**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 5 Number of top significant motifs: 5 Number of best matches: 5 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Motif tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # DREME_DM230.txt 1 1 MEME_DM230.txt 20 2 PScanChIP_DM230.txt 14 3 RSAT_peak-motifs_DM230.txt 10 4 W-ChIPMotifs_DM230.txt 11 5 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ********************************************************************** Best Matches in Database for Each Motif (Highest to Lowest) ***************************************************************** Dataset #: 1 Motif ID: 1 Motif name: Motif 1 Original motif 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.148148 0.000000 0.851852 0.000000 0.000000 1.000000 0.000000 0.000000 Consensus sequence: GGCGGGGC Reserve complement motif 0.000000 0.000000 1.000000 0.000000 0.148148 0.851852 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 Consensus sequence: GCCCCGCC ************************************************************************ Best Matches for Motif ID 1 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Reverse Complement Original Motif Backward 6 8 0.000000 Species: Mus musculus Original motif 0.204514 0.198353 0.171218 0.425915 0.167188 0.296785 0.246082 0.289946 0.267330 0.148001 0.398674 0.185994 0.549386 0.060167 0.337100 0.053347 0.050746 0.900013 0.022169 0.027073 0.037905 0.920332 0.008360 0.033403 0.410356 0.566702 0.016267 0.006675 0.009526 0.982354 0.001060 0.007060 0.204292 0.001084 0.748567 0.046056 0.003955 0.988490 0.002821 0.004735 0.004264 0.988826 0.004311 0.002598 0.002758 0.929549 0.001244 0.066448 0.260332 0.421683 0.024720 0.293265 0.184798 0.247697 0.085237 0.482268 0.347537 0.197344 0.139961 0.315159 0.255281 0.166620 0.242297 0.335802 Consensus sequence: HBDRCCMCGCCCHHHD Reverse complement motif 0.335802 0.166620 0.242297 0.255281 0.315159 0.197344 0.139961 0.347537 0.482268 0.247697 0.085237 0.184798 0.260332 0.024720 0.421683 0.293265 0.002758 0.001244 0.929549 0.066448 0.004264 0.004311 0.988826 0.002598 0.003955 0.002821 0.988490 0.004735 0.204292 0.748567 0.001084 0.046056 0.009526 0.001060 0.982354 0.007060 0.410356 0.016267 0.566702 0.006675 0.037905 0.008360 0.920332 0.033403 0.050746 0.022169 0.900013 0.027073 0.053347 0.060167 0.337100 0.549386 0.267330 0.398674 0.148001 0.185994 0.167188 0.246082 0.296785 0.289946 0.425915 0.198353 0.171218 0.204514 Consensus sequence: DHHDGGGCGRGGKHBH Alignment: HBDRCCMCGCCCHHHD ---GCCCCGCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Original Motif Reverse Complement Forward 7 8 0.006170 Species: Mus musculus Original motif 0.150668 0.131779 0.245665 0.471887 0.316817 0.287314 0.150829 0.245040 0.256473 0.409066 0.109700 0.224761 0.210646 0.220222 0.345010 0.224122 0.166679 0.508939 0.081676 0.242705 0.049351 0.759380 0.088489 0.102780 0.047598 0.785546 0.121957 0.044898 0.004606 0.944933 0.034696 0.015764 0.040252 0.050652 0.890382 0.018713 0.003038 0.913699 0.022449 0.060814 0.028672 0.941477 0.012276 0.017575 0.635243 0.139731 0.110495 0.114531 0.240016 0.385948 0.182848 0.191188 0.210430 0.274127 0.085171 0.430272 0.088118 0.454598 0.208989 0.248295 0.181269 0.265028 0.149023 0.404680 0.101070 0.252682 0.368542 0.277706 Consensus sequence: DHHBCCCCGCCAHHBHB Reverse complement motif 0.101070 0.368542 0.252682 0.277706 0.404680 0.265028 0.149023 0.181269 0.088118 0.208989 0.454598 0.248295 0.430272 0.274127 0.085171 0.210430 0.240016 0.182848 0.385948 0.191188 0.114531 0.139731 0.110495 0.635243 0.028672 0.012276 0.941477 0.017575 0.003038 0.022449 0.913699 0.060814 0.040252 0.890382 0.050652 0.018713 0.004606 0.034696 0.944933 0.015764 0.047598 0.121957 0.785546 0.044898 0.049351 0.088489 0.759380 0.102780 0.166679 0.081676 0.508939 0.242705 0.210646 0.345010 0.220222 0.224122 0.256473 0.109700 0.409066 0.224761 0.245040 0.287314 0.150829 0.316817 0.471887 0.131779 0.245665 0.150668 Consensus sequence: BHBHDTGGCGGGGBDHD Alignment: BHBHDTGGCGGGGBDHD ------GGCGGGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_secondary Original Motif Original Motif Forward 5 8 0.014600 Species: Mus musculus Original motif 0.146334 0.312326 0.244281 0.297060 0.493155 0.092609 0.162506 0.251729 0.503593 0.059863 0.077561 0.358984 0.763321 0.015264 0.213114 0.008301 0.012415 0.025932 0.945502 0.016151 0.006713 0.015221 0.950098 0.027968 0.062415 0.834303 0.054500 0.048782 0.011010 0.020677 0.928821 0.039493 0.012785 0.024162 0.145822 0.817231 0.133595 0.033962 0.787876 0.044567 0.140697 0.180481 0.428253 0.250570 0.036281 0.806412 0.033510 0.123797 0.157910 0.408607 0.122427 0.311055 0.292185 0.260017 0.197515 0.250283 0.251107 0.124480 0.359447 0.264967 Consensus sequence: BDWAGGCGTGBCHHD Reverse complement motif 0.251107 0.359447 0.124480 0.264967 0.250283 0.260017 0.197515 0.292185 0.157910 0.122427 0.408607 0.311055 0.036281 0.033510 0.806412 0.123797 0.140697 0.428253 0.180481 0.250570 0.133595 0.787876 0.033962 0.044567 0.817231 0.024162 0.145822 0.012785 0.011010 0.928821 0.020677 0.039493 0.062415 0.054500 0.834303 0.048782 0.006713 0.950098 0.015221 0.027968 0.012415 0.945502 0.025932 0.016151 0.008301 0.015264 0.213114 0.763321 0.358984 0.059863 0.077561 0.503593 0.251729 0.092609 0.162506 0.493155 0.146334 0.244281 0.312326 0.297060 Consensus sequence: HHDGBCACGCCTWDB Alignment: BDWAGGCGTGBCHHD ----GGCGGGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Reverse Complement Original Motif Forward 2 8 0.023351 Species: Mus musculus Original motif 0.155386 0.223380 0.374454 0.246780 0.247106 0.159582 0.345111 0.248201 0.238889 0.258354 0.165304 0.337454 0.255612 0.489586 0.051621 0.203182 0.450100 0.545383 0.001071 0.003447 0.003704 0.991007 0.002456 0.002833 0.035504 0.001814 0.928129 0.034553 0.001494 0.991406 0.003414 0.003686 0.003045 0.990628 0.005182 0.001145 0.000990 0.963237 0.001215 0.034557 0.148016 0.838396 0.000666 0.012922 0.014261 0.905847 0.007200 0.072692 0.083394 0.270068 0.058368 0.588170 0.149141 0.286783 0.142802 0.421274 0.204851 0.347195 0.253356 0.194597 0.184442 0.299908 0.194408 0.321242 0.125793 0.380109 0.245318 0.248780 Consensus sequence: BDHHMCGCCCCCTHVBB Reverse complement motif 0.125793 0.245318 0.380109 0.248780 0.321242 0.299908 0.194408 0.184442 0.204851 0.253356 0.347195 0.194597 0.421274 0.286783 0.142802 0.149141 0.588170 0.270068 0.058368 0.083394 0.014261 0.007200 0.905847 0.072692 0.148016 0.000666 0.838396 0.012922 0.000990 0.001215 0.963237 0.034557 0.003045 0.005182 0.990628 0.001145 0.001494 0.003414 0.991406 0.003686 0.035504 0.928129 0.001814 0.034553 0.003704 0.002456 0.991007 0.002833 0.450100 0.001071 0.545383 0.003447 0.255612 0.051621 0.489586 0.203182 0.337454 0.258354 0.165304 0.238889 0.247106 0.345111 0.159582 0.248201 0.155386 0.374454 0.223380 0.246780 Consensus sequence: BVVHAGGGGGCGRDHHB Alignment: BDHHMCGCCCCCTHVBB -GCCCCGCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00024 Glis2_primary Reverse Complement Original Motif Forward 5 8 0.029123 Species: Mus musculus Original motif 0.135895 0.314811 0.129804 0.419490 0.379294 0.148356 0.125349 0.347001 0.331058 0.171563 0.156431 0.340948 0.238325 0.268940 0.259195 0.233540 0.014812 0.072844 0.774496 0.137848 0.826050 0.107559 0.058965 0.007426 0.013657 0.965452 0.008273 0.012618 0.011951 0.975704 0.007210 0.005135 0.015560 0.961676 0.004028 0.018736 0.010295 0.971668 0.003618 0.014418 0.087168 0.805495 0.002118 0.105220 0.098937 0.760880 0.010017 0.130166 0.492579 0.177017 0.171719 0.158685 0.160142 0.327745 0.192170 0.319943 0.484858 0.086830 0.273852 0.154461 0.266100 0.086868 0.363661 0.283371 Consensus sequence: HHHVGACCCCCCVBRD Reverse complement motif 0.266100 0.363661 0.086868 0.283371 0.154461 0.086830 0.273852 0.484858 0.160142 0.192170 0.327745 0.319943 0.158685 0.177017 0.171719 0.492579 0.098937 0.010017 0.760880 0.130166 0.087168 0.002118 0.805495 0.105220 0.010295 0.003618 0.971668 0.014418 0.015560 0.004028 0.961676 0.018736 0.011951 0.007210 0.975704 0.005135 0.013657 0.008273 0.965452 0.012618 0.007426 0.107559 0.058965 0.826050 0.014812 0.774496 0.072844 0.137848 0.238325 0.259195 0.268940 0.233540 0.340948 0.171563 0.156431 0.331058 0.347001 0.148356 0.125349 0.379294 0.419490 0.314811 0.129804 0.135895 Consensus sequence: HKBBGGGGGGTCVHHH Alignment: HHHVGACCCCCCVBRD ----GCCCCGCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 2 Motif name: Motif 2 Original motif 0.628571 0.000000 0.323810 0.047619 0.295238 0.000000 0.704762 0.000000 0.495238 0.009524 0.419048 0.076190 0.885715 0.028571 0.076190 0.009524 0.171429 0.095238 0.685714 0.047619 0.666667 0.038095 0.295238 0.000000 0.390476 0.009524 0.580952 0.019048 0.361905 0.000000 0.619047 0.019048 0.238095 0.228571 0.504763 0.028571 0.504762 0.228571 0.142857 0.123810 0.333333 0.076190 0.590477 0.000000 0.428571 0.000000 0.571429 0.000000 0.676190 0.057143 0.123810 0.142857 0.457143 0.009524 0.533333 0.000000 Consensus sequence: RGRAGARRGARRAR Reserve complement motif 0.457143 0.533333 0.009524 0.000000 0.142857 0.057143 0.123810 0.676190 0.428571 0.571429 0.000000 0.000000 0.333333 0.590477 0.076190 0.000000 0.123810 0.228571 0.142857 0.504762 0.238095 0.504763 0.228571 0.028571 0.361905 0.619047 0.000000 0.019048 0.390476 0.580952 0.009524 0.019048 0.000000 0.038095 0.295238 0.666667 0.171429 0.685714 0.095238 0.047619 0.009524 0.028571 0.076190 0.885715 0.076190 0.009524 0.419048 0.495238 0.295238 0.704762 0.000000 0.000000 0.047619 0.000000 0.323810 0.628571 Consensus sequence: MTMMTCMMTCTKCK ************************************************************************ Best Matches for Motif ID 2 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00013 Gabpa_secondary Original Motif Reverse Complement Backward 3 14 0.037862 Species: Mus musculus Original motif 0.233133 0.551828 0.139009 0.076030 0.100085 0.525562 0.101688 0.272665 0.252996 0.198121 0.299171 0.249711 0.141471 0.195290 0.234560 0.428679 0.160993 0.442765 0.082653 0.313590 0.307890 0.127950 0.071713 0.492448 0.093453 0.148935 0.080288 0.677324 0.083535 0.634212 0.074652 0.207601 0.098119 0.639328 0.099957 0.162596 0.067430 0.451776 0.357188 0.123606 0.286259 0.466975 0.063013 0.183753 0.203211 0.422637 0.133368 0.240783 0.111206 0.315595 0.192833 0.380366 0.199462 0.324652 0.305491 0.170395 0.347919 0.292387 0.230724 0.128970 0.254648 0.294196 0.194942 0.256214 Consensus sequence: CYDBYWTCCSMHBVVH Reverse complement motif 0.254648 0.194942 0.294196 0.256214 0.128970 0.292387 0.230724 0.347919 0.199462 0.305491 0.324652 0.170395 0.380366 0.315595 0.192833 0.111206 0.203211 0.133368 0.422637 0.240783 0.286259 0.063013 0.466975 0.183753 0.067430 0.357188 0.451776 0.123606 0.098119 0.099957 0.639328 0.162596 0.083535 0.074652 0.634212 0.207601 0.677324 0.148935 0.080288 0.093453 0.492448 0.127950 0.071713 0.307890 0.160993 0.082653 0.442765 0.313590 0.428679 0.195290 0.234560 0.141471 0.252996 0.299171 0.198121 0.249711 0.100085 0.101688 0.525562 0.272665 0.233133 0.139009 0.551828 0.076030 Consensus sequence: DBVVDRSGGAWKVHKG Alignment: DBVVDRSGGAWKVHKG RGRAGARRGARRAR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00101 Sox12_secondary Original Motif Original Motif Forward 2 14 0.038148 Species: Mus musculus Original motif 0.378898 0.318901 0.205859 0.096341 0.352524 0.321236 0.224504 0.101736 0.323551 0.182056 0.210897 0.283496 0.135539 0.325230 0.208031 0.331200 0.663106 0.055471 0.154459 0.126963 0.051748 0.292567 0.537307 0.118378 0.886489 0.042361 0.035742 0.035408 0.043647 0.688744 0.094358 0.173252 0.882052 0.039818 0.018899 0.059231 0.864171 0.036011 0.068363 0.031455 0.790158 0.046868 0.041594 0.121379 0.087447 0.143905 0.707798 0.060849 0.295919 0.132479 0.485703 0.085899 0.653156 0.133004 0.110012 0.103828 0.351764 0.131771 0.217730 0.298736 0.203977 0.196773 0.099958 0.499292 Consensus sequence: VVDBASACAAAGRADH Reverse complement motif 0.499292 0.196773 0.099958 0.203977 0.298736 0.131771 0.217730 0.351764 0.103828 0.133004 0.110012 0.653156 0.295919 0.485703 0.132479 0.085899 0.087447 0.707798 0.143905 0.060849 0.121379 0.046868 0.041594 0.790158 0.031455 0.036011 0.068363 0.864171 0.059231 0.039818 0.018899 0.882052 0.043647 0.094358 0.688744 0.173252 0.035408 0.042361 0.035742 0.886489 0.051748 0.537307 0.292567 0.118378 0.126963 0.055471 0.154459 0.663106 0.331200 0.325230 0.208031 0.135539 0.283496 0.182056 0.210897 0.323551 0.101736 0.321236 0.224504 0.352524 0.096341 0.318901 0.205859 0.378898 Consensus sequence: HDTMCTTTGTSTVDBB Alignment: VVDBASACAAAGRADH -RGRAGARRGARRAR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00058 Tcf3_secondary Original Motif Original Motif Backward 2 14 0.039618 Species: Mus musculus Original motif 0.337361 0.181848 0.282900 0.197891 0.192382 0.237864 0.390655 0.179099 0.134397 0.374785 0.355693 0.135126 0.113675 0.477609 0.347988 0.060728 0.187411 0.212669 0.392109 0.207811 0.497832 0.111474 0.194855 0.195838 0.526043 0.126712 0.214265 0.132981 0.433876 0.180023 0.104860 0.281242 0.539525 0.140192 0.113374 0.206909 0.397301 0.176842 0.115802 0.310056 0.529441 0.199807 0.148595 0.122158 0.485035 0.166231 0.150350 0.198384 0.532479 0.165910 0.177757 0.123854 0.351189 0.173665 0.138509 0.336637 0.260688 0.223764 0.189060 0.326488 Consensus sequence: DVBSBDAHAHAHAHH Reverse complement motif 0.326488 0.223764 0.189060 0.260688 0.336637 0.173665 0.138509 0.351189 0.123854 0.165910 0.177757 0.532479 0.198384 0.166231 0.150350 0.485035 0.122158 0.199807 0.148595 0.529441 0.310056 0.176842 0.115802 0.397301 0.206909 0.140192 0.113374 0.539525 0.281242 0.180023 0.104860 0.433876 0.132981 0.126712 0.214265 0.526043 0.195838 0.111474 0.194855 0.497832 0.187411 0.392109 0.212669 0.207811 0.113675 0.347988 0.477609 0.060728 0.134397 0.355693 0.374785 0.135126 0.192382 0.390655 0.237864 0.179099 0.197891 0.181848 0.282900 0.337361 Consensus sequence: HHTHTHTHTDBSBVD Alignment: DVBSBDAHAHAHAHH RGRAGARRGARRAR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Reverse Complement Original Motif Backward 9 14 0.040738 Species: Mus musculus Original motif 0.399785 0.446658 0.111435 0.042122 0.535175 0.103991 0.089706 0.271128 0.078171 0.387987 0.375083 0.158759 0.309001 0.519142 0.070618 0.101239 0.201844 0.255818 0.323149 0.219190 0.534101 0.109845 0.235026 0.121028 0.656038 0.037473 0.261484 0.045006 0.315713 0.164290 0.471815 0.048182 0.651960 0.009412 0.328237 0.010391 0.937365 0.017313 0.007516 0.037807 0.019983 0.044238 0.012387 0.923392 0.061195 0.021485 0.881645 0.035675 0.017521 0.952998 0.013139 0.016342 0.254160 0.029735 0.493023 0.223082 0.239200 0.593324 0.114503 0.052973 0.610822 0.071539 0.099169 0.218470 0.166610 0.389712 0.204400 0.239278 0.227752 0.361626 0.178497 0.232125 0.537030 0.182466 0.026035 0.254470 0.235902 0.151006 0.043788 0.569304 0.081851 0.250397 0.590059 0.077693 0.340417 0.189613 0.272075 0.197895 Consensus sequence: MWSMBAARRATGCDCABHATGD Reverse complement motif 0.197895 0.189613 0.272075 0.340417 0.081851 0.590059 0.250397 0.077693 0.569304 0.151006 0.043788 0.235902 0.254470 0.182466 0.026035 0.537030 0.227752 0.178497 0.361626 0.232125 0.166610 0.204400 0.389712 0.239278 0.218470 0.071539 0.099169 0.610822 0.239200 0.114503 0.593324 0.052973 0.254160 0.493023 0.029735 0.223082 0.017521 0.013139 0.952998 0.016342 0.061195 0.881645 0.021485 0.035675 0.923392 0.044238 0.012387 0.019983 0.037807 0.017313 0.007516 0.937365 0.010391 0.009412 0.328237 0.651960 0.315713 0.471815 0.164290 0.048182 0.045006 0.037473 0.261484 0.656038 0.121028 0.109845 0.235026 0.534101 0.201844 0.323149 0.255818 0.219190 0.309001 0.070618 0.519142 0.101239 0.078171 0.375083 0.387987 0.158759 0.271128 0.103991 0.089706 0.535175 0.399785 0.111435 0.446658 0.042122 Consensus sequence: DCATDBTGHGCATKMTTBRSWR Alignment: MWSMBAARRATGCDCABHATGD MTMMTCMMTCTKCK-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Original Motif Reverse Complement Backward 3 14 0.040940 Species: Mus musculus Original motif 0.155386 0.223380 0.374454 0.246780 0.247106 0.159582 0.345111 0.248201 0.238889 0.258354 0.165304 0.337454 0.255612 0.489586 0.051621 0.203182 0.450100 0.545383 0.001071 0.003447 0.003704 0.991007 0.002456 0.002833 0.035504 0.001814 0.928129 0.034553 0.001494 0.991406 0.003414 0.003686 0.003045 0.990628 0.005182 0.001145 0.000990 0.963237 0.001215 0.034557 0.148016 0.838396 0.000666 0.012922 0.014261 0.905847 0.007200 0.072692 0.083394 0.270068 0.058368 0.588170 0.149141 0.286783 0.142802 0.421274 0.204851 0.347195 0.253356 0.194597 0.184442 0.299908 0.194408 0.321242 0.125793 0.380109 0.245318 0.248780 Consensus sequence: BDHHMCGCCCCCTHVBB Reverse complement motif 0.125793 0.245318 0.380109 0.248780 0.321242 0.299908 0.194408 0.184442 0.204851 0.253356 0.347195 0.194597 0.421274 0.286783 0.142802 0.149141 0.588170 0.270068 0.058368 0.083394 0.014261 0.007200 0.905847 0.072692 0.148016 0.000666 0.838396 0.012922 0.000990 0.001215 0.963237 0.034557 0.003045 0.005182 0.990628 0.001145 0.001494 0.003414 0.991406 0.003686 0.035504 0.928129 0.001814 0.034553 0.003704 0.002456 0.991007 0.002833 0.450100 0.001071 0.545383 0.003447 0.255612 0.051621 0.489586 0.203182 0.337454 0.258354 0.165304 0.238889 0.247106 0.345111 0.159582 0.248201 0.155386 0.374454 0.223380 0.246780 Consensus sequence: BVVHAGGGGGCGRDHHB Alignment: BVVHAGGGGGCGRDHHB -RGRAGARRGARRAR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 3 Motif name: Motif 3 Original motif 0.884615 0.076923 0.000000 0.038462 0.307692 0.153846 0.000000 0.538462 0.846154 0.000000 0.000000 0.153846 0.615385 0.000000 0.153846 0.230769 0.923077 0.076923 0.000000 0.000000 0.500000 0.038462 0.076923 0.384615 0.230769 0.153846 0.000000 0.615385 0.653846 0.000000 0.000000 0.346154 0.884615 0.115385 0.000000 0.000000 0.846154 0.000000 0.000000 0.153846 0.846153 0.115385 0.000000 0.038462 0.230769 0.346154 0.423077 0.000000 0.384615 0.000000 0.153846 0.461538 0.730769 0.000000 0.000000 0.269231 Consensus sequence: AWAAAWTWAAASWA Reserve complement motif 0.269231 0.000000 0.000000 0.730769 0.461538 0.000000 0.153846 0.384615 0.230769 0.423077 0.346154 0.000000 0.038462 0.115385 0.000000 0.846153 0.153846 0.000000 0.000000 0.846154 0.000000 0.115385 0.000000 0.884615 0.346154 0.000000 0.000000 0.653846 0.615385 0.153846 0.000000 0.230769 0.384615 0.038462 0.076923 0.500000 0.000000 0.076923 0.000000 0.923077 0.230769 0.000000 0.153846 0.615385 0.153846 0.000000 0.000000 0.846154 0.538462 0.153846 0.000000 0.307692 0.038462 0.076923 0.000000 0.884615 Consensus sequence: TWSTTTWAWTTTWT ************************************************************************ Best Matches for Motif ID 3 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00121 Hoxd10 Reverse Complement Reverse Complement Backward 2 14 0.023209 Species: Mus musculus Original motif 0.405345 0.293266 0.220907 0.080482 0.398063 0.099034 0.333525 0.169378 0.049753 0.190411 0.336789 0.423048 0.243698 0.226261 0.324346 0.205696 0.030873 0.549741 0.008321 0.411065 0.714225 0.228092 0.020960 0.036723 0.833992 0.010944 0.021918 0.133146 0.008898 0.026169 0.008341 0.956591 0.811684 0.004889 0.004751 0.178676 0.952107 0.004322 0.004587 0.038984 0.925365 0.008360 0.006811 0.059464 0.850659 0.058250 0.065237 0.025855 0.193369 0.242985 0.049515 0.514131 0.266774 0.080601 0.239781 0.412844 0.335522 0.125500 0.188170 0.350809 0.407171 0.120540 0.187300 0.284989 0.281181 0.242348 0.160247 0.316224 Consensus sequence: VDKVYAATAAAATDDDH Reverse complement motif 0.316224 0.242348 0.160247 0.281181 0.284989 0.120540 0.187300 0.407171 0.350809 0.125500 0.188170 0.335522 0.412844 0.080601 0.239781 0.266774 0.514131 0.242985 0.049515 0.193369 0.025855 0.058250 0.065237 0.850659 0.059464 0.008360 0.006811 0.925365 0.038984 0.004322 0.004587 0.952107 0.178676 0.004889 0.004751 0.811684 0.956591 0.026169 0.008341 0.008898 0.133146 0.010944 0.021918 0.833992 0.036723 0.228092 0.020960 0.714225 0.030873 0.008321 0.549741 0.411065 0.243698 0.324346 0.226261 0.205696 0.423048 0.190411 0.336789 0.049753 0.169378 0.099034 0.333525 0.398063 0.080482 0.293266 0.220907 0.405345 Consensus sequence: HDDDATTTTATTKVRDB Alignment: HDDDATTTTATTKVRDB --TWSTTTWAWTTTWT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_secondary Original Motif Original Motif Forward 3 14 0.024404 Species: Mus musculus Original motif 0.162968 0.284828 0.440984 0.111220 0.151392 0.200635 0.205316 0.442657 0.267215 0.083669 0.192498 0.456618 0.332771 0.180711 0.200027 0.286491 0.509370 0.102954 0.242569 0.145107 0.666262 0.077309 0.154466 0.101962 0.737968 0.113335 0.100401 0.048296 0.658878 0.141580 0.134033 0.065510 0.766115 0.094051 0.069763 0.070072 0.755621 0.088491 0.044802 0.111086 0.749083 0.135917 0.047510 0.067490 0.663231 0.176795 0.028134 0.131839 0.553358 0.277659 0.038655 0.130328 0.392578 0.314083 0.209844 0.083495 0.198462 0.237132 0.239466 0.324940 0.275121 0.210087 0.194779 0.320013 0.287748 0.277395 0.142704 0.292154 Consensus sequence: VBDDAAAAAAAAMVBHH Reverse complement motif 0.292154 0.277395 0.142704 0.287748 0.320013 0.210087 0.194779 0.275121 0.324940 0.237132 0.239466 0.198462 0.083495 0.314083 0.209844 0.392578 0.130328 0.277659 0.038655 0.553358 0.131839 0.176795 0.028134 0.663231 0.067490 0.135917 0.047510 0.749083 0.111086 0.088491 0.044802 0.755621 0.070072 0.094051 0.069763 0.766115 0.065510 0.141580 0.134033 0.658878 0.048296 0.113335 0.100401 0.737968 0.101962 0.077309 0.154466 0.666262 0.145107 0.102954 0.242569 0.509370 0.286491 0.180711 0.200027 0.332771 0.456618 0.083669 0.192498 0.267215 0.442657 0.200635 0.205316 0.151392 0.162968 0.440984 0.284828 0.111220 Consensus sequence: HHVBYTTTTTTTTDDVV Alignment: VBDDAAAAAAAAMVBHH --AWAAAWTWAAASWA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00255 Dbx1 Original Motif Original Motif Forward 3 14 0.027380 Species: Mus musculus Original motif 0.193358 0.228955 0.160692 0.416995 0.611960 0.068099 0.048494 0.271446 0.459770 0.057385 0.307824 0.175021 0.226103 0.127408 0.101076 0.545413 0.241226 0.228640 0.067165 0.462969 0.621421 0.137382 0.078412 0.162785 0.737972 0.031899 0.051833 0.178295 0.110802 0.098497 0.073668 0.717033 0.129567 0.110629 0.036048 0.723756 0.729342 0.031636 0.088480 0.150541 0.540257 0.104927 0.048065 0.306750 0.195987 0.148698 0.098709 0.556606 0.587529 0.072583 0.170635 0.169252 0.497416 0.161804 0.219409 0.121371 0.278831 0.114362 0.139037 0.467771 0.297462 0.189119 0.187754 0.325665 0.397268 0.140582 0.287428 0.174722 Consensus sequence: HARTHAATTAWTAVDHD Reverse complement motif 0.174722 0.140582 0.287428 0.397268 0.325665 0.189119 0.187754 0.297462 0.467771 0.114362 0.139037 0.278831 0.121371 0.161804 0.219409 0.497416 0.169252 0.072583 0.170635 0.587529 0.556606 0.148698 0.098709 0.195987 0.306750 0.104927 0.048065 0.540257 0.150541 0.031636 0.088480 0.729342 0.723756 0.110629 0.036048 0.129567 0.717033 0.098497 0.073668 0.110802 0.178295 0.031899 0.051833 0.737972 0.162785 0.137382 0.078412 0.621421 0.462969 0.228640 0.067165 0.241226 0.545413 0.127408 0.101076 0.226103 0.175021 0.057385 0.307824 0.459770 0.271446 0.068099 0.048494 0.611960 0.416995 0.228955 0.160692 0.193358 Consensus sequence: DHDBTAWTAATTHAKTH Alignment: HARTHAATTAWTAVDHD --AWAAAWTWAAASWA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00090 Elf3_secondary Original Motif Original Motif Backward 2 14 0.029357 Species: Mus musculus Original motif 0.155083 0.152982 0.490906 0.201030 0.123195 0.312681 0.220770 0.343354 0.110252 0.131358 0.153983 0.604406 0.216489 0.490160 0.101348 0.192003 0.396130 0.292429 0.103252 0.208189 0.634770 0.070898 0.070668 0.223664 0.667102 0.099915 0.067576 0.165407 0.625495 0.095579 0.039353 0.239573 0.717478 0.093228 0.024737 0.164558 0.729965 0.048628 0.024557 0.196850 0.670909 0.118718 0.043692 0.166681 0.689441 0.050145 0.038829 0.221584 0.506735 0.159498 0.095635 0.238132 0.406093 0.298915 0.149902 0.145090 0.193913 0.282078 0.096706 0.427303 0.272324 0.154790 0.262469 0.310417 0.224484 0.458724 0.060144 0.256647 Consensus sequence: DBTHHAAAAAAAAVHDH Reverse complement motif 0.224484 0.060144 0.458724 0.256647 0.310417 0.154790 0.262469 0.272324 0.427303 0.282078 0.096706 0.193913 0.145090 0.298915 0.149902 0.406093 0.238132 0.159498 0.095635 0.506735 0.221584 0.050145 0.038829 0.689441 0.166681 0.118718 0.043692 0.670909 0.196850 0.048628 0.024557 0.729965 0.164558 0.093228 0.024737 0.717478 0.239573 0.095579 0.039353 0.625495 0.165407 0.099915 0.067576 0.667102 0.223664 0.070898 0.070668 0.634770 0.208189 0.292429 0.103252 0.396130 0.216489 0.101348 0.490160 0.192003 0.604406 0.131358 0.153983 0.110252 0.343354 0.312681 0.220770 0.123195 0.155083 0.490906 0.152982 0.201030 Consensus sequence: DDHBTTTTTTTTHDAVH Alignment: DBTHHAAAAAAAAVHDH --AWAAAWTWAAASWA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00037 Zfp105_primary Original Motif Original Motif Backward 2 14 0.031680 Species: Mus musculus Original motif 0.363104 0.182807 0.145232 0.308856 0.419707 0.133742 0.222546 0.224005 0.164481 0.418263 0.052397 0.364858 0.715575 0.117639 0.064914 0.101872 0.883836 0.026985 0.032584 0.056596 0.558797 0.151280 0.033120 0.256803 0.267037 0.403488 0.026746 0.302729 0.939762 0.013627 0.034579 0.012032 0.897072 0.009878 0.035642 0.057408 0.305904 0.516040 0.055311 0.122746 0.880940 0.027958 0.048350 0.042752 0.710082 0.052464 0.040250 0.197204 0.246712 0.125155 0.318627 0.309506 0.429749 0.181755 0.176892 0.211603 0.339643 0.097216 0.355250 0.207891 Consensus sequence: HDYAAAHAAMAADHD Reverse complement motif 0.339643 0.355250 0.097216 0.207891 0.211603 0.181755 0.176892 0.429749 0.246712 0.318627 0.125155 0.309506 0.197204 0.052464 0.040250 0.710082 0.042752 0.027958 0.048350 0.880940 0.305904 0.055311 0.516040 0.122746 0.057408 0.009878 0.035642 0.897072 0.012032 0.013627 0.034579 0.939762 0.267037 0.026746 0.403488 0.302729 0.256803 0.151280 0.033120 0.558797 0.056596 0.026985 0.032584 0.883836 0.101872 0.117639 0.064914 0.715575 0.164481 0.052397 0.418263 0.364858 0.224005 0.133742 0.222546 0.419707 0.308856 0.182807 0.145232 0.363104 Consensus sequence: HHHTTRTTDTTTKDH Alignment: HDYAAAHAAMAADHD AWAAAWTWAAASWA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 4 Motif name: Motif 4 Original motif 1.000000 0.000000 0.000000 0.000000 0.947368 0.000000 0.052632 0.000000 1.000000 0.000000 0.000000 0.000000 0.789474 0.210526 0.000000 0.000000 0.473684 0.052632 0.000000 0.473684 0.210526 0.000000 0.000000 0.789474 0.052632 0.000000 0.000000 0.947368 0.631579 0.000000 0.368421 0.000000 0.052632 0.736842 0.000000 0.210526 0.421053 0.210526 0.000000 0.368421 0.263158 0.000000 0.000000 0.736842 Consensus sequence: AAAAWTTRCWT Reserve complement motif 0.736842 0.000000 0.000000 0.263158 0.368421 0.210526 0.000000 0.421053 0.052632 0.000000 0.736842 0.210526 0.000000 0.000000 0.368421 0.631579 0.947368 0.000000 0.000000 0.052632 0.789474 0.000000 0.000000 0.210526 0.473684 0.052632 0.000000 0.473684 0.000000 0.210526 0.000000 0.789474 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.052632 0.947368 0.000000 0.000000 0.000000 1.000000 Consensus sequence: AWGKAAWTTTT ************************************************************************ Best Matches for Motif ID 4 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00044 Mafk_secondary Original Motif Original Motif Backward 3 11 0.022187 Species: Mus musculus Original motif 0.289934 0.244974 0.342021 0.123071 0.317105 0.250774 0.206169 0.225952 0.589909 0.146264 0.176464 0.087364 0.805648 0.031025 0.116712 0.046614 0.859239 0.012630 0.068740 0.059391 0.877855 0.017270 0.013520 0.091354 0.822443 0.051458 0.029433 0.096666 0.175032 0.076822 0.256419 0.491726 0.028231 0.131221 0.031440 0.809107 0.050608 0.039418 0.847824 0.062150 0.041983 0.868232 0.042708 0.047077 0.757931 0.111841 0.090214 0.040013 0.451956 0.283644 0.033652 0.230747 0.058765 0.285975 0.414514 0.240747 0.391919 0.133805 0.407813 0.066464 Consensus sequence: VHAAAAADTGCAHBR Reverse complement motif 0.391919 0.407813 0.133805 0.066464 0.058765 0.414514 0.285975 0.240747 0.230747 0.283644 0.033652 0.451956 0.040013 0.111841 0.090214 0.757931 0.041983 0.042708 0.868232 0.047077 0.050608 0.847824 0.039418 0.062150 0.809107 0.131221 0.031440 0.028231 0.491726 0.076822 0.256419 0.175032 0.096666 0.051458 0.029433 0.822443 0.091354 0.017270 0.013520 0.877855 0.059391 0.012630 0.068740 0.859239 