**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 2 Number of top significant motifs: 1 Number of best matches: 1 Similarity cutoff: >= 0.75 Matching motif database: Jaspar Core Motif tree: No Combined similar motifs: No Output file type: All Output file format: Text Input files and motif counts File name Count of motifs Dataset # U20231123_R_11-23-23_7545_InsertFile1.txt 1 1 U20231123_R_11-23-23_7545_InsertFile2.txt 1 2 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ****************************************************************** Top 1 Significant Motifs - Global Matching (Highest to Lowest) ****************************************************************** Dataset #: 1 Motif ID: 1 Motif name: Motif 1 Original motif 0.196000 0.264000 0.254000 0.286000 0.206000 0.234000 0.420000 0.140000 0.264000 0.059000 0.247000 0.430000 0.316000 0.019000 0.655000 0.010000 0.157000 0.234000 0.218000 0.391000 0.001000 0.185000 0.305000 0.509000 0.117000 0.667000 0.001000 0.215000 0.863000 0.001000 0.117000 0.019000 0.234000 0.364000 0.284000 0.118000 0.001000 0.185000 0.001000 0.813000 0.001000 0.557000 0.423000 0.019000 0.811000 0.001000 0.187000 0.001000 0.520000 0.001000 0.166000 0.313000 0.001000 0.175000 0.823000 0.001000 0.001000 0.746000 0.009000 0.244000 0.342000 0.001000 0.609000 0.048000 0.049000 0.068000 0.462000 0.421000 0.657000 0.001000 0.303000 0.039000 0.756000 0.166000 0.010000 0.068000 0.501000 0.137000 0.274000 0.088000 Consensus sequence: BVDGBKCAVTSAWGCRKAAR Reverse complement motif 0.088000 0.137000 0.274000 0.501000 0.068000 0.166000 0.010000 0.756000 0.039000 0.001000 0.303000 0.657000 0.049000 0.462000 0.068000 0.421000 0.342000 0.609000 0.001000 0.048000 0.001000 0.009000 0.746000 0.244000 0.001000 0.823000 0.175000 0.001000 0.313000 0.001000 0.166000 0.520000 0.001000 0.001000 0.187000 0.811000 0.001000 0.423000 0.557000 0.019000 0.813000 0.185000 0.001000 0.001000 0.234000 0.284000 0.364000 0.118000 0.019000 0.001000 0.117000 0.863000 0.117000 0.001000 0.667000 0.215000 0.509000 0.185000 0.305000 0.001000 0.391000 0.234000 0.218000 0.157000 0.316000 0.655000 0.019000 0.010000 0.430000 0.059000 0.247000 0.264000 0.206000 0.420000 0.234000 0.140000 0.286000 0.264000 0.254000 0.196000 Consensus sequence: KTTYMGCWTSAVTGRVCDVV *************************************************************** Best Matches for Top Significant Motif ID 1 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 2 Motif 2 Original Motif Original Motif Backward 1 20 0.000000 Original motif 0.196000 0.264000 0.254000 0.286000 0.206000 0.234000 0.420000 0.140000 0.264000 0.059000 0.247000 0.430000 0.316000 0.019000 0.655000 0.010000 0.157000 0.234000 0.218000 0.391000 0.001000 0.185000 0.305000 0.509000 0.117000 0.667000 0.001000 0.215000 0.863000 0.001000 0.117000 0.019000 0.234000 0.364000 0.284000 0.118000 0.001000 0.185000 0.001000 0.813000 0.001000 0.557000 0.423000 0.019000 0.811000 0.001000 0.187000 0.001000 0.520000 0.001000 0.166000 0.313000 0.001000 0.175000 0.823000 0.001000 0.001000 0.746000 0.009000 0.244000 0.342000 0.001000 0.609000 0.048000 0.049000 0.068000 0.462000 