**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 2 Number of top significant motifs: 1 Number of best matches: 1 Similarity cutoff: >= 0.75 Matching motif database: Jaspar Core Motif tree: No Combined similar motifs: No Output file type: All Output file format: Text Input files and motif counts File name Count of motifs Dataset # U20231123_R_11-23-23_7545_InsertFile1.txt 1 1 U20231123_R_11-23-23_7545_InsertFile2.txt 1 2 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ********************************************************************** Best Matches in Database for Each Motif (Highest to Lowest) ***************************************************************** Dataset #: 1 Motif ID: 1 Motif name: Motif 1 Original motif 0.196000 0.264000 0.254000 0.286000 0.206000 0.234000 0.420000 0.140000 0.264000 0.059000 0.247000 0.430000 0.316000 0.019000 0.655000 0.010000 0.157000 0.234000 0.218000 0.391000 0.001000 0.185000 0.305000 0.509000 0.117000 0.667000 0.001000 0.215000 0.863000 0.001000 0.117000 0.019000 0.234000 0.364000 0.284000 0.118000 0.001000 0.185000 0.001000 0.813000 0.001000 0.557000 0.423000 0.019000 0.811000 0.001000 0.187000 0.001000 0.520000 0.001000 0.166000 0.313000 0.001000 0.175000 0.823000 0.001000 0.001000 0.746000 0.009000 0.244000 0.342000 0.001000 0.609000 0.048000 0.049000 0.068000 0.462000 0.421000 0.657000 0.001000 0.303000 0.039000 0.756000 0.166000 0.010000 0.068000 0.501000 0.137000 0.274000 0.088000 Consensus sequence: BVDGBKCAVTSAWGCRKAAR Reserve complement motif 0.088000 0.137000 0.274000 0.501000 0.068000 0.166000 0.010000 0.756000 0.039000 0.001000 0.303000 0.657000 0.049000 0.462000 0.068000 0.421000 0.342000 0.609000 0.001000 0.048000 0.001000 0.009000 0.746000 0.244000 0.001000 0.823000 0.175000 0.001000 0.313000 0.001000 0.166000 0.520000 0.001000 0.001000 0.187000 0.811000 0.001000 0.423000 0.557000 0.019000 0.813000 0.185000 0.001000 0.001000 0.234000 0.284000 0.364000 0.118000 0.019000 0.001000 0.117000 0.863000 0.117000 0.001000 0.667000 0.215000 0.509000 0.185000 0.305000 0.001000 0.391000 0.234000 0.218000 0.157000 0.316000 0.655000 0.019000 0.010000 0.430000 0.059000 0.247000 0.264000 0.206000 0.420000 0.234000 0.140000 0.286000 0.264000 0.254000 0.196000 Consensus sequence: KTTYMGCWTSAVTGRVCDVV ************************************************************************ Best Matches for Motif ID 1 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0418.1 YAP6 Original Motif Reverse Complement Backward 1 20 0.050983 Taxon: Fungi Original motif 0.174349 0.297595 0.371743 0.156313 0.228686 0.141424 0.588766 0.041123 0.134269 0.092184 0.332665 0.440882 0.114114 0.434434 0.109109 0.342342 0.252252 0.231231 0.072072 0.444444 0.043086 0.114228 0.647295 0.195391 0.492477 0.413240 0.036108 0.058175 0.027054 0.023046 0.056112 0.893788 0.025050 0.021042 0.112224 0.841683 0.890782 0.032064 0.049098 0.028056 0.038076 0.556112 0.103206 0.302605 0.172345 0.048096 0.723447 0.056112 0.067134 0.085170 0.037074 0.810621 0.647648 0.193193 0.064064 0.095095 0.831494 0.062187 0.072217 0.034102 0.162487 0.076229 0.482447 0.278837 0.228228 0.474474 0.142142 0.155155 0.337675 0.085170 0.428858 0.148297 0.430862 0.127255 0.302605 0.139279 0.166333 0.439880 0.243487 0.150301 Consensus sequence: VGKYHGMTTAYGTAAKHRDV Reverse complement motif 0.166333 0.243487 0.439880 0.150301 0.139279 0.127255 0.302605 0.430862 0.337675 0.428858 0.085170 0.148297 0.228228 0.142142 0.474474 0.155155 0.162487 0.482447 0.076229 0.278837 0.034102 0.062187 0.072217 0.831494 0.095095 0.193193 0.064064 0.647648 0.810621 0.085170 0.037074 0.067134 0.172345 0.723447 0.048096 0.056112 0.038076 0.103206 0.556112 0.302605 0.028056 0.032064 0.049098 0.890782 0.841683 0.021042 0.112224 0.025050 0.893788 0.023046 0.056112 0.027054 0.058175 0.413240 0.036108 0.492477 0.043086 0.647295 0.114228 0.195391 0.444444 0.231231 0.072072 0.252252 0.114114 0.109109 0.434434 0.342342 0.440882 0.092184 0.332665 0.134269 0.228686 0.588766 0.141424 0.041123 0.174349 0.371743 0.297595 0.156313 Consensus sequence: VDMDYTTACKTAAYCHKRCV Alignment: VDMDYTTACKTAAYCHKRCV BVDGBKCAVTSAWGCRKAAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 11-23-2023 08:48:28 Runtime: 12.639387 seconds MOTIFSIM is written by Ngoc Tam L. Tran