0.046614 0.031025 0.116712 0.805648 0.087364 0.146264 0.176464 0.589909 0.225952 0.250774 0.206169 0.317105 0.289934 0.342021 0.244974 0.123071 Consensus sequence: MBHTGCADTTTTTHV Alignment: VHAAAAADTGCAHBR --AAAAWTTRCWT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00075 Sox15_primary Reverse Complement Reverse Complement Forward 1 11 0.031888 Species: Mus musculus Original motif 0.287334 0.139055 0.124297 0.449314 0.278683 0.214056 0.278266 0.228994 0.196938 0.172103 0.339663 0.291296 0.343773 0.089222 0.198442 0.368564 0.217683 0.069371 0.485495 0.227451 0.795638 0.049144 0.086842 0.068377 0.932914 0.008887 0.006817 0.051381 0.018504 0.893128 0.012624 0.075744 0.960471 0.008180 0.009943 0.021405 0.966816 0.008885 0.008787 0.015512 0.086103 0.016953 0.005969 0.890975 0.475989 0.013028 0.097844 0.413139 0.304890 0.097952 0.464158 0.133000 0.458453 0.118585 0.307695 0.115267 0.205225 0.241082 0.224896 0.328798 0.328081 0.178970 0.116466 0.376483 0.188001 0.185031 0.192398 0.434571 Consensus sequence: HDDDDAACAATWRRBHD Reverse complement motif 0.434571 0.185031 0.192398 0.188001 0.376483 0.178970 0.116466 0.328081 0.328798 0.241082 0.224896 0.205225 0.115267 0.118585 0.307695 0.458453 0.304890 0.464158 0.097952 0.133000 0.413139 0.013028 0.097844 0.475989 0.890975 0.016953 0.005969 0.086103 0.015512 0.008885 0.008787 0.966816 0.021405 0.008180 0.009943 0.960471 0.018504 0.012624 0.893128 0.075744 0.051381 0.008887 0.006817 0.932914 0.068377 0.049144 0.086842 0.795638 0.217683 0.485495 0.069371 0.227451 0.368564 0.089222 0.198442 0.343773 0.196938 0.339663 0.172103 0.291296 0.228994 0.214056 0.278266 0.278683 0.449314 0.139055 0.124297 0.287334 Consensus sequence: DHVKMWATTGTTHDHDH Alignment: DHVKMWATTGTTHDHDH AWGKAAWTTTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00091 Sox5_primary Reverse Complement Reverse Complement Backward 6 11 0.033390 Species: Mus musculus Original motif 0.305368 0.133033 0.173233 0.388366 0.257879 0.197076 0.146872 0.398174 0.257635 0.122462 0.256979 0.362924 0.446808 0.093619 0.289963 0.169610 0.148292 0.091229 0.632311 0.128169 0.827592 0.026174 0.130622 0.015612 0.976345 0.003817 0.005452 0.014386 0.005230 0.937364 0.008904 0.048502 0.973417 0.003014 0.006136 0.017433 0.974095 0.004350 0.011425 0.010130 0.030624 0.011927 0.003795 0.953653 0.491667 0.015453 0.085481 0.407399 0.451773 0.100304 0.244084 0.203838 0.434242 0.114442 0.217049 0.234267 0.333464 0.254828 0.092729 0.318979 0.333644 0.114919 0.184420 0.367017 Consensus sequence: DHDDGAACAATWDDHD Reverse complement motif 0.367017 0.114919 0.184420 0.333644 0.318979 0.254828 0.092729 0.333464 0.234267 0.114442 0.217049 0.434242 0.203838 0.100304 0.244084 0.451773 0.407399 0.015453 0.085481 0.491667 0.953653 0.011927 0.003795 0.030624 0.010130 0.004350 0.011425 0.974095 0.017433 0.003014 0.006136 0.973417 0.005230 0.008904 0.937364 0.048502 0.014386 0.003817 0.005452 0.976345 0.015612 0.026174 0.130622 0.827592 0.148292 0.632311 0.091229 0.128169 0.169610 0.093619 0.289963 0.446808 0.362924 0.122462 0.256979 0.257635 0.398174 0.197076 0.146872 0.257879 0.388366 0.133033 0.173233 0.305368 Consensus sequence: DHDDWATTGTTCDDHD Alignment: DHDDWATTGTTCDDHD AWGKAAWTTTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00014 Sox17_primary Reverse Complement Reverse Complement Backward 4 11 0.035239 Species: Mus musculus Original motif 0.384811 0.284700 0.175936 0.154553 0.309402 0.148547 0.182807 0.359244 0.481080 0.063522 0.236227 0.219171 0.767683 0.076339 0.078689 0.077290 0.721907 0.020423 0.021208 0.236461 0.015843 0.855728 0.037803 0.090627 0.946041 0.014076 0.006202 0.033681 0.968744 0.003602 0.010784 0.016871 0.019919 0.012714 0.005072 0.962296 0.184775 0.020594 0.079338 0.715293 0.391691 0.169606 0.345342 0.093361 0.686419 0.086126 0.077592 0.149862 0.416935 0.101839 0.062848 0.418379 0.272943 0.305787 0.124571 0.296700 0.388624 0.124150 0.177104 0.310122 Consensus sequence: VDDAACAATTVAWHD Reverse complement motif 0.310122 0.124150 0.177104 0.388624 0.272943 0.124571 0.305787 0.296700 0.418379 0.101839 0.062848 0.416935 0.149862 0.086126 0.077592 0.686419 0.093361 0.169606 0.345342 0.391691 0.715293 0.020594 0.079338 0.184775 0.962296 0.012714 0.005072 0.019919 0.016871 0.003602 0.010784 0.968744 0.033681 0.014076 0.006202 0.946041 0.015843 0.037803 0.855728 0.090627 0.236461 0.020423 0.021208 0.721907 0.077290 0.076339 0.078689 0.767683 0.219171 0.063522 0.236227 0.481080 0.359244 0.148547 0.182807 0.309402 0.154553 0.284700 0.175936 0.384811 Consensus sequence: DDWTBAATTGTTDDB Alignment: DDWTBAATTGTTDDB -AWGKAAWTTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00069 Sox1_secondary Reverse Complement Original Motif Forward 1 11 0.035705 Species: Mus musculus Original motif 0.311195 0.320761 0.168207 0.199837 0.167435 0.254705 0.172347 0.405512 0.455008 0.141912 0.238795 0.164285 0.073716 0.141297 0.053296 0.731691 0.568590 0.149220 0.096523 0.185666 0.713176 0.043537 0.154070 0.089217 0.052174 0.056918 0.031611 0.859297 0.054048 0.062932 0.047885 0.835134 0.062609 0.086497 0.830338 0.020556 0.019412 0.026926 0.041178 0.912484 0.025514 0.121633 0.159655 0.693198 0.589206 0.202387 0.156463 0.051943 0.139529 0.144613 0.355594 0.360265 0.099136 0.393670 0.195997 0.311196 0.221257 0.260915 0.363263 0.154565 Consensus sequence: HBDTAATTGTTABBV Reverse complement motif 0.221257 0.363263 0.260915 0.154565 0.099136 0.195997 0.393670 0.311196 0.360265 0.144613 0.355594 0.139529 0.051943 0.202387 0.156463 0.589206 0.693198 0.121633 0.159655 0.025514 0.912484 0.026926 0.041178 0.019412 0.062609 0.830338 0.086497 0.020556 0.835134 0.062932 0.047885 0.054048 0.859297 0.056918 0.031611 0.052174 0.089217 0.043537 0.154070 0.713176 0.185666 0.149220 0.096523 0.568590 0.731691 0.141297 0.053296 0.073716 0.164285 0.141912 0.238795 0.455008 0.405512 0.254705 0.172347 0.167435 0.311195 0.168207 0.320761 0.199837 Consensus sequence: VBVTAACAATTADVD Alignment: HBDTAATTGTTABBV AWGKAAWTTTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 5 Motif name: Motif 5 Original motif 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: AWTAAATAYAATTT Reserve complement motif 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: AAATTKTATTTAWT ************************************************************************ Best Matches for Motif ID 5 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00121 Hoxd10 Reverse Complement Reverse Complement Backward 2 14 0.025873 Species: Mus musculus Original motif 0.405345 0.293266 0.220907 0.080482 0.398063 0.099034 0.333525 0.169378 0.049753 0.190411 0.336789 0.423048 0.243698 0.226261 0.324346 0.205696 0.030873 0.549741 0.008321 0.411065 0.714225 0.228092 0.020960 0.036723 0.833992 0.010944 0.021918 0.133146 0.008898 0.026169 0.008341 0.956591 0.811684 0.004889 0.004751 0.178676 0.952107 0.004322 0.004587 0.038984 0.925365 0.008360 0.006811 0.059464 0.850659 0.058250 0.065237 0.025855 0.193369 0.242985 0.049515 0.514131 0.266774 0.080601 0.239781 0.412844 0.335522 0.125500 0.188170 0.350809 0.407171 0.120540 0.187300 0.284989 0.281181 0.242348 0.160247 0.316224 Consensus sequence: VDKVYAATAAAATDDDH Reverse complement motif 0.316224 0.242348 0.160247 0.281181 0.284989 0.120540 0.187300 0.407171 0.350809 0.125500 0.188170 0.335522 0.412844 0.080601 0.239781 0.266774 0.514131 0.242985 0.049515 0.193369 0.025855 0.058250 0.065237 0.850659 0.059464 0.008360 0.006811 0.925365 0.038984 0.004322 0.004587 0.952107 0.178676 0.004889 0.004751 0.811684 0.956591 0.026169 0.008341 0.008898 0.133146 0.010944 0.021918 0.833992 0.036723 0.228092 0.020960 0.714225 0.030873 0.008321 0.549741 0.411065 0.243698 0.324346 0.226261 0.205696 0.423048 0.190411 0.336789 0.049753 0.169378 0.099034 0.333525 0.398063 0.080482 0.293266 0.220907 0.405345 Consensus sequence: HDDDATTTTATTKVRDB Alignment: HDDDATTTTATTKVRDB --AAATTKTATTTAWT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00169 Lmx1b Reverse Complement Original Motif Backward 4 14 0.027597 Species: Mus musculus Original motif 0.336931 0.220707 0.306671 0.135692 0.251068 0.126246 0.394767 0.227919 0.318914 0.086872 0.150663 0.443551 0.368649 0.051170 0.092361 0.487819 0.359682 0.088506 0.064771 0.487041 0.019535 0.162692 0.015925 0.801848 0.015902 0.024224 0.000652 0.959222 0.974698 0.006086 0.002334 0.016882 0.978085 0.001281 0.005421 0.015214 0.015214 0.005421 0.001281 0.978085 0.016882 0.002334 0.006086 0.974698 0.959222 0.000652 0.024224 0.015902 0.801848 0.015925 0.162692 0.019535 0.242323 0.115688 0.116364 0.525625 0.283782 0.097563 0.188384 0.430271 0.252386 0.255982 0.135946 0.355686 0.141430 0.249462 0.350759 0.258349 Consensus sequence: VDWWWTTAATTAATDHB Reverse complement motif 0.141430 0.350759 0.249462 0.258349 0.355686 0.255982 0.135946 0.252386 0.430271 0.097563 0.188384 0.283782 0.525625 0.115688 0.116364 0.242323 0.019535 0.015925 0.162692 0.801848 0.015902 0.000652 0.024224 0.959222 0.974698 0.002334 0.006086 0.016882 0.978085 0.005421 0.001281 0.015214 0.015214 0.001281 0.005421 0.978085 0.016882 0.006086 0.002334 0.974698 0.959222 0.024224 0.000652 0.015902 0.801848 0.162692 0.015925 0.019535 0.487041 0.088506 0.064771 0.359682 0.487819 0.051170 0.092361 0.368649 0.443551 0.086872 0.150663 0.318914 0.251068 0.394767 0.126246 0.227919 0.135692 0.220707 0.306671 0.336931 Consensus sequence: BHDATTAATTAAWWWHB Alignment: VDWWWTTAATTAATDHB AAATTKTATTTAWT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00212 Lhx5 Reverse Complement Reverse Complement Backward 4 14 0.027612 Species: Mus musculus Original motif 0.192127 0.348816 0.300474 0.158583 0.251871 0.201197 0.314740 0.232192 0.469240 0.195840 0.137749 0.197171 0.620351 0.063061 0.196615 0.119973 0.026357 0.096838 0.024928 0.851877 0.010301 0.066114 0.000301 0.923283 0.980649 0.007663 0.010886 0.000802 0.981397 0.001294 0.004654 0.012655 0.012655 0.004654 0.001294 0.981397 0.000802 0.010886 0.007663 0.980649 0.923283 0.000301 0.066114 0.010301 0.851877 0.024928 0.096838 0.026357 0.528438 0.142302 0.071537 0.257724 0.296647 0.115284 0.062688 0.525382 0.401193 0.235971 0.157675 0.205160 0.309966 0.315367 0.145959 0.228708 0.089761 0.287439 0.205359 0.417441 Consensus sequence: VDHATTAATTAAAWHHB Reverse complement motif 0.417441 0.287439 0.205359 0.089761 0.309966 0.145959 0.315367 0.228708 0.205160 0.235971 0.157675 0.401193 0.525382 0.115284 0.062688 0.296647 0.257724 0.142302 0.071537 0.528438 0.026357 0.024928 0.096838 0.851877 0.010301 0.000301 0.066114 0.923283 0.980649 0.010886 0.007663 0.000802 0.981397 0.004654 0.001294 0.012655 0.012655 0.001294 0.004654 0.981397 0.000802 0.007663 0.010886 0.980649 0.923283 0.066114 0.000301 0.010301 0.851877 0.096838 0.024928 0.026357 0.119973 0.063061 0.196615 0.620351 0.197171 0.195840 0.137749 0.469240 0.251871 0.314740 0.201197 0.232192 0.192127 0.300474 0.348816 0.158583 Consensus sequence: VDHWTTTAATTAATHHV Alignment: VDHWTTTAATTAATHHV AAATTKTATTTAWT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00016 Sry_primary Original Motif Original Motif Forward 1 14 0.027741 Species: Mus musculus Original motif 0.173554 0.244647 0.248735 0.333064 0.317107 0.259459 0.118295 0.305139 0.240662 0.181192 0.247535 0.330610 0.431219 0.156611 0.141440 0.270729 0.958925 0.011290 0.006882 0.022903 0.049111 0.011065 0.012843 0.926981 0.072130 0.013140 0.006115 0.908615 0.917456 0.003886 0.069860 0.008798 0.008798 0.069860 0.003886 0.917456 0.908615 0.006115 0.013140 0.072130 0.926981 0.012843 0.011065 0.049111 0.022903 0.006882 0.011290 0.958925 0.422656 0.136248 0.266001 0.175095 0.336161 0.121946 0.177188 0.364705 0.247357 0.097153 0.248929 0.406561 0.246369 0.321670 0.222124 0.209837 Consensus sequence: BHDHATTATAATDDDV Reverse complement motif 0.246369 0.222124 0.321670 0.209837 0.406561 0.097153 0.248929 0.247357 0.364705 0.121946 0.177188 0.336161 0.175095 0.136248 0.266001 0.422656 0.958925 0.006882 0.011290 0.022903 0.049111 0.012843 0.011065 0.926981 0.072130 0.006115 0.013140 0.908615 0.917456 0.069860 0.003886 0.008798 0.008798 0.003886 0.069860 0.917456 0.908615 0.013140 0.006115 0.072130 0.926981 0.011065 0.012843 0.049111 0.022903 0.011290 0.006882 0.958925 0.270729 0.156611 0.141440 0.431219 0.330610 0.181192 0.247535 0.240662 0.305139 0.259459 0.118295 0.317107 0.333064 0.244647 0.248735 0.173554 Consensus sequence: VDDDATTATAATHDHV Alignment: BHDHATTATAATDDDV AWTAAATAYAATTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00180 Hoxd13 Reverse Complement Reverse Complement Backward 2 14 0.029093 Species: Mus musculus Original motif 0.279189 0.316791 0.190404 0.213616 0.297705 0.175638 0.191020 0.335637 0.333485 0.203858 0.174034 0.288623 0.046444 0.540349 0.083237 0.329969 0.016780 0.648667 0.003870 0.330682 0.679959 0.116873 0.002745 0.200422 0.936496 0.002013 0.026876 0.034615 0.004741 0.008734 0.003861 0.982665 0.904624 0.000869 0.005345 0.089162 0.967883 0.002295 0.001003 0.028819 0.980087 0.004768 0.002887 0.012258 0.898523 0.041633 0.022776 0.037069 0.246903 0.292446 0.069240 0.391411 0.192528 0.300908 0.105655 0.400908 0.247610 0.343317 0.190760 0.218313 0.246702 0.253595 0.176298 0.323404 Consensus sequence: HDHYYAATAAAAHHHH Reverse complement motif 0.323404 0.253595 0.176298 0.246702 0.247610 0.190760 0.343317 0.218313 0.400908 0.300908 0.105655 0.192528 0.391411 0.292446 0.069240 0.246903 0.037069 0.041633 0.022776 0.898523 0.012258 0.004768 0.002887 0.980087 0.028819 0.002295 0.001003 0.967883 0.089162 0.000869 0.005345 0.904624 0.982665 0.008734 0.003861 0.004741 0.034615 0.002013 0.026876 0.936496 0.200422 0.116873 0.002745 0.679959 0.016780 0.003870 0.648667 0.330682 0.046444 0.083237 0.540349 0.329969 0.288623 0.203858 0.174034 0.333485 0.335637 0.175638 0.191020 0.297705 0.279189 0.190404 0.316791 0.213616 Consensus sequence: HDHHTTTTATTKKHDD Alignment: HDHHTTTTATTKKHDD -AAATTKTATTTAWT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 6 Motif name: Motif 6 Original motif 0.750000 0.000000 0.000000 0.250000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.500000 0.000000 0.250000 0.250000 0.000000 0.000000 0.875000 0.125000 0.875000 0.125000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.125000 0.375000 0.000000 0.250000 0.125000 0.000000 0.625000 1.000000 0.000000 0.000000 0.000000 0.625000 0.000000 0.000000 0.375000 0.500000 0.000000 0.000000 0.500000 Consensus sequence: AATTYDGAARTAWW Reserve complement motif 0.500000 0.000000 0.000000 0.500000 0.375000 0.000000 0.000000 0.625000 0.000000 0.000000 0.000000 1.000000 0.625000 0.125000 0.000000 0.250000 0.000000 0.125000 0.375000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.125000 0.000000 0.875000 0.000000 0.875000 0.000000 0.125000 0.250000 0.000000 0.250000 0.500000 0.000000 0.000000 0.500000 0.500000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.250000 0.000000 0.000000 0.750000 Consensus sequence: WWTAKTTCDKAATT ************************************************************************ Best Matches for Motif ID 6 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00015 Ehf_secondary Original Motif Reverse Complement Forward 2 14 0.043533 Species: Mus musculus Original motif 0.307205 0.034440 0.106635 0.551720 0.363403 0.109044 0.178564 0.348988 0.296409 0.241179 0.359666 0.102746 0.239304 0.113815 0.274725 0.372156 0.742404 0.063158 0.121573 0.072864 0.160692 0.233592 0.260062 0.345653 0.073999 0.014007 0.012486 0.899508 0.074874 0.014298 0.009907 0.900921 0.022623 0.925966 0.008378 0.043033 0.027723 0.921907 0.020088 0.030282 0.029405 0.074965 0.595500 0.300130 0.776422 0.083024 0.041124 0.099429 0.270188 0.158044 0.134940 0.436827 0.070564 0.545506 0.345463 0.038467 0.316962 0.128938 0.151826 0.402274 0.327940 0.106122 0.104097 0.461841 Consensus sequence: WDVDABTTCCKAHSDW Reverse complement motif 0.461841 0.106122 0.104097 0.327940 0.402274 0.128938 0.151826 0.316962 0.070564 0.345463 0.545506 0.038467 0.436827 0.158044 0.134940 0.270188 0.099429 0.083024 0.041124 0.776422 0.029405 0.595500 0.074965 0.300130 0.027723 0.020088 0.921907 0.030282 0.022623 0.008378 0.925966 0.043033 0.900921 0.014298 0.009907 0.074874 0.899508 0.014007 0.012486 0.073999 0.345653 0.233592 0.260062 0.160692 0.072864 0.063158 0.121573 0.742404 0.372156 0.113815 0.274725 0.239304 0.296409 0.359666 0.241179 0.102746 0.348988 0.109044 0.178564 0.363403 0.551720 0.034440 0.106635 0.307205 Consensus sequence: WDSHTYGGAAVTDVDW Alignment: WDSHTYGGAAVTDVDW -AATTYDGAARTAWW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00044 Mafk_primary Original Motif Reverse Complement Forward 1 14 0.044346 Species: Mus musculus Original motif 0.245931 0.193118 0.199428 0.361523 0.489106 0.078574 0.157014 0.275306 0.744659 0.025715 0.102440 0.127186 0.677561 0.030532 0.064134 0.227772 0.621949 0.037389 0.034818 0.305844 0.394828 0.100590 0.123295 0.381287 0.040491 0.082155 0.007425 0.869929 0.023425 0.010118 0.934562 0.031895 0.108761 0.847231 0.005930 0.038078 0.049587 0.025925 0.010216 0.914271 0.048851 0.008289 0.821725 0.121135 0.919694 0.018019 0.017253 0.045033 0.013536 0.716811 0.037362 0.232291 0.148097 0.100721 0.092846 0.658336 0.185674 0.220883 0.168608 0.424835 Consensus sequence: DWAAAWTGCTGACTH Reverse complement motif 0.424835 0.220883 0.168608 0.185674 0.658336 0.100721 0.092846 0.148097 0.013536 0.037362 0.716811 0.232291 0.045033 0.018019 0.017253 0.919694 0.048851 0.821725 0.008289 0.121135 0.914271 0.025925 0.010216 0.049587 0.108761 0.005930 0.847231 0.038078 0.023425 0.934562 0.010118 0.031895 0.869929 0.082155 0.007425 0.040491 0.381287 0.100590 0.123295 0.394828 0.305844 0.037389 0.034818 0.621949 0.227772 0.030532 0.064134 0.677561 0.127186 0.025715 0.102440 0.744659 0.275306 0.078574 0.157014 0.489106 0.361523 0.193118 0.199428 0.245931 Consensus sequence: HAGTCAGCAWTTTWD Alignment: DWAAAWTGCTGACTH AATTYDGAARTAWW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_secondary Reverse Complement Reverse Complement Backward 1 14 0.047721 Species: Mus musculus Original motif 0.560226 0.121586 0.083231 0.234957 0.318077 0.149137 0.179955 0.352831 0.482497 0.118420 0.173594 0.225488 0.200166 0.160901 0.191493 0.447440 0.033691 0.569719 0.018901 0.377690 0.638020 0.166545 0.021254 0.174181 0.573953 0.105729 0.009308 0.311010 0.890518 0.053364 0.013424 0.042694 0.910758 0.028166 0.032648 0.028428 0.013358 0.738707 0.023981 0.223953 0.911783 0.018754 0.031898 0.037564 0.702891 0.068940 0.076823 0.151346 0.445507 0.320769 0.057216 0.176507 0.587798 0.129586 0.140592 0.142024 0.258981 0.330939 0.167334 0.242747 0.362022 0.333796 0.145861 0.158320 Consensus sequence: ADDDYAWAACAAMAHH Reverse complement motif 0.158320 0.333796 0.145861 0.362022 0.258981 0.167334 0.330939 0.242747 0.142024 0.129586 0.140592 0.587798 0.176507 0.320769 0.057216 0.445507 0.151346 0.068940 0.076823 0.702891 0.037564 0.018754 0.031898 0.911783 0.013358 0.023981 0.738707 0.223953 0.028428 0.028166 0.032648 0.910758 0.042694 0.053364 0.013424 0.890518 0.311010 0.105729 0.009308 0.573953 0.174181 0.166545 0.021254 0.638020 0.033691 0.018901 0.569719 0.377690 0.447440 0.160901 0.191493 0.200166 0.225488 0.118420 0.173594 0.482497 0.352831 0.149137 0.179955 0.318077 0.234957 0.121586 0.083231 0.560226 Consensus sequence: HDTYTTGTTWTKDDDT Alignment: HDTYTTGTTWTKDDDT --WWTAKTTCDKAATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00255 Dbx1 Reverse Complement Reverse Complement Forward 3 14 0.048156 Species: Mus musculus Original motif 0.193358 0.228955 0.160692 0.416995 0.611960 0.068099 0.048494 0.271446 0.459770 0.057385 0.307824 0.175021 0.226103 0.127408 0.101076 0.545413 0.241226 0.228640 0.067165 0.462969 0.621421 0.137382 0.078412 0.162785 0.737972 0.031899 0.051833 0.178295 0.110802 0.098497 0.073668 0.717033 0.129567 0.110629 0.036048 0.723756 0.729342 0.031636 0.088480 0.150541 0.540257 0.104927 0.048065 0.306750 0.195987 0.148698 0.098709 0.556606 0.587529 0.072583 0.170635 0.169252 0.497416 0.161804 0.219409 0.121371 0.278831 0.114362 0.139037 0.467771 0.297462 0.189119 0.187754 0.325665 0.397268 0.140582 0.287428 0.174722 Consensus sequence: HARTHAATTAWTAVDHD Reverse complement motif 0.174722 0.140582 0.287428 0.397268 0.325665 0.189119 0.187754 0.297462 0.467771 0.114362 0.139037 0.278831 0.121371 0.161804 0.219409 0.497416 0.169252 0.072583 0.170635 0.587529 0.556606 0.148698 0.098709 0.195987 0.306750 0.104927 0.048065 0.540257 0.150541 0.031636 0.088480 0.729342 0.723756 0.110629 0.036048 0.129567 0.717033 0.098497 0.073668 0.110802 0.178295 0.031899 0.051833 0.737972 0.162785 0.137382 0.078412 0.621421 0.462969 0.228640 0.067165 0.241226 0.545413 0.127408 0.101076 0.226103 0.175021 0.057385 0.307824 0.459770 0.271446 0.068099 0.048494 0.611960 0.416995 0.228955 0.160692 0.193358 Consensus sequence: DHDBTAWTAATTHAKTH Alignment: DHDBTAWTAATTHAKTH --WWTAKTTCDKAATT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00097 Mtf1_secondary Reverse Complement Reverse Complement Backward 1 14 0.049524 Species: Mus musculus Original motif 0.492974 0.180918 0.148012 0.178096 0.368251 0.203899 0.207777 0.220074 0.507882 0.155465 0.113772 0.222882 0.123798 0.114285 0.153584 0.608334 0.587677 0.127243 0.066116 0.218964 0.403397 0.150410 0.140817 0.305376 0.186086 0.147802 0.466164 0.199948 0.681097 0.135011 0.082959 0.100934 0.717748 0.075425 0.052584 0.154243 0.649784 0.103313 0.082872 0.164031 0.424054 0.187232 0.138687 0.250027 0.583515 0.181222 0.122887 0.112376 0.353266 0.175583 0.217918 0.253234 0.312794 0.344669 0.278065 0.064473 Consensus sequence: HDATAHDAAAHADV Reverse complement motif 0.312794 0.278065 0.344669 0.064473 0.253234 0.175583 0.217918 0.353266 0.112376 0.181222 0.122887 0.583515 0.250027 0.187232 0.138687 0.424054 0.164031 0.103313 0.082872 0.649784 0.154243 0.075425 0.052584 0.717748 0.100934 0.135011 0.082959 0.681097 0.186086 0.466164 0.147802 0.199948 0.305376 0.150410 0.140817 0.403397 0.218964 0.127243 0.066116 0.587677 0.608334 0.114285 0.153584 0.123798 0.222882 0.155465 0.113772 0.507882 0.220074 0.203899 0.207777 0.368251 0.178096 0.180918 0.148012 0.492974 Consensus sequence: VDTHTTTHHTATDH Alignment: VDTHTTTHHTATDH WWTAKTTCDKAATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 7 Motif name: Motif 7 Original motif 0.094340 0.566037 0.113208 0.226415 0.150943 0.547170 0.283019 0.018868 0.018868 0.000000 0.622641 0.358491 0.000000 0.943396 0.056604 0.000000 0.018868 0.811321 0.000000 0.169811 0.018868 0.943396 0.000000 0.037736 0.000000 0.981132 0.018868 0.000000 0.037736 0.000000 0.867924 0.094340 0.018868 0.981132 0.000000 0.000000 0.075472 0.924528 0.000000 0.000000 0.000000 0.830189 0.000000 0.169811 0.132075 0.773585 0.000000 0.094340 0.000000 0.433962 0.377358 0.188679 0.075472 0.358491 0.075472 0.490566 Consensus sequence: CSKCCCCGCCCCSY Reserve complement motif 0.490566 0.358491 0.075472 0.075472 0.000000 0.377358 0.433962 0.188679 0.132075 0.000000 0.773585 0.094340 0.000000 0.000000 0.830189 0.169811 0.075472 0.000000 0.924528 0.000000 0.018868 0.000000 0.981132 0.000000 0.037736 0.867924 0.000000 0.094340 0.000000 0.018868 0.981132 0.000000 0.018868 0.000000 0.943396 0.037736 0.018868 0.000000 0.811321 0.169811 0.000000 0.056604 0.943396 0.000000 0.018868 0.622641 0.000000 0.358491 0.150943 0.283019 0.547170 0.018868 0.094340 0.113208 0.566037 0.226415 Consensus sequence: MSGGGGCGGGGYSG ************************************************************************ Best Matches for Motif ID 7 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Reverse Complement Reverse Complement Backward 2 14 0.000548 Species: Mus musculus Original motif 0.204514 0.198353 0.171218 0.425915 0.167188 0.296785 0.246082 0.289946 0.267330 0.148001 0.398674 0.185994 0.549386 0.060167 0.337100 0.053347 0.050746 0.900013 0.022169 0.027073 0.037905 0.920332 0.008360 0.033403 0.410356 0.566702 0.016267 0.006675 0.009526 0.982354 0.001060 0.007060 0.204292 0.001084 0.748567 0.046056 0.003955 0.988490 0.002821 0.004735 0.004264 0.988826 0.004311 0.002598 0.002758 0.929549 0.001244 0.066448 0.260332 0.421683 0.024720 0.293265 0.184798 0.247697 0.085237 0.482268 0.347537 0.197344 0.139961 0.315159 0.255281 0.166620 0.242297 0.335802 Consensus sequence: HBDRCCMCGCCCHHHD Reverse complement motif 0.335802 0.166620 0.242297 0.255281 0.315159 0.197344 0.139961 0.347537 0.482268 0.247697 0.085237 0.184798 0.260332 0.024720 0.421683 0.293265 0.002758 0.001244 0.929549 0.066448 0.004264 0.004311 0.988826 0.002598 0.003955 0.002821 0.988490 0.004735 0.204292 0.748567 0.001084 0.046056 0.009526 0.001060 0.982354 0.007060 0.410356 0.016267 0.566702 0.006675 0.037905 0.008360 0.920332 0.033403 0.050746 0.022169 0.900013 0.027073 0.053347 0.060167 0.337100 0.549386 0.267330 0.398674 0.148001 0.185994 0.167188 0.246082 0.296785 0.289946 0.425915 0.198353 0.171218 0.204514 Consensus sequence: DHHDGGGCGRGGKHBH Alignment: DHHDGGGCGRGGKHBH -MSGGGGCGGGGYSG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Original Motif Original Motif Forward 2 14 0.007414 Species: Mus musculus Original motif 0.150668 0.131779 0.245665 0.471887 0.316817 0.287314 0.150829 0.245040 0.256473 0.409066 0.109700 0.224761 0.210646 0.220222 0.345010 0.224122 0.166679 0.508939 0.081676 0.242705 0.049351 0.759380 0.088489 0.102780 0.047598 0.785546 0.121957 0.044898 0.004606 0.944933 0.034696 0.015764 0.040252 0.050652 0.890382 0.018713 0.003038 0.913699 0.022449 0.060814 0.028672 0.941477 0.012276 0.017575 0.635243 0.139731 0.110495 0.114531 0.240016 0.385948 0.182848 0.191188 0.210430 0.274127 0.085171 0.430272 0.088118 0.454598 0.208989 0.248295 0.181269 0.265028 0.149023 0.404680 0.101070 0.252682 0.368542 0.277706 Consensus sequence: DHHBCCCCGCCAHHBHB Reverse complement motif 0.101070 0.368542 0.252682 0.277706 0.404680 0.265028 0.149023 0.181269 0.088118 0.208989 0.454598 0.248295 0.430272 0.274127 0.085171 0.210430 0.240016 0.182848 0.385948 0.191188 0.114531 0.139731 0.110495 0.635243 0.028672 0.012276 0.941477 0.017575 0.003038 0.022449 0.913699 0.060814 0.040252 0.890382 0.050652 0.018713 0.004606 0.034696 0.944933 0.015764 0.047598 0.121957 0.785546 0.044898 0.049351 0.088489 0.759380 0.102780 0.166679 0.081676 0.508939 0.242705 0.210646 0.345010 0.220222 0.224122 0.256473 0.109700 0.409066 0.224761 0.245040 0.287314 0.150829 0.316817 0.471887 0.131779 0.245665 0.150668 Consensus sequence: BHBHDTGGCGGGGBDHD Alignment: DHHBCCCCGCCAHHBHB -CSKCCCCGCCCCSY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Original Motif Original Motif Forward 1 14 0.011416 Species: Mus musculus Original motif 0.136946 0.396508 0.135309 0.331236 0.185528 0.417538 0.215409 0.181525 0.171276 0.341901 0.172832 0.313991 0.145641 0.590572 0.146376 0.117412 0.138035 0.660416 0.114016 0.087533 0.222728 0.750532 0.007528 0.019212 0.024633 0.963314 0.001894 0.010159 0.009557 0.979956 0.000642 0.009844 0.010416 0.977424 0.000541 0.011619 0.026401 0.956740 0.001544 0.015314 0.195502 0.755959 0.011060 0.037480 0.491291 0.364785 0.025613 0.118311 0.305153 0.398160 0.071680 0.225008 0.253497 0.232647 0.213246 0.300610 0.156964 0.297876 0.144683 0.400477 0.179549 0.292514 0.319462 0.208475 Consensus sequence: HVBCCCCCCCCMHHHB Reverse complement motif 0.179549 0.319462 0.292514 0.208475 0.400477 0.297876 0.144683 0.156964 0.300610 0.232647 0.213246 0.253497 0.305153 0.071680 0.398160 0.225008 0.118311 0.364785 0.025613 0.491291 0.195502 0.011060 0.755959 0.037480 0.026401 0.001544 0.956740 0.015314 0.010416 0.000541 0.977424 0.011619 0.009557 0.000642 0.979956 0.009844 0.024633 0.001894 0.963314 0.010159 0.222728 0.007528 0.750532 0.019212 0.138035 0.114016 0.660416 0.087533 0.145641 0.146376 0.590572 0.117412 0.171276 0.172832 0.341901 0.313991 0.185528 0.215409 0.417538 0.181525 0.136946 0.135309 0.396508 0.331236 Consensus sequence: BHHDYGGGGGGGGBVD Alignment: HVBCCCCCCCCMHHHB CSKCCCCGCCCCSY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Original Motif Original Motif Forward 2 14 0.013330 Species: Mus musculus Original motif 0.201535 0.165213 0.201324 0.431929 0.136153 0.443451 0.179132 0.241264 0.263149 0.555137 0.067983 0.113731 0.142183 0.737634 0.045722 0.074461 0.044982 0.884112 0.045356 0.025549 0.246434 0.590578 0.022655 0.140333 0.123049 0.591257 0.033072 0.252622 0.018153 0.944742 0.010254 0.026851 0.035459 0.953844 0.003988 0.006709 0.020000 0.954344 0.005966 0.019690 0.015299 0.964390 0.006755 0.013557 0.028565 0.936152 0.011660 0.023623 0.300127 0.517309 