0.421000 0.657000 0.001000 0.303000 0.039000 0.756000 0.166000 0.010000 0.068000 0.501000 0.137000 0.274000 0.088000 Consensus sequence: BVDGBKCAVTSAWGCRKAAR Reverse complement motif 0.088000 0.137000 0.274000 0.501000 0.068000 0.166000 0.010000 0.756000 0.039000 0.001000 0.303000 0.657000 0.049000 0.462000 0.068000 0.421000 0.342000 0.609000 0.001000 0.048000 0.001000 0.009000 0.746000 0.244000 0.001000 0.823000 0.175000 0.001000 0.313000 0.001000 0.166000 0.520000 0.001000 0.001000 0.187000 0.811000 0.001000 0.423000 0.557000 0.019000 0.813000 0.185000 0.001000 0.001000 0.234000 0.284000 0.364000 0.118000 0.019000 0.001000 0.117000 0.863000 0.117000 0.001000 0.667000 0.215000 0.509000 0.185000 0.305000 0.001000 0.391000 0.234000 0.218000 0.157000 0.316000 0.655000 0.019000 0.010000 0.430000 0.059000 0.247000 0.264000 0.206000 0.420000 0.234000 0.140000 0.286000 0.264000 0.254000 0.196000 Consensus sequence: KTTYMGCWTSAVTGRVCDVV Alignment: BVDGBKCAVTSAWGCRKAAR BVDGBKCAVTSAWGCRKAAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- **************************************************************************************************************************************************************************************************** **************************************************************** Significant Motifs - Global and Local Matching (Highest to Lowest) **************************************************************** Dataset #: 1 Motif ID: 1 Motif name: Motif 1 Original motif 0.196000 0.264000 0.254000 0.286000 0.206000 0.234000 0.420000 0.140000 0.264000 0.059000 0.247000 0.430000 0.316000 0.019000 0.655000 0.010000 0.157000 0.234000 0.218000 0.391000 0.001000 0.185000 0.305000 0.509000 0.117000 0.667000 0.001000 0.215000 0.863000 0.001000 0.117000 0.019000 0.234000 0.364000 0.284000 0.118000 0.001000 0.185000 0.001000 0.813000 0.001000 0.557000 0.423000 0.019000 0.811000 0.001000 0.187000 0.001000 0.520000 0.001000 0.166000 0.313000 0.001000 0.175000 0.823000 0.001000 0.001000 0.746000 0.009000 0.244000 0.342000 0.001000 0.609000 0.048000 0.049000 0.068000 0.462000 0.421000 0.657000 0.001000 0.303000 0.039000 0.756000 0.166000 0.010000 0.068000 0.501000 0.137000 0.274000 0.088000 Consensus sequence: BVDGBKCAVTSAWGCRKAAR Reverse complement motif 0.088000 0.137000 0.274000 0.501000 0.068000 0.166000 0.010000 0.756000 0.039000 0.001000 0.303000 0.657000 0.049000 0.462000 0.068000 0.421000 0.342000 0.609000 0.001000 0.048000 0.001000 0.009000 0.746000 0.244000 0.001000 0.823000 0.175000 0.001000 0.313000 0.001000 0.166000 0.520000 0.001000 0.001000 0.187000 0.811000 0.001000 0.423000 0.557000 0.019000 0.813000 0.185000 0.001000 0.001000 0.234000 0.284000 0.364000 0.118000 0.019000 0.001000 0.117000 0.863000 0.117000 0.001000 0.667000 0.215000 0.509000 0.185000 0.305000 0.001000 0.391000 0.234000 0.218000 0.157000 0.316000 0.655000 0.019000 0.010000 0.430000 0.059000 0.247000 0.264000 0.206000 0.420000 0.234000 0.140000 0.286000 0.264000 0.254000 0.196000 Consensus sequence: KTTYMGCWTSAVTGRVCDVV ******************************************************************* Best Matches