**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 2 Number of top significant motifs: 1 Number of best matches: 1 Similarity cutoff: >= 0.75 Matching motif database: Jaspar Core Motif tree: No Combined similar motifs: No Output file type: All Output file format: Text Input files and motif counts File name Count of motifs Dataset # U20231123_R_11-23-23_7545_InsertFile1.txt 1 1 U20231123_R_11-23-23_7545_InsertFile2.txt 1 2 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ********************************************************************** Best Matches in Database for Each Motif (Highest to Lowest) ***************************************************************** Dataset #: 1 Motif ID: 1 Motif name: Motif 1 Consensus sequence (original motif): BVDGBKCAVTSAWGCRKAAR Consensus sequence (reverse complement motif): KTTYMGCWTSAVTGRVCDVV ************************************************************************ Best Matches for Motif ID 1 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0418.1 YAP6 Original Motif Reverse Complement Backward 1 20 0.0509832 Taxon: Fungi Consensus sequence (original motif): VGKYHGMTTAYGTAAKHRDV Consensus sequence (reverse complement motif): VDMDYTTACKTAAYCHKRCV Alignment: VDMDYTTACKTAAYCHKRCV BVDGBKCAVTSAWGCRKAAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 2 Motif name: Motif 2 Consensus sequence (original motif): BVDGBKCAVTSAWGCRKAAR Consensus sequence (reverse complement motif): KTTYMGCWTSAVTGRVCDVV ************************************************************************ Best Matches for Motif ID 2 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score MA0418.1 YAP6 Original Motif Reverse Complement Backward 1 20 0.0509832 Taxon: Fungi Consensus sequence (original motif): VGKYHGMTTAYGTAAKHRDV Consensus sequence (reverse complement motif): VDMDYTTACKTAAYCHKRCV Alignment: VDMDYTTACKTAAYCHKRCV BVDGBKCAVTSAWGCRKAAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 11-23-2023 08:48:28 Runtime: 12.6394 seconds MOTIFSIM is written by Ngoc Tam L. Tran