0.029700 0.152863 0.159063 0.513443 0.051834 0.275660 0.158172 0.647055 0.133256 0.061516 Consensus sequence: DBCCCCCCCCCCMYC Reverse complement motif 0.158172 0.133256 0.647055 0.061516 0.159063 0.051834 0.513443 0.275660 0.300127 0.029700 0.517309 0.152863 0.028565 0.011660 0.936152 0.023623 0.015299 0.006755 0.964390 0.013557 0.020000 0.005966 0.954344 0.019690 0.035459 0.003988 0.953844 0.006709 0.018153 0.010254 0.944742 0.026851 0.123049 0.033072 0.591257 0.252622 0.246434 0.022655 0.590578 0.140333 0.044982 0.045356 0.884112 0.025549 0.142183 0.045722 0.737634 0.074461 0.263149 0.067983 0.555137 0.113731 0.136153 0.179132 0.443451 0.241264 0.431929 0.165213 0.201324 0.201535 Consensus sequence: GKRGGGGGGGGGGBD Alignment: DBCCCCCCCCCCMYC -CSKCCCCGCCCCSY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondary Reverse Complement Reverse Complement Forward 4 14 0.015814 Species: Mus musculus Original motif 0.162979 0.284781 0.237433 0.314807 0.182449 0.447584 0.069464 0.300502 0.298973 0.261014 0.213211 0.226802 0.136039 0.433062 0.144274 0.286625 0.180084 0.395933 0.158565 0.265418 0.069354 0.748510 0.068898 0.113238 0.060485 0.717828 0.075333 0.146354 0.023280 0.071762 0.645500 0.259457 0.166896 0.749762 0.062730 0.020612 0.050401 0.775248 0.089072 0.085279 0.103847 0.767557 0.068804 0.059791 0.064815 0.748318 0.114588 0.072280 0.340921 0.071942 0.242981 0.344157 0.301967 0.263512 0.165927 0.268594 0.479800 0.222955 0.118441 0.178803 0.229469 0.283621 0.143099 0.343811 0.261733 0.180191 0.169905 0.388170 Consensus sequence: BHHBHCCGCCCCDHHHH Reverse complement motif 0.388170 0.180191 0.169905 0.261733 0.343811 0.283621 0.143099 0.229469 0.178803 0.222955 0.118441 0.479800 0.268594 0.263512 0.165927 0.301967 0.344157 0.071942 0.242981 0.340921 0.064815 0.114588 0.748318 0.072280 0.103847 0.068804 0.767557 0.059791 0.050401 0.089072 0.775248 0.085279 0.166896 0.062730 0.749762 0.020612 0.023280 0.645500 0.071762 0.259457 0.060485 0.075333 0.717828 0.146354 0.069354 0.068898 0.748510 0.113238 0.180084 0.158565 0.395933 0.265418 0.136039 0.144274 0.433062 0.286625 0.226802 0.261014 0.213211 0.298973 0.182449 0.069464 0.447584 0.300502 0.314807 0.284781 0.237433 0.162979 Consensus sequence: HHHHDGGGGCGGDBHDV Alignment: HHHHDGGGGCGGDBHDV ---MSGGGGCGGGGYSG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 8 Motif name: Motif 8 Original motif 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.500000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: AAATRWTAAAATCA Reserve complement motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.500000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: TGATTTTAWKATTT ************************************************************************ Best Matches for Motif ID 8 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00173 Hoxc13 Reverse Complement Reverse Complement Backward 3 14 0.032574 Species: Mus musculus Original motif 0.329750 0.218875 0.126085 0.325290 0.359529 0.208886 0.161839 0.269746 0.422361 0.147886 0.154953 0.274800 0.109858 0.231755 0.365475 0.292912 0.026731 0.838331 0.133884 0.001054 0.001860 0.034063 0.001665 0.962411 0.018979 0.887508 0.000421 0.093092 0.394654 0.000419 0.598992 0.005935 0.001269 0.017200 0.000611 0.980919 0.897441 0.000397 0.003712 0.098450 0.958993 0.000593 0.000873 0.039541 0.981006 0.004963 0.001000 0.013032 0.645464 0.081310 0.051136 0.222090 0.298300 0.138406 0.094463 0.468832 0.158954 0.229153 0.156589 0.455305 0.325279 0.092193 0.241621 0.340907 Consensus sequence: HHDBCTCRTAAAAWHD Reverse complement motif 0.340907 0.092193 0.241621 0.325279 0.455305 0.229153 0.156589 0.158954 0.468832 0.138406 0.094463 0.298300 0.222090 0.081310 0.051136 0.645464 0.013032 0.004963 0.001000 0.981006 0.039541 0.000593 0.000873 0.958993 0.098450 0.000397 0.003712 0.897441 0.980919 0.017200 0.000611 0.001269 0.394654 0.598992 0.000419 0.005935 0.018979 0.000421 0.887508 0.093092 0.962411 0.034063 0.001665 0.001860 0.026731 0.133884 0.838331 0.001054 0.109858 0.365475 0.231755 0.292912 0.274800 0.147886 0.154953 0.422361 0.269746 0.208886 0.161839 0.359529 0.325290 0.218875 0.126085 0.329750 Consensus sequence: DHWTTTTAMGAGBDHH Alignment: DHWTTTTAMGAGBDHH TGATTTTAWKATTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00235 Hoxc11 Reverse Complement Reverse Complement Backward 3 14 0.036026 Species: Mus musculus Original motif 0.233269 0.248491 0.135443 0.382797 0.530699 0.117734 0.196458 0.155109 0.520162 0.128349 0.129047 0.222442 0.383288 0.142763 0.265367 0.208581 0.082604 0.036330 0.879729 0.001337 0.001490 0.025603 0.000959 0.971949 0.011271 0.977559 0.000430 0.010739 0.234170 0.001531 0.762912 0.001387 0.002139 0.001352 0.004590 0.991918 0.858371 0.001955 0.000717 0.138958 0.981016 0.000748 0.001915 0.016321 0.985345 0.003895 0.001793 0.008967 0.542364 0.130700 0.106606 0.220330 0.222953 0.268192 0.191329 0.317526 0.353019 0.168556 0.262332 0.216093 0.196584 0.119005 0.352701 0.331710 Consensus sequence: HAADGTCGTAAAAHDD Reverse complement motif 0.196584 0.352701 0.119005 0.331710 0.216093 0.168556 0.262332 0.353019 0.317526 0.268192 0.191329 0.222953 0.220330 0.130700 0.106606 0.542364 0.008967 0.003895 0.001793 0.985345 0.016321 0.000748 0.001915 0.981016 0.138958 0.001955 0.000717 0.858371 0.991918 0.001352 0.004590 0.002139 0.234170 0.762912 0.001531 0.001387 0.011271 0.000430 0.977559 0.010739 0.971949 0.025603 0.000959 0.001490 0.082604 0.879729 0.036330 0.001337 0.208581 0.142763 0.265367 0.383288 0.222442 0.128349 0.129047 0.520162 0.155109 0.117734 0.196458 0.530699 0.382797 0.248491 0.135443 0.233269 Consensus sequence: HDHTTTTACGACDTTH Alignment: HDHTTTTACGACDTTH TGATTTTAWKATTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00183 Hoxa13 Reverse Complement Reverse Complement Forward 1 14 0.038057 Species: Mus musculus Original motif 0.349550 0.172903 0.163906 0.313641 0.315011 0.194211 0.195948 0.294830 0.368766 0.201805 0.178542 0.250887 0.145880 0.295376 0.295376 0.263368 0.015331 0.929453 0.054675 0.000540 0.001365 0.028771 0.001559 0.968304 0.010908 0.940311 0.000350 0.048431 0.197963 0.000370 0.796987 0.004680 0.001758 0.010551 0.000808 0.986883 0.926536 0.000378 0.002732 0.070353 0.969248 0.000662 0.000790 0.029301 0.981050 0.005733 0.000805 0.012411 0.621561 0.122585 0.047087 0.208767 0.297436 0.133532 0.093665 0.475368 0.178579 0.227666 0.232495 0.361260 0.234668 0.133863 0.220639 0.410829 Consensus sequence: HDHBCTCGTAAAAWBD Reverse complement motif 0.410829 0.133863 0.220639 0.234668 0.361260 0.227666 0.232495 0.178579 0.475368 0.133532 0.093665 0.297436 0.208767 0.122585 0.047087 0.621561 0.012411 0.005733 0.000805 0.981050 0.029301 0.000662 0.000790 0.969248 0.070353 0.000378 0.002732 0.926536 0.986883 0.010551 0.000808 0.001758 0.197963 0.796987 0.000370 0.004680 0.010908 0.000350 0.940311 0.048431 0.968304 0.028771 0.001559 0.001365 0.015331 0.054675 0.929453 0.000540 0.145880 0.295376 0.295376 0.263368 0.250887 0.201805 0.178542 0.368766 0.294830 0.194211 0.195948 0.315011 0.313641 0.172903 0.163906 0.349550 Consensus sequence: DVWTTTTACGAGBHDH Alignment: DVWTTTTACGAGBHDH TGATTTTAWKATTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00246 Hoxa11 Reverse Complement Reverse Complement Forward 1 14 0.039136 Species: Mus musculus Original motif 0.250495 0.214554 0.138272 0.396679 0.492850 0.123424 0.196803 0.186923 0.540281 0.151603 0.140529 0.167586 0.428463 0.099563 0.270775 0.201200 0.102254 0.050731 0.845038 0.001977 0.001884 0.019008 0.001029 0.978079 0.016931 0.973797 0.000596 0.008676 0.258728 0.001705 0.738135 0.001431 0.003545 0.001680 0.003370 0.991405 0.832666 0.002250 0.000866 0.164218 0.983610 0.001278 0.002546 0.012566 0.980677 0.005645 0.001242 0.012435 0.599219 0.090422 0.088183 0.222176 0.212685 0.399896 0.114218 0.273202 0.287588 0.220283 0.249419 0.242710 0.152138 0.145873 0.312609 0.389380 Consensus sequence: HDADGTCGTAAAAHDD Reverse complement motif 0.389380 0.145873 0.312609 0.152138 0.242710 0.220283 0.249419 0.287588 0.212685 0.114218 0.399896 0.273202 0.222176 0.090422 0.088183 0.599219 0.012435 0.005645 0.001242 0.980677 0.012566 0.001278 0.002546 0.983610 0.164218 0.002250 0.000866 0.832666 0.991405 0.001680 0.003370 0.003545 0.258728 0.738135 0.001705 0.001431 0.016931 0.000596 0.973797 0.008676 0.978079 0.019008 0.001029 0.001884 0.102254 0.845038 0.050731 0.001977 0.201200 0.099563 0.270775 0.428463 0.167586 0.151603 0.140529 0.540281 0.186923 0.123424 0.196803 0.492850 0.396679 0.214554 0.138272 0.250495 Consensus sequence: DDDTTTTACGACDTDH Alignment: DDDTTTTACGACDTDH TGATTTTAWKATTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00180 Hoxd13 Original Motif Original Motif Forward 2 14 0.039137 Species: Mus musculus Original motif 0.279189 0.316791 0.190404 0.213616 0.297705 0.175638 0.191020 0.335637 0.333485 0.203858 0.174034 0.288623 0.046444 0.540349 0.083237 0.329969 0.016780 0.648667 0.003870 0.330682 0.679959 0.116873 0.002745 0.200422 0.936496 0.002013 0.026876 0.034615 0.004741 0.008734 0.003861 0.982665 0.904624 0.000869 0.005345 0.089162 0.967883 0.002295 0.001003 0.028819 0.980087 0.004768 0.002887 0.012258 0.898523 0.041633 0.022776 0.037069 0.246903 0.292446 0.069240 0.391411 0.192528 0.300908 0.105655 0.400908 0.247610 0.343317 0.190760 0.218313 0.246702 0.253595 0.176298 0.323404 Consensus sequence: HDHYYAATAAAAHHHH Reverse complement motif 0.323404 0.253595 0.176298 0.246702 0.247610 0.190760 0.343317 0.218313 0.400908 0.300908 0.105655 0.192528 0.391411 0.292446 0.069240 0.246903 0.037069 0.041633 0.022776 0.898523 0.012258 0.004768 0.002887 0.980087 0.028819 0.002295 0.001003 0.967883 0.089162 0.000869 0.005345 0.904624 0.982665 0.008734 0.003861 0.004741 0.034615 0.002013 0.026876 0.936496 0.200422 0.116873 0.002745 0.679959 0.016780 0.003870 0.648667 0.330682 0.046444 0.083237 0.540349 0.329969 0.288623 0.203858 0.174034 0.333485 0.335637 0.175638 0.191020 0.297705 0.279189 0.190404 0.316791 0.213616 Consensus sequence: HDHHTTTTATTKKHDD Alignment: HDHYYAATAAAAHHHH -AAATRWTAAAATCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 9 Motif name: Motif 9 Original motif 0.916667 0.000000 0.000000 0.083333 0.666667 0.000000 0.083333 0.250000 0.000000 0.000000 0.333333 0.666667 0.333333 0.166667 0.083333 0.416667 0.666667 0.083333 0.083333 0.166667 0.250000 0.000000 0.000000 0.750000 0.916667 0.000000 0.083333 0.000000 0.250000 0.000000 0.000000 0.750000 0.333333 0.083333 0.000000 0.583334 0.000000 0.000000 0.000000 1.000000 0.250000 0.333333 0.166667 0.250000 1.000000 0.000000 0.000000 0.000000 0.666667 0.250000 0.083333 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: AATHATATWTHAAA Reserve complement motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.083333 0.666667 0.000000 0.000000 0.000000 1.000000 0.250000 0.166667 0.333333 0.250000 1.000000 0.000000 0.000000 0.000000 0.583334 0.083333 0.000000 0.333333 0.750000 0.000000 0.000000 0.250000 0.000000 0.000000 0.083333 0.916667 0.750000 0.000000 0.000000 0.250000 0.166667 0.083333 0.083333 0.666667 0.416667 0.166667 0.083333 0.333333 0.666667 0.000000 0.333333 0.000000 0.250000 0.000000 0.083333 0.666667 0.083333 0.000000 0.000000 0.916667 Consensus sequence: TTTDAWATATHATT ************************************************************************ Best Matches for Motif ID 9 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00090 Elf3_secondary Reverse Complement Original Motif Backward 2 14 0.052133 Species: Mus musculus Original motif 0.155083 0.152982 0.490906 0.201030 0.123195 0.312681 0.220770 0.343354 0.110252 0.131358 0.153983 0.604406 0.216489 0.490160 0.101348 0.192003 0.396130 0.292429 0.103252 0.208189 0.634770 0.070898 0.070668 0.223664 0.667102 0.099915 0.067576 0.165407 0.625495 0.095579 0.039353 0.239573 0.717478 0.093228 0.024737 0.164558 0.729965 0.048628 0.024557 0.196850 0.670909 0.118718 0.043692 0.166681 0.689441 0.050145 0.038829 0.221584 0.506735 0.159498 0.095635 0.238132 0.406093 0.298915 0.149902 0.145090 0.193913 0.282078 0.096706 0.427303 0.272324 0.154790 0.262469 0.310417 0.224484 0.458724 0.060144 0.256647 Consensus sequence: DBTHHAAAAAAAAVHDH Reverse complement motif 0.224484 0.060144 0.458724 0.256647 0.310417 0.154790 0.262469 0.272324 0.427303 0.282078 0.096706 0.193913 0.145090 0.298915 0.149902 0.406093 0.238132 0.159498 0.095635 0.506735 0.221584 0.050145 0.038829 0.689441 0.166681 0.118718 0.043692 0.670909 0.196850 0.048628 0.024557 0.729965 0.164558 0.093228 0.024737 0.717478 0.239573 0.095579 0.039353 0.625495 0.165407 0.099915 0.067576 0.667102 0.223664 0.070898 0.070668 0.634770 0.208189 0.292429 0.103252 0.396130 0.216489 0.101348 0.490160 0.192003 0.604406 0.131358 0.153983 0.110252 0.343354 0.312681 0.220770 0.123195 0.155083 0.490906 0.152982 0.201030 Consensus sequence: DDHBTTTTTTTTHDAVH Alignment: DBTHHAAAAAAAAVHDH --TTTDAWATATHATT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00255 Dbx1 Reverse Complement Reverse Complement Forward 3 14 0.052284 Species: Mus musculus Original motif 0.193358 0.228955 0.160692 0.416995 0.611960 0.068099 0.048494 0.271446 0.459770 0.057385 0.307824 0.175021 0.226103 0.127408 0.101076 0.545413 0.241226 0.228640 0.067165 0.462969 0.621421 0.137382 0.078412 0.162785 0.737972 0.031899 0.051833 0.178295 0.110802 0.098497 0.073668 0.717033 0.129567 0.110629 0.036048 0.723756 0.729342 0.031636 0.088480 0.150541 0.540257 0.104927 0.048065 0.306750 0.195987 0.148698 0.098709 0.556606 0.587529 0.072583 0.170635 0.169252 0.497416 0.161804 0.219409 0.121371 0.278831 0.114362 0.139037 0.467771 0.297462 0.189119 0.187754 0.325665 0.397268 0.140582 0.287428 0.174722 Consensus sequence: HARTHAATTAWTAVDHD Reverse complement motif 0.174722 0.140582 0.287428 0.397268 0.325665 0.189119 0.187754 0.297462 0.467771 0.114362 0.139037 0.278831 0.121371 0.161804 0.219409 0.497416 0.169252 0.072583 0.170635 0.587529 0.556606 0.148698 0.098709 0.195987 0.306750 0.104927 0.048065 0.540257 0.150541 0.031636 0.088480 0.729342 0.723756 0.110629 0.036048 0.129567 0.717033 0.098497 0.073668 0.110802 0.178295 0.031899 0.051833 0.737972 0.162785 0.137382 0.078412 0.621421 0.462969 0.228640 0.067165 0.241226 0.545413 0.127408 0.101076 0.226103 0.175021 0.057385 0.307824 0.459770 0.271446 0.068099 0.048494 0.611960 0.416995 0.228955 0.160692 0.193358 Consensus sequence: DHDBTAWTAATTHAKTH Alignment: DHDBTAWTAATTHAKTH --TTTDAWATATHATT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00091 Sox5_secondary Original Motif Original Motif Backward 2 14 0.054846 Species: Mus musculus Original motif 0.246579 0.230352 0.241808 0.281260 0.352611 0.218685 0.156655 0.272048 0.249499 0.128873 0.215834 0.405794 0.007509 0.736577 0.087481 0.168432 0.566572 0.059259 0.191060 0.183109 0.149304 0.024062 0.164680 0.661954 0.540015 0.279108 0.133921 0.046956 0.755323 0.101222 0.038315 0.105140 0.170385 0.095406 0.092958 0.641252 0.097171 0.227591 0.065510 0.609729 0.348302 0.171087 0.180187 0.300424 0.602718 0.200284 0.114330 0.082668 0.142864 0.302784 0.453243 0.101109 0.252334 0.240815 0.258541 0.248309 0.285758 0.214950 0.251057 0.248235 Consensus sequence: DHDCATMATTDASDD Reverse complement motif 0.248235 0.214950 0.251057 0.285758 0.252334 0.258541 0.240815 0.248309 0.142864 0.453243 0.302784 0.101109 0.082668 0.200284 0.114330 0.602718 0.300424 0.171087 0.180187 0.348302 0.609729 0.227591 0.065510 0.097171 0.641252 0.095406 0.092958 0.170385 0.105140 0.101222 0.038315 0.755323 0.046956 0.279108 0.133921 0.540015 0.661954 0.024062 0.164680 0.149304 0.183109 0.059259 0.191060 0.566572 0.007509 0.087481 0.736577 0.168432 0.405794 0.128873 0.215834 0.249499 0.272048 0.218685 0.156655 0.352611 0.281260 0.230352 0.241808 0.246579 Consensus sequence: DHSTDAATYATGDHD Alignment: DHDCATMATTDASDD AATHATATWTHAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00121 Hoxd10 Original Motif Reverse Complement Forward 4 14 0.054968 Species: Mus musculus Original motif 0.405345 0.293266 0.220907 0.080482 0.398063 0.099034 0.333525 0.169378 0.049753 0.190411 0.336789 0.423048 0.243698 0.226261 0.324346 0.205696 0.030873 0.549741 0.008321 0.411065 0.714225 0.228092 0.020960 0.036723 0.833992 0.010944 0.021918 0.133146 0.008898 0.026169 0.008341 0.956591 0.811684 0.004889 0.004751 0.178676 0.952107 0.004322 0.004587 0.038984 0.925365 0.008360 0.006811 0.059464 0.850659 0.058250 0.065237 0.025855 0.193369 0.242985 0.049515 0.514131 0.266774 0.080601 0.239781 0.412844 0.335522 0.125500 0.188170 0.350809 0.407171 0.120540 0.187300 0.284989 0.281181 0.242348 0.160247 0.316224 Consensus sequence: VDKVYAATAAAATDDDH Reverse complement motif 0.316224 0.242348 0.160247 0.281181 0.284989 0.120540 0.187300 0.407171 0.350809 0.125500 0.188170 0.335522 0.412844 0.080601 0.239781 0.266774 0.514131 0.242985 0.049515 0.193369 0.025855 0.058250 0.065237 0.850659 0.059464 0.008360 0.006811 0.925365 0.038984 0.004322 0.004587 0.952107 0.178676 0.004889 0.004751 0.811684 0.956591 0.026169 0.008341 0.008898 0.133146 0.010944 0.021918 0.833992 0.036723 0.228092 0.020960 0.714225 0.030873 0.008321 0.549741 0.411065 0.243698 0.324346 0.226261 0.205696 0.423048 0.190411 0.336789 0.049753 0.169378 0.099034 0.333525 0.398063 0.080482 0.293266 0.220907 0.405345 Consensus sequence: HDDDATTTTATTKVRDB Alignment: HDDDATTTTATTKVRDB ---AATHATATWTHAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00078 Arid3a_primary Original Motif Original Motif Backward 4 14 0.055316 Species: Mus musculus Original motif 0.179646 0.266649 0.382823 0.170882 0.210101 0.218431 0.353260 0.218209 0.182980 0.213084 0.340966 0.262971 0.218158 0.203798 0.187600 0.390444 0.087071 0.110887 0.082136 0.719907 0.043529 0.095870 0.045570 0.815030 0.695645 0.010408 0.181644 0.112302 0.886232 0.003541 0.004701 0.105526 0.105526 0.004701 0.003541 0.886232 0.112302 0.181644 0.010408 0.695645 0.815030 0.045570 0.095870 0.043529 0.719907 0.082136 0.110887 0.087071 0.598597 0.045843 0.085320 0.270240 0.469818 0.282557 0.057345 0.190280 0.233954 0.229161 0.190290 0.346595 0.267839 0.231747 0.133766 0.366648 0.240560 0.300738 0.201112 0.257590 Consensus sequence: VBBHTTAATTAAAMHHH Reverse complement motif 0.240560 0.201112 0.300738 0.257590 0.366648 0.231747 0.133766 0.267839 0.346595 0.229161 0.190290 0.233954 0.190280 0.282557 0.057345 0.469818 0.270240 0.045843 0.085320 0.598597 0.087071 0.082136 0.110887 0.719907 0.043529 0.045570 0.095870 0.815030 0.695645 0.181644 0.010408 0.112302 0.886232 0.004701 0.003541 0.105526 0.105526 0.003541 0.004701 0.886232 0.112302 0.010408 0.181644 0.695645 0.815030 0.095870 0.045570 0.043529 0.719907 0.110887 0.082136 0.087071 0.390444 0.203798 0.187600 0.218158 0.182980 0.340966 0.213084 0.262971 0.210101 0.353260 0.218431 0.218209 0.179646 0.382823 0.266649 0.170882 Consensus sequence: DHHYTTTAATTAAHBBV Alignment: VBBHTTAATTAAAMHHH AATHATATWTHAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 10 Motif name: Motif 10 Original motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: TTTCATAAWT Reserve complement motif 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: AWTTATGAAA ************************************************************************ Best Matches for Motif ID 10 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00118 Pou4f3 Original Motif Reverse Complement Backward 5 10 0.017789 Species: Mus musculus Original motif 0.383079 0.200564 0.157774 0.258582 0.286661 0.232328 0.346094 0.134917 0.183287 0.074980 0.188685 0.553047 0.245056 0.223547 0.014679 0.516718 0.928782 0.007660 0.014149 0.049409 0.008881 0.020425 0.001142 0.969552 0.020532 0.000614 0.002803 0.976051 0.968278 0.003691 0.001780 0.026252 0.986910 0.001908 0.004534 0.006648 0.006532 0.009241 0.001632 0.982594 0.062388 0.006200 0.562032 0.369379 0.937585 0.034112 0.009775 0.018527 0.305324 0.123407 0.348899 0.222371 0.075111 0.110371 0.496285 0.318233 0.221869 0.271240 0.060549 0.446342 0.190858 0.546784 0.055998 0.206361 Consensus sequence: HVTTATTAATKADKHC Reverse complement motif 0.190858 0.055998 0.546784 0.206361 0.446342 0.271240 0.060549 0.221869 0.075111 0.496285 0.110371 0.318233 0.305324 0.348899 0.123407 0.222371 0.018527 0.034112 0.009775 0.937585 0.062388 0.562032 0.006200 0.369379 0.982594 0.009241 0.001632 0.006532 0.006648 0.001908 0.004534 0.986910 0.026252 0.003691 0.001780 0.968278 0.976051 0.000614 0.002803 0.020532 0.969552 0.020425 0.001142 0.008881 0.049409 0.007660 0.014149 0.928782 0.516718 0.223547 0.014679 0.245056 0.553047 0.074980 0.188685 0.183287 0.286661 0.346094 0.232328 0.134917 0.258582 0.200564 0.157774 0.383079 Consensus sequence: GHYHTYATTAATAAVH Alignment: GHYHTYATTAATAAVH --TTTCATAAWT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00211 Pou3f3 Original Motif Original Motif Backward 3 10 0.019230 Species: Mus musculus Original motif 0.402059 0.183334 0.129995 0.284612 0.637165 0.097294 0.089284 0.176258 0.307269 0.160096 0.305393 0.227242 0.342471 0.102992 0.265291 0.289246 0.091600 0.100833 0.033581 0.773986 0.798635 0.078572 0.026801 0.095992 0.006820 0.052860 0.002012 0.938308 0.017076 0.003624 0.947530 0.031771 0.086932 0.905749 0.001612 0.005708 0.983215 0.002160 0.010700 0.003925 0.030968 0.005240 0.011437 0.952355 0.893793 0.010310 0.013393 0.082504 0.666055 0.063676 0.007180 0.263089 0.170333 0.094919 0.231056 0.503693 0.342691 0.132989 0.269857 0.254463 0.371397 0.117426 0.241987 0.269189 0.598148 0.065635 0.098090 0.238127 Consensus sequence: HADDTATGCATAATDDA Reverse complement motif 0.238127 0.065635 0.098090 0.598148 0.269189 0.117426 0.241987 0.371397 0.254463 0.132989 0.269857 0.342691 0.503693 0.094919 0.231056 0.170333 0.263089 0.063676 0.007180 0.666055 0.082504 0.010310 0.013393 0.893793 0.952355 0.005240 0.011437 0.030968 0.003925 0.002160 0.010700 0.983215 0.086932 0.001612 0.905749 0.005708 0.017076 0.947530 0.003624 0.031771 0.938308 0.052860 0.002012 0.006820 0.095992 0.078572 0.026801 0.798635 0.773986 0.100833 0.033581 0.091600 0.289246 0.102992 0.265291 0.342471 0.227242 0.160096 0.305393 0.307269 0.176258 0.097294 0.089284 0.637165 0.284612 0.183334 0.129995 0.402059 Consensus sequence: TDDATTATGCATADDTH Alignment: HADDTATGCATAATDDA -----TTTCATAAWT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00179 Pou2f3 Reverse Complement Original Motif Forward 1 10 0.019308 Species: Mus musculus Original motif 0.163923 0.199410 0.196283 0.440385 0.244854 0.217834 0.151102 0.386210 0.185934 0.134662 0.398787 0.280618 0.090352 0.119462 0.037157 0.753030 0.990346 0.001754 0.001818 0.006083 0.002450 0.011715 0.002154 0.983680 0.002638 0.001114 0.938678 0.057569 0.002016 0.911319 0.003818 0.082847 0.740177 0.001090 0.002005 0.256728 0.905415 0.001757 0.014660 0.078168 0.987356 0.003190 0.001846 0.007608 0.016362 0.004807 0.016312 0.962520 0.153576 0.155400 0.290074 0.400950 0.455331 0.242511 0.111337 0.190822 0.293425 0.163528 0.350203 0.192844 0.411723 0.243796 0.182398 0.162083 Consensus sequence: BHDTATGCAAATBHDV Reverse complement motif 0.162083 0.243796 0.182398 0.411723 0.293425 0.350203 0.163528 0.192844 0.190822 0.242511 0.111337 0.455331 0.400950 0.155400 0.290074 0.153576 0.962520 0.004807 0.016312 0.016362 0.007608 0.003190 0.001846 0.987356 0.078168 0.001757 0.014660 0.905415 0.256728 0.001090 0.002005 0.740177 0.002016 0.003818 0.911319 0.082847 0.002638 0.938678 0.001114 0.057569 0.983680 0.011715 0.002154 0.002450 0.006083 0.001754 0.001818 0.990346 0.753030 0.119462 0.037157 0.090352 0.185934 0.398787 0.134662 0.280618 0.386210 0.217834 0.151102 0.244854 0.440385 0.199410 0.196283 0.163923 Consensus sequence: BHHVATTTGCATAHHV Alignment: BHDTATGCAAATBHDV AWTTATGAAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00191 Pou2f2 Original Motif Reverse Complement Backward 1 10 0.020050 Species: Mus musculus Original motif 0.143441 0.268530 0.212213 0.375817 0.267386 0.204043 0.174256 0.354316 0.230583 0.148604 0.348518 0.272295 0.127633 0.095216 0.030997 0.746154 0.987721 0.002410 0.003474 0.006395 0.003588 0.019280 0.002951 0.974182 0.005844 0.003199 0.919428 0.071529 0.004446 0.890754 0.005987 0.098813 0.743311 0.001562 0.003671 0.251456 0.893912 0.003008 0.014228 0.088852 0.982166 0.003049 0.002708 0.012076 0.027054 0.005668 0.023977 0.943301 0.197736 0.122428 0.271727 0.408108 0.496910 0.196661 0.105572 0.200857 0.347287 0.129915 0.369062 0.153737 0.409641 0.236160 0.215425 0.138774 Consensus sequence: BHDTATGCAAATDHDV Reverse complement motif 0.138774 0.236160 0.215425 0.409641 0.347287 0.369062 0.129915 0.153737 0.200857 0.196661 0.105572 0.496910 0.408108 0.122428 0.271727 0.197736 0.943301 0.005668 0.023977 0.027054 0.012076 0.003049 0.002708 0.982166 0.088852 0.003008 0.014228 0.893912 0.251456 0.001562 0.003671 0.743311 0.004446 0.005987 0.890754 0.098813 0.005844 0.919428 0.003199 0.071529 0.974182 0.019280 0.002951 0.003588 0.006395 0.002410 0.003474 0.987721 0.746154 0.095216 0.030997 0.127633 0.230583 0.348518 0.148604 0.272295 0.354316 0.204043 0.174256 0.267386 0.375817 0.268530 0.212213 0.143441 Consensus sequence: BHHDATTTGCATAHHV Alignment: BHDTATGCAAATDHDV ------TTTCATAAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00130 Lhx3 Original Motif Reverse Complement Backward 4 10 0.020314 Species: Mus musculus Original motif 0.226746 0.289244 0.371785 0.112225 0.256971 0.229670 0.248726 0.264633 0.556784 0.228344 0.038490 0.176382 0.631659 0.088282 0.196624 0.083434 0.021306 0.098213 0.006109 0.874373 0.016974 0.029949 0.000343 0.952734 0.971885 0.004194 0.023228 0.000693 0.983076 0.001653 0.004793 0.010478 0.010478 0.004793 0.001653 0.983076 0.000693 0.023228 0.004194 0.971885 0.952734 0.000343 0.029949 0.016974 0.874373 0.006109 0.098213 0.021306 0.425814 0.086548 0.127397 0.360241 0.343977 0.034349 0.079320 0.542354 0.412597 0.281154 0.077380 0.228869 0.338396 0.315969 0.106509 0.239127 0.112285 0.233324 0.310745 0.343646 Consensus sequence: VDAATTAATTAAWWHHB Reverse complement motif 0.343646 0.233324 0.310745 0.112285 0.239127 0.315969 0.106509 0.338396 0.228869 0.281154 0.077380 0.412597 0.542354 0.034349 0.079320 0.343977 0.360241 0.086548 0.127397 0.425814 0.021306 0.006109 0.098213 0.874373 0.016974 0.000343 0.029949 0.952734 0.971885 0.023228 0.004194 0.000693 0.983076 0.004793 0.001653 0.010478 0.010478 0.001653 0.004793 0.983076 0.000693 0.004194 0.023228 0.971885 0.952734 0.029949 0.000343 0.016974 0.874373 0.098213 0.006109 0.021306 0.083434 0.088282 0.196624 0.631659 0.176382 0.228344 0.038490 0.556784 0.264633 0.229670 0.248726 0.256971 0.226746 0.371785 0.289244 0.112225 Consensus sequence: VHHWWTTAATTAATTDV Alignment: VHHWWTTAATTAATTDV ----TTTCATAAWT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 11 Motif name: Motif 11 Original motif 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.500000 0.000000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: ATTTWATGAAA Reserve complement motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.500000 0.000000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: TTTCATWAAAT ************************************************************************ Best Matches for Motif ID 11 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00130 Lhx3 Reverse Complement Reverse Complement Forward 5 11 0.023592 Species: Mus musculus Original motif 0.226746 0.289244 0.371785 0.112225 0.256971 0.229670 0.248726 0.264633 0.556784 0.228344 0.038490 0.176382 0.631659 0.088282 0.196624 0.083434 0.021306 0.098213 0.006109 0.874373 0.016974 0.029949 0.000343 0.952734 0.971885 0.004194 0.023228 0.000693 0.983076 0.001653 0.004793 0.010478 0.010478 0.004793 0.001653 0.983076 0.000693 0.023228 0.004194 0.971885 0.952734 0.000343 0.029949 0.016974 0.874373 0.006109 0.098213 0.021306 0.425814 0.086548 0.127397 0.360241 0.343977 0.034349 0.079320 0.542354 0.412597 0.281154 0.077380 0.228869 0.338396 0.315969 0.106509 0.239127 0.112285 0.233324 0.310745 0.343646 Consensus sequence: VDAATTAATTAAWWHHB Reverse complement motif 0.343646 0.233324 0.310745 0.112285 0.239127 0.315969 0.106509 0.338396 0.228869 0.281154 0.077380 0.412597 0.542354 0.034349 0.079320 0.343977 0.360241 0.086548 0.127397 0.425814 0.021306 0.006109 0.098213 0.874373 0.016974 0.000343 0.029949 0.952734 0.971885 0.023228 0.004194 0.000693 0.983076 0.004793 0.001653 0.010478 0.010478 0.001653 0.004793 0.983076 0.000693 0.004194 0.023228 0.971885 0.952734 0.029949 0.000343 0.016974 0.874373 0.098213 0.006109 0.021306 0.083434 0.088282 