for Significant Motif ID 1 (Highest to Lowest) ******************************************************************* Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 2 Motif 2 Original Motif Original Motif Backward 1 20 0.000000 Original motif 0.196000 0.264000 0.254000 0.286000 0.206000 0.234000 0.420000 0.140000 0.264000 0.059000 0.247000 0.430000 0.316000 0.019000 0.655000 0.010000 0.157000 0.234000 0.218000 0.391000 0.001000 0.185000 0.305000 0.509000 0.117000 0.667000 0.001000 0.215000 0.863000 0.001000 0.117000 0.019000 0.234000 0.364000 0.284000 0.118000 0.001000 0.185000 0.001000 0.813000 0.001000 0.557000 0.423000 0.019000 0.811000 0.001000 0.187000 0.001000 0.520000 0.001000 0.166000 0.313000 0.001000 0.175000 0.823000 0.001000 0.001000 0.746000 0.009000 0.244000 0.342000 0.001000 0.609000 0.048000 0.049000 0.068000 0.462000 0.421000 0.657000 0.001000 0.303000 0.039000 0.756000 0.166000 0.010000 0.068000 0.501000 0.137000 0.274000 0.088000 Consensus sequence: BVDGBKCAVTSAWGCRKAAR Reverse complement motif 0.088000 0.137000 0.274000 0.501000 0.068000 0.166000 0.010000 0.756000 0.039000 0.001000 0.303000 0.657000 0.049000 0.462000 0.068000 0.421000 0.342000 0.609000 0.001000 0.048000 0.001000 0.009000 0.746000 0.244000 0.001000 0.823000 0.175000 0.001000 0.313000 0.001000 0.166000 0.520000 0.001000 0.001000 0.187000 0.811000 0.001000 0.423000 0.557000 0.019000 0.813000 0.185000 0.001000 0.001000 0.234000 0.284000 0.364000 0.118000 0.019000 0.001000 0.117000 0.863000 0.117000 0.001000 0.667000 0.215000 0.509000 0.185000 0.305000 0.001000 0.391000 0.234000 0.218000 0.157000 0.316000 0.655000 0.019000 0.010000 0.430000 0.059000 0.247000 0.264000 0.206000 0.420000 0.234000 0.140000 0.286000 0.264000 0.254000 0.196000 Consensus sequence: KTTYMGCWTSAVTGRVCDVV Alignment: BVDGBKCAVTSAWGCRKAAR BVDGBKCAVTSAWGCRKAAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- **************************************************************************************************************************************************************************************************** ********************************************************************** Best Matches for Each Motif (Highest to Lowest) ***************************************************************************** Dataset #: 1 Motif ID: 1 Motif name: Motif 1 Original motif 0.196000 0.264000 0.254000 0.286000 0.206000 0.234000 0.420000 0.140000 0.264000 0.059000 0.247000 0.430000 0.316000 0.019000 0.655000 0.010000 0.157000 0.234000 0.218000 0.391000 0.001000 0.185000 0.305000 0.509000 0.117000 0.667000 0.001000 0.215000 0.863000 0.001000 0.117000 0.019000 0.234000 0.364000 0.284000 0.118000 0.001000 0.185000 0.001000 0.813000 0.001000 0.557000 0.423000 0.019000 0.811000 0.001000 0.187000 0.001000 0.520000 0.001000 0.166000 0.313000 0.001000 0.175000 0.823000 0.001000 0.001000 0.746000 0.009000 0.244000 0.342000 0.001000 0.609000 0.048000 0.049000 0.068000 0.462000 0.421000 0.657000 0.001000 0.303000 0.039000 0.756000 0.166000 0.010000 0.068000 0.501000 0.137000 0.274000 0.088000 Consensus sequence: BVDGBKCAVTSAWGCRKAAR Reserve