**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 2 Number of top significant motifs: 1 Number of best matches: 1 Similarity cutoff: >= 0.75 Matching motif database: Jaspar Core Motif tree: No Combined similar motifs: No Output file type: All Output file format: Text Input files and motif counts File name Count of motifs Dataset # U20231123_R_11-23-23_7545_InsertFile1.txt 1 1 U20231123_R_11-23-23_7545_InsertFile2.txt 1 2 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ****************************************************************** Top 1 Significant Motifs - Global Matching (Highest to Lowest) ****************************************************************** Dataset #: 1 Motif ID: 1 Motif name: Motif 1 Consensus sequence (original motif): BVDGBKCAVTSAWGCRKAAR Consensus sequence (reverse complement motif): KTTYMGCWTSAVTGRVCDVV *************************************************************** Best Matches for Top Significant Motif ID 1 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 2 Motif 2 Original Motif Original Motif Backward 1 20 0 Consensus sequence (original motif): BVDGBKCAVTSAWGCRKAAR Consensus sequence (reverse complement motif): KTTYMGCWTSAVTGRVCDVV Alignment: BVDGBKCAVTSAWGCRKAAR BVDGBKCAVTSAWGCRKAAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- **************************************************************************************************************************************************************************************************** **************************************************************** Significant Motifs - Global and Local Matching (Highest to Lowest) **************************************************************** Dataset #: 1 Motif ID: 1 Motif name: Motif 1 Consensus sequence (original motif): BVDGBKCAVTSAWGCRKAAR Consensus sequence (reverse complement motif): KTTYMGCWTSAVTGRVCDVV ************************************************************** Best Matches for Significant Motif ID 1 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 2 Motif 2 Original Motif Original Motif Backward 1 20 0 Consensus sequence (original motif): BVDGBKCAVTSAWGCRKAAR Consensus sequence (reverse complement motif): KTTYMGCWTSAVTGRVCDVV Alignment: BVDGBKCAVTSAWGCRKAAR BVDGBKCAVTSAWGCRKAAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- **************************************************************************************************************************************************************************************************** ********************************************************************** Best Matches for Each Motif (Highest to Lowest) ***************************************************************************** Dataset #: 1 Motif ID: 1 Motif name: Motif 1 Consensus sequence (original motif): BVDGBKCAVTSAWGCRKAAR Consensus sequence (reverse complement motif): KTTYMGCWTSAVTGRVCDVV ************************************************************************ Best Matches for Motif ID 1 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 2 Motif 2 Original Motif Original Motif Backward 1 20 0 Consensus sequence (original motif): BVDGBKCAVTSAWGCRKAAR Consensus sequence (reverse complement motif): KTTYMGCWTSAVTGRVCDVV Alignment: BVDGBKCAVTSAWGCRKAAR BVDGBKCAVTSAWGCRKAAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 2 Motif name: Motif 2 Consensus sequence (original motif): BVDGBKCAVTSAWGCRKAAR Consensus sequence (reverse complement motif): KTTYMGCWTSAVTGRVCDVV ************************************************************************ Best Matches for Motif ID 2 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 Motif 1 Original Motif Original Motif Backward 1 20 0 Consensus sequence (original motif): BVDGBKCAVTSAWGCRKAAR Consensus sequence (reverse complement motif): KTTYMGCWTSAVTGRVCDVV Alignment: BVDGBKCAVTSAWGCRKAAR BVDGBKCAVTSAWGCRKAAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 11-23-2023 08:48:28 Runtime: 12.6394 seconds MOTIFSIM is written by Ngoc Tam L. 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