0.196624 0.631659 0.176382 0.228344 0.038490 0.556784 0.264633 0.229670 0.248726 0.256971 0.226746 0.371785 0.289244 0.112225 Consensus sequence: VHHWWTTAATTAATTDV Alignment: VHHWWTTAATTAATTDV ----TTTCATWAAAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00212 Lhx5 Original Motif Reverse Complement Backward 4 11 0.023858 Species: Mus musculus Original motif 0.192127 0.348816 0.300474 0.158583 0.251871 0.201197 0.314740 0.232192 0.469240 0.195840 0.137749 0.197171 0.620351 0.063061 0.196615 0.119973 0.026357 0.096838 0.024928 0.851877 0.010301 0.066114 0.000301 0.923283 0.980649 0.007663 0.010886 0.000802 0.981397 0.001294 0.004654 0.012655 0.012655 0.004654 0.001294 0.981397 0.000802 0.010886 0.007663 0.980649 0.923283 0.000301 0.066114 0.010301 0.851877 0.024928 0.096838 0.026357 0.528438 0.142302 0.071537 0.257724 0.296647 0.115284 0.062688 0.525382 0.401193 0.235971 0.157675 0.205160 0.309966 0.315367 0.145959 0.228708 0.089761 0.287439 0.205359 0.417441 Consensus sequence: VDHATTAATTAAAWHHB Reverse complement motif 0.417441 0.287439 0.205359 0.089761 0.309966 0.145959 0.315367 0.228708 0.205160 0.235971 0.157675 0.401193 0.525382 0.115284 0.062688 0.296647 0.257724 0.142302 0.071537 0.528438 0.026357 0.024928 0.096838 0.851877 0.010301 0.000301 0.066114 0.923283 0.980649 0.010886 0.007663 0.000802 0.981397 0.004654 0.001294 0.012655 0.012655 0.001294 0.004654 0.981397 0.000802 0.007663 0.010886 0.980649 0.923283 0.066114 0.000301 0.010301 0.851877 0.096838 0.024928 0.026357 0.119973 0.063061 0.196615 0.620351 0.197171 0.195840 0.137749 0.469240 0.251871 0.314740 0.201197 0.232192 0.192127 0.300474 0.348816 0.158583 Consensus sequence: VDHWTTTAATTAATHHV Alignment: VDHWTTTAATTAATHHV ---ATTTWATGAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00173 Hoxc13 Reverse Complement Original Motif Forward 4 11 0.024458 Species: Mus musculus Original motif 0.329750 0.218875 0.126085 0.325290 0.359529 0.208886 0.161839 0.269746 0.422361 0.147886 0.154953 0.274800 0.109858 0.231755 0.365475 0.292912 0.026731 0.838331 0.133884 0.001054 0.001860 0.034063 0.001665 0.962411 0.018979 0.887508 0.000421 0.093092 0.394654 0.000419 0.598992 0.005935 0.001269 0.017200 0.000611 0.980919 0.897441 0.000397 0.003712 0.098450 0.958993 0.000593 0.000873 0.039541 0.981006 0.004963 0.001000 0.013032 0.645464 0.081310 0.051136 0.222090 0.298300 0.138406 0.094463 0.468832 0.158954 0.229153 0.156589 0.455305 0.325279 0.092193 0.241621 0.340907 Consensus sequence: HHDBCTCRTAAAAWHD Reverse complement motif 0.340907 0.092193 0.241621 0.325279 0.455305 0.229153 0.156589 0.158954 0.468832 0.138406 0.094463 0.298300 0.222090 0.081310 0.051136 0.645464 0.013032 0.004963 0.001000 0.981006 0.039541 0.000593 0.000873 0.958993 0.098450 0.000397 0.003712 0.897441 0.980919 0.017200 0.000611 0.001269 0.394654 0.598992 0.000419 0.005935 0.018979 0.000421 0.887508 0.093092 0.962411 0.034063 0.001665 0.001860 0.026731 0.133884 0.838331 0.001054 0.109858 0.365475 0.231755 0.292912 0.274800 0.147886 0.154953 0.422361 0.269746 0.208886 0.161839 0.359529 0.325290 0.218875 0.126085 0.329750 Consensus sequence: DHWTTTTAMGAGBDHH Alignment: HHDBCTCRTAAAAWHD ---TTTCATWAAAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00169 Lmx1b Reverse Complement Original Motif Forward 5 11 0.024715 Species: Mus musculus Original motif 0.336931 0.220707 0.306671 0.135692 0.251068 0.126246 0.394767 0.227919 0.318914 0.086872 0.150663 0.443551 0.368649 0.051170 0.092361 0.487819 0.359682 0.088506 0.064771 0.487041 0.019535 0.162692 0.015925 0.801848 0.015902 0.024224 0.000652 0.959222 0.974698 0.006086 0.002334 0.016882 0.978085 0.001281 0.005421 0.015214 0.015214 0.005421 0.001281 0.978085 0.016882 0.002334 0.006086 0.974698 0.959222 0.000652 0.024224 0.015902 0.801848 0.015925 0.162692 0.019535 0.242323 0.115688 0.116364 0.525625 0.283782 0.097563 0.188384 0.430271 0.252386 0.255982 0.135946 0.355686 0.141430 0.249462 0.350759 0.258349 Consensus sequence: VDWWWTTAATTAATDHB Reverse complement motif 0.141430 0.350759 0.249462 0.258349 0.355686 0.255982 0.135946 0.252386 0.430271 0.097563 0.188384 0.283782 0.525625 0.115688 0.116364 0.242323 0.019535 0.015925 0.162692 0.801848 0.015902 0.000652 0.024224 0.959222 0.974698 0.002334 0.006086 0.016882 0.978085 0.005421 0.001281 0.015214 0.015214 0.001281 0.005421 0.978085 0.016882 0.006086 0.002334 0.974698 0.959222 0.024224 0.000652 0.015902 0.801848 0.162692 0.015925 0.019535 0.487041 0.088506 0.064771 0.359682 0.487819 0.051170 0.092361 0.368649 0.443551 0.086872 0.150663 0.318914 0.251068 0.394767 0.126246 0.227919 0.135692 0.220707 0.306671 0.336931 Consensus sequence: BHDATTAATTAAWWWHB Alignment: VDWWWTTAATTAATDHB ----TTTCATWAAAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00188 Lmx1a Original Motif Original Motif Backward 5 11 0.025054 Species: Mus musculus Original motif 0.163027 0.506393 0.246327 0.084254 0.173471 0.211164 0.477036 0.138330 0.431859 0.182416 0.155298 0.230427 0.420560 0.127574 0.126915 0.324951 0.060842 0.128686 0.037075 0.773398 0.032236 0.035967 0.001358 0.930439 0.938541 0.008352 0.007051 0.046057 0.964464 0.001596 0.003362 0.030579 0.030579 0.003362 0.001596 0.964464 0.046057 0.007051 0.008352 0.938541 0.930439 0.001358 0.035967 0.032236 0.773398 0.037075 0.128686 0.060842 0.498149 0.057242 0.091924 0.352686 0.520755 0.121277 0.054120 0.303848 0.483290 0.175070 0.069683 0.271957 0.221557 0.366894 0.153619 0.257930 0.167920 0.342643 0.169856 0.319581 Consensus sequence: CVHHTTAATTAAWWWHB Reverse complement motif 0.167920 0.169856 0.342643 0.319581 0.221557 0.153619 0.366894 0.257930 0.271957 0.175070 0.069683 0.483290 0.303848 0.121277 0.054120 0.520755 0.352686 0.057242 0.091924 0.498149 0.060842 0.037075 0.128686 0.773398 0.032236 0.001358 0.035967 0.930439 0.938541 0.007051 0.008352 0.046057 0.964464 0.003362 0.001596 0.030579 0.030579 0.001596 0.003362 0.964464 0.046057 0.008352 0.007051 0.938541 0.930439 0.035967 0.001358 0.032236 0.773398 0.128686 0.037075 0.060842 0.324951 0.127574 0.126915 0.420560 0.230427 0.182416 0.155298 0.431859 0.173471 0.477036 0.211164 0.138330 0.163027 0.246327 0.506393 0.084254 Consensus sequence: BDWWWTTAATTAAHHVG Alignment: CVHHTTAATTAAWWWHB --ATTTWATGAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 12 Motif name: Motif 12 Original motif 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: AAAACAAA Reserve complement motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: TTTGTTTT ************************************************************************ Best Matches for Motif ID 12 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Original Motif Original Motif Forward 4 8 0.000000 Species: Mus musculus Original motif 0.427843 0.231210 0.119424 0.221523 0.196506 0.239531 0.304906 0.259057 0.302488 0.156922 0.290190 0.250401 0.433872 0.149126 0.196496 0.220506 0.258426 0.076511 0.475100 0.189963 0.841714 0.046453 0.099915 0.011918 0.983853 0.001612 0.001362 0.013174 0.003460 0.982032 0.005728 0.008780 0.989743 0.002253 0.002020 0.005984 0.990761 0.003397 0.002843 0.003000 0.770864 0.003540 0.001549 0.224048 0.235342 0.002598 0.757383 0.004677 0.371426 0.089574 0.529959 0.009040 0.480804 0.196949 0.240413 0.081833 0.187158 0.355102 0.216599 0.241142 0.248006 0.232182 0.157452 0.362360 0.403367 0.177684 0.164649 0.254300 Consensus sequence: HBDDDAACAAAGRVBHH Reverse complement motif 0.254300 0.177684 0.164649 0.403367 0.362360 0.232182 0.157452 0.248006 0.187158 0.216599 0.355102 0.241142 0.081833 0.196949 0.240413 0.480804 0.371426 0.529959 0.089574 0.009040 0.235342 0.757383 0.002598 0.004677 0.224048 0.003540 0.001549 0.770864 0.003000 0.003397 0.002843 0.990761 0.005984 0.002253 0.002020 0.989743 0.003460 0.005728 0.982032 0.008780 0.013174 0.001612 0.001362 0.983853 0.011918 0.046453 0.099915 0.841714 0.258426 0.475100 0.076511 0.189963 0.220506 0.149126 0.196496 0.433872 0.250401 0.156922 0.290190 0.302488 0.196506 0.304906 0.239531 0.259057 0.221523 0.231210 0.119424 0.427843 Consensus sequence: HHBBMCTTTGTTHDDBH Alignment: HBDDDAACAAAGRVBHH ---AAAACAAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Original Motif Original Motif Backward 7 8 0.000283 Species: Mus musculus Original motif 0.351812 0.238467 0.143954 0.265768 0.195246 0.235838 0.281473 0.287443 0.349478 0.172616 0.210739 0.267167 0.484061 0.110438 0.173131 0.232370 0.276692 0.070713 0.479604 0.172991 0.859124 0.044167 0.083951 0.012758 0.975608 0.002029 0.002285 0.020079 0.006422 0.978485 0.007124 0.007969 0.987489 0.003025 0.002868 0.006617 0.987739 0.005463 0.002730 0.004067 0.693013 0.004067 0.002445 0.300475 0.189100 0.003677 0.801408 0.005814 0.352090 0.072517 0.567737 0.007656 0.542316 0.176545 0.192768 0.088371 0.196382 0.304176 0.205985 0.293457 0.289415 0.201358 0.182937 0.326290 0.385801 0.216362 0.152363 0.245475 Consensus sequence: HBDDRAACAAAGRABHH Reverse complement motif 0.245475 0.216362 0.152363 0.385801 0.326290 0.201358 0.182937 0.289415 0.196382 0.205985 0.304176 0.293457 0.088371 0.176545 0.192768 0.542316 0.352090 0.567737 0.072517 0.007656 0.189100 0.801408 0.003677 0.005814 0.300475 0.004067 0.002445 0.693013 0.004067 0.005463 0.002730 0.987739 0.006617 0.003025 0.002868 0.987489 0.006422 0.007124 0.978485 0.007969 0.020079 0.002029 0.002285 0.975608 0.012758 0.044167 0.083951 0.859124 0.276692 0.479604 0.070713 0.172991 0.232370 0.110438 0.173131 0.484061 0.267167 0.172616 0.210739 0.349478 0.287443 0.235838 0.281473 0.195246 0.265768 0.238467 0.143954 0.351812 Consensus sequence: HHBTMCTTTGTTMDDVH Alignment: HBDDRAACAAAGRABHH ---AAAACAAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_primary Reverse Complement Reverse Complement Forward 4 8 0.003091 Species: Mus musculus Original motif 0.338172 0.192194 0.207817 0.261817 0.407924 0.117261 0.278236 0.196580 0.595570 0.070480 0.119221 0.214729 0.710845 0.038748 0.052600 0.197807 0.124647 0.116138 0.178053 0.581162 0.201602 0.005514 0.792110 0.000774 0.024590 0.004193 0.001331 0.969886 0.919465 0.077871 0.000760 0.001904 0.972342 0.010395 0.000580 0.016683 0.991045 0.001495 0.003585 0.003875 0.001358 0.885197 0.000980 0.112465 0.990318 0.001846 0.002968 0.004867 0.804563 0.063147 0.023496 0.108795 0.564824 0.087976 0.102865 0.244336 0.269947 0.300278 0.285008 0.144767 0.337905 0.220102 0.253694 0.188299 0.153781 0.274135 0.318343 0.253741 Consensus sequence: DDAATGTAAACAAAVVB Reverse complement motif 0.153781 0.318343 0.274135 0.253741 0.188299 0.220102 0.253694 0.337905 0.269947 0.285008 0.300278 0.144767 0.244336 0.087976 0.102865 0.564824 0.108795 0.063147 0.023496 0.804563 0.004867 0.001846 0.002968 0.990318 0.001358 0.000980 0.885197 0.112465 0.003875 0.001495 0.003585 0.991045 0.016683 0.010395 0.000580 0.972342 0.001904 0.077871 0.000760 0.919465 0.969886 0.004193 0.001331 0.024590 0.201602 0.792110 0.005514 0.000774 0.581162 0.116138 0.178053 0.124647 0.197807 0.038748 0.052600 0.710845 0.214729 0.070480 0.119221 0.595570 0.196580 0.117261 0.278236 0.407924 0.261817 0.192194 0.207817 0.338172 Consensus sequence: BBVTTTGTTTACATTDD Alignment: BBVTTTGTTTACATTDD ---TTTGTTTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_primary Reverse Complement Reverse Complement Forward 4 8 0.006205 Species: Mus musculus Original motif 0.323208 0.152915 0.185111 0.338766 0.428132 0.056109 0.099487 0.416272 0.659386 0.039965 0.035805 0.264843 0.647143 0.049206 0.078984 0.224667 0.208834 0.076592 0.071631 0.642943 0.341077 0.003865 0.649511 0.005547 0.016627 0.001866 0.001715 0.979792 0.952319 0.045294 0.000870 0.001516 0.988834 0.004620 0.000720 0.005826 0.989346 0.001005 0.006467 0.003182 0.001093 0.784230 0.001235 0.213442 0.991209 0.002017 0.001737 0.005037 0.801581 0.037084 0.023060 0.138274 0.528554 0.089350 0.107501 0.274595 0.208802 0.268646 0.368022 0.154530 0.280218 0.221367 0.340497 0.157918 0.146611 0.250725 0.293524 0.309140 Consensus sequence: DWAATRTAAACAAWVVB Reverse complement motif 0.309140 0.250725 0.293524 0.146611 0.280218 0.340497 0.221367 0.157918 0.208802 0.368022 0.268646 0.154530 0.274595 0.089350 0.107501 0.528554 0.138274 0.037084 0.023060 0.801581 0.005037 0.002017 0.001737 0.991209 0.001093 0.001235 0.784230 0.213442 0.003182 0.001005 0.006467 0.989346 0.005826 0.004620 0.000720 0.988834 0.001516 0.045294 0.000870 0.952319 0.979792 0.001866 0.001715 0.016627 0.341077 0.649511 0.003865 0.005547 0.642943 0.076592 0.071631 0.208834 0.224667 0.049206 0.078984 0.647143 0.264843 0.039965 0.035805 0.659386 0.416272 0.056109 0.099487 0.428132 0.338766 0.152915 0.185111 0.323208 Consensus sequence: VVVWTTGTTTAMATTWD Alignment: VVVWTTGTTTAMATTWD ---TTTGTTTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_primary Reverse Complement Reverse Complement Forward 4 8 0.006807 Species: Mus musculus Original motif 0.273456 0.257473 0.208488 0.260583 0.338566 0.133379 0.306363 0.221693 0.475488 0.192852 0.156858 0.174803 0.506619 0.132646 0.170373 0.190362 0.349042 0.127275 0.325924 0.197759 0.303850 0.013619 0.678034 0.004497 0.014136 0.015691 0.003073 0.967100 0.913373 0.082928 0.001910 0.001789 0.956294 0.017745 0.000584 0.025378 0.987796 0.001685 0.004159 0.006360 0.002288 0.814764 0.001427 0.181521 0.986707 0.002688 0.003346 0.007259 0.787378 0.065481 0.057961 0.089180 0.572982 0.089910 0.066184 0.270924 0.224167 0.339979 0.258886 0.176968 0.268414 0.272007 0.239541 0.220038 0.241771 0.394748 0.174273 0.189208 Consensus sequence: HDHADGTAAACAAAVVH Reverse complement motif 0.241771 0.174273 0.394748 0.189208 0.268414 0.239541 0.272007 0.220038 0.224167 0.258886 0.339979 0.176968 0.270924 0.089910 0.066184 0.572982 0.089180 0.065481 0.057961 0.787378 0.007259 0.002688 0.003346 0.986707 0.002288 0.001427 0.814764 0.181521 0.006360 0.001685 0.004159 0.987796 0.025378 0.017745 0.000584 0.956294 0.001789 0.082928 0.001910 0.913373 0.967100 0.015691 0.003073 0.014136 0.303850 0.678034 0.013619 0.004497 0.197759 0.127275 0.325924 0.349042 0.190362 0.132646 0.170373 0.506619 0.174803 0.192852 0.156858 0.475488 0.221693 0.133379 0.306363 0.338566 0.260583 0.257473 0.208488 0.273456 Consensus sequence: DVVTTTGTTTACDTHDH Alignment: DVVTTTGTTTACDTHDH ---TTTGTTTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 13 Motif name: Motif 13 Original motif 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: AAAGATTT Reserve complement motif 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: AAATCTTT ************************************************************************ Best Matches for Motif ID 13 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00114 Homez Reverse Complement Original Motif Forward 4 8 0.003276 Species: Mus musculus Original motif 0.585235 0.056880 0.174898 0.182987 0.344783 0.171238 0.144379 0.339600 0.496888 0.112442 0.086669 0.304001 0.457408 0.134777 0.032789 0.375026 0.342717 0.420568 0.171418 0.065297 0.872988 0.030946 0.004203 0.091862 0.006581 0.013120 0.006495 0.973804 0.036193 0.946961 0.004377 0.012469 0.014767 0.005226 0.966106 0.013901 0.208700 0.008264 0.021875 0.761161 0.037957 0.018882 0.028895 0.914266 0.157997 0.026546 0.021365 0.794092 0.139814 0.136272 0.117987 0.605927 0.125467 0.233302 0.183071 0.458161 0.523941 0.191122 0.050126 0.234811 0.374984 0.049392 0.291831 0.283793 0.268235 0.165772 0.308515 0.257477 Consensus sequence: AHWWMATCGTTTTBADD Reverse complement motif 0.268235 0.308515 0.165772 0.257477 0.283793 0.049392 0.291831 0.374984 0.234811 0.191122 0.050126 0.523941 0.458161 0.233302 0.183071 0.125467 0.605927 0.136272 0.117987 0.139814 0.794092 0.026546 0.021365 0.157997 0.914266 0.018882 0.028895 0.037957 0.761161 0.008264 0.021875 0.208700 0.014767 0.966106 0.005226 0.013901 0.036193 0.004377 0.946961 0.012469 0.973804 0.013120 0.006495 0.006581 0.091862 0.030946 0.004203 0.872988 0.342717 0.171418 0.420568 0.065297 0.375026 0.134777 0.032789 0.457408 0.304001 0.112442 0.086669 0.496888 0.339600 0.171238 0.144379 0.344783 0.182987 0.056880 0.174898 0.585235 Consensus sequence: HDTVAAAACGATRWWHT Alignment: AHWWMATCGTTTTBADD ---AAATCTTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00148 Hdx Reverse Complement Original Motif Backward 4 8 0.010757 Species: Mus musculus Original motif 0.311640 0.203273 0.213311 0.271776 0.341055 0.177799 0.257310 0.223836 0.047573 0.089551 0.516163 0.346713 0.195776 0.119326 0.352322 0.332576 0.295379 0.306027 0.157574 0.241020 0.213770 0.018770 0.724927 0.042533 0.702123 0.228608 0.050137 0.019133 0.826735 0.011735 0.061646 0.099884 0.920071 0.005458 0.026253 0.048218 0.018655 0.024240 0.028915 0.928190 0.029929 0.896758 0.043300 0.030013 0.864548 0.044943 0.013744 0.076766 0.177175 0.216931 0.155519 0.450375 0.228403 0.325164 0.203649 0.242785 0.140135 0.298665 0.306153 0.255047 0.338324 0.345500 0.057864 0.258313 0.402538 0.228867 0.191777 0.176818 Consensus sequence: DDKDHGAAATCAHHBHV Reverse complement motif 0.176818 0.228867 0.191777 0.402538 0.338324 0.057864 0.345500 0.258313 0.140135 0.306153 0.298665 0.255047 0.228403 0.203649 0.325164 0.242785 0.450375 0.216931 0.155519 0.177175 0.076766 0.044943 0.013744 0.864548 0.029929 0.043300 0.896758 0.030013 0.928190 0.024240 0.028915 0.018655 0.048218 0.005458 0.026253 0.920071 0.099884 0.011735 0.061646 0.826735 0.019133 0.228608 0.050137 0.702123 0.213770 0.724927 0.018770 0.042533 0.295379 0.157574 0.306027 0.241020 0.195776 0.352322 0.119326 0.332576 0.047573 0.516163 0.089551 0.346713 0.223836 0.177799 0.257310 0.341055 0.271776 0.203273 0.213311 0.311640 Consensus sequence: BDBDHTGATTTCDHYDD Alignment: DDKDHGAAATCAHHBHV ------AAATCTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00080 Gata5_secondary Original Motif Original Motif Backward 7 8 0.011973 Species: Mus musculus Original motif 0.296956 0.225759 0.366964 0.110320 0.363955 0.287909 0.178199 0.169937 0.167366 0.353513 0.235266 0.243855 0.362045 0.255289 0.159993 0.222674 0.280070 0.083717 0.491243 0.144971 0.856104 0.068327 0.034504 0.041065 0.063256 0.017187 0.849623 0.069934 0.916053 0.035900 0.039485 0.008562 0.025896 0.011964 0.054314 0.907826 0.827706 0.129092 0.013351 0.029850 0.048301 0.029514 0.118868 0.803318 0.069245 0.824881 0.022797 0.083077 0.508319 0.034384 0.109239 0.348058 0.228736 0.146771 0.436716 0.187777 0.183599 0.289339 0.157455 0.369607 0.174967 0.268426 0.275078 0.281528 0.136843 0.155950 0.346111 0.361096 Consensus sequence: VVBHRAGATATCWDHBB Reverse complement motif 0.361096 0.155950 0.346111 0.136843 0.281528 0.268426 0.275078 0.174967 0.369607 0.289339 0.157455 0.183599 0.228736 0.436716 0.146771 0.187777 0.348058 0.034384 0.109239 0.508319 0.069245 0.022797 0.824881 0.083077 0.803318 0.029514 0.118868 0.048301 0.029850 0.129092 0.013351 0.827706 0.907826 0.011964 0.054314 0.025896 0.008562 0.035900 0.039485 0.916053 0.063256 0.849623 0.017187 0.069934 0.041065 0.068327 0.034504 0.856104 0.280070 0.491243 0.083717 0.144971 0.222674 0.255289 0.159993 0.362045 0.167366 0.235266 0.353513 0.243855 0.169937 0.287909 0.178199 0.363955 0.296956 0.366964 0.225759 0.110320 Consensus sequence: VVHHWGATATCTMHBBV Alignment: VVBHRAGATATCWDHBB ---AAAGATTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00059 Arid5a_primary Original Motif Reverse Complement Backward 2 8 0.014072 Species: Mus musculus Original motif 0.177323 0.428313 0.229036 0.165328 0.160222 0.324571 0.032445 0.482762 0.852203 0.026733 0.073955 0.047109 0.961249 0.003798 0.010118 0.024835 0.056540 0.004008 0.007877 0.931575 0.930331 0.005138 0.007138 0.057393 0.019951 0.014189 0.006789 0.959072 0.041132 0.087506 0.039025 0.832338 0.233919 0.027935 0.519605 0.218541 0.339577 0.352988 0.184316 0.123119 0.285389 0.134719 0.268289 0.311602 0.572143 0.078418 0.190434 0.159005 0.285669 0.184068 0.262199 0.268064 0.342799 0.230460 0.153946 0.272795 Consensus sequence: VYAATATTGVDADH Reverse complement motif 0.272795 0.230460 0.153946 0.342799 0.268064 0.184068 0.262199 0.285669 0.159005 0.078418 0.190434 0.572143 0.311602 0.134719 0.268289 0.285389 0.339577 0.184316 0.352988 0.123119 0.233919 0.519605 0.027935 0.218541 0.832338 0.087506 0.039025 0.041132 0.959072 0.014189 0.006789 0.019951 0.057393 0.005138 0.007138 0.930331 0.931575 0.004008 0.007877 0.056540 0.024835 0.003798 0.010118 0.961249 0.047109 0.026733 0.073955 0.852203 0.482762 0.324571 0.032445 0.160222 0.177323 0.229036 0.428313 0.165328 Consensus sequence: HDTDVCAATATTMV Alignment: HDTDVCAATATTMV -----AAAGATTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Original Motif Reverse Complement Forward 9 8 0.015154 Species: Mus musculus Original motif 0.281920 0.214207 0.278077 0.225796 0.325566 0.151435 0.298797 0.224202 0.290253 0.145824 0.243443 0.320480 0.069286 0.404645 0.141614 0.384454 0.070044 0.621448 0.142647 0.165862 0.007295 0.907657 0.038110 0.046938 0.015587 0.018273 0.000658 0.965482 0.005527 0.005886 0.001905 0.986682 0.024512 0.001189 0.001344 0.972955 0.007384 0.025221 0.952270 0.015125 0.966438 0.000630 0.002693 0.030239 0.082252 0.001173 0.001495 0.915080 0.030255 0.677155 0.275323 0.017267 0.199467 0.118815 0.056814 0.624905 0.345445 0.169597 0.216831 0.268127 0.278106 0.150864 0.173693 0.397336 0.251834 0.339733 0.219703 0.188730 Consensus sequence: DDDYCCTTTGATCTDDV Reverse complement motif 0.251834 0.219703 0.339733 0.188730 0.397336 0.150864 0.173693 0.278106 0.268127 0.169597 0.216831 0.345445 0.624905 0.118815 0.056814 0.199467 0.030255 0.275323 0.677155 0.017267 0.915080 0.001173 0.001495 0.082252 0.030239 0.000630 0.002693 0.966438 0.007384 0.952270 0.025221 0.015125 0.972955 0.001189 0.001344 0.024512 0.986682 0.005886 0.001905 0.005527 0.965482 0.018273 0.000658 0.015587 0.007295 0.038110 0.907657 0.046938 0.070044 0.142647 0.621448 0.165862 0.069286 0.141614 0.404645 0.384454 0.320480 0.145824 0.243443 0.290253 0.224202 0.151435 0.298797 0.325566 0.225796 0.214207 0.278077 0.281920 Consensus sequence: VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD --------AAAGATTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 14 Motif name: Motif 14 Original motif 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: AWAAATAA Reserve complement motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: TTATTTWT ************************************************************************ Best Matches for Motif ID 14 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Reverse Complement Reverse Complement Backward 6 8 0.005065 Species: Mus musculus Original motif 0.151572 0.262753 0.258275 0.327401 0.221834 0.113385 0.275380 0.389400 0.297769 0.136928 0.134678 0.430625 0.270099 0.110415 0.271106 0.348380 0.265471 0.090253 0.223340 0.420936 0.616582 0.090091 0.171960 0.121367 0.197318 0.107541 0.406904 0.288237 0.798258 0.046950 0.001406 0.153385 0.003195 0.002516 0.989707 0.004582 0.991503 0.002748 0.002617 0.003132 0.005015 0.002764 0.003026 0.989195 0.948394 0.008932 0.001344 0.041330 0.973109 0.004100 0.004081 0.018710 0.040365 0.113905 0.828185 0.017545 0.736608 0.130524 0.113464 0.019404 0.415921 0.106101 0.316613 0.161365 0.376582 0.170927 0.155572 0.296919 0.137731 0.197151 0.211055 0.454064 0.324853 0.122747 0.246107 0.306293 0.462490 0.207311 0.159392 0.170807 0.380420 0.188972 0.311990 0.118618 0.222178 0.157873 0.380486 0.239463 Consensus sequence: BDHDDADAGATAAGADHBDHVD Reverse complement motif 0.222178 0.380486 0.157873 0.239463 0.118618 0.188972 0.311990 0.380420 0.170807 0.207311 0.159392 0.462490 0.306293 0.122747 0.246107 0.324853 0.454064 0.197151 0.211055 0.137731 0.296919 0.170927 0.155572 0.376582 0.161365 0.106101 0.316613 0.415921 0.019404 0.130524 0.113464 0.736608 0.040365 0.828185 0.113905 0.017545 0.018710 0.004100 0.004081 0.973109 0.041330 0.008932 0.001344 0.948394 0.989195 0.002764 0.003026 0.005015 0.003132 0.002748 0.002617 0.991503 0.003195 0.989707 0.002516 0.004582 0.153385 0.046950 0.001406 0.798258 0.197318 0.406904 0.107541 0.288237 0.121367 0.090091 0.171960 0.616582 0.420936 0.090253 0.223340 0.265471 0.348380 0.110415 0.271106 0.270099 0.430625 0.136928 0.134678 0.297769 0.389400 0.113385 0.275380 0.221834 0.327401 0.262753 0.258275 0.151572 Consensus sequence: HBHDVHDTCTTATCTHTDDHDV Alignment: HBHDVHDTCTTATCTHTDDHDV ---------TTATTTWT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_primary Original Motif Original Motif Backward 5 8 0.005463 Species: Mus musculus Original motif 0.323208 0.152915 0.185111 0.338766 0.428132 0.056109 0.099487 0.416272 0.659386 0.039965 0.035805 0.264843 0.647143 0.049206 0.078984 0.224667 0.208834 0.076592 0.071631 0.642943 0.341077 0.003865 0.649511 0.005547 0.016627 0.001866 0.001715 0.979792 0.952319 0.045294 0.000870 0.001516 0.988834 0.004620 0.000720 0.005826 0.989346 0.001005 0.006467 0.003182 0.001093 0.784230 0.001235 0.213442 0.991209 0.002017 0.001737 0.005037 0.801581 0.037084 0.023060 0.138274 0.528554 0.089350 0.107501 0.274595 0.208802 0.268646 0.368022 0.154530 0.280218 0.221367 0.340497 0.157918 0.146611 0.250725 0.293524 0.309140 Consensus sequence: DWAATRTAAACAAWVVB Reverse complement motif 0.309140 0.250725 0.293524 0.146611 0.280218 0.340497 0.221367 0.157918 0.208802 0.368022 0.268646 0.154530 0.274595 0.089350 0.107501 0.528554 0.138274 0.037084 0.023060 0.801581 0.005037 0.002017 0.001737 0.991209 0.001093 0.001235 0.784230 0.213442 0.003182 0.001005 0.006467 0.989346 0.005826 0.004620 0.000720 0.988834 0.001516 0.045294 0.000870 0.952319 0.979792 0.001866 0.001715 0.016627 0.341077 0.649511 0.003865 0.005547 0.642943 0.076592 0.071631 0.208834 0.224667 0.049206 0.078984 0.647143 0.264843 0.039965 0.035805 0.659386 0.416272 0.056109 0.099487 0.428132 0.338766 0.152915 0.185111 0.323208 Consensus sequence: VVVWTTGTTTAMATTWD Alignment: DWAATRTAAACAAWVVB -----AWAAATAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00118 Pou4f3 Reverse Complement Reverse Complement Backward 5 8 0.008322 Species: Mus musculus Original motif 0.383079 0.200564 0.157774 0.258582 0.286661 0.232328 0.346094 0.134917 0.183287 0.074980 0.188685 0.553047 0.245056 0.223547 0.014679 0.516718 0.928782 0.007660 0.014149 0.049409 0.008881 0.020425 0.001142 0.969552 0.020532 0.000614 0.002803 0.976051 0.968278 0.003691 0.001780 0.026252 0.986910 0.001908 0.004534 0.006648 0.006532 0.009241 0.001632 0.982594 0.062388 0.006200 0.562032 0.369379 0.937585 0.034112 0.009775 0.018527 0.305324 0.123407 0.348899 0.222371 0.075111 0.110371 0.496285 0.318233 0.221869 0.271240 0.060549 0.446342 0.190858 0.546784 0.055998 0.206361 Consensus sequence: HVTTATTAATKADKHC Reverse complement motif 0.190858 0.055998 0.546784 0.206361 0.446342 0.271240 0.060549 0.221869 0.075111 0.496285 0.110371 0.318233 0.305324 0.348899 0.123407 0.222371 0.018527 0.034112 0.009775 0.937585 0.062388 0.562032 0.006200 0.369379 0.982594 0.009241 0.001632 0.006532 0.006648 0.001908 0.004534 0.986910 0.026252 0.003691 0.001780 0.968278 0.976051 0.000614 0.002803 0.020532 0.969552 0.020425 0.001142 0.008881 0.049409 0.007660 0.014149 0.928782 0.516718 0.223547 0.014679 0.245056 0.553047 0.074980 0.188685 0.183287 0.286661 0.346094 0.232328 0.134917 0.258582 0.200564 0.157774 0.383079 Consensus sequence: GHYHTYATTAATAAVH Alignment: GHYHTYATTAATAAVH ----TTATTTWT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00037 Zfp105_primary Reverse Complement Reverse Complement Forward 4 8 0.009129 Species: Mus musculus Original motif 0.363104 0.182807 0.145232 0.308856 0.419707 0.133742 0.222546 0.224005 0.164481 0.418263 0.052397 0.364858 0.715575 0.117639 0.064914 0.101872 0.883836 0.026985 0.032584 0.056596 0.558797 0.151280 0.033120 0.256803 0.267037 0.403488 0.026746 0.302729 0.939762 0.013627 0.034579 0.012032 0.897072 0.009878 0.035642 0.057408 0.305904 0.516040 0.055311 0.122746 0.880940 0.027958 0.048350 0.042752 0.710082 0.052464 0.040250 0.197204 0.246712 0.125155 0.318627 0.309506 0.429749 0.181755 0.176892 0.211603 0.339643 0.097216 0.355250 0.207891 Consensus sequence: HDYAAAHAAMAADHD Reverse complement motif 0.339643 0.355250 0.097216 0.207891 0.211603 0.181755 0.176892 0.429749 0.246712 0.318627 0.125155 0.309506 0.197204 0.052464 0.040250 0.710082 0.042752 0.027958 0.048350 0.880940 0.305904 0.055311 0.516040 0.122746 0.057408 0.009878 0.035642 0.897072 0.012032 0.013627 0.034579 0.939762 0.267037 0.026746 0.403488 0.302729 0.256803 0.151280 0.033120 0.558797 0.056596 0.026985 0.032584 0.883836 0.101872 0.117639 0.064914 0.715575 0.164481 0.052397 0.418263 0.364858 0.224005 0.133742 0.222546 0.419707 