complement motif 0.088000 0.137000 0.274000 0.501000 0.068000 0.166000 0.010000 0.756000 0.039000 0.001000 0.303000 0.657000 0.049000 0.462000 0.068000 0.421000 0.342000 0.609000 0.001000 0.048000 0.001000 0.009000 0.746000 0.244000 0.001000 0.823000 0.175000 0.001000 0.313000 0.001000 0.166000 0.520000 0.001000 0.001000 0.187000 0.811000 0.001000 0.423000 0.557000 0.019000 0.813000 0.185000 0.001000 0.001000 0.234000 0.284000 0.364000 0.118000 0.019000 0.001000 0.117000 0.863000 0.117000 0.001000 0.667000 0.215000 0.509000 0.185000 0.305000 0.001000 0.391000 0.234000 0.218000 0.157000 0.316000 0.655000 0.019000 0.010000 0.430000 0.059000 0.247000 0.264000 0.206000 0.420000 0.234000 0.140000 0.286000 0.264000 0.254000 0.196000 Consensus sequence: KTTYMGCWTSAVTGRVCDVV ************************************************************************ Best Matches for Motif ID 1 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 2 Motif 2 Original Motif Original Motif Backward 1 20 0.000000 Original motif 0.196000 0.264000 0.254000 0.286000 0.206000 0.234000 0.420000 0.140000 0.264000 0.059000 0.247000 0.430000 0.316000 0.019000 0.655000 0.010000 0.157000 0.234000 0.218000 0.391000 0.001000 0.185000 0.305000 0.509000 0.117000 0.667000 0.001000 0.215000 0.863000 0.001000 0.117000 0.019000 0.234000 0.364000 0.284000 0.118000 0.001000 0.185000 0.001000 0.813000 0.001000 0.557000 0.423000 0.019000 0.811000 0.001000 0.187000 0.001000 0.520000 0.001000 0.166000 0.313000 0.001000 0.175000 0.823000 0.001000 0.001000 0.746000 0.009000 0.244000 0.342000 0.001000 0.609000 0.048000 0.049000 0.068000 0.462000 0.421000 0.657000 0.001000 0.303000 0.039000 0.756000 0.166000 0.010000 0.068000 0.501000 0.137000 0.274000 0.088000 Consensus sequence: BVDGBKCAVTSAWGCRKAAR Reverse complement motif 0.088000 0.137000 0.274000 0.501000 0.068000 0.166000 0.010000 0.756000 0.039000 0.001000 0.303000 0.657000 0.049000 0.462000 0.068000 0.421000 0.342000 0.609000 0.001000 0.048000 0.001000 0.009000 0.746000 0.244000 0.001000 0.823000 0.175000 0.001000 0.313000 0.001000 0.166000 0.520000 0.001000 0.001000 0.187000 0.811000 0.001000 0.423000 0.557000 0.019000 0.813000 0.185000 0.001000 0.001000 0.234000 0.284000 0.364000 0.118000 0.019000 0.001000 0.117000 0.863000 0.117000 0.001000 0.667000 0.215000 0.509000 0.185000 0.305000 0.001000 0.391000 0.234000 0.218000 0.157000 0.316000 0.655000 0.019000 0.010000 0.430000 0.059000 0.247000 0.264000 0.206000 0.420000 0.234000 0.140000 0.286000 0.264000 0.254000 0.196000 Consensus sequence: KTTYMGCWTSAVTGRVCDVV Alignment: BVDGBKCAVTSAWGCRKAAR BVDGBKCAVTSAWGCRKAAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 2 Motif name: Motif 2 Original motif 0.196000 0.264000 0.254000 0.286000 0.206000 0.234000 0.420000 0.140000 0.264000 0.059000 0.247000 0.430000 0.316000 0.019000 0.655000 0.010000 0.157000 0.234000 0.218000 0.391000 0.001000 0.185000 0.305000 0.509000 0.117000 0.667000 0.001000 0.215000 0.863000 0.001000 0.117000 0.019000 0.234000 0.364000 0.284000 0.118000 0.001000 0.185000 0.001000 0.813000 0.001000 0.557000 0.423000 0.019000 0.811000 0.001000 0.187000 0.001000 