.218000 0.248000 0.230000 0.350000 0.219000 0.178000 0.253000 Consensus sequence: DHDHBGTACGGAHDH Reserve complement motif 0.253000 0.219000 0.178000 0.350000 0.230000 0.218000 0.248000 0.304000 0.258000 0.286000 0.121000 0.335000 0.233000 0.011000 0.001000 0.755000 0.001000 0.997000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.997000 0.001000 0.001000 0.001000 0.001000 0.997000 0.001000 0.001000 0.479000 0.265000 0.138000 0.118000 0.369000 0.226000 0.171000 0.234000 0.293000 0.156000 0.179000 0.372000 0.252000 0.201000 0.199000 0.348000 0.289000 0.189000 0.231000 0.291000 Consensus sequence: HDHTCCGTACVHDHD ************************************************************************ Best Matches for Motif ID 2 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0586.1 SPL14 Reverse Complement Original Motif Backward 3 15 0.013611 Taxon: Plants Original motif 0.100000 0.250000 0.200000 0.450000 0.200000 0.300000 0.200000 0.300000 0.200000 0.250000 0.300000 0.250000 0.200000 0.400000 0.050000 0.350000 0.150000 0.200000 0.450000 0.200000 0.150000 0.050000 0.200000 0.600000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.000000 0.400000 0.000000 0.300000 0.150000 0.400000 0.150000 0.200000 0.150000 0.350000 0.300000 0.400000 0.150000 0.250000 0.200000 0.150000 0.200000 0.400000 0.250000 0.150000 0.300000 0.400000 0.150000 0.250000 0.050000 0.550000 0.150000 Consensus sequence: BBBHBTCCGTACRDDDBBG Reverse complement motif 0.250000 0.550000 0.050000 0.150000 0.150000 0.400000 0.300000 0.150000 0.150000 0.400000 0.200000 0.250000 0.200000 0.150000 0.250000 0.400000 0.200000 0.350000 0.150000 0.300000 0.300000 0.400000 0.150000 0.150000 0.000000 0.000000 0.400000 0.600000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.600000 0.050000 0.200000 0.150000 0.150000 0.450000 0.200000 0.200000 0.200000 0.050000 0.400000 0.350000 0.200000 0.300000 0.250000 0.250000 0.200000 0.200000 0.300000 0.300000 0.450000 0.250000 0.200000 0.100000 Consensus sequence: CBBDHHKGTACGGABDBBV Alignment: BBBHBTCCGTACRDDDBBG --HDHTCCGTACVHDHD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 11-22-2023 16:24:09 Runtime: 9.628758 seconds MOTIFSIM is written by Ngoc Tam L. 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