0.308856 0.182807 0.145232 0.363104 Consensus sequence: HHHTTRTTDTTTKDH Alignment: HHHTTRTTDTTTKDH ---TTATTTWT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_primary Original Motif Original Motif Backward 5 8 0.010568 Species: Mus musculus Original motif 0.273456 0.257473 0.208488 0.260583 0.338566 0.133379 0.306363 0.221693 0.475488 0.192852 0.156858 0.174803 0.506619 0.132646 0.170373 0.190362 0.349042 0.127275 0.325924 0.197759 0.303850 0.013619 0.678034 0.004497 0.014136 0.015691 0.003073 0.967100 0.913373 0.082928 0.001910 0.001789 0.956294 0.017745 0.000584 0.025378 0.987796 0.001685 0.004159 0.006360 0.002288 0.814764 0.001427 0.181521 0.986707 0.002688 0.003346 0.007259 0.787378 0.065481 0.057961 0.089180 0.572982 0.089910 0.066184 0.270924 0.224167 0.339979 0.258886 0.176968 0.268414 0.272007 0.239541 0.220038 0.241771 0.394748 0.174273 0.189208 Consensus sequence: HDHADGTAAACAAAVVH Reverse complement motif 0.241771 0.174273 0.394748 0.189208 0.268414 0.239541 0.272007 0.220038 0.224167 0.258886 0.339979 0.176968 0.270924 0.089910 0.066184 0.572982 0.089180 0.065481 0.057961 0.787378 0.007259 0.002688 0.003346 0.986707 0.002288 0.001427 0.814764 0.181521 0.006360 0.001685 0.004159 0.987796 0.025378 0.017745 0.000584 0.956294 0.001789 0.082928 0.001910 0.913373 0.967100 0.015691 0.003073 0.014136 0.303850 0.678034 0.013619 0.004497 0.197759 0.127275 0.325924 0.349042 0.190362 0.132646 0.170373 0.506619 0.174803 0.192852 0.156858 0.475488 0.221693 0.133379 0.306363 0.338566 0.260583 0.257473 0.208488 0.273456 Consensus sequence: DVVTTTGTTTACDTHDH Alignment: HDHADGTAAACAAAVVH -----AWAAATAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 15 Motif name: Motif 15 Original motif 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: ATMACAATAAAA Reserve complement motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: TTTTATTGTYAT ************************************************************************ Best Matches for Motif ID 15 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00180 Hoxd13 Reverse Complement Reverse Complement Backward 1 12 0.008789 Species: Mus musculus Original motif 0.279189 0.316791 0.190404 0.213616 0.297705 0.175638 0.191020 0.335637 0.333485 0.203858 0.174034 0.288623 0.046444 0.540349 0.083237 0.329969 0.016780 0.648667 0.003870 0.330682 0.679959 0.116873 0.002745 0.200422 0.936496 0.002013 0.026876 0.034615 0.004741 0.008734 0.003861 0.982665 0.904624 0.000869 0.005345 0.089162 0.967883 0.002295 0.001003 0.028819 0.980087 0.004768 0.002887 0.012258 0.898523 0.041633 0.022776 0.037069 0.246903 0.292446 0.069240 0.391411 0.192528 0.300908 0.105655 0.400908 0.247610 0.343317 0.190760 0.218313 0.246702 0.253595 0.176298 0.323404 Consensus sequence: HDHYYAATAAAAHHHH Reverse complement motif 0.323404 0.253595 0.176298 0.246702 0.247610 0.190760 0.343317 0.218313 0.400908 0.300908 0.105655 0.192528 0.391411 0.292446 0.069240 0.246903 0.037069 0.041633 0.022776 0.898523 0.012258 0.004768 0.002887 0.980087 0.028819 0.002295 0.001003 0.967883 0.089162 0.000869 0.005345 0.904624 0.982665 0.008734 0.003861 0.004741 0.034615 0.002013 0.026876 0.936496 0.200422 0.116873 0.002745 0.679959 0.016780 0.003870 0.648667 0.330682 0.046444 0.083237 0.540349 0.329969 0.288623 0.203858 0.174034 0.333485 0.335637 0.175638 0.191020 0.297705 0.279189 0.190404 0.316791 0.213616 Consensus sequence: HDHHTTTTATTKKHDD Alignment: HDHHTTTTATTKKHDD ----TTTTATTGTYAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00134 Hoxb13 Original Motif Original Motif Forward 1 12 0.016213 Species: Mus musculus Original motif 0.376100 0.272625 0.202253 0.149021 0.479072 0.116315 0.274952 0.129661 0.297412 0.328646 0.182054 0.191889 0.052067 0.771717 0.088083 0.088133 0.018222 0.666056 0.006952 0.308770 0.755568 0.122362 0.001339 0.120731 0.915413 0.001023 0.052340 0.031225 0.002612 0.028396 0.000695 0.968297 0.831092 0.001851 0.005615 0.161442 0.927869 0.001839 0.001169 0.069123 0.967747 0.009603 0.002871 0.019778 0.843186 0.073812 0.055868 0.027134 0.371084 0.143031 0.086222 0.399662 0.264976 0.212885 0.118960 0.403179 0.215633 0.345186 0.105518 0.333663 0.221910 0.297212 0.329310 0.151568 Consensus sequence: VRHCCAATAAAAWHHV Reverse complement motif 0.221910 0.329310 0.297212 0.151568 0.215633 0.105518 0.345186 0.333663 0.403179 0.212885 0.118960 0.264976 0.399662 0.143031 0.086222 0.371084 0.027134 0.073812 0.055868 0.843186 0.019778 0.009603 0.002871 0.967747 0.069123 0.001839 0.001169 0.927869 0.161442 0.001851 0.005615 0.831092 0.968297 0.028396 0.000695 0.002612 0.031225 0.001023 0.052340 0.915413 0.120731 0.122362 0.001339 0.755568 0.018222 0.006952 0.666056 0.308770 0.052067 0.088083 0.771717 0.088133 0.297412 0.182054 0.328646 0.191889 0.129661 0.116315 0.274952 0.479072 0.149021 0.272625 0.202253 0.376100 Consensus sequence: VDHWTTTTATTGGDKB Alignment: VRHCCAATAAAAWHHV ATMACAATAAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00121 Hoxd10 Original Motif Original Motif Forward 1 12 0.024675 Species: Mus musculus Original motif 0.405345 0.293266 0.220907 0.080482 0.398063 0.099034 0.333525 0.169378 0.049753 0.190411 0.336789 0.423048 0.243698 0.226261 0.324346 0.205696 0.030873 0.549741 0.008321 0.411065 0.714225 0.228092 0.020960 0.036723 0.833992 0.010944 0.021918 0.133146 0.008898 0.026169 0.008341 0.956591 0.811684 0.004889 0.004751 0.178676 0.952107 0.004322 0.004587 0.038984 0.925365 0.008360 0.006811 0.059464 0.850659 0.058250 0.065237 0.025855 0.193369 0.242985 0.049515 0.514131 0.266774 0.080601 0.239781 0.412844 0.335522 0.125500 0.188170 0.350809 0.407171 0.120540 0.187300 0.284989 0.281181 0.242348 0.160247 0.316224 Consensus sequence: VDKVYAATAAAATDDDH Reverse complement motif 0.316224 0.242348 0.160247 0.281181 0.284989 0.120540 0.187300 0.407171 0.350809 0.125500 0.188170 0.335522 0.412844 0.080601 0.239781 0.266774 0.514131 0.242985 0.049515 0.193369 0.025855 0.058250 0.065237 0.850659 0.059464 0.008360 0.006811 0.925365 0.038984 0.004322 0.004587 0.952107 0.178676 0.004889 0.004751 0.811684 0.956591 0.026169 0.008341 0.008898 0.133146 0.010944 0.021918 0.833992 0.036723 0.228092 0.020960 0.714225 0.030873 0.008321 0.549741 0.411065 0.243698 0.324346 0.226261 0.205696 0.423048 0.190411 0.336789 0.049753 0.169378 0.099034 0.333525 0.398063 0.080482 0.293266 0.220907 0.405345 Consensus sequence: HDDDATTTTATTKVRDB Alignment: VDKVYAATAAAATDDDH ATMACAATAAAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00091 Sox5_primary Reverse Complement Reverse Complement Backward 4 12 0.024793 Species: Mus musculus Original motif 0.305368 0.133033 0.173233 0.388366 0.257879 0.197076 0.146872 0.398174 0.257635 0.122462 0.256979 0.362924 0.446808 0.093619 0.289963 0.169610 0.148292 0.091229 0.632311 0.128169 0.827592 0.026174 0.130622 0.015612 0.976345 0.003817 0.005452 0.014386 0.005230 0.937364 0.008904 0.048502 0.973417 0.003014 0.006136 0.017433 0.974095 0.004350 0.011425 0.010130 0.030624 0.011927 0.003795 0.953653 0.491667 0.015453 0.085481 0.407399 0.451773 0.100304 0.244084 0.203838 0.434242 0.114442 0.217049 0.234267 0.333464 0.254828 0.092729 0.318979 0.333644 0.114919 0.184420 0.367017 Consensus sequence: DHDDGAACAATWDDHD Reverse complement motif 0.367017 0.114919 0.184420 0.333644 0.318979 0.254828 0.092729 0.333464 0.234267 0.114442 0.217049 0.434242 0.203838 0.100304 0.244084 0.451773 0.407399 0.015453 0.085481 0.491667 0.953653 0.011927 0.003795 0.030624 0.010130 0.004350 0.011425 0.974095 0.017433 0.003014 0.006136 0.973417 0.005230 0.008904 0.937364 0.048502 0.014386 0.003817 0.005452 0.976345 0.015612 0.026174 0.130622 0.827592 0.148292 0.632311 0.091229 0.128169 0.169610 0.093619 0.289963 0.446808 0.362924 0.122462 0.256979 0.257635 0.398174 0.197076 0.146872 0.257879 0.388366 0.133033 0.173233 0.305368 Consensus sequence: DHDDWATTGTTCDDHD Alignment: DHDDWATTGTTCDDHD -TTTTATTGTYAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00207 Hoxb9 Original Motif Original Motif Backward 5 12 0.024832 Species: Mus musculus Original motif 0.369205 0.191401 0.373182 0.066211 0.357429 0.160246 0.408701 0.073624 0.576965 0.069294 0.310696 0.043045 0.103797 0.127691 0.646641 0.121871 0.023188 0.657132 0.005598 0.314082 0.420260 0.543925 0.009350 0.026464 0.944117 0.003851 0.047375 0.004658 0.007642 0.006158 0.004106 0.982094 0.728623 0.003283 0.002505 0.265589 0.958302 0.002642 0.002614 0.036442 0.969909 0.004265 0.002650 0.023176 0.869075 0.011516 0.028466 0.090943 0.336102 0.198102 0.075230 0.390566 0.203557 0.271818 0.098338 0.426287 0.226605 0.448090 0.146026 0.179278 0.252426 0.177812 0.357334 0.212429 Consensus sequence: VRRGCMATAAAAHHHD Reverse complement motif 0.252426 0.357334 0.177812 0.212429 0.226605 0.146026 0.448090 0.179278 0.426287 0.271818 0.098338 0.203557 0.390566 0.198102 0.075230 0.336102 0.090943 0.011516 0.028466 0.869075 0.023176 0.004265 0.002650 0.969909 0.036442 0.002642 0.002614 0.958302 0.265589 0.003283 0.002505 0.728623 0.982094 0.006158 0.004106 0.007642 0.004658 0.003851 0.047375 0.944117 0.420260 0.009350 0.543925 0.026464 0.023188 0.005598 0.657132 0.314082 0.103797 0.646641 0.127691 0.121871 0.043045 0.069294 0.310696 0.576965 0.357429 0.408701 0.160246 0.073624 0.369205 0.373182 0.191401 0.066211 Consensus sequence: HDHHTTTTATRGCKMV Alignment: VRRGCMATAAAAHHHD ATMACAATAAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 16 Motif name: Motif 16 Original motif 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: ACAAWTRATTTTGA Reserve complement motif 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: TCAAAATKAWTTGT ************************************************************************ Best Matches for Motif ID 16 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Original Motif Original Motif Backward 1 14 0.053004 Species: Mus musculus Original motif 0.360997 0.300272 0.115555 0.223177 0.309749 0.228429 0.166233 0.295589 0.149419 0.176868 0.240155 0.433558 0.379704 0.095791 0.276373 0.248133 0.394549 0.174184 0.130641 0.300626 0.443749 0.070776 0.211081 0.274393 0.364301 0.074356 0.370406 0.190936 0.791976 0.038475 0.093390 0.076159 0.963721 0.001826 0.002456 0.031997 0.004516 0.954596 0.008092 0.032796 0.981080 0.002062 0.002161 0.014697 0.986185 0.001846 0.006976 0.004992 0.059567 0.003649 0.002189 0.934595 0.495328 0.024257 0.240450 0.239965 0.305027 0.094878 0.526069 0.074025 0.418442 0.196237 0.158323 0.226998 0.336713 0.220452 0.191155 0.251680 0.192296 0.300342 0.169047 0.338315 0.240387 0.144634 0.128513 0.486465 0.290763 0.271259 0.116600 0.321377 0.224825 0.296233 0.229255 0.249687 0.493240 0.171285 0.075148 0.260326 Consensus sequence: HHBDHDDAACAATDRHHHHHBW Reverse complement motif 0.260326 0.171285 0.075148 0.493240 0.224825 0.229255 0.296233 0.249687 0.321377 0.271259 0.116600 0.290763 0.486465 0.144634 0.128513 0.240387 0.338315 0.300342 0.169047 0.192296 0.251680 0.220452 0.191155 0.336713 0.226998 0.196237 0.158323 0.418442 0.305027 0.526069 0.094878 0.074025 0.239965 0.024257 0.240450 0.495328 0.934595 0.003649 0.002189 0.059567 0.004992 0.001846 0.006976 0.986185 0.014697 0.002062 0.002161 0.981080 0.004516 0.008092 0.954596 0.032796 0.031997 0.001826 0.002456 0.963721 0.076159 0.038475 0.093390 0.791976 0.364301 0.370406 0.074356 0.190936 0.274393 0.070776 0.211081 0.443749 0.300626 0.174184 0.130641 0.394549 0.248133 0.095791 0.276373 0.379704 0.433558 0.176868 0.240155 0.149419 0.295589 0.228429 0.166233 0.309749 0.223177 0.300272 0.115555 0.360997 Consensus sequence: WBHHHHHMDATTGTTHDHDVHH Alignment: HHBDHDDAACAATDRHHHHHBW --------ACAAWTRATTTTGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00158 Pou1f1 Reverse Complement Reverse Complement Forward 2 14 0.059328 Species: Mus musculus Original motif 0.295263 0.137800 0.328645 0.238292 0.387209 0.237690 0.259236 0.115864 0.268499 0.186022 0.204498 0.340981 0.090539 0.048765 0.208432 0.652264 0.800740 0.097775 0.022556 0.078929 0.887622 0.039701 0.022023 0.050654 0.055749 0.014475 0.010097 0.919679 0.033219 0.015438 0.020921 0.930422 0.930422 0.020921 0.015438 0.033219 0.919679 0.010097 0.014475 0.055749 0.050654 0.022023 0.039701 0.887622 0.078929 0.022556 0.097775 0.800740 0.791767 0.093557 0.016568 0.098108 0.434075 0.114564 0.205969 0.245392 0.241512 0.188802 0.333256 0.236431 0.223047 0.136482 0.196481 0.443990 0.153804 0.483207 0.182120 0.180869 Consensus sequence: DVDTAATTAATTADDDB Reverse complement motif 0.153804 0.182120 0.483207 0.180869 0.443990 0.136482 0.196481 0.223047 0.241512 0.333256 0.188802 0.236431 0.245392 0.114564 0.205969 0.434075 0.098108 0.093557 0.016568 0.791767 0.800740 0.022556 0.097775 0.078929 0.887622 0.022023 0.039701 0.050654 0.055749 0.010097 0.014475 0.919679 0.033219 0.020921 0.015438 0.930422 0.930422 0.015438 0.020921 0.033219 0.919679 0.014475 0.010097 0.055749 0.050654 0.039701 0.022023 0.887622 0.078929 0.097775 0.022556 0.800740 0.652264 0.048765 0.208432 0.090539 0.340981 0.186022 0.204498 0.268499 0.115864 0.237690 0.259236 0.387209 0.295263 0.328645 0.137800 0.238292 Consensus sequence: BDHDTAATTAATTADBH Alignment: BDHDTAATTAATTADBH -TCAAAATKAWTTGT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00128 Pou3f2 Reverse Complement Reverse Complement Forward 3 14 0.061802 Species: Mus musculus Original motif 0.153980 0.256313 0.453304 0.136403 0.293307 0.185897 0.233506 0.287290 0.231217 0.106311 0.217581 0.444891 0.694066 0.066485 0.110573 0.128876 0.617717 0.144842 0.099112 0.138329 0.070264 0.240528 0.004998 0.684210 0.014444 0.030268 0.005503 0.949784 0.972612 0.013685 0.004717 0.008987 0.980758 0.002352 0.003968 0.012922 0.013839 0.002478 0.003880 0.979802 0.010216 0.005118 0.047808 0.936857 0.955106 0.017358 0.006582 0.020954 0.358783 0.018538 0.532778 0.089901 0.089493 0.164493 0.267539 0.478475 0.247125 0.136760 0.281060 0.335056 0.242054 0.255243 0.206580 0.296122 0.284093 0.145319 0.355081 0.215506 Consensus sequence: VDDAATTAATTARBDHD Reverse complement motif 0.284093 0.355081 0.145319 0.215506 0.296122 0.255243 0.206580 0.242054 0.335056 0.136760 0.281060 0.247125 0.478475 0.164493 0.267539 0.089493 0.358783 0.532778 0.018538 0.089901 0.020954 0.017358 0.006582 0.955106 0.936857 0.005118 0.047808 0.010216 0.979802 0.002478 0.003880 0.013839 0.012922 0.002352 0.003968 0.980758 0.008987 0.013685 0.004717 0.972612 0.949784 0.030268 0.005503 0.014444 0.684210 0.240528 0.004998 0.070264 0.138329 0.144842 0.099112 0.617717 0.128876 0.066485 0.110573 0.694066 0.444891 0.106311 0.217581 0.231217 0.287290 0.185897 0.233506 0.293307 0.153980 0.453304 0.256313 0.136403 Consensus sequence: HHDVMTAATTAATTDDV Alignment: HHDVMTAATTAATTDDV --TCAAAATKAWTTGT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00105 Pou3f4 Reverse Complement Reverse Complement Forward 2 14 0.062015 Species: Mus musculus Original motif 0.333256 0.132424 0.289920 0.244400 0.331200 0.265280 0.244521 0.158999 0.206284 0.201415 0.180436 0.411864 0.121526 0.066278 0.220348 0.591848 0.836640 0.078351 0.021503 0.063506 0.916787 0.033485 0.017390 0.032338 0.064856 0.009246 0.006903 0.918996 0.027148 0.008390 0.016874 0.947588 0.947588 0.016874 0.008390 0.027148 0.918996 0.006903 0.009246 0.064856 0.032338 0.017390 0.033485 0.916787 0.063506 0.021503 0.078351 0.836640 0.822585 0.074316 0.009738 0.093361 0.480273 0.158803 0.195041 0.165883 0.248880 0.178794 0.261624 0.310702 0.212936 0.127454 0.166193 0.493416 0.157615 0.478760 0.161072 0.202554 Consensus sequence: DVHTAATTAATTADDDB Reverse complement motif 0.157615 0.161072 0.478760 0.202554 0.493416 0.127454 0.166193 0.212936 0.310702 0.178794 0.261624 0.248880 0.165883 0.158803 0.195041 0.480273 0.093361 0.074316 0.009738 0.822585 0.836640 0.021503 0.078351 0.063506 0.916787 0.017390 0.033485 0.032338 0.064856 0.006903 0.009246 0.918996 0.027148 0.016874 0.008390 0.947588 0.947588 0.008390 0.016874 0.027148 0.918996 0.009246 0.006903 0.064856 0.032338 0.033485 0.017390 0.916787 0.063506 0.078351 0.021503 0.836640 0.591848 0.066278 0.220348 0.121526 0.411864 0.201415 0.180436 0.206284 0.158999 0.265280 0.244521 0.331200 0.244400 0.132424 0.289920 0.333256 Consensus sequence: BDDDTAATTAATTAHBD Alignment: BDDDTAATTAATTAHBD -TCAAAATKAWTTGT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00200 Nkx6-1_2825.1 Reverse Complement Reverse Complement Backward 2 14 0.062300 Species: Mus musculus Original motif 0.227745 0.143729 0.473157 0.155369 0.339118 0.308916 0.205493 0.146474 0.345779 0.158724 0.153018 0.342479 0.557584 0.079553 0.110321 0.252542 0.771651 0.018170 0.024962 0.185218 0.184990 0.007357 0.023611 0.784042 0.004607 0.044635 0.000601 0.950157 0.986717 0.002383 0.004487 0.006413 0.983766 0.001866 0.002672 0.011697 0.017243 0.002934 0.001772 0.978051 0.012392 0.014879 0.166863 0.805867 0.883539 0.002678 0.087438 0.026345 0.315534 0.452703 0.102959 0.128804 0.115226 0.301679 0.112527 0.470568 0.136048 0.255000 0.214893 0.394059 0.142643 0.308403 0.250214 0.298740 0.061431 0.237193 0.507859 0.193517 Consensus sequence: DVHAATTAATTAMYBBG Reverse complement motif 0.061431 0.507859 0.237193 0.193517 0.142643 0.250214 0.308403 0.298740 0.394059 0.255000 0.214893 0.136048 0.470568 0.301679 0.112527 0.115226 0.315534 0.102959 0.452703 0.128804 0.026345 0.002678 0.087438 0.883539 0.805867 0.014879 0.166863 0.012392 0.978051 0.002934 0.001772 0.017243 0.011697 0.001866 0.002672 0.983766 0.006413 0.002383 0.004487 0.986717 0.950157 0.044635 0.000601 0.004607 0.784042 0.007357 0.023611 0.184990 0.185218 0.018170 0.024962 0.771651 0.252542 0.079553 0.110321 0.557584 0.342479 0.158724 0.153018 0.345779 0.146474 0.308916 0.205493 0.339118 0.227745 0.473157 0.143729 0.155369 Consensus sequence: CBVMRTAATTAATTHBH Alignment: CBVMRTAATTAATTHBH --TCAAAATKAWTTGT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 17 Motif name: Motif 17 Original motif 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: AAAAATGAAT Reserve complement motif 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: ATTCATTTTT ************************************************************************ Best Matches for Motif ID 17 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00055 Hbp1_primary Original Motif Original Motif Forward 4 10 0.002169 Species: Mus musculus Original motif 0.348694 0.177225 0.158977 0.315104 0.241477 0.301470 0.225252 0.231801 0.299530 0.177310 0.188699 0.334462 0.413829 0.141414 0.102784 0.341973 0.032644 0.017968 0.004577 0.944811 0.021091 0.330699 0.642563 0.005647 0.969224 0.001914 0.005956 0.022906 0.969063 0.003485 0.003398 0.024054 0.013104 0.003523 0.002842 0.980532 0.005485 0.020244 0.932599 0.041672 0.757494 0.002617 0.231695 0.008193 0.865658 0.039206 0.073039 0.022097 0.110535 0.114879 0.043620 0.730965 0.186322 0.154540 0.442471 0.216667 0.366490 0.152622 0.256688 0.224200 0.216146 0.261309 0.238703 0.283842 Consensus sequence: HHDWTSAATGAATDDB Reverse complement motif 0.283842 0.261309 0.238703 0.216146 0.224200 0.152622 0.256688 0.366490 0.186322 0.442471 0.154540 0.216667 0.730965 0.114879 0.043620 0.110535 0.022097 0.039206 0.073039 0.865658 0.008193 0.002617 0.231695 0.757494 0.005485 0.932599 0.020244 0.041672 0.980532 0.003523 0.002842 0.013104 0.024054 0.003485 0.003398 0.969063 0.022906 0.001914 0.005956 0.969224 0.021091 0.642563 0.330699 0.005647 0.944811 0.017968 0.004577 0.032644 0.341973 0.141414 0.102784 0.413829 0.334462 0.177310 0.188699 0.299530 0.241477 0.225252 0.301470 0.231801 0.315104 0.177225 0.158977 0.348694 Consensus sequence: VDHATTCATTSAWDDH Alignment: HHDWTSAATGAATDDB ---AAAAATGAAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00145 Barhl2 Original Motif Original Motif Backward 7 10 0.010273 Species: Mus musculus Original motif 0.461695 0.224449 0.118884 0.194972 0.573918 0.178052 0.084607 0.163423 0.509202 0.299283 0.046830 0.144686 0.781754 0.035879 0.132996 0.049371 0.909629 0.018003 0.066327 0.006042 0.185305 0.442819 0.168153 0.203723 0.004152 0.938941 0.000741 0.056166 0.952728 0.004094 0.036915 0.006262 0.962648 0.006522 0.001095 0.029735 0.002949 0.002007 0.002143 0.992902 0.002773 0.003794 0.001682 0.991751 0.985960 0.000635 0.003183 0.010222 0.728479 0.023198 0.141457 0.106866 0.100754 0.330009 0.347597 0.221641 0.392007 0.211701 0.147142 0.249150 0.323968 0.271247 0.123950 0.280834 Consensus sequence: HAMAAHCAATTAABHH Reverse complement motif 0.280834 0.271247 0.123950 0.323968 0.249150 0.211701 0.147142 0.392007 0.100754 0.347597 0.330009 0.221641 0.106866 0.023198 0.141457 0.728479 0.010222 0.000635 0.003183 0.985960 0.991751 0.003794 0.001682 0.002773 0.992902 0.002007 0.002143 0.002949 0.029735 0.006522 0.001095 0.962648 0.006262 0.004094 0.036915 0.952728 0.004152 0.000741 0.938941 0.056166 0.185305 0.168153 0.442819 0.203723 0.006042 0.018003 0.066327 0.909629 0.049371 0.035879 0.132996 0.781754 0.144686 0.299283 0.046830 0.509202 0.163423 0.178052 0.084607 0.573918 0.194972 0.224449 0.118884 0.461695 Consensus sequence: HHBTTAATTGDTTYTH Alignment: HAMAAHCAATTAABHH AAAAATGAAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00171 Msx3 Reverse Complement Reverse Complement Forward 3 10 0.010687 Species: Mus musculus Original motif 0.317812 0.352438 0.231628 0.098123 0.601471 0.133830 0.164947 0.099752 0.399508 0.293187 0.098524 0.208781 0.754569 0.054130 0.133622 0.057678 0.770469 0.088090 0.086904 0.054537 0.038689 0.673100 0.189096 0.099115 0.004935 0.522968 0.000482 0.471615 0.986316 0.001484 0.009222 0.002978 0.991636 0.005079 0.001457 0.001828 0.009156 0.001857 0.001081 0.987906 0.013688 0.006588 0.000191 0.979532 0.987635 0.000354 0.005166 0.006845 0.701095 0.027828 0.154852 0.116224 0.181731 0.184800 0.303458 0.330011 0.224816 0.221032 0.182405 0.371747 0.310539 0.208307 0.099081 0.382073 Consensus sequence: VAHAACYAATTAABHH Reverse complement motif 0.382073 0.208307 0.099081 0.310539 0.371747 0.221032 0.182405 0.224816 0.330011 0.184800 0.303458 0.181731 0.116224 0.027828 0.154852 0.701095 0.006845 0.000354 0.005166 0.987635 0.979532 0.006588 0.000191 0.013688 0.987906 0.001857 0.001081 0.009156 0.001828 0.005079 0.001457 0.991636 0.002978 0.001484 0.009222 0.986316 0.004935 0.000482 0.522968 0.471615 0.038689 0.189096 0.673100 0.099115 0.054537 0.088090 0.086904 0.770469 0.057678 0.054130 0.133622 0.754569 0.208781 0.293187 0.098524 0.399508 0.099752 0.133830 0.164947 0.601471 0.317812 0.231628 0.352438 0.098123 Consensus sequence: HHVTTAATTKGTTHTV Alignment: HHVTTAATTKGTTHTV --ATTCATTTTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00044 Mafk_secondary Reverse Complement Reverse Complement Forward 3 10 0.013174 Species: Mus musculus Original motif 0.289934 0.244974 0.342021 0.123071 0.317105 0.250774 0.206169 0.225952 0.589909 0.146264 0.176464 0.087364 0.805648 0.031025 0.116712 0.046614 0.859239 0.012630 0.068740 0.059391 0.877855 0.017270 0.013520 0.091354 0.822443 0.051458 0.029433 0.096666 0.175032 0.076822 0.256419 0.491726 0.028231 0.131221 0.031440 0.809107 0.050608 0.039418 0.847824 0.062150 0.041983 0.868232 0.042708 0.047077 0.757931 0.111841 0.090214 0.040013 0.451956 0.283644 0.033652 0.230747 0.058765 0.285975 0.414514 0.240747 0.391919 0.133805 0.407813 0.066464 Consensus sequence: VHAAAAADTGCAHBR Reverse complement motif 0.391919 0.407813 0.133805 0.066464 0.058765 0.414514 0.285975 0.240747 0.230747 0.283644 0.033652 0.451956 0.040013 0.111841 0.090214 0.757931 0.041983 0.042708 0.868232 0.047077 0.050608 0.847824 0.039418 0.062150 0.809107 0.131221 0.031440 0.028231 0.491726 0.076822 0.256419 0.175032 0.096666 0.051458 0.029433 0.822443 0.091354 0.017270 0.013520 0.877855 0.059391 0.012630 0.068740 0.859239 0.046614 0.031025 0.116712 0.805648 0.087364 0.146264 0.176464 0.589909 0.225952 0.250774 0.206169 0.317105 0.289934 0.342021 0.244974 0.123071 Consensus sequence: MBHTGCADTTTTTHV Alignment: MBHTGCADTTTTTHV --ATTCATTTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00105 Pou3f4 Original Motif Original Motif Backward 7 10 0.015705 Species: Mus musculus Original motif 0.333256 0.132424 0.289920 0.244400 0.331200 0.265280 0.244521 0.158999 0.206284 0.201415 0.180436 0.411864 0.121526 0.066278 0.220348 0.591848 0.836640 0.078351 0.021503 0.063506 0.916787 0.033485 0.017390 0.032338 0.064856 0.009246 0.006903 0.918996 0.027148 0.008390 0.016874 0.947588 0.947588 0.016874 0.008390 0.027148 0.918996 0.006903 0.009246 0.064856 0.032338 0.017390 0.033485 0.916787 0.063506 0.021503 0.078351 0.836640 0.822585 0.074316 0.009738 0.093361 0.480273 0.158803 0.195041 0.165883 0.248880 0.178794 0.261624 0.310702 0.212936 0.127454 0.166193 0.493416 0.157615 0.478760 0.161072 0.202554 Consensus sequence: DVHTAATTAATTADDDB Reverse complement motif 0.157615 0.161072 0.478760 0.202554 0.493416 0.127454 0.166193 0.212936 0.310702 0.178794 0.261624 0.248880 0.165883 0.158803 0.195041 0.480273 0.093361 0.074316 0.009738 0.822585 0.836640 0.021503 0.078351 0.063506 0.916787 0.017390 0.033485 0.032338 0.064856 0.006903 0.009246 0.918996 0.027148 0.016874 0.008390 0.947588 0.947588 0.008390 0.016874 0.027148 0.918996 0.009246 0.006903 0.064856 0.032338 0.033485 0.017390 0.916787 0.063506 0.078351 0.021503 0.836640 0.591848 0.066278 0.220348 0.121526 0.411864 0.201415 0.180436 0.206284 0.158999 0.265280 0.244521 0.331200 0.244400 0.132424 0.289920 0.333256 Consensus sequence: BDDDTAATTAATTAHBD Alignment: DVHTAATTAATTADDDB -AAAAATGAAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 18 Motif name: Motif 18 Original motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.500000 0.000000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: TTAGWTWATAA Reserve complement motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.500000 0.000000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: TTATWAWCTAA ************************************************************************ Best Matches for Motif ID 18 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00262 Lhx1 Original Motif Original Motif Forward 5 11 0.035895 Species: Mus musculus Original motif 0.315209 0.366241 0.224448 0.094102 0.226797 0.179144 0.492088 0.101972 0.381904 0.174944 0.190109 0.253043 0.579946 0.093451 0.164863 0.161740 0.033857 0.165951 0.023937 0.776255 0.010562 0.080337 0.000382 0.908720 0.983678 0.007671 0.007262 0.001389 0.976701 0.001039 0.004283 0.017977 0.017977 0.004283 0.001039 0.976701 0.001389 0.007262 0.007671 0.983678 0.908720 0.000382 0.080337 0.010562 0.776255 0.023937 0.165951 0.033857 0.372268 0.146397 0.084885 0.396450 0.497647 0.117799 0.091325 0.293229 0.643159 0.113094 0.055630 0.188117 0.275637 0.292310 0.136698 0.295355 0.149905 0.181595 0.349326 0.319174 Consensus sequence: VVDATTAATTAAWWAHB Reverse complement motif 0.149905 0.349326 0.181595 0.319174 0.295355 0.292310 0.136698 0.275637 0.188117 0.113094 0.055630 0.643159 0.293229 0.117799 0.091325 0.497647 0.396450 0.146397 0.084885 0.372268 0.033857 0.023937 0.165951 0.776255 0.010562 0.000382 0.080337 0.908720 0.983678 0.007262 0.007671 0.001389 0.976701 0.004283 0.001039 0.017977 0.017977 0.001039 0.004283 0.976701 0.001389 0.007671 0.007262 0.983678 0.908720 0.080337 0.000382 0.010562 0.776255 0.165951 0.023937 0.033857 0.161740 0.093451 0.164863 0.579946 0.253043 0.174944 0.190109 0.381904 0.226797 0.492088 0.179144 0.101972 0.315209 0.224448 0.366241 0.094102 Consensus sequence: BHTWWTTAATTAATDVV Alignment: VVDATTAATTAAWWAHB ----TTAGWTWATAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00129 Pou3f1 Original Motif Reverse Complement Backward 4 11 0.038042 Species: Mus musculus Original motif 0.383980 0.129273 0.292995 0.193752 0.347530 0.257268 0.249014 0.146188 0.202288 0.273246 0.214253 0.310213 0.096662 0.048219 0.170550 0.684569 0.817669 0.126839 0.019054 0.036439 0.908384 0.034202 0.022731 0.034683 0.049617 0.009722 0.007610 0.933051 0.030623 0.010272 0.016239 0.942866 0.942866 0.016239 0.010272 0.030623 0.933051 0.007610 0.009722 0.049617 0.034683 0.022731 0.034202 0.908384 0.036439 0.019054 0.126839 0.817669 0.808629 0.107163 0.007221 0.076987 0.658159 0.103835 0.161364 0.076642 0.120399 0.197946 0.334527 0.347128 0.202637 0.115217 0.144762 0.537384 0.269009 0.275163 0.221820 0.234008 Consensus sequence: DVBTAATTAATTAABTH Reverse complement motif 0.269009 0.221820 0.275163 0.234008 0.537384 0.115217 0.144762 0.202637 0.347128 0.197946 0.334527 0.120399 0.076642 0.103835 0.161364 0.658159 0.076987 0.107163 0.007221 0.808629 0.817669 0.019054 0.126839 0.036439 0.908384 0.022731 0.034202 