0.520000 0.001000 0.166000 0.313000 0.001000 0.175000 0.823000 0.001000 0.001000 0.746000 0.009000 0.244000 0.342000 0.001000 0.609000 0.048000 0.049000 0.068000 0.462000 0.421000 0.657000 0.001000 0.303000 0.039000 0.756000 0.166000 0.010000 0.068000 0.501000 0.137000 0.274000 0.088000 Consensus sequence: BVDGBKCAVTSAWGCRKAAR Reserve complement motif 0.088000 0.137000 0.274000 0.501000 0.068000 0.166000 0.010000 0.756000 0.039000 0.001000 0.303000 0.657000 0.049000 0.462000 0.068000 0.421000 0.342000 0.609000 0.001000 0.048000 0.001000 0.009000 0.746000 0.244000 0.001000 0.823000 0.175000 0.001000 0.313000 0.001000 0.166000 0.520000 0.001000 0.001000 0.187000 0.811000 0.001000 0.423000 0.557000 0.019000 0.813000 0.185000 0.001000 0.001000 0.234000 0.284000 0.364000 0.118000 0.019000 0.001000 0.117000 0.863000 0.117000 0.001000 0.667000 0.215000 0.509000 0.185000 0.305000 0.001000 0.391000 0.234000 0.218000 0.157000 0.316000 0.655000 0.019000 0.010000 0.430000 0.059000 0.247000 0.264000 0.206000 0.420000 0.234000 0.140000 0.286000 0.264000 0.254000 0.196000 Consensus sequence: KTTYMGCWTSAVTGRVCDVV ************************************************************************ Best Matches for Motif ID 2 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 Motif 1 Original Motif Original Motif Backward 1 20 0.000000 Original motif 0.196000 0.264000 0.254000 0.286000 0.206000 0.234000 0.420000 0.140000 0.264000 0.059000 0.247000 0.430000 0.316000 0.019000 0.655000 0.010000 0.157000 0.234000 0.218000 0.391000 0.001000 0.185000 0.305000 0.509000 0.117000 0.667000 0.001000 0.215000 0.863000 0.001000 0.117000 0.019000 0.234000 0.364000 0.284000 0.118000 0.001000 0.185000 0.001000 0.813000 0.001000 0.557000 0.423000 0.019000 0.811000 0.001000 0.187000 0.001000 0.520000 0.001000 0.166000 0.313000 0.001000 0.175000 0.823000 0.001000 0.001000 0.746000 0.009000 0.244000 0.342000 0.001000 0.609000 0.048000 0.049000 0.068000 0.462000 0.421000 0.657000 0.001000 0.303000 0.039000 0.756000 0.166000 0.010000 0.068000 0.501000 0.137000 0.274000 0.088000 Consensus sequence: BVDGBKCAVTSAWGCRKAAR Reverse complement motif 0.088000 0.137000 0.274000 0.501000 0.068000 0.166000 0.010000 0.756000 0.039000 0.001000 0.303000 0.657000 0.049000 0.462000 0.068000 0.421000 0.342000 0.609000 0.001000 0.048000 0.001000 0.009000 0.746000 0.244000 0.001000 0.823000 0.175000 0.001000 0.313000 0.001000 0.166000 0.520000 0.001000 0.001000 0.187000 0.811000 0.001000 0.423000 0.557000 0.019000 0.813000 0.185000 0.001000 0.001000 0.234000 0.284000 0.364000 0.118000 0.019000 0.001000 0.117000 0.863000 0.117000 0.001000 0.667000 0.215000 0.509000 0.185000 0.305000 0.001000 0.391000 0.234000 0.218000 0.157000 0.316000 0.655000 0.019000 0.010000 0.430000 0.059000 0.247000 0.264000 0.206000 0.420000 0.234000 0.140000 0.286000 0.264000 0.254000 0.196000 Consensus sequence: KTTYMGCWTSAVTGRVCDVV Alignment: BVDGBKCAVTSAWGCRKAAR BVDGBKCAVTSAWGCRKAAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 11-23-2023 08:48:28 Runtime: 12.639387 seconds MOTIFSIM is written by Ngoc Tam L. 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