0.034683 0.049617 0.007610 0.009722 0.933051 0.030623 0.016239 0.010272 0.942866 0.942866 0.010272 0.016239 0.030623 0.933051 0.009722 0.007610 0.049617 0.034683 0.034202 0.022731 0.908384 0.036439 0.126839 0.019054 0.817669 0.684569 0.048219 0.170550 0.096662 0.310213 0.273246 0.214253 0.202288 0.146188 0.257268 0.249014 0.347530 0.193752 0.129273 0.292995 0.383980 Consensus sequence: DAVTTAATTAATTAVBD Alignment: DAVTTAATTAATTAVBD ---TTAGWTWATAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00082 Zfp187_primary Original Motif Reverse Complement Backward 1 11 0.038402 Species: Mus musculus Original motif 0.190539 0.277187 0.240231 0.292043 0.132707 0.187246 0.111293 0.568754 0.936112 0.021141 0.033932 0.008815 0.012721 0.023350 0.004164 0.959765 0.007185 0.002386 0.987110 0.003318 0.059134 0.009005 0.034016 0.897845 0.900906 0.002575 0.086677 0.009842 0.003163 0.941371 0.002196 0.053270 0.034631 0.265318 0.037179 0.662873 0.967171 0.007014 0.003028 0.022787 0.980796 0.002228 0.010049 0.006927 0.020630 0.005755 0.005408 0.968208 0.427020 0.122682 0.118347 0.331951 0.447075 0.284990 0.061633 0.206303 Consensus sequence: BTATGTACTAATWH Reverse complement motif 0.206303 0.284990 0.061633 0.447075 0.331951 0.122682 0.118347 0.427020 0.968208 0.005755 0.005408 0.020630 0.006927 0.002228 0.010049 0.980796 0.022787 0.007014 0.003028 0.967171 0.662873 0.265318 0.037179 0.034631 0.003163 0.002196 0.941371 0.053270 0.009842 0.002575 0.086677 0.900906 0.897845 0.009005 0.034016 0.059134 0.007185 0.987110 0.002386 0.003318 0.959765 0.023350 0.004164 0.012721 0.008815 0.021141 0.033932 0.936112 0.568754 0.187246 0.111293 0.132707 0.292043 0.277187 0.240231 0.190539 Consensus sequence: HWATTAGTACATAV Alignment: BTATGTACTAATWH ---TTAGWTWATAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00146 Pou6f1_1731.2 Reverse Complement Reverse Complement Forward 7 11 0.038794 Species: Mus musculus Original motif 0.275324 0.279787 0.343261 0.101627 0.427224 0.235591 0.082495 0.254690 0.277238 0.297129 0.215567 0.210066 0.186995 0.266722 0.455539 0.090745 0.497950 0.067684 0.016924 0.417442 0.013679 0.002540 0.000655 0.983126 0.983167 0.000504 0.003387 0.012942 0.991219 0.001357 0.001850 0.005574 0.001629 0.002451 0.002946 0.992975 0.007831 0.001171 0.699966 0.291032 0.988819 0.004496 0.003298 0.003387 0.007387 0.005766 0.955350 0.031496 0.080202 0.396531 0.403339 0.119929 0.208796 0.127415 0.025199 0.638589 0.167145 0.149170 0.303743 0.379941 0.243308 0.165096 0.382490 0.209106 0.295348 0.315506 0.163899 0.225247 Consensus sequence: VHVVWTAATGAGSTDDH Reverse complement motif 0.295348 0.163899 0.315506 0.225247 0.243308 0.382490 0.165096 0.209106 0.379941 0.149170 0.303743 0.167145 0.638589 0.127415 0.025199 0.208796 0.080202 0.403339 0.396531 0.119929 0.007387 0.955350 0.005766 0.031496 0.003387 0.004496 0.003298 0.988819 0.007831 0.699966 0.001171 0.291032 0.992975 0.002451 0.002946 0.001629 0.005574 0.001357 0.001850 0.991219 0.012942 0.000504 0.003387 0.983167 0.983126 0.002540 0.000655 0.013679 0.417442 0.067684 0.016924 0.497950 0.186995 0.455539 0.266722 0.090745 0.277238 0.215567 0.297129 0.210066 0.254690 0.235591 0.082495 0.427224 0.275324 0.343261 0.279787 0.101627 Consensus sequence: DHDASCTCATTAWVVHV Alignment: DHDASCTCATTAWVVHV ------TTATWAWCTAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00169 Lmx1b Reverse Complement Original Motif Backward 5 11 0.039503 Species: Mus musculus Original motif 0.336931 0.220707 0.306671 0.135692 0.251068 0.126246 0.394767 0.227919 0.318914 0.086872 0.150663 0.443551 0.368649 0.051170 0.092361 0.487819 0.359682 0.088506 0.064771 0.487041 0.019535 0.162692 0.015925 0.801848 0.015902 0.024224 0.000652 0.959222 0.974698 0.006086 0.002334 0.016882 0.978085 0.001281 0.005421 0.015214 0.015214 0.005421 0.001281 0.978085 0.016882 0.002334 0.006086 0.974698 0.959222 0.000652 0.024224 0.015902 0.801848 0.015925 0.162692 0.019535 0.242323 0.115688 0.116364 0.525625 0.283782 0.097563 0.188384 0.430271 0.252386 0.255982 0.135946 0.355686 0.141430 0.249462 0.350759 0.258349 Consensus sequence: VDWWWTTAATTAATDHB Reverse complement motif 0.141430 0.350759 0.249462 0.258349 0.355686 0.255982 0.135946 0.252386 0.430271 0.097563 0.188384 0.283782 0.525625 0.115688 0.116364 0.242323 0.019535 0.015925 0.162692 0.801848 0.015902 0.000652 0.024224 0.959222 0.974698 0.002334 0.006086 0.016882 0.978085 0.005421 0.001281 0.015214 0.015214 0.001281 0.005421 0.978085 0.016882 0.006086 0.002334 0.974698 0.959222 0.024224 0.000652 0.015902 0.801848 0.162692 0.015925 0.019535 0.487041 0.088506 0.064771 0.359682 0.487819 0.051170 0.092361 0.368649 0.443551 0.086872 0.150663 0.318914 0.251068 0.394767 0.126246 0.227919 0.135692 0.220707 0.306671 0.336931 Consensus sequence: BHDATTAATTAAWWWHB Alignment: VDWWWTTAATTAATDHB --TTATWAWCTAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 19 Motif name: Motif 19 Original motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: TTCWTAGATTAWA Reserve complement motif 0.000000 0.000000 0.000000 1.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: TWTAATCTAWGAA ************************************************************************ Best Matches for Motif ID 19 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00208 Obox5_2284.1 Reverse Complement Reverse Complement Backward 1 13 0.023393 Species: Mus musculus Original motif 0.281264 0.188968 0.136609 0.393160 0.344028 0.038266 0.328422 0.289284 0.266627 0.234290 0.328022 0.171062 0.393172 0.142839 0.379282 0.084706 0.110940 0.063210 0.811347 0.014502 0.089051 0.002920 0.905749 0.002280 0.008411 0.000554 0.984833 0.006202 0.987567 0.004995 0.000896 0.006542 0.003972 0.001261 0.003058 0.991709 0.007568 0.004773 0.000491 0.987168 0.974587 0.000828 0.001598 0.022987 0.799844 0.004926 0.020978 0.174252 0.383707 0.178162 0.082155 0.355976 0.074343 0.081369 0.030820 0.813467 0.182973 0.309007 0.180900 0.327119 0.274045 0.191530 0.121366 0.413060 0.286677 0.377630 0.141803 0.193890 Consensus sequence: HDVRGGGATTAAHTHHH Reverse complement motif 0.286677 0.141803 0.377630 0.193890 0.413060 0.191530 0.121366 0.274045 0.327119 0.309007 0.180900 0.182973 0.813467 0.081369 0.030820 0.074343 0.355976 0.178162 0.082155 0.383707 0.174252 0.004926 0.020978 0.799844 0.022987 0.000828 0.001598 0.974587 0.987168 0.004773 0.000491 0.007568 0.991709 0.001261 0.003058 0.003972 0.006542 0.004995 0.000896 0.987567 0.008411 0.984833 0.000554 0.006202 0.089051 0.905749 0.002920 0.002280 0.110940 0.811347 0.063210 0.014502 0.084706 0.142839 0.379282 0.393172 0.266627 0.328022 0.234290 0.171062 0.289284 0.038266 0.328422 0.344028 0.393160 0.188968 0.136609 0.281264 Consensus sequence: DHHAHTTAATCCCKVDH Alignment: DHHAHTTAATCCCKVDH ----TWTAATCTAWGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Reverse Complement Reverse Complement Backward 3 13 0.025182 Species: Mus musculus Original motif 0.151572 0.262753 0.258275 0.327401 0.221834 0.113385 0.275380 0.389400 0.297769 0.136928 0.134678 0.430625 0.270099 0.110415 0.271106 0.348380 0.265471 0.090253 0.223340 0.420936 0.616582 0.090091 0.171960 0.121367 0.197318 0.107541 0.406904 0.288237 0.798258 0.046950 0.001406 0.153385 0.003195 0.002516 0.989707 0.004582 0.991503 0.002748 0.002617 0.003132 0.005015 0.002764 0.003026 0.989195 0.948394 0.008932 0.001344 0.041330 0.973109 0.004100 0.004081 0.018710 0.040365 0.113905 0.828185 0.017545 0.736608 0.130524 0.113464 0.019404 0.415921 0.106101 0.316613 0.161365 0.376582 0.170927 0.155572 0.296919 0.137731 0.197151 0.211055 0.454064 0.324853 0.122747 0.246107 0.306293 0.462490 0.207311 0.159392 0.170807 0.380420 0.188972 0.311990 0.118618 0.222178 0.157873 0.380486 0.239463 Consensus sequence: BDHDDADAGATAAGADHBDHVD Reverse complement motif 0.222178 0.380486 0.157873 0.239463 0.118618 0.188972 0.311990 0.380420 0.170807 0.207311 0.159392 0.462490 0.306293 0.122747 0.246107 0.324853 0.454064 0.197151 0.211055 0.137731 0.296919 0.170927 0.155572 0.376582 0.161365 0.106101 0.316613 0.415921 0.019404 0.130524 0.113464 0.736608 0.040365 0.828185 0.113905 0.017545 0.018710 0.004100 0.004081 0.973109 0.041330 0.008932 0.001344 0.948394 0.989195 0.002764 0.003026 0.005015 0.003132 0.002748 0.002617 0.991503 0.003195 0.989707 0.002516 0.004582 0.153385 0.046950 0.001406 0.798258 0.197318 0.406904 0.107541 0.288237 0.121367 0.090091 0.171960 0.616582 0.420936 0.090253 0.223340 0.265471 0.348380 0.110415 0.271106 0.270099 0.430625 0.136928 0.134678 0.297769 0.389400 0.113385 0.275380 0.221834 0.327401 0.262753 0.258275 0.151572 Consensus sequence: HBHDVHDTCTTATCTHTDDHDV Alignment: HBHDVHDTCTTATCTHTDDHDV -------TWTAATCTAWGAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00208 Obox5_3963.2 Reverse Complement Reverse Complement Backward 1 13 0.026815 Species: Mus musculus Original motif 0.387261 0.198638 0.227497 0.186604 0.433519 0.034731 0.333894 0.197856 0.267661 0.212742 0.354328 0.165269 0.592496 0.107283 0.224595 0.075627 0.204749 0.093469 0.661179 0.040603 0.117847 0.005218 0.874222 0.002713 0.003947 0.001871 0.982671 0.011511 0.983643 0.007799 0.001236 0.007322 0.002525 0.002866 0.003899 0.990710 0.006852 0.004502 0.001227 0.987419 0.974671 0.000902 0.002297 0.022129 0.768669 0.009517 0.017357 0.204456 0.309857 0.185797 0.068291 0.436055 0.083091 0.099239 0.032683 0.784987 0.402339 0.181407 0.250088 0.166166 0.273450 0.139411 0.090102 0.497037 0.280230 0.335645 0.216046 0.168079 Consensus sequence: VRVAGGGATTAAHTVWV Reverse complement motif 0.280230 0.216046 0.335645 0.168079 0.497037 0.139411 0.090102 0.273450 0.166166 0.181407 0.250088 0.402339 0.784987 0.099239 0.032683 0.083091 0.436055 0.185797 0.068291 0.309857 0.204456 0.009517 0.017357 0.768669 0.022129 0.000902 0.002297 0.974671 0.987419 0.004502 0.001227 0.006852 0.990710 0.002866 0.003899 0.002525 0.007322 0.007799 0.001236 0.983643 0.003947 0.982671 0.001871 0.011511 0.117847 0.874222 0.005218 0.002713 0.204749 0.661179 0.093469 0.040603 0.075627 0.107283 0.224595 0.592496 0.267661 0.354328 0.212742 0.165269 0.197856 0.034731 0.333894 0.433519 0.186604 0.198638 0.227497 0.387261 Consensus sequence: VWBAHTTAATCCCTVKB Alignment: VWBAHTTAATCCCTVKB ----TWTAATCTAWGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00188 Lmx1a Original Motif Reverse Complement Forward 2 13 0.028790 Species: Mus musculus Original motif 0.163027 0.506393 0.246327 0.084254 0.173471 0.211164 0.477036 0.138330 0.431859 0.182416 0.155298 0.230427 0.420560 0.127574 0.126915 0.324951 0.060842 0.128686 0.037075 0.773398 0.032236 0.035967 0.001358 0.930439 0.938541 0.008352 0.007051 0.046057 0.964464 0.001596 0.003362 0.030579 0.030579 0.003362 0.001596 0.964464 0.046057 0.007051 0.008352 0.938541 0.930439 0.001358 0.035967 0.032236 0.773398 0.037075 0.128686 0.060842 0.498149 0.057242 0.091924 0.352686 0.520755 0.121277 0.054120 0.303848 0.483290 0.175070 0.069683 0.271957 0.221557 0.366894 0.153619 0.257930 0.167920 0.342643 0.169856 0.319581 Consensus sequence: CVHHTTAATTAAWWWHB Reverse complement motif 0.167920 0.169856 0.342643 0.319581 0.221557 0.153619 0.366894 0.257930 0.271957 0.175070 0.069683 0.483290 0.303848 0.121277 0.054120 0.520755 0.352686 0.057242 0.091924 0.498149 0.060842 0.037075 0.128686 0.773398 0.032236 0.001358 0.035967 0.930439 0.938541 0.007051 0.008352 0.046057 0.964464 0.003362 0.001596 0.030579 0.030579 0.001596 0.003362 0.964464 0.046057 0.008352 0.007051 0.938541 0.930439 0.035967 0.001358 0.032236 0.773398 0.128686 0.037075 0.060842 0.324951 0.127574 0.126915 0.420560 0.230427 0.182416 0.155298 0.431859 0.173471 0.477036 0.211164 0.138330 0.163027 0.246327 0.506393 0.084254 Consensus sequence: BDWWWTTAATTAAHHVG Alignment: BDWWWTTAATTAAHHVG -TTCWTAGATTAWA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00109 Obox6 Original Motif Original Motif Forward 2 13 0.028848 Species: Mus musculus Original motif 0.505449 0.243908 0.109355 0.141288 0.297413 0.206507 0.201510 0.294571 0.691300 0.037294 0.141216 0.130190 0.680730 0.092257 0.036853 0.190160 0.348071 0.118125 0.345388 0.188416 0.140809 0.605582 0.189427 0.064182 0.039008 0.001848 0.956724 0.002420 0.003771 0.000570 0.983421 0.012238 0.969153 0.028918 0.000574 0.001355 0.003106 0.002396 0.001479 0.993019 0.009026 0.012438 0.000393 0.978144 0.969731 0.000460 0.002034 0.027774 0.444629 0.020696 0.076200 0.458475 0.254738 0.341763 0.053351 0.350148 0.119131 0.226982 0.464626 0.189261 Consensus sequence: AHAADCGGATTAWHB Reverse complement motif 0.119131 0.464626 0.226982 0.189261 0.350148 0.341763 0.053351 0.254738 0.458475 0.020696 0.076200 0.444629 0.027774 0.000460 0.002034 0.969731 0.978144 0.012438 0.000393 0.009026 0.993019 0.002396 0.001479 0.003106 0.001355 0.028918 0.000574 0.969153 0.003771 0.983421 0.000570 0.012238 0.039008 0.956724 0.001848 0.002420 0.140809 0.189427 0.605582 0.064182 0.188416 0.118125 0.345388 0.348071 0.190160 0.092257 0.036853 0.680730 0.130190 0.037294 0.141216 0.691300 0.294571 0.206507 0.201510 0.297413 0.141288 0.243908 0.109355 0.505449 Consensus sequence: BHWTAATCCGDTTHT Alignment: AHAADCGGATTAWHB -TTCWTAGATTAWA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 20 Motif name: Motif 20 Original motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: TTMAAAGATTT Reserve complement motif 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: AAATCTTTYAA ************************************************************************ Best Matches for Motif ID 20 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00145 Barhl2 Reverse Complement Original Motif Backward 4 11 0.025100 Species: Mus musculus Original motif 0.461695 0.224449 0.118884 0.194972 0.573918 0.178052 0.084607 0.163423 0.509202 0.299283 0.046830 0.144686 0.781754 0.035879 0.132996 0.049371 0.909629 0.018003 0.066327 0.006042 0.185305 0.442819 0.168153 0.203723 0.004152 0.938941 0.000741 0.056166 0.952728 0.004094 0.036915 0.006262 0.962648 0.006522 0.001095 0.029735 0.002949 0.002007 0.002143 0.992902 0.002773 0.003794 0.001682 0.991751 0.985960 0.000635 0.003183 0.010222 0.728479 0.023198 0.141457 0.106866 0.100754 0.330009 0.347597 0.221641 0.392007 0.211701 0.147142 0.249150 0.323968 0.271247 0.123950 0.280834 Consensus sequence: HAMAAHCAATTAABHH Reverse complement motif 0.280834 0.271247 0.123950 0.323968 0.249150 0.211701 0.147142 0.392007 0.100754 0.347597 0.330009 0.221641 0.106866 0.023198 0.141457 0.728479 0.010222 0.000635 0.003183 0.985960 0.991751 0.003794 0.001682 0.002773 0.992902 0.002007 0.002143 0.002949 0.029735 0.006522 0.001095 0.962648 0.006262 0.004094 0.036915 0.952728 0.004152 0.000741 0.938941 0.056166 0.185305 0.168153 0.442819 0.203723 0.006042 0.018003 0.066327 0.909629 0.049371 0.035879 0.132996 0.781754 0.144686 0.299283 0.046830 0.509202 0.163423 0.178052 0.084607 0.573918 0.194972 0.224449 0.118884 0.461695 Consensus sequence: HHBTTAATTGDTTYTH Alignment: HAMAAHCAATTAABHH --AAATCTTTYAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00258 Tgif2 Reverse Complement Original Motif Forward 3 11 0.027474 Species: Mus musculus Original motif 0.519684 0.141807 0.112153 0.226356 0.614097 0.079211 0.138045 0.168647 0.186975 0.327654 0.245051 0.240320 0.108289 0.303530 0.219106 0.369076 0.914812 0.012014 0.046628 0.026546 0.070482 0.163253 0.689315 0.076951 0.016354 0.972639 0.003648 0.007359 0.002043 0.018718 0.000384 0.978855 0.006109 0.001408 0.990736 0.001747 0.024783 0.002060 0.000402 0.972755 0.001485 0.991963 0.001756 0.004796 0.989335 0.001052 0.002320 0.007293 0.778804 0.056366 0.037632 0.127198 0.377980 0.094597 0.086888 0.440535 0.458125 0.289431 0.152762 0.099682 0.223103 0.435348 0.216962 0.124587 Consensus sequence: AABBAGCTGTCAAWVV Reverse complement motif 0.223103 0.216962 0.435348 0.124587 0.099682 0.289431 0.152762 0.458125 0.440535 0.094597 0.086888 0.377980 0.127198 0.056366 0.037632 0.778804 0.007293 0.001052 0.002320 0.989335 0.001485 0.001756 0.991963 0.004796 0.972755 0.002060 0.000402 0.024783 0.006109 0.990736 0.001408 0.001747 0.978855 0.018718 0.000384 0.002043 0.016354 0.003648 0.972639 0.007359 0.070482 0.689315 0.163253 0.076951 0.026546 0.012014 0.046628 0.914812 0.369076 0.303530 0.219106 0.108289 0.186975 0.245051 0.327654 0.240320 0.168647 0.079211 0.138045 0.614097 0.226356 0.141807 0.112153 0.519684 Consensus sequence: VBWTTGACAGCTVBTT Alignment: AABBAGCTGTCAAWVV --AAATCTTTYAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Original Motif Reverse Complement Forward 6 11 0.028083 Species: Mus musculus Original motif 0.281920 0.214207 0.278077 0.225796 0.325566 0.151435 0.298797 0.224202 0.290253 0.145824 0.243443 0.320480 0.069286 0.404645 0.141614 0.384454 0.070044 0.621448 0.142647 0.165862 0.007295 0.907657 0.038110 0.046938 0.015587 0.018273 0.000658 0.965482 0.005527 0.005886 0.001905 0.986682 0.024512 0.001189 0.001344 0.972955 0.007384 0.025221 0.952270 0.015125 0.966438 0.000630 0.002693 0.030239 0.082252 0.001173 0.001495 0.915080 0.030255 0.677155 0.275323 0.017267 0.199467 0.118815 0.056814 0.624905 0.345445 0.169597 0.216831 0.268127 0.278106 0.150864 0.173693 0.397336 0.251834 0.339733 0.219703 0.188730 Consensus sequence: DDDYCCTTTGATCTDDV Reverse complement motif 0.251834 0.219703 0.339733 0.188730 0.397336 0.150864 0.173693 0.278106 0.268127 0.169597 0.216831 0.345445 0.624905 0.118815 0.056814 0.199467 0.030255 0.275323 0.677155 0.017267 0.915080 0.001173 0.001495 0.082252 0.030239 0.000630 0.002693 0.966438 0.007384 0.952270 0.025221 0.015125 0.972955 0.001189 0.001344 0.024512 0.986682 0.005886 0.001905 0.005527 0.965482 0.018273 0.000658 0.015587 0.007295 0.038110 0.907657 0.046938 0.070044 0.142647 0.621448 0.165862 0.069286 0.141614 0.404645 0.384454 0.320480 0.145824 0.243443 0.290253 0.224202 0.151435 0.298797 0.325566 0.225796 0.214207 0.278077 0.281920 Consensus sequence: VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD -----TTMAAAGATTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00203 Pknox1 Reverse Complement Original Motif Backward 4 11 0.028539 Species: Mus musculus Original motif 0.436259 0.086706 0.169714 0.307321 0.433826 0.063296 0.358082 0.144795 0.324190 0.284651 0.208786 0.182372 0.054648 0.285295 0.518967 0.141090 0.922874 0.012239 0.042656 0.022231 0.036668 0.581917 0.338993 0.042422 0.021599 0.968542 0.006920 0.002939 0.001846 0.026071 0.000271 0.971812 0.007232 0.000773 0.989645 0.002350 0.019103 0.005771 0.000209 0.974917 0.001535 0.989111 0.000852 0.008502 0.989698 0.000915 0.004907 0.004480 0.679114 0.077050 0.037931 0.205904 0.330007 0.110122 0.067993 0.491878 0.286458 0.421726 0.186579 0.105236 0.199258 0.473968 0.173008 0.153766 Consensus sequence: DRVSASCTGTCAAWVV Reverse complement motif 0.199258 0.173008 0.473968 0.153766 0.286458 0.186579 0.421726 0.105236 0.491878 0.110122 0.067993 0.330007 0.205904 0.077050 0.037931 0.679114 0.004480 0.000915 0.004907 0.989698 0.001535 0.000852 0.989111 0.008502 0.974917 0.005771 0.000209 0.019103 0.007232 0.989645 0.000773 0.002350 0.971812 0.026071 0.000271 0.001846 0.021599 0.006920 0.968542 0.002939 0.036668 0.338993 0.581917 0.042422 0.022231 0.012239 0.042656 0.922874 0.054648 0.518967 0.285295 0.141090 0.182372 0.284651 0.208786 0.324190 0.144795 0.063296 0.358082 0.433826 0.307321 0.086706 0.169714 0.436259 Consensus sequence: VVWTTGACAGSTSBKD Alignment: DRVSASCTGTCAAWVV --AAATCTTTYAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00186 Meis1 Reverse Complement Original Motif Forward 3 11 0.029462 Species: Mus musculus Original motif 0.432115 0.114994 0.130835 0.322056 0.508081 0.060822 0.214256 0.216841 0.225875 0.276028 0.280982 0.217115 0.092373 0.286687 0.360933 0.260007 0.947172 0.005937 0.028595 0.018297 0.027829 0.439935 0.505051 0.027185 0.023801 0.963424 0.008205 0.004571 0.001548 0.018215 0.000406 0.979831 0.008422 0.001124 0.989007 0.001446 0.025343 0.004094 0.000241 0.970323 0.001451 0.992789 0.002037 0.003724 0.991202 0.001638 0.003159 0.004002 0.695910 0.022145 0.013657 0.268288 0.357895 0.090931 0.093796 0.457378 0.453163 0.204395 0.181067 0.161376 0.200615 0.393437 0.171398 0.234551 Consensus sequence: WAVBASCTGTCAAWVH Reverse complement motif 0.200615 0.171398 0.393437 0.234551 0.161376 0.204395 0.181067 0.453163 0.457378 0.090931 0.093796 0.357895 0.268288 0.022145 0.013657 0.695910 0.004002 0.001638 0.003159 0.991202 0.001451 0.002037 0.992789 0.003724 0.970323 0.004094 0.000241 0.025343 0.008422 0.989007 0.001124 0.001446 0.979831 0.018215 0.000406 0.001548 0.023801 0.008205 0.963424 0.004571 0.027829 0.505051 0.439935 0.027185 0.018297 0.005937 0.028595 0.947172 0.092373 0.360933 0.286687 0.260007 0.225875 0.280982 0.276028 0.217115 0.216841 0.060822 0.214256 0.508081 0.322056 0.114994 0.130835 0.432115 Consensus sequence: DBWTTGACAGSTBVTW Alignment: WAVBASCTGTCAAWVH --AAATCTTTYAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 21 Motif name: Motif 21 Original motif 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: ATAAAA Reserve complement motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: TTTTAT ************************************************************************ Best Matches for Motif ID 21 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00180 Hoxd13 Reverse Complement Reverse Complement Backward 7 6 0.000000 Species: Mus musculus Original motif 0.279189 0.316791 0.190404 0.213616 0.297705 0.175638 0.191020 0.335637 0.333485 0.203858 0.174034 0.288623 0.046444 0.540349 0.083237 0.329969 0.016780 0.648667 0.003870 0.330682 0.679959 0.116873 0.002745 0.200422 0.936496 0.002013 0.026876 0.034615 0.004741 0.008734 0.003861 0.982665 0.904624 0.000869 0.005345 0.089162 0.967883 0.002295 0.001003 0.028819 0.980087 0.004768 0.002887 0.012258 0.898523 0.041633 0.022776 0.037069 0.246903 0.292446 0.069240 0.391411 0.192528 0.300908 0.105655 0.400908 0.247610 0.343317 0.190760 0.218313 0.246702 0.253595 0.176298 0.323404 Consensus sequence: HDHYYAATAAAAHHHH Reverse complement motif 0.323404 0.253595 0.176298 0.246702 0.247610 0.190760 0.343317 0.218313 0.400908 0.300908 0.105655 0.192528 0.391411 0.292446 0.069240 0.246903 0.037069 0.041633 0.022776 0.898523 0.012258 0.004768 0.002887 0.980087 0.028819 0.002295 0.001003 0.967883 0.089162 0.000869 0.005345 0.904624 0.982665 0.008734 0.003861 0.004741 0.034615 0.002013 0.026876 0.936496 0.200422 0.116873 0.002745 0.679959 0.016780 0.003870 0.648667 0.330682 0.046444 0.083237 0.540349 0.329969 0.288623 0.203858 0.174034 0.333485 0.335637 0.175638 0.191020 0.297705 0.279189 0.190404 0.316791 0.213616 Consensus sequence: HDHHTTTTATTKKHDD Alignment: HDHHTTTTATTKKHDD ----TTTTAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00134 Hoxb13 Original Motif Original Motif Backward 5 6 0.009028 Species: Mus musculus Original motif 0.376100 0.272625 0.202253 0.149021 0.479072 0.116315 0.274952 0.129661 0.297412 0.328646 0.182054 0.191889 0.052067 0.771717 0.088083 0.088133 0.018222 0.666056 0.006952 0.308770 0.755568 0.122362 0.001339 0.120731 0.915413 0.001023 0.052340 0.031225 0.002612 0.028396 0.000695 0.968297 0.831092 0.001851 0.005615 0.161442 0.927869 0.001839 0.001169 0.069123 0.967747 0.009603 0.002871 0.019778 0.843186 0.073812 0.055868 0.027134 0.371084 0.143031 0.086222 0.399662 0.264976 0.212885 0.118960 0.403179 0.215633 0.345186 0.105518 0.333663 0.221910 0.297212 0.329310 0.151568 Consensus sequence: VRHCCAATAAAAWHHV Reverse complement motif 0.221910 0.329310 0.297212 0.151568 0.215633 0.105518 0.345186 0.333663 0.403179 0.212885 0.118960 0.264976 0.399662 0.143031 0.086222 0.371084 0.027134 0.073812 0.055868 0.843186 0.019778 0.009603 0.002871 0.967747 0.069123 0.001839 0.001169 0.927869 0.161442 0.001851 0.005615 0.831092 0.968297 0.028396 0.000695 0.002612 0.031225 0.001023 0.052340 0.915413 0.120731 0.122362 0.001339 0.755568 0.018222 0.006952 0.666056 0.308770 0.052067 0.088083 0.771717 0.088133 0.297412 0.182054 0.328646 0.191889 0.129661 0.116315 0.274952 0.479072 0.149021 0.272625 0.202253 0.376100 Consensus sequence: VDHWTTTTATTGGDKB Alignment: VRHCCAATAAAAWHHV ------ATAAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00207 Hoxb9 Original Motif Original Motif Backward 5 6 0.009090 Species: Mus musculus Original motif 0.369205 0.191401 0.373182 0.066211 0.357429 0.160246 0.408701 0.073624 0.576965 0.069294 0.310696 0.043045 0.103797 0.127691 0.646641 0.121871 0.023188 0.657132 0.005598 0.314082 0.420260 0.543925 0.009350 0.026464 0.944117 0.003851 0.047375 0.004658 0.007642 0.006158 0.004106 0.982094 0.728623 0.003283 0.002505 0.265589 0.958302 0.002642 0.002614 0.036442 0.969909 0.004265 0.002650 0.023176 0.869075 0.011516 0.028466 0.090943 0.336102 0.198102 0.075230 0.390566 0.203557 0.271818 0.098338 0.426287 0.226605 0.448090 0.146026 0.179278 0.252426 0.177812 0.357334 0.212429 Consensus sequence: VRRGCMATAAAAHHHD Reverse complement motif 0.252426 0.357334 0.177812 0.212429 0.226605 0.146026 0.448090 0.179278 0.426287 0.271818 0.098338 0.203557 0.390566 0.198102 0.075230 0.336102 0.090943 0.011516 0.028466 0.869075 0.023176 0.004265 0.002650 0.969909 0.036442 0.002642 0.002614 0.958302 0.265589 0.003283 0.002505 0.728623 0.982094 0.006158 0.004106 0.007642 0.004658 0.003851 0.047375 0.944117 0.420260 0.009350 0.543925 0.026464 0.023188 0.005598 0.657132 0.314082 0.103797 0.646641 0.127691 0.121871 0.043045 0.069294 0.310696 0.576965 0.357429 0.408701 0.160246 0.073624 0.369205 0.373182 0.191401 0.066211 Consensus sequence: HDHHTTTTATRGCKMV Alignment: VRRGCMATAAAAHHHD ------ATAAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00121 Hoxd10 Original Motif Original Motif Forward 7 6 0.014162 Species: Mus musculus Original motif 0.405345 0.293266 0.220907 0.080482 0.398063 0.099034 0.333525 0.169378 0.049753 0.190411 0.336789 0.423048 0.243698 0.226261 0.324346 0.205696 0.030873 0.549741 0.008321 0.411065 0.714225 0.228092 0.020960 0.036723 0.833992 0.010944 0.021918 0.133146 0.008898 0.026169 0.008341 0.956591 0.811684 0.004889 0.004751 0.178676 0.952107 0.004322 0.004587 0.038984 0.925365 0.008360 0.006811 0.059464 0.850659 0.058250 0.065237 0.025855 0.193369 0.242985 0.049515 0.514131 0.266774 0.080601 0.239781 0.412844 0.335522 0.125500 0.188170 0.350809 0.407171 0.120540 0.187300 0.284989 0.281181 0.242348 0.160247 0.316224 Consensus sequence: VDKVYAATAAAATDDDH Reverse complement motif 0.316224 0.242348 0.160247 0.281181 0.284989 0.120540 0.187300 0.407171 0.350809 0.125500 0.188170 0.335522 0.412844 0.080601 0.239781 0.266774 0.514131 0.242985 0.049515 0.193369 0.025855 0.058250 0.065237 0.850659 0.059464 0.008360 0.006811 0.925365 0.038984 0.004322 0.004587 0.952107 0.178676 0.004889 0.004751 0.811684 0.956591 0.026169 0.008341 0.008898 0.133146 0.010944 0.021918 0.833992 0.036723 0.228092 0.020960 0.714225 0.030873 0.008321 0.549741 0.411065 0.243698 0.324346 0.226261 0.205696 0.423048 0.190411 0.336789 0.049753 0.169378 0.099034 0.333525 0.398063 0.080482 0.293266 0.220907 0.405345 Consensus sequence: HDDDATTTTATTKVRDB Alignment: VDKVYAATAAAATDDDH ------ATAAAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00133 Cdx2 Reverse Complement Reverse Complement Backward 8 6 0.015662 Species: Mus musculus Original motif 0.314704 0.147028 0.248638 0.289630 0.358628 0.179740 0.325491 0.136141 0.298646 0.303363 0.300590 0.097401 0.188478 0.055557 0.664045 0.091921 0.171259 0.033449 0.790542 0.004751 0.002849 0.464940 0.000596 0.531615 0.576948 0.399193 0.001565 0.022295 0.968872 0.001511 0.028582 0.001035 0.006970 0.003535 0.000486 0.989010 0.878078 0.003399 0.000389 0.118134 0.951183 0.000842 0.001555 0.046419 0.939504 0.006021 0.000818 0.053657 0.567732 0.151536 0.050535 0.230197 0.172713 0.264434 0.122553 0.440299 0.142175 0.107265 0.258247 0.492313 0.215178 0.302818 0.133613 0.348391 Consensus sequence: DVVGGYMATAAAAHKH Reverse complement motif 0.348391 0.302818 0.133613 0.215178 0.492313 0.107265 0.258247 0.142175 0.440299 0.264434 0.122553 0.172713 0.230197 0.151536 0.050535 0.567732 0.053657 0.006021 0.000818 0.939504 0.046419 0.000842 0.001555 0.951183 0.118134 0.003399 0.000389 0.878078 0.989010 0.003535 0.000486 0.006970 0.001035 0.001511 0.028582 0.968872 0.022295 0.399193 0.001565 0.576948 0.531615 0.464940 0.000596 0.002849 0.171259 0.790542 0.033449 0.004751 0.188478 0.664045 0.055557 0.091921 0.298646 0.300590 0.303363 0.097401 0.136141 0.179740 0.325491 0.358628 0.289630 0.147028 0.248638 0.314704 Consensus sequence: HRHTTTTATYMCCVBD Alignment: HRHTTTTATYMCCVBD ---TTTTAT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 22 Motif name: Zfx Original motif 0.105042 0.371849 0.376050 0.147059 0.125786 0.356394 0.360587 0.157233 0.190377 0.315900 0.416318 0.077406 0.150313 0.102296 0.622129 0.125261 0.020790 0.617464 0.299376 0.062370 0.012474 0.752599 0.004158 0.230769 0.062370 0.259875 0.378378 0.299376 0.397089 0.320166 0.251559 0.031185 0.018711 0.004158 0.975052 0.002079 0.000000 0.006237 0.991684 0.002079 0.002079 0.997921 0.000000 0.000000 0.000000 0.997921 0.000000 0.002079 0.000000 0.004158 0.000000 0.995842 0.174636 0.253638 0.455301 0.116424 Consensus sequence: BBVGCCBVGGCCTV Reserve complement motif 0.174636 0.455301 0.253638 0.116424 0.995842 0.004158 0.000000 0.000000 0.000000 0.000000 0.997921 0.002079 0.002079 0.000000 0.997921 0.000000 0.000000 0.991684 0.006237 0.002079 0.018711 0.975052 0.004158 0.002079 0.031185 0.320166 0.251559 0.397089 0.062370 0.378378 0.259875 0.299376 0.012474 0.004158 0.752599 0.230769 0.020790 0.299376 0.617464 0.062370 0.150313 0.622129 0.102296 0.125261 0.190377 0.416318 0.315900 0.077406 0.125786 0.360587 0.356394 0.157233 0.105042 0.376050 0.371849 0.147059 Consensus sequence: VAGGCCBBGGCVBB ************************************************************************ Best Matches for Motif ID 22 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_secondary Original Motif Original Motif Forward 1 14 0.059614 Species: Mus musculus Original motif 0.198427 0.243196 0.159241 0.399136 0.267754 0.388187 0.116811 0.227248 0.448284 0.056403 0.414623 0.080691 0.031469 0.826323 0.055436 0.086772 0.035527 0.756642 0.022985 0.184845 0.127338 0.316078 0.155806 0.400778 0.135021 0.313650 0.287760 0.263570 0.418892 0.082297 0.068352 0.430460 0.201062 0.044735 0.711358 0.042845 0.038934 0.022320 0.903763 0.034982 0.201790 0.065554 0.460526 0.272130 0.006890 0.786923 0.061853 0.144334 0.460666 0.103658 0.196452 0.239224 0.092272 0.204611 0.390375 0.312742 Consensus sequence: HHRCCBBWGGDCDB Reverse complement motif 0.092272 0.390375 0.204611 0.312742 0.239224 0.103658 0.196452 0.460666 0.006890 0.061853 0.786923 0.144334 0.201790 0.460526 0.065554 0.272130 0.038934 0.903763 0.022320 0.034982 0.201062 0.711358 0.044735 0.042845 0.430460 0.082297 0.068352 0.418892 0.135021 0.287760 0.313650 0.263570 0.400778 0.316078 0.155806 0.127338 0.035527 0.022985 0.756642 0.184845 0.031469 0.055436 0.826323 0.086772 0.080691 0.056403 0.414623 0.448284 0.267754 0.116811 0.388187 0.227248 0.399136 0.243196 0.159241 0.198427 Consensus sequence: BDGHCCWBVGGKDH Alignment: HHRCCBBWGGDCDB BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primary Original Motif Original Motif Forward 1 14 0.060352 Species: Mus musculus Original motif 0.641428 0.180211 0.044767 0.133594 0.171696 0.262981 0.334148 0.231174 0.129726 0.322735 0.243462 0.304077 0.165713 0.175735 0.256108 0.402445 0.146090 0.171890 0.412753 0.269266 0.212837 0.439192 0.280990 0.066980 0.251088 0.275516 0.374380 0.099015 0.575438 0.079656 0.338201 0.006704 0.005634 0.003422 0.972597 0.018348 0.890447 0.077034 0.031851 0.000668 0.007128 0.986862 0.000496 0.005515 0.001445 0.991564 0.001925 0.005066 0.738761 0.190157 0.026399 0.044684 0.013384 0.983783 0.000896 0.001937 0.068077 0.929549 0.000773 0.001602 0.040830 0.933742 0.005283 0.020145 0.730274 0.029225 0.145689 0.094812 0.165032 0.572838 0.162001 0.100129 0.383584 0.129942 0.429497 0.056977 0.455959 0.071959 0.208204 0.263878 0.134271 0.262985 0.222626 0.380117 0.071193 0.346594 0.346081 0.236132 0.445661 0.405278 0.053901 0.095160 Consensus sequence: ABBBBVVRGACCACCCACRDBBM Reverse complement motif 0.095160 0.405278 0.053901 0.445661 0.071193 0.346081 0.346594 0.236132 0.380117 0.262985 0.222626 0.134271 0.263878 0.071959 0.208204 0.455959 0.383584 0.429497 0.129942 0.056977 0.165032 0.162001 0.572838 0.100129 0.094812 0.029225 0.145689 0.730274 0.040830 0.005283 0.933742 0.020145 0.068077 0.000773 0.929549 0.001602 0.013384 0.000896 0.983783 0.001937 0.044684 0.190157 0.026399 0.738761 0.001445 0.001925 0.991564 0.005066 0.007128 0.000496 0.986862 0.005515 0.000668 0.077034 0.031851 0.890447 0.005634 0.972597 0.003422 0.018348 0.006704 0.079656 0.338201 0.575438 0.251088 0.374380 0.275516 0.099015 0.212837 0.280990 0.439192 0.066980 0.146090 0.412753 0.171890 0.269266 0.402445 0.175735 0.256108 0.165713 0.129726 0.243462 0.322735 0.304077 0.171696 0.334148 0.262981 0.231174 0.133594 0.180211 0.044767 0.641428 Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT Alignment: ABBBBVVRGACCACCCACRDBBM BBVGCCBVGGCCTV--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Reverse Complement Original Motif Forward 4 14 0.060469 Species: Mus musculus Original motif 0.155386 0.223380 0.374454 0.246780 0.247106 0.159582 0.345111 0.248201 0.238889 0.258354 0.165304 0.337454 0.255612 0.489586 0.051621 0.203182 0.450100 0.545383 0.001071 0.003447 0.003704 0.991007 0.002456 0.002833 0.035504 0.001814 0.928129 0.034553 0.001494 0.991406 0.003414 0.003686 0.003045 0.990628 0.005182 0.001145 0.000990 0.963237 0.001215 0.034557 0.148016 0.838396 0.000666 0.012922 0.014261 0.905847 0.007200 0.072692 0.083394 0.270068 0.058368 0.588170 0.149141 0.286783 0.142802 0.421274 0.204851 0.347195 0.253356 0.194597 0.184442 0.299908 0.194408 0.321242 0.125793 0.380109 0.245318 0.248780 Consensus sequence: BDHHMCGCCCCCTHVBB Reverse complement motif 0.125793 0.245318 0.380109 0.248780 0.321242 0.299908 0.194408 0.184442 0.204851 0.253356 0.347195 0.194597 0.421274 0.286783 0.142802 0.149141 0.588170 0.270068 0.058368 0.083394 0.014261 0.007200 0.905847 0.072692 0.148016 0.000666 0.838396 0.012922 0.000990 0.001215 0.963237 0.034557 0.003045 0.005182 0.990628 0.001145 0.001494 0.003414 0.991406 0.003686 0.035504 0.928129 0.001814 0.034553 0.003704 0.002456 0.991007 0.002833 0.450100 0.001071 0.545383 0.003447 0.255612 0.051621 0.489586 0.203182 0.337454 0.258354 0.165304 0.238889 0.247106 0.345111 0.159582 0.248201 0.155386 0.374454 0.223380 0.246780 Consensus sequence: BVVHAGGGGGCGRDHHB Alignment: BDHHMCGCCCCCTHVBB ---VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Original Motif Backward 3 14 0.060607 Species: Mus musculus Original motif 0.204514 0.198353 0.171218 0.425915 0.167188 0.296785 0.246082 0.289946 0.267330 0.148001 0.398674 0.185994 0.549386 0.060167 0.337100 0.053347 0.050746 0.900013 0.022169 0.027073 0.037905 0.920332 0.008360 0.033403 0.410356 0.566702 0.016267 0.006675 0.009526 0.982354 0.001060 0.007060 0.204292 0.001084 0.748567 0.046056 0.003955 0.988490 0.002821 0.004735 0.004264 0.988826 0.004311 0.002598 0.002758 0.929549 0.001244 0.066448 0.260332 0.421683 0.024720 0.293265 0.184798 0.247697 0.085237 0.482268 0.347537 0.197344 0.139961 0.315159 0.255281 0.166620 0.242297 0.335802 Consensus sequence: HBDRCCMCGCCCHHHD Reverse complement motif 0.335802 0.166620 0.242297 0.255281 0.315159 0.197344 0.139961 0.347537 0.482268 0.247697 0.085237 0.184798 0.260332 0.024720 0.421683 0.293265 0.002758 0.001244 0.929549 0.066448 0.004264 0.004311 0.988826 0.002598 0.003955 0.002821 0.988490 0.004735 0.204292 0.748567 0.001084 0.046056 0.009526 0.001060 0.982354 0.007060 0.410356 0.016267 0.566702 0.006675 0.037905 0.008360 0.920332 0.033403 0.050746 0.022169 0.900013 0.027073 0.053347 0.060167 0.337100 0.549386 0.267330 0.398674 0.148001 0.185994 0.167188 0.246082 0.296785 0.289946 0.425915 0.198353 0.171218 0.204514 Consensus sequence: DHHDGGGCGRGGKHBH Alignment: HBDRCCMCGCCCHHHD BBVGCCBVGGCCTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Reverse Complement Original Motif Forward 9 14 0.060688 Species: Mus musculus Original motif 0.331499 0.188505 0.182841 0.297156 0.328961 0.213025 0.273530 0.184484 0.197213 0.129292 0.524914 0.148581 0.274491 0.226406 0.312118 0.186986 0.103231 0.393726 0.364988 0.138055 0.552594 0.166422 0.186262 0.094722 0.157618 0.064773 0.616497 0.161112 0.139166 0.176098 0.621185 0.063551 0.748420 0.062398 0.012447 0.176735 0.116584 0.009438 0.860326 0.013653 0.005030 0.003646 0.974877 0.016447 0.055257 0.007181 0.921760 0.015802 0.032748 0.058249 0.052709 0.856293 0.105606 0.872231 0.014370 0.007793 0.019480 0.497379 0.125899 0.357242 0.478582 0.269713 0.061464 0.190242 0.253985 0.287006 0.201320 0.257689 0.319384 0.210231 0.175842 0.294543 0.222123 0.287802 0.201294 0.288782 0.139951 0.376041 0.081133 0.402875 0.213450 0.343835 0.383676 0.059039 0.322294 0.355918 0.148062 0.173725 Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Reverse complement motif 0.322294 0.148062 0.355918 0.173725 0.213450 0.383676 0.343835 0.059039 0.402875 0.376041 0.081133 0.139951 0.288782 0.287802 0.201294 0.222123 0.294543 0.210231 0.175842 0.319384 0.253985 0.201320 0.287006 0.257689 0.190242 0.269713 0.061464 0.478582 0.019480 0.125899 0.497379 0.357242 0.105606 0.014370 0.872231 0.007793 0.856293 0.058249 0.052709 0.032748 0.055257 0.921760 0.007181 0.015802 0.005030 0.974877 0.003646 0.016447 0.116584 0.860326 0.009438 0.013653 0.176735 0.062398 0.012447 0.748420 0.139166 0.621185 0.176098 0.063551 0.157618 0.616497 0.064773 0.161112 0.094722 0.166422 0.186262 0.552594 0.103231 0.364988 0.393726 0.138055 0.274491 0.312118 0.226406 0.186986 0.197213 0.524914 0.129292 0.148581 0.184484 0.213025 0.273530 0.328961 0.297156 0.188505 0.182841 0.331499 Consensus sequence: DVMHHDHKGACCCTCCTSVCBH Alignment: HVGVSAGGAGGGTCYHHHHYVH --------VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 23 Motif name: Egr1 Original motif 0.200000 0.266667 0.066667 0.466667 0.133333 0.066667 0.800000 0.000000 0.000000 0.866667 0.000000 0.133333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.200000 0.800000 0.200000 0.000000 0.800000 0.000000 0.066667 0.000000 0.933333 0.000000 0.000000 0.000000 1.000000 0.000000 0.133333 0.666667 0.000000 0.200000 0.000000 0.000000 1.000000 0.000000 0.066667 0.000000 0.466667 0.466667 Consensus sequence: HGCGTGGGCGK Reserve complement motif 0.066667 0.466667 0.000000 0.466667 0.000000 1.000000 0.000000 0.000000 0.133333 0.000000 0.666667 0.200000 0.000000 1.000000 0.000000 0.000000 0.066667 0.933333 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 0.800000 0.000000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.866667 0.133333 0.133333 0.800000 0.066667 0.000000 0.466667 0.266667 0.066667 0.200000 Consensus sequence: YCGCCCACGCH ************************************************************************ Best Matches for Motif ID 23 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Reverse Complement Backward 7 11 0.000000 Species: Mus musculus Original motif 0.104824 0.412716 0.254506 0.227955 0.644922 0.065476 0.140479 0.149122 0.201205 0.166164 0.347131 0.285501 0.360606 0.256316 0.150766 0.232313 0.199831 0.240681 0.279350 0.280137 0.234308 0.204076 0.321306 0.240310 0.274112 0.462435 0.111425 0.152028 0.067070 0.717501 0.073934 0.141496 0.106745 0.084442 0.658566 0.150247 0.025128 0.967053 0.003585 0.004234 0.006412 0.982989 0.003227 0.007371 0.009588 0.877620 0.002571 0.110221 0.621521 0.355443 0.015669 0.007366 0.002600 0.980275 0.004191 0.012934 0.118773 0.026658 0.783843 0.070725 0.022358 0.822101 0.024684 0.130857 0.713212 0.080912 0.128793 0.077084 0.166568 0.250955 0.107934 0.474544 0.225040 0.222494 0.163301 0.389166 0.268976 0.223206 0.265314 0.242504 0.137052 0.229058 0.148439 0.485451 0.135819 0.304550 0.141994 0.417637 0.272440 0.319501 0.230580 0.177478 Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Reverse complement motif 0.272440 0.230580 0.319501 0.177478 0.417637 0.304550 0.141994 0.135819 0.485451 0.229058 0.148439 0.137052 0.242504 0.223206 0.265314 0.268976 0.389166 0.222494 0.163301 0.225040 0.474544 0.250955 0.107934 0.166568 0.077084 0.080912 0.128793 0.713212 0.022358 0.024684 0.822101 0.130857 0.118773 0.783843 0.026658 0.070725 0.002600 0.004191 0.980275 0.012934 0.007366 0.355443 0.015669 0.621521 0.009588 0.002571 0.877620 0.110221 0.006412 0.003227 0.982989 0.007371 0.025128 0.003585 0.967053 0.004234 0.106745 0.658566 0.084442 0.150247 0.067070 0.073934 0.717501 0.141496 0.274112 0.111425 0.462435 0.152028 0.234308 0.321306 0.204076 0.240310 0.280137 0.240681 0.279350 0.199831 0.232313 0.256316 0.150766 0.360606 0.201205 0.347131 0.166164 0.285501 0.149122 0.065476 0.140479 0.644922 0.104824 0.254506 0.412716 0.227955 Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB ------HGCGTGGGCGK------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Reverse Complement Original Motif Backward 3 11 0.007275 Species: Mus musculus Original motif 0.211547 0.282708 0.203472 0.302273 0.141988 0.722437 0.054854 0.080721 0.032605 0.877172 0.012432 0.077792 0.115126 0.070606 0.781290 0.032979 0.003516 0.990021 0.002265 0.004198 0.004715 0.982482 0.009897 0.002906 0.001627 0.975937 0.001662 0.020774 0.262352 0.731732 0.002730 0.003187 0.005890 0.985756 0.002081 0.006273 0.022893 0.090460 0.649322 0.237324 0.023038 0.859949 0.037913 0.079101 0.567633 0.057394 0.166792 0.208181 0.176597 0.331265 0.125308 0.366830 0.183049 0.183774 0.226793 0.406384 Consensus sequence: HCCGCCCCCGCAHB Reverse complement motif 0.406384 0.183774 0.226793 0.183049 0.366830 0.331265 0.125308 0.176597 0.208181 0.057394 0.166792 0.567633 0.023038 0.037913 0.859949 0.079101 0.022893 0.649322 0.090460 0.237324 0.005890 0.002081 0.985756 0.006273 0.262352 0.002730 0.731732 0.003187 0.001627 0.001662 0.975937 0.020774 0.004715 0.009897 0.982482 0.002906 0.003516 0.002265 0.990021 0.004198 0.115126 0.781290 0.070606 0.032979 0.032605 0.012432 0.877172 0.077792 0.141988 0.054854 0.722437 0.080721 0.302273 0.282708 0.203472 0.211547 Consensus sequence: VHTGCGGGGGCGGH Alignment: HCCGCCCCCGCAHB -YCGCCCACGCH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Reverse Complement Original Motif Backward 4 11 0.026258 Species: Mus musculus Original motif 0.404007 0.395873 0.173319 0.026801 0.305977 0.215534 0.215359 0.263130 0.370148 0.250957 0.113088 0.265808 0.324336 0.229498 0.174679 0.271487 0.263563 0.137896 0.079217 0.519324 0.265762 0.222582 0.082555 0.429102 0.206721 0.288405 0.017851 0.487023 0.164361 0.236500 0.061051 0.538088 0.593344 0.348446 0.050304 0.007906 0.031328 0.947050 0.007032 0.014590 0.010428 0.956605 0.029142 0.003825 0.459636 0.207616 0.155368 0.177380 0.014573 0.964608 0.012209 0.008610 0.066291 0.918196 0.008729 0.006784 0.019488 0.866774 0.018897 0.094841 0.767405 0.104198 0.029234 0.099164 0.052494 0.772531 0.039832 0.135142 0.296085 0.243498 0.350935 0.109482 0.518843 0.226659 0.124784 0.129714 0.647901 0.019721 0.159901 0.172477 0.113912 0.231511 0.214864 0.439713 0.223117 0.310596 0.293328 0.172959 0.185557 0.487662 0.136321 0.190459 Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Reverse complement motif 0.185557 0.136321 0.487662 0.190459 0.223117 0.293328 0.310596 0.172959 0.439713 0.231511 0.214864 0.113912 0.172477 0.019721 0.159901 0.647901 0.129714 0.226659 0.124784 0.518843 0.296085 0.350935 0.243498 0.109482 0.052494 0.039832 0.772531 0.135142 0.099164 0.104198 0.029234 0.767405 0.019488 0.018897 0.866774 0.094841 0.066291 0.008729 0.918196 0.006784 0.014573 0.012209 0.964608 0.008610 0.177380 0.207616 0.155368 0.459636 0.010428 0.029142 0.956605 0.003825 0.031328 0.007032 0.947050 0.014590 0.007906 0.348446 0.050304 0.593344 0.538088 0.236500 0.061051 0.164361 0.487023 0.288405 0.017851 0.206721 0.429102 0.222582 0.082555 0.265762 0.519324 0.137896 0.079217 0.263563 0.271487 0.229498 0.174679 0.324336 0.265808 0.250957 0.113088 0.370148 0.263130 0.215534 0.215359 0.305977 0.026801 0.395873 0.173319 0.404007 Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH ---------YCGCCCACGCH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primary Original Motif Reverse Complement Backward 11 11 0.029705 Species: Mus musculus Original motif 0.641428 0.180211 0.044767 0.133594 0.171696 0.262981 0.334148 0.231174 0.129726 0.322735 0.243462 0.304077 0.165713 0.175735 0.256108 0.402445 0.146090 0.171890 0.412753 0.269266 0.212837 0.439192 0.280990 0.066980 0.251088 0.275516 0.374380 0.099015 0.575438 0.079656 0.338201 0.006704 0.005634 0.003422 0.972597 0.018348 0.890447 0.077034 0.031851 0.000668 0.007128 0.986862 0.000496 0.005515 0.001445 0.991564 0.001925 0.005066 0.738761 0.190157 0.026399 0.044684 0.013384 0.983783 0.000896 0.001937 0.068077 0.929549 0.000773 0.001602 0.040830 0.933742 0.005283 0.020145 0.730274 0.029225 0.145689 0.094812 0.165032 0.572838 0.162001 0.100129 0.383584 0.129942 0.429497 0.056977 0.455959 0.071959 0.208204 0.263878 0.134271 0.262985 0.222626 0.380117 0.071193 0.346594 0.346081 0.236132 0.445661 0.405278 0.053901 0.095160 Consensus sequence: ABBBBVVRGACCACCCACRDBBM Reverse complement motif 0.095160 0.405278 0.053901 0.445661 0.071193 0.346081 0.346594 0.236132 0.380117 0.262985 0.222626 0.134271 0.263878 0.071959 0.208204 0.455959 0.383584 0.429497 0.129942 0.056977 0.165032 0.162001 0.572838 0.100129 0.094812 0.029225 0.145689 0.730274 0.040830 0.005283 0.933742 0.020145 0.068077 0.000773 0.929549 0.001602 0.013384 0.000896 0.983783 0.001937 0.044684 0.190157 0.026399 0.738761 0.001445 0.001925 0.991564 0.005066 0.007128 0.000496 0.986862 0.005515 0.000668 0.077034 0.031851 0.890447 0.005634 0.972597 0.003422 0.018348 0.006704 0.079656 0.338201 0.575438 0.251088 0.374380 0.275516 0.099015 0.212837 0.280990 0.439192 0.066980 0.146090 0.412753 0.171890 0.269266 0.402445 0.175735 0.256108 0.165713 0.129726 0.243462 0.322735 0.304077 0.171696 0.334148 0.262981 0.231174 0.133594 0.180211 0.044767 0.641428 Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT Alignment: YBVDMGTGGGTGGTCKVVBVBBT --HGCGTGGGCGK---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Original Motif Original Motif Forward 5 11 0.031814 Species: Mus musculus Original motif 0.319838 0.171199 0.138099 0.370865 0.269358 0.196600 0.346909 0.187133 0.176807 0.338888 0.193903 0.290402 0.230268 0.119645 0.310500 0.339587 0.517372 0.257658 0.111673 0.113296 0.159477 0.126524 0.561119 0.152879 0.117072 0.553013 0.130919 0.198996 0.073372 0.163548 0.525014 0.238066 0.143608 0.186896 0.170528 0.498967 0.054943 0.079034 0.722992 0.143031 0.048852 0.015134 0.852458 0.083556 0.029001 0.023938 0.918900 0.028160 0.036727 0.092645 0.090591 0.780037 0.017757 0.057598 0.895222 0.029423 0.026113 0.048113 0.879744 0.046030 0.023041 0.787043 0.123490 0.066426 0.579766 0.004868 0.296873 0.118493 0.303862 0.042931 0.290151 0.363055 0.099672 0.237431 0.262301 0.400597 0.217788 0.163908 0.367628 0.250676 0.450783 0.141108 0.226137 0.181972 0.485086 0.102553 0.242662 0.169700 0.109057 0.454222 0.145665 0.291056 Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Reverse complement motif 0.109057 0.145665 0.454222 0.291056 0.169700 0.102553 0.242662 0.485086 0.181972 0.141108 0.226137 0.450783 0.217788 0.367628 0.163908 0.250676 0.400597 0.237431 0.262301 0.099672 0.363055 0.042931 0.290151 0.303862 0.118493 0.004868 0.296873 0.579766 0.023041 0.123490 0.787043 0.066426 0.026113 0.879744 0.048113 0.046030 0.017757 0.895222 0.057598 0.029423 0.780037 0.092645 0.090591 0.036727 0.029001 0.918900 0.023938 0.028160 0.048852 0.852458 0.015134 0.083556 0.054943 0.722992 0.079034 0.143031 0.498967 0.186896 0.170528 0.143608 0.073372 0.525014 0.163548 0.238066 0.117072 0.130919 0.553013 0.198996 0.159477 0.561119 0.126524 0.152879 0.113296 0.257658 0.111673 0.517372 0.339587 0.119645 0.310500 0.230268 0.176807 0.193903 0.338888 0.290402 0.269358 0.346909 0.196600 0.187133 0.370865 0.171199 0.138099 0.319838 Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB ----HGCGTGGGCGK-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 24 Motif name: SP1 Original motif 0.000000 0.914286 0.028571 0.057143 0.000000 0.857143 0.028571 0.114286 0.000000 1.000000 0.000000 0.000000 0.114286 0.771429 0.000000 0.114286 0.057143 0.142857 0.428571 0.371429 0.000000 0.800000 0.028571 0.171429 0.028571 0.885714 0.000000 0.085714 0.000000 0.685714 0.085714 0.228571 0.171429 0.714286 0.000000 0.114286 0.085714 0.742857 0.085714 0.085714 Consensus sequence: CCCCKCCCCC Reserve complement motif 0.085714 0.085714 0.742857 0.085714 0.171429 0.000000 0.714286 0.114286 0.000000 0.085714 0.685714 0.228571 0.028571 0.000000 0.885714 0.085714 0.000000 0.028571 0.800000 0.171429 0.057143 0.428571 0.142857 0.371429 0.114286 0.000000 0.771429 0.114286 0.000000 0.000000 1.000000 0.000000 0.000000 0.028571 0.857143 0.114286 0.000000 0.028571 0.914286 0.057143 Consensus sequence: GGGGGYGGGG ************************************************************************ Best Matches for Motif ID 24 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Original Motif Original Motif Backward 4 10 0.023102 Species: Mus musculus Original motif 0.201535 0.165213 0.201324 0.431929 0.136153 0.443451 0.179132 0.241264 0.263149 0.555137 0.067983 0.113731 0.142183 0.737634 0.045722 0.074461 0.044982 0.884112 0.045356 0.025549 0.246434 0.590578 0.022655 0.140333 0.123049 0.591257 0.033072 0.252622 0.018153 0.944742 0.010254 0.026851 0.035459 0.953844 0.003988 0.006709 0.020000 0.954344 0.005966 0.019690 0.015299 0.964390 0.006755 0.013557 0.028565 0.936152 0.011660 0.023623 0.300127 0.517309 0.029700 0.152863 0.159063 0.513443 0.051834 0.275660 0.158172 0.647055 0.133256 0.061516 Consensus sequence: DBCCCCCCCCCCMYC Reverse complement motif 0.158172 0.133256 0.647055 0.061516 0.159063 0.051834 0.513443 0.275660 0.300127 0.029700 0.517309 0.152863 0.028565 0.011660 0.936152 0.023623 0.015299 0.006755 0.964390 0.013557 0.020000 0.005966 0.954344 0.019690 0.035459 0.003988 0.953844 0.006709 0.018153 0.010254 0.944742 0.026851 0.123049 0.033072 0.591257 0.252622 0.246434 0.022655 0.590578 0.140333 0.044982 0.045356 0.884112 0.025549 0.142183 0.045722 0.737634 0.074461 0.263149 0.067983 0.555137 0.113731 0.136153 0.179132 0.443451 0.241264 0.431929 0.165213 0.201324 0.201535 Consensus sequence: GKRGGGGGGGGGGBD Alignment: DBCCCCCCCCCCMYC --CCCCKCCCCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Original Motif Backward 3 10 0.030321 Species: Mus musculus Original motif 0.204514 0.198353 0.171218 0.425915 0.167188 0.296785 0.246082 0.289946 0.267330 0.148001 0.398674 0.185994 0.549386 0.060167 0.337100 0.053347 0.050746 0.900013 0.022169 0.027073 0.037905 0.920332 0.008360 0.033403 0.410356 0.566702 0.016267 0.006675 0.009526 0.982354 0.001060 0.007060 0.204292 0.001084 0.748567 0.046056 0.003955 0.988490 0.002821 0.004735 0.004264 0.988826 0.004311 0.002598 0.002758 0.929549 0.001244 0.066448 0.260332 0.421683 0.024720 0.293265 0.184798 0.247697 0.085237 0.482268 0.347537 0.197344 0.139961 0.315159 0.255281 0.166620 0.242297 0.335802 Consensus sequence: HBDRCCMCGCCCHHHD Reverse complement motif 0.335802 0.166620 0.242297 0.255281 0.315159 0.197344 0.139961 0.347537 0.482268 0.247697 0.085237 0.184798 0.260332 0.024720 0.421683 0.293265 0.002758 0.001244 0.929549 0.066448 0.004264 0.004311 0.988826 0.002598 0.003955 0.002821 0.988490 0.004735 0.204292 0.748567 0.001084 0.046056 0.009526 0.001060 0.982354 0.007060 0.410356 0.016267 0.566702 0.006675 0.037905 0.008360 0.920332 0.033403 0.050746 0.022169 0.900013 0.027073 0.053347 0.060167 0.337100 0.549386 0.267330 0.398674 0.148001 0.185994 0.167188 0.246082 0.296785 0.289946 0.425915 0.198353 0.171218 0.204514 Consensus sequence: DHHDGGGCGRGGKHBH Alignment: HBDRCCMCGCCCHHHD ----CCCCKCCCCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondary Reverse Complement Reverse Complement Forward 5 10 0.032301 Species: Mus musculus Original motif 0.162979 0.284781 0.237433 0.314807 0.182449 0.447584 0.069464 0.300502 0.298973 0.261014 0.213211 0.226802 0.136039 0.433062 0.144274 0.286625 0.180084 0.395933 0.158565 0.265418 0.069354 0.748510 0.068898 0.113238 0.060485 0.717828 0.075333 0.146354 0.023280 0.071762 0.645500 0.259457 0.166896 0.749762 0.062730 0.020612 0.050401 0.775248 0.089072 0.085279 0.103847 0.767557 0.068804 0.059791 0.064815 0.748318 0.114588 0.072280 0.340921 0.071942 0.242981 0.344157 0.301967 0.263512 0.165927 0.268594 0.479800 0.222955 0.118441 0.178803 0.229469 0.283621 0.143099 0.343811 0.261733 0.180191 0.169905 0.388170 Consensus sequence: BHHBHCCGCCCCDHHHH Reverse complement motif 0.388170 0.180191 0.169905 0.261733 0.343811 0.283621 0.143099 0.229469 0.178803 0.222955 0.118441 0.479800 0.268594 0.263512 0.165927 0.301967 0.344157 0.071942 0.242981 0.340921 0.064815 0.114588 0.748318 0.072280 0.103847 0.068804 0.767557 0.059791 0.050401 0.089072 0.775248 0.085279 0.166896 0.062730 0.749762 0.020612 0.023280 0.645500 0.071762 0.259457 0.060485 0.075333 0.717828 0.146354 0.069354 0.068898 0.748510 0.113238 0.180084 0.158565 0.395933 0.265418 0.136039 0.144274 0.433062 0.286625 0.226802 0.261014 0.213211 0.298973 0.182449 0.069464 0.447584 0.300502 0.314807 0.284781 0.237433 0.162979 Consensus sequence: HHHHDGGGGCGGDBHDV Alignment: HHHHDGGGGCGGDBHDV ----GGGGGYGGGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_secondary Reverse Complement Reverse Complement Forward 3 10 0.034097 Species: Mus musculus Original motif 0.114462 0.345602 0.289353 0.250583 0.192593 0.250844 0.116250 0.440313 0.338838 0.304929 0.195843 0.160390 0.312051 0.115094 0.162465 0.410390 0.143975 0.600492 0.123348 0.132185 0.078751 0.715072 0.135182 0.070995 0.146191 0.685571 0.069799 0.098439 0.137287 0.646078 0.126428 0.090207 0.335099 0.092260 0.371510 0.201131 0.033090 0.631176 0.074278 0.261456 0.117516 0.619336 0.100946 0.162202 0.114769 0.627362 0.089839 0.168031 0.195787 0.252057 0.220803 0.331353 0.415355 0.120731 0.281372 0.182542 0.111178 0.217079 0.245769 0.425974 0.191517 0.296952 0.153370 0.358162 Consensus sequence: BHVDCCCCDCCCBDBH Reverse complement motif 0.358162 0.296952 0.153370 0.191517 0.425974 0.217079 0.245769 0.111178 0.182542 0.120731 0.281372 0.415355 0.331353 0.252057 0.220803 0.195787 0.114769 0.089839 0.627362 0.168031 0.117516 0.100946 0.619336 0.162202 0.033090 0.074278 0.631176 0.261456 0.335099 0.371510 0.092260 0.201131 0.137287 0.126428 0.646078 0.090207 0.146191 0.069799 0.685571 0.098439 0.078751 0.135182 0.715072 0.070995 0.143975 0.123348 0.600492 0.132185 0.410390 0.115094 0.162465 0.312051 0.160390 0.304929 0.195843 0.338838 0.440313 0.250844 0.116250 0.192593 0.114462 0.289353 0.345602 0.250583 Consensus sequence: HVDVGGGHGGGGDBHB Alignment: HVDVGGGHGGGGDBHB --GGGGGYGGGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_secondary Reverse Complement Reverse Complement Backward 3 10 0.035105 Species: Mus musculus Original motif 0.316572 0.278382 0.152556 0.252490 0.167141 0.257034 0.259894 0.315931 0.175523 0.325956 0.259996 0.238525 0.165052 0.385677 0.239449 0.209822 0.069489 0.782718 0.072454 0.075339 0.049943 0.800636 0.031988 0.117433 0.223382 0.060306 0.552691 0.163621 0.072944 0.818252 0.034406 0.074398 0.070535 0.845127 0.062712 0.021626 0.031035 0.859354 0.055424 0.054187 0.063668 0.798503 0.067274 0.070554 0.348488 0.030697 0.197179 0.423636 0.307220 0.256470 0.181009 0.255301 0.460933 0.285057 0.090258 0.163752 0.315798 0.228431 0.171135 0.284637 0.374527 0.268328 0.198810 0.158335 Consensus sequence: HBBBCCGCCCCWHHHV Reverse complement motif 0.158335 0.268328 0.198810 0.374527 0.284637 0.228431 0.171135 0.315798 0.163752 0.285057 0.090258 0.460933 0.255301 0.256470 0.181009 0.307220 0.423636 0.030697 0.197179 0.348488 0.063668 0.067274 0.798503 0.070554 0.031035 0.055424 0.859354 0.054187 0.070535 0.062712 0.845127 0.021626 0.072944 0.034406 0.818252 0.074398 0.223382 0.552691 0.060306 0.163621 0.049943 0.031988 0.800636 0.117433 0.069489 0.072454 0.782718 0.075339 0.165052 0.239449 0.385677 0.209822 0.175523 0.259996 0.325956 0.238525 0.315931 0.257034 0.259894 0.167141 0.252490 0.278382 0.152556 0.316572 Consensus sequence: BHHHWGGGGCGGBBVH Alignment: BHHHWGGGGCGGBBVH ----GGGGGYGGGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 25 Motif name: TFAP2A Original motif 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.118919 0.383784 0.248649 0.248649 0.102703 0.308108 0.329730 0.259459 0.297297 0.237838 0.362162 0.102703 0.286486 0.162162 0.491892 0.059459 0.102703 0.086486 0.740541 0.070270 0.048649 0.421622 0.427027 0.102703 Consensus sequence: GCCBBVRGS Reserve complement motif 0.048649 0.427027 0.421622 0.102703 0.102703 0.740541 0.086486 0.070270 0.286486 0.491892 0.162162 0.059459 0.297297 0.362162 0.237838 0.102703 0.102703 0.329730 0.308108 0.259459 0.118919 0.248649 0.383784 0.248649 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 Consensus sequence: SCMVBBGGC ************************************************************************ Best Matches for Motif ID 25 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00010 Tcfap2b_secondary Original Motif Reverse Complement Forward 4 9 0.011555 Species: Mus musculus Original motif 0.325895 0.099601 0.286848 0.287657 0.177095 0.035123 0.260876 0.526906 0.344850 0.211117 0.015725 0.428308 0.128363 0.059965 0.777560 0.034112 0.048072 0.881624 0.024842 0.045462 0.072628 0.872650 0.011271 0.043451 0.057165 0.162157 0.347719 0.432959 0.015437 0.448405 0.428425 0.107733 0.446877 0.336374 0.099940 0.116809 0.090955 0.023004 0.848240 0.037801 0.040151 0.015072 0.901303 0.043473 0.087378 0.817019 0.027876 0.067727 0.532482 0.021469 0.266773 0.179276 0.325017 0.271661 0.138860 0.264463 0.203625 0.179490 0.143885 0.473001 Consensus sequence: DTWGCCKSMGGCRHH Reverse complement motif 0.473001 0.179490 0.143885 0.203625 0.264463 0.271661 0.138860 0.325017 0.179276 0.021469 0.266773 0.532482 0.087378 0.027876 0.817019 0.067727 0.040151 0.901303 0.015072 0.043473 0.090955 0.848240 0.023004 0.037801 0.116809 0.336374 0.099940 0.446877 0.015437 0.428425 0.448405 0.107733 0.432959 0.162157 0.347719 0.057165 0.072628 0.011271 0.872650 0.043451 0.048072 0.024842 0.881624 0.045462 0.128363 0.777560 0.059965 0.034112 0.428308 0.211117 0.015725 0.344850 0.526906 0.035123 0.260876 0.177095 0.287657 0.099601 0.286848 0.325895 Consensus sequence: HHKGCCYSRGGCWAD Alignment: HHKGCCYSRGGCWAD ---GCCBBVRGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00010 Tcfap2b_primary Original Motif Original Motif Forward 3 9 0.015045 Species: Mus musculus Original motif 0.241622 0.134036 0.195946 0.428396 0.170161 0.349277 0.064019 0.416543 0.037533 0.228173 0.717601 0.016693 0.007604 0.927737 0.058613 0.006046 0.002996 0.965706 0.002874 0.028425 0.004745 0.626301 0.026069 0.342885 0.022194 0.291409 0.272335 0.414062 0.589759 0.136946 0.247468 0.025828 0.342885 0.026069 0.626301 0.004745 0.028425 0.002874 0.965706 0.002996 0.006046 0.058613 0.927737 0.007604 0.016693 0.717601 0.228173 0.037533 0.664950 0.075306 0.151047 0.108696 0.315138 0.174615 0.172322 0.337924 Consensus sequence: DYGCCYBARGGCAH Reverse complement motif 0.337924 0.174615 0.172322 0.315138 0.108696 0.075306 0.151047 0.664950 0.016693 0.228173 0.717601 0.037533 0.006046 0.927737 0.058613 0.007604 0.028425 0.965706 0.002874 0.002996 0.342885 0.626301 0.026069 0.004745 0.025828 0.136946 0.247468 0.589759 0.414062 0.291409 0.272335 0.022194 0.004745 0.026069 0.626301 0.342885 0.002996 0.002874 0.965706 0.028425 0.007604 0.058613 0.927737 0.006046 0.037533 0.717601 0.228173 0.016693 0.416543 0.349277 0.064019 0.170161 0.428396 0.134036 0.195946 0.241622 Consensus sequence: HTGCCMTVKGGCMD Alignment: DYGCCYBARGGCAH --GCCBBVRGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_primary Original Motif Original Motif Forward 4 9 0.015153 Species: Mus musculus Original motif 0.422613 0.103833 0.119614 0.353939 0.249412 0.169205 0.202313 0.379071 0.229443 0.231233 0.068690 0.470634 0.013814 0.501744 0.463635 0.020806 0.006744 0.985507 0.003252 0.004497 0.001758 0.859562 0.001396 0.137285 0.005460 0.315890 0.186790 0.491861 0.040326 0.375312 0.497433 0.086929 0.491861 0.186790 0.315890 0.005460 0.137285 0.001396 0.859562 0.001758 0.004497 0.003252 0.985507 0.006744 0.020806 0.463635 0.501744 0.013814 0.348377 0.094358 0.419593 0.137673 0.559411 0.134625 0.133295 0.172668 0.331903 0.197670 0.240404 0.230023 Consensus sequence: WDHSCCYSRGGSRAD Reverse complement motif 0.230023 0.197670 0.240404 0.331903 0.172668 0.134625 0.133295 0.559411 0.348377 0.419593 0.094358 0.137673 0.020806 0.501744 0.463635 0.013814 0.004497 0.985507 0.003252 0.006744 0.137285 0.859562 0.001396 0.001758 0.005460 0.186790 0.315890 0.491861 0.040326 0.497433 0.375312 0.086929 0.491861 0.315890 0.186790 0.005460 0.001758 0.001396 0.859562 0.137285 0.006744 0.003252 0.985507 0.004497 0.013814 0.463635 0.501744 0.020806 0.470634 0.231233 0.068690 0.229443 0.379071 0.169205 0.202313 0.249412 0.353939 0.103833 0.119614 0.422613 Consensus sequence: DTMSCCKSMGGSHDW Alignment: WDHSCCYSRGGSRAD ---GCCBBVRGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00087 Tcfap2c_primary Original Motif Original Motif Backward 4 9 0.016909 Species: Mus musculus Original motif 0.453894 0.104785 0.095366 0.345954 0.232091 0.189298 0.180541 0.398071 0.233238 0.261214 0.065556 0.439992 0.012319 0.459636 0.511133 0.016912 0.008159 0.984661 0.002866 0.004314 0.001420 0.885962 0.001808 0.110810 0.005689 0.345363 0.111901 0.537046 0.035614 0.353586 0.534122 0.076679 0.537046 0.111901 0.345363 0.005689 0.110810 0.001808 0.885962 0.001420 0.004314 0.002866 0.984661 0.008159 0.016912 0.511133 0.459636 0.012319 0.313235 0.097541 0.435018 0.154206 0.570019 0.140594 0.123600 0.165788 0.326417 0.176576 0.220289 0.276718 Consensus sequence: WHHSCCYSRGGSDAD Reverse complement motif 0.276718 0.176576 0.220289 0.326417 0.165788 0.140594 0.123600 0.570019 0.313235 0.435018 0.097541 0.154206 0.016912 0.459636 0.511133 0.012319 0.004314 0.984661 0.002866 0.008159 0.110810 0.885962 0.001808 0.001420 0.005689 0.111901 0.345363 0.537046 0.035614 0.534122 0.353586 0.076679 0.537046 0.345363 0.111901 0.005689 0.001420 0.001808 0.885962 0.110810 0.008159 0.002866 0.984661 0.004314 0.012319 0.511133 0.459636 0.016912 0.439992 0.261214 0.065556 0.233238 0.398071 0.189298 0.180541 0.232091 0.345954 0.104785 0.095366 0.453894 Consensus sequence: DTHSCCKSMGGSHHW Alignment: WHHSCCYSRGGSDAD ---GCCBBVRGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00087 Tcfap2c_secondary Original Motif Original Motif Forward 3 9 0.017026 Species: Mus musculus Original motif 0.203043 0.348071 0.227399 0.221487 0.179291 0.396392 0.144383 0.279934 0.093421 0.033540 0.859005 0.014034 0.181373 0.693724 0.031481 0.093422 0.019065 0.840720 0.011622 0.128593 0.197421 0.501100 0.087606 0.213873 0.457286 0.063305 0.239499 0.239911 0.508984 0.143325 0.116228 0.231463 0.213873 0.087606 0.501100 0.197421 0.128593 0.011622 0.840720 0.019065 0.093422 0.031481 0.693724 0.181373 0.014034 0.859005 0.033540 0.093421 0.477741 0.059425 0.165356 0.297478 0.278658 0.136011 0.311291 0.274039 Consensus sequence: BHGCCCDAGGGCWD Reverse complement motif 0.278658 0.311291 0.136011 0.274039 0.297478 0.059425 0.165356 0.477741 0.014034 0.033540 0.859005 0.093421 0.093422 0.693724 0.031481 0.181373 0.128593 0.840720 0.011622 0.019065 0.213873 0.501100 0.087606 0.197421 0.231463 0.143325 0.116228 0.508984 0.239911 0.063305 0.239499 0.457286 0.197421 0.087606 0.501100 0.213873 0.019065 0.011622 0.840720 0.128593 0.181373 0.031481 0.693724 0.093422 0.093421 0.859005 0.033540 0.014034 0.179291 0.144383 0.396392 0.279934 0.203043 0.227399 0.348071 0.221487 Consensus sequence: HWGCCCTDGGGCDB Alignment: BHGCCCDAGGGCWD --GCCBBVRGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 26 Motif name: MIZF Original motif 0.100000 0.300000 0.250000 0.350000 0.650000 0.050000 0.000000 0.300000 1.000000 0.000000 0.000000 0.000000 0.100000 0.850000 0.050000 0.000000 0.000000 0.000000 0.950000 0.050000 0.000000 0.050000 0.000000 0.950000 0.000000 0.950000 0.000000 0.050000 0.000000 0.900000 0.100000 0.000000 0.000000 0.000000 0.950000 0.050000 0.100000 0.650000 0.050000 0.200000 Consensus sequence: BAACGTCCGC Reserve complement motif 0.100000 0.050000 0.650000 0.200000 0.000000 0.950000 0.000000 0.050000 0.000000 0.100000 0.900000 0.000000 0.000000 0.000000 0.950000 0.050000 0.950000 0.050000 0.000000 0.000000 0.000000 0.950000 0.000000 0.050000 0.100000 0.050000 0.850000 0.000000 0.000000 0.000000 0.000000 1.000000 0.300000 0.050000 0.000000 0.650000 0.350000 0.300000 0.250000 0.100000 Consensus sequence: GCGGACGTTV ************************************************************************ Best Matches for Motif ID 26 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00419 Spic Original Motif Reverse Complement Forward 1 10 0.000000 Species: Mus musculus Original motif 0.372554 0.181557 0.296001 0.149888 0.734552 0.057250 0.044752 0.163446 0.707604 0.045049 0.110341 0.137006 0.637848 0.057252 0.071934 0.232966 0.125449 0.108933 0.689441 0.076176 0.266215 0.517339 0.207018 0.009428 0.015016 0.002582 0.979670 0.002732 0.004303 0.002322 0.989973 0.003401 0.982327 0.003552 0.003393 0.010727 0.974155 0.001662 0.003294 0.020889 0.040023 0.128522 0.821560 0.009894 0.027635 0.045828 0.016297 0.910239 0.317500 0.045635 0.172234 0.464631 0.342838 0.107812 0.284775 0.264576 Consensus sequence: VAAAGMGGAAGTWD Reverse complement motif 0.264576 0.107812 0.284775 0.342838 0.464631 0.045635 0.172234 0.317500 0.910239 0.045828 0.016297 0.027635 0.040023 0.821560 0.128522 0.009894 0.020889 0.001662 0.003294 0.974155 0.010727 0.003552 0.003393 0.982327 0.004303 0.989973 0.002322 0.003401 0.015016 0.979670 0.002582 0.002732 0.266215 0.207018 0.517339 0.009428 0.125449 0.689441 0.108933 0.076176 0.232966 0.057252 0.071934 0.637848 0.137006 0.045049 0.110341 0.707604 0.163446 0.057250 0.044752 0.734552 0.149888 0.181557 0.296001 0.372554 Consensus sequence: DWACTTCCRCTTTB Alignment: DWACTTCCRCTTTB BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00409 Elf5 Original Motif Reverse Complement Forward 1 10 0.003800 Species: Mus musculus Original motif 0.179167 0.229135 0.279326 0.312372 0.421239 0.102900 0.145609 0.330252 0.791978 0.009721 0.028951 0.169350 0.237609 0.375543 0.161526 0.225321 0.145845 0.325411 0.516045 0.012699 0.431007 0.516333 0.051679 0.000982 0.005750 0.001408 0.990928 0.001915 0.002025 0.001886 0.992021 0.004068 0.986405 0.001705 0.001039 0.010851 0.950652 0.003619 0.000482 0.045248 0.165221 0.013897 0.819076 0.001805 0.032042 0.049374 0.014632 0.903953 0.285325 0.108010 0.127373 0.479292 0.366131 0.141246 0.290661 0.201963 Consensus sequence: BWAHSMGGAAGTWD Reverse complement motif 0.201963 0.141246 0.290661 0.366131 0.479292 0.108010 0.127373 0.285325 0.903953 0.049374 0.014632 0.032042 0.165221 0.819076 0.013897 0.001805 0.045248 0.003619 0.000482 0.950652 0.010851 0.001705 0.001039 0.986405 0.002025 0.992021 0.001886 0.004068 0.005750 0.990928 0.001408 0.001915 0.431007 0.051679 0.516333 0.000982 0.145845 0.516045 0.325411 0.012699 0.237609 0.161526 0.375543 0.225321 0.169350 0.009721 0.028951 0.791978 0.330252 0.102900 0.145609 0.421239 0.312372 0.229135 0.279326 0.179167 Consensus sequence: DWACTTCCRSDTWV Alignment: DWACTTCCRSDTWV BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00413 Elf4 Original Motif Original Motif Backward 5 10 0.012410 Species: Mus musculus Original motif 0.349744 0.139466 0.209326 0.301464 0.080478 0.359482 0.307083 0.252956 0.145756 0.213763 0.350557 0.289924 0.317307 0.199359 0.096089 0.387245 0.868576 0.009724 0.088821 0.032878 0.001975 0.827004 0.014159 0.156862 0.045494 0.000985 0.001907 0.951615 0.011012 0.001203 0.002186 0.985599 0.002743 0.992908 0.002226 0.002123 0.001498 0.990840 0.001556 0.006106 0.000951 0.005138 0.880591 0.113319 0.003127 0.107962 0.867980 0.020930 0.156602 0.055355 0.396563 0.391480 0.421246 0.049379 0.084495 0.444880 0.223879 0.068063 0.203809 0.504249 0.144100 0.323579 0.131544 0.400777 Consensus sequence: DBBHACTTCCGGKWTH Reverse complement motif 0.400777 0.323579 0.131544 0.144100 0.504249 0.068063 0.203809 0.223879 0.444880 0.049379 0.084495 0.421246 0.156602 0.396563 0.055355 0.391480 0.003127 0.867980 0.107962 0.020930 0.000951 0.880591 0.005138 0.113319 0.001498 0.001556 0.990840 0.006106 0.002743 0.002226 0.992908 0.002123 0.985599 0.001203 0.002186 0.011012 0.951615 0.000985 0.001907 0.045494 0.001975 0.014159 0.827004 0.156862 0.032878 0.009724 0.088821 0.868576 0.387245 0.199359 0.096089 0.317307 0.145756 0.350557 0.213763 0.289924 0.080478 0.307083 0.359482 0.252956 0.301464 0.139466 0.209326 0.349744 Consensus sequence: HAWYCCGGAAGTHBBD Alignment: DBBHACTTCCGGKWTH --BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00404 Elf2 Original Motif Original Motif Forward 3 10 0.012835 Species: Mus musculus Original motif 0.381592 0.198656 0.201326 0.218426 0.091509 0.331644 0.302830 0.274017 0.165404 0.272650 0.352528 0.209418 0.322145 0.255685 0.129399 0.292771 0.853490 0.012857 0.078563 0.055090 0.002655 0.792907 0.026436 0.178002 0.058923 0.001063 0.002976 0.937038 0.014944 0.001369 0.002865 0.980822 0.003786 0.992305 0.002102 0.001807 0.001365 0.988969 0.001554 0.008111 0.001527 0.009592 0.891056 0.097824 0.003671 0.143708 0.836117 0.016503 0.242982 0.061527 0.305342 0.390148 0.426709 0.117673 0.096260 0.359357 0.202520 0.113885 0.262005 0.421589 0.137957 0.359367 0.163919 0.338758 Consensus sequence: DBBHACTTCCGGDWDB Reverse complement motif 0.137957 0.163919 0.359367 0.338758 0.421589 0.113885 0.262005 0.202520 0.359357 0.117673 0.096260 0.426709 0.390148 0.061527 0.305342 0.242982 0.003671 0.836117 0.143708 0.016503 0.001527 0.891056 0.009592 0.097824 0.001365 0.001554 0.988969 0.008111 0.003786 0.002102 0.992305 0.001807 0.980822 0.001369 0.002865 0.014944 0.937038 0.001063 0.002976 0.058923 0.002655 0.026436 0.792907 0.178002 0.055090 0.012857 0.078563 0.853490 0.292771 0.255685 0.129399 0.322145 0.165404 0.352528 0.272650 0.209418 0.091509 0.302830 0.331644 0.274017 0.218426 0.198656 0.201326 0.381592 Consensus sequence: BDWDCCGGAAGTHBBD Alignment: DBBHACTTCCGGDWDB --BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00085 Sfpi1_primary Original Motif Reverse Complement Backward 5 10 0.014152 Species: Mus musculus Original motif 0.211586 0.273653 0.234763 0.279998 0.298032 0.104818 0.290385 0.306764 0.593467 0.048056 0.154602 0.203875 0.459746 0.052697 0.169949 0.317608 0.188623 0.155357 0.591543 0.064477 0.402746 0.286227 0.290285 0.020742 0.048569 0.001240 0.946397 0.003793 0.004354 0.001387 0.990819 0.003441 0.974272 0.001416 0.001466 0.022847 0.938748 0.003090 0.000833 0.057329 0.045831 0.270321 0.674644 0.009204 0.055664 0.092552 0.026061 0.825722 0.301235 0.122653 0.267039 0.309073 0.278680 0.276099 0.219159 0.226061 Consensus sequence: BDAWGVGGAAGTDH Reverse complement motif 0.226061 0.276099 0.219159 0.278680 0.309073 0.122653 0.267039 0.301235 0.825722 0.092552 0.026061 0.055664 0.045831 0.674644 0.270321 0.009204 0.057329 0.003090 0.000833 0.938748 0.022847 0.001416 0.001466 0.974272 0.004354 0.990819 0.001387 0.003441 0.048569 0.946397 0.001240 0.003793 0.020742 0.286227 0.290285 0.402746 0.188623 0.591543 0.155357 0.064477 0.317608 0.052697 0.169949 0.459746 0.203875 0.048056 0.154602 0.593467 0.306764 0.104818 0.290385 0.298032 0.279998 0.273653 0.234763 0.211586 Consensus sequence: HDACTTCCBCWTDV Alignment: HDACTTCCBCWTDV BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 27 Motif name: Klf4 Original motif 0.338561 0.018681 0.235701 0.407057 0.020276 0.002074 0.976267 0.001382 0.003223 0.002993 0.990792 0.002993 0.003221 0.008282 0.984817 0.003681 0.063693 0.441941 0.002529 0.491837 0.005064 0.003453 0.983656 0.007827 0.009671 0.018420 0.501727 0.470182 0.060872 0.010606 0.899700 0.028822 0.028400 0.030016 0.874856 0.066728 0.058742 0.660962 0.064755 0.215541 Consensus sequence: DGGGYGKGGC Reserve complement motif 0.058742 0.064755 0.660962 0.215541 0.028400 0.874856 0.030016 0.066728 0.060872 0.899700 0.010606 0.028822 0.009671 0.501727 0.018420 0.470182 0.005064 0.983656 0.003453 0.007827 0.491837 0.441941 0.002529 0.063693 0.003221 0.984817 0.008282 0.003681 0.003223 0.990792 0.002993 0.002993 0.020276 0.976267 0.002074 0.001382 0.407057 0.018681 0.235701 0.338561 Consensus sequence: GCCYCMCCCD ************************************************************************ Best Matches for Motif ID 27 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Reverse Complement Forward 4 10 0.000000 Species: Mus musculus Original motif 0.204514 0.198353 0.171218 0.425915 0.167188 0.296785 0.246082 0.289946 0.267330 0.148001 0.398674 0.185994 0.549386 0.060167 0.337100 0.053347 0.050746 0.900013 0.022169 0.027073 0.037905 0.920332 0.008360 0.033403 0.410356 0.566702 0.016267 0.006675 0.009526 0.982354 0.001060 0.007060 0.204292 0.001084 0.748567 0.046056 0.003955 0.988490 0.002821 0.004735 0.004264 0.988826 0.004311 0.002598 0.002758 0.929549 0.001244 0.066448 0.260332 0.421683 0.024720 0.293265 0.184798 0.247697 0.085237 0.482268 0.347537 0.197344 0.139961 0.315159 0.255281 0.166620 0.242297 0.335802 Consensus sequence: HBDRCCMCGCCCHHHD Reverse complement motif 0.335802 0.166620 0.242297 0.255281 0.315159 0.197344 0.139961 0.347537 0.482268 0.247697 0.085237 0.184798 0.260332 0.024720 0.421683 0.293265 0.002758 0.001244 0.929549 0.066448 0.004264 0.004311 0.988826 0.002598 0.003955 0.002821 0.988490 0.004735 0.204292 0.748567 0.001084 0.046056 0.009526 0.001060 0.982354 0.007060 0.410356 0.016267 0.566702 0.006675 0.037905 0.008360 0.920332 0.033403 0.050746 0.022169 0.900013 0.027073 0.053347 0.060167 0.337100 0.549386 0.267330 0.398674 0.148001 0.185994 0.167188 0.246082 0.296785 0.289946 0.425915 0.198353 0.171218 0.204514 Consensus sequence: DHHDGGGCGRGGKHBH Alignment: DHHDGGGCGRGGKHBH ---DGGGYGKGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Reverse Complement Original Motif Forward 4 10 0.015331 Species: Mus musculus Original motif 0.201535 0.165213 0.201324 0.431929 0.136153 0.443451 0.179132 0.241264 0.263149 0.555137 0.067983 0.113731 0.142183 0.737634 0.045722 0.074461 0.044982 0.884112 0.045356 0.025549 0.246434 0.590578 0.022655 0.140333 0.123049 0.591257 0.033072 0.252622 0.018153 0.944742 0.010254 0.026851 0.035459 0.953844 0.003988 0.006709 0.020000 0.954344 0.005966 0.019690 0.015299 0.964390 0.006755 0.013557 0.028565 0.936152 0.011660 0.023623 0.300127 0.517309 0.029700 0.152863 0.159063 0.513443 0.051834 0.275660 0.158172 0.647055 0.133256 0.061516 Consensus sequence: DBCCCCCCCCCCMYC Reverse complement motif 0.158172 0.133256 0.647055 0.061516 0.159063 0.051834 0.513443 0.275660 0.300127 0.029700 0.517309 0.152863 0.028565 0.011660 0.936152 0.023623 0.015299 0.006755 0.964390 0.013557 0.020000 0.005966 0.954344 0.019690 0.035459 0.003988 0.953844 0.006709 0.018153 0.010254 0.944742 0.026851 0.123049 0.033072 0.591257 0.252622 0.246434 0.022655 0.590578 0.140333 0.044982 0.045356 0.884112 0.025549 0.142183 0.045722 0.737634 0.074461 0.263149 0.067983 0.555137 0.113731 0.136153 0.179132 0.443451 0.241264 0.431929 0.165213 0.201324 0.201535 Consensus sequence: GKRGGGGGGGGGGBD Alignment: DBCCCCCCCCCCMYC ---GCCYCMCCCD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_secondary Original Motif Original Motif Forward 3 10 0.018679 Species: Mus musculus Original motif 0.146334 0.312326 0.244281 0.297060 0.493155 0.092609 0.162506 0.251729 0.503593 0.059863 0.077561 0.358984 0.763321 0.015264 0.213114 0.008301 0.012415 0.025932 0.945502 0.016151 0.006713 0.015221 0.950098 0.027968 0.062415 0.834303 0.054500 0.048782 0.011010 0.020677 0.928821 0.039493 0.012785 0.024162 0.145822 0.817231 0.133595 0.033962 0.787876 0.044567 0.140697 0.180481 0.428253 0.250570 0.036281 0.806412 0.033510 0.123797 0.157910 0.408607 0.122427 0.311055 0.292185 0.260017 0.197515 0.250283 0.251107 0.124480 0.359447 0.264967 Consensus sequence: BDWAGGCGTGBCHHD Reverse complement motif 0.251107 0.359447 0.124480 0.264967 0.250283 0.260017 0.197515 0.292185 0.157910 0.122427 0.408607 0.311055 0.036281 0.033510 0.806412 0.123797 0.140697 0.428253 0.180481 0.250570 0.133595 0.787876 0.033962 0.044567 0.817231 0.024162 0.145822 0.012785 0.011010 0.928821 0.020677 0.039493 0.062415 0.054500 0.834303 0.048782 0.006713 0.950098 0.015221 0.027968 0.012415 0.945502 0.025932 0.016151 0.008301 0.015264 0.213114 0.763321 0.358984 0.059863 0.077561 0.503593 0.251729 0.092609 0.162506 0.493155 0.146334 0.244281 0.312326 0.297060 Consensus sequence: HHDGBCACGCCTWDB Alignment: BDWAGGCGTGBCHHD --DGGGYGKGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Reverse Complement Original Motif Forward 3 10 0.021840 Species: Mus musculus Original motif 0.136946 0.396508 0.135309 0.331236 0.185528 0.417538 0.215409 0.181525 0.171276 0.341901 0.172832 0.313991 0.145641 0.590572 0.146376 0.117412 0.138035 0.660416 0.114016 0.087533 0.222728 0.750532 0.007528 0.019212 0.024633 0.963314 0.001894 0.010159 0.009557 0.979956 0.000642 0.009844 0.010416 0.977424 0.000541 0.011619 0.026401 0.956740 0.001544 0.015314 0.195502 0.755959 0.011060 0.037480 0.491291 0.364785 0.025613 0.118311 0.305153 0.398160 0.071680 0.225008 0.253497 0.232647 0.213246 0.300610 0.156964 0.297876 0.144683 0.400477 0.179549 0.292514 0.319462 0.208475 Consensus sequence: HVBCCCCCCCCMHHHB Reverse complement motif 0.179549 0.319462 0.292514 0.208475 0.400477 0.297876 0.144683 0.156964 0.300610 0.232647 0.213246 0.253497 0.305153 0.071680 0.398160 0.225008 0.118311 0.364785 0.025613 0.491291 0.195502 0.011060 0.755959 0.037480 0.026401 0.001544 0.956740 0.015314 0.010416 0.000541 0.977424 0.011619 0.009557 0.000642 0.979956 0.009844 0.024633 0.001894 0.963314 0.010159 0.222728 0.007528 0.750532 0.019212 0.138035 0.114016 0.660416 0.087533 0.145641 0.146376 0.590572 0.117412 0.171276 0.172832 0.341901 0.313991 0.185528 0.215409 0.417538 0.181525 0.136946 0.135309 0.396508 0.331236 Consensus sequence: BHHDYGGGGGGGGBVD Alignment: HVBCCCCCCCCMHHHB --GCCYCMCCCD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Reverse Complement Original Motif Forward 1 10 0.024959 Species: Mus musculus Original motif 0.211547 0.282708 0.203472 0.302273 0.141988 0.722437 0.054854 0.080721 0.032605 0.877172 0.012432 0.077792 0.115126 0.070606 0.781290 0.032979 0.003516 0.990021 0.002265 0.004198 0.004715 0.982482 0.009897 0.002906 0.001627 0.975937 0.001662 0.020774 0.262352 0.731732 0.002730 0.003187 0.005890 0.985756 0.002081 0.006273 0.022893 0.090460 0.649322 0.237324 0.023038 0.859949 0.037913 0.079101 0.567633 0.057394 0.166792 0.208181 0.176597 0.331265 0.125308 0.366830 0.183049 0.183774 0.226793 0.406384 Consensus sequence: HCCGCCCCCGCAHB Reverse complement motif 0.406384 0.183774 0.226793 0.183049 0.366830 0.331265 0.125308 0.176597 0.208181 0.057394 0.166792 0.567633 0.023038 0.037913 0.859949 0.079101 0.022893 0.649322 0.090460 0.237324 0.005890 0.002081 0.985756 0.006273 0.262352 0.002730 0.731732 0.003187 0.001627 0.001662 0.975937 0.020774 0.004715 0.009897 0.982482 0.002906 0.003516 0.002265 0.990021 0.004198 0.115126 0.781290 0.070606 0.032979 0.032605 0.012432 0.877172 0.077792 0.141988 0.054854 0.722437 0.080721 0.302273 0.282708 0.203472 0.211547 Consensus sequence: VHTGCGGGGGCGGH Alignment: VHTGCGGGGGCGGH GCCYCMCCCD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 28 Motif name: E2F1 Original motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.400000 0.600000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.900000 0.100000 0.000000 Consensus sequence: TTTSGCGC Reserve complement motif 0.000000 0.100000 0.900000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 0.600000 0.400000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: GCGCSAAA ************************************************************************ Best Matches for Motif ID 28 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00001 E2F2_secondary Original Motif Reverse Complement Backward 7 8 0.000000 Species: Mus musculus Original motif 0.270440 0.280855 0.182254 0.266451 0.232294 0.286577 0.287022 0.194107 0.182719 0.289524 0.187726 0.340031 0.321668 0.055383 0.129604 0.493345 0.105971 0.476989 0.007580 0.409460 0.150172 0.013701 0.803513 0.032614 0.004559 0.194378 0.794741 0.006322 0.047843 0.942269 0.005918 0.003970 0.010089 0.002584 0.946109 0.041218 0.012276 0.865373 0.117935 0.004415 0.045912 0.779220 0.006935 0.167933 0.781965 0.011623 0.113119 0.093293 0.612968 0.172164 0.096061 0.118806 0.357204 0.206997 0.222456 0.213343 0.292059 0.261101 0.279674 0.167166 0.164667 0.173227 0.371882 0.290223 0.157765 0.278892 0.333119 0.230224 Consensus sequence: HVBWYGGCGCCAADVBB Reverse complement motif 0.157765 0.333119 0.278892 0.230224 0.164667 0.371882 0.173227 0.290223 0.167166 0.261101 0.279674 0.292059 0.213343 0.206997 0.222456 0.357204 0.118806 0.172164 0.096061 0.612968 0.093293 0.011623 0.113119 0.781965 0.045912 0.006935 0.779220 0.167933 0.012276 0.117935 0.865373 0.004415 0.010089 0.946109 0.002584 0.041218 0.047843 0.005918 0.942269 0.003970 0.004559 0.794741 0.194378 0.006322 0.150172 0.803513 0.013701 0.032614 0.105971 0.007580 0.476989 0.409460 0.493345 0.055383 0.129604 0.321668 0.340031 0.289524 0.187726 0.182719 0.232294 0.287022 0.286577 0.194107 0.270440 0.182254 0.280855 0.266451 Consensus sequence: BBBDTTGGCGCCKWVVD Alignment: BBBDTTGGCGCCKWVVD ---TTTSGCGC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_secondary Reverse Complement Original Motif Backward 4 8 0.001820 Species: Mus musculus Original motif 0.265095 0.268267 0.222997 0.243641 0.200676 0.255224 0.341788 0.202312 0.178293 0.362068 0.104617 0.355022 0.351308 0.049870 0.101991 0.496832 0.114543 0.445994 0.008584 0.430879 0.113589 0.020854 0.846807 0.018750 0.004661 0.132010 0.859240 0.004088 0.030896 0.962007 0.004017 0.003080 0.006194 0.002090 0.965564 0.026152 0.008009 0.911831 0.077009 0.003151 0.029519 0.830096 0.011333 0.129053 0.764710 0.016406 0.088627 0.130257 0.530327 0.265186 0.100721 0.103765 0.331689 0.153148 0.308482 0.206682 0.332536 0.311591 0.232118 0.123755 0.175189 0.233372 0.375563 0.215876 0.183884 0.334856 0.283993 0.197267 Consensus sequence: HBHWYGGCGCCAMDVBB Reverse complement motif 0.183884 0.283993 0.334856 0.197267 0.175189 0.375563 0.233372 0.215876 0.123755 0.311591 0.232118 0.332536 0.206682 0.153148 0.308482 0.331689 0.103765 0.265186 0.100721 0.530327 0.130257 0.016406 0.088627 0.764710 0.029519 0.011333 0.830096 0.129053 0.008009 0.077009 0.911831 0.003151 0.006194 0.965564 0.002090 0.026152 0.030896 0.004017 0.962007 0.003080 0.004661 0.859240 0.132010 0.004088 0.113589 0.846807 0.020854 0.018750 0.114543 0.008584 0.445994 0.430879 0.496832 0.049870 0.101991 0.351308 0.178293 0.104617 0.362068 0.355022 0.200676 0.341788 0.255224 0.202312 0.265095 0.222997 0.268267 0.243641 Consensus sequence: BBBDYTGGCGCCKWDBD Alignment: HBHWYGGCGCCAMDVBB ------GCGCSAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00072 IRC900814_primary Reverse Complement Original Motif Forward 5 8 0.023764 Species: Mus musculus Original motif 0.365594 0.139520 0.170474 0.324412 0.273874 0.192800 0.250453 0.282872 0.161547 0.330332 0.098428 0.409694 0.084003 0.205596 0.098191 0.612210 0.953705 0.016367 0.006314 0.023614 0.003494 0.989648 0.003278 0.003580 0.004722 0.003156 0.988805 0.003317 0.939828 0.001925 0.052151 0.006096 0.183998 0.760396 0.030845 0.024762 0.917564 0.003661 0.065438 0.013337 0.965452 0.006559 0.005183 0.022807 0.730611 0.054369 0.006576 0.208444 0.266519 0.133801 0.067418 0.532262 0.329952 0.210903 0.220319 0.238826 0.250220 0.197954 0.314202 0.237625 0.172311 0.401218 0.189340 0.237131 Consensus sequence: DDHTACGACAAAWDDB Reverse complement motif 0.172311 0.189340 0.401218 0.237131 0.250220 0.314202 0.197954 0.237625 0.238826 0.210903 0.220319 0.329952 0.532262 0.133801 0.067418 0.266519 0.208444 0.054369 0.006576 0.730611 0.022807 0.006559 0.005183 0.965452 0.013337 0.003661 0.065438 0.917564 0.183998 0.030845 0.760396 0.024762 0.006096 0.001925 0.052151 0.939828 0.004722 0.988805 0.003156 0.003317 0.003494 0.003278 0.989648 0.003580 0.023614 0.016367 0.006314 0.953705 0.612210 0.205596 0.098191 0.084003 0.409694 0.330332 0.098428 0.161547 0.282872 0.192800 0.250453 0.273874 0.324412 0.139520 0.170474 0.365594 Consensus sequence: BHDWTTTGTCGTAHDD Alignment: DDHTACGACAAAWDDB ----GCGCSAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_primary Reverse Complement Reverse Complement Backward 3 8 0.027564 Species: Mus musculus Original motif 0.358868 0.212371 0.263565 0.165196 0.303014 0.253580 0.111217 0.332189 0.420933 0.110957 0.210958 0.257152 0.769724 0.062662 0.032155 0.135459 0.311973 0.051319 0.408669 0.228039 0.097916 0.141153 0.719697 0.041234 0.009980 0.014044 0.971955 0.004021 0.014425 0.974798 0.008373 0.002404 0.000891 0.013228 0.983966 0.001915 0.000827 0.938560 0.059548 0.001065 0.007071 0.102005 0.872378 0.018546 0.020099 0.897653 0.014151 0.068097 0.114080 0.346724 0.409037 0.130159 0.331439 0.279041 0.085030 0.304491 0.319846 0.136792 0.043641 0.499722 Consensus sequence: VHDADGGCGCGCSHW Reverse complement motif 0.499722 0.136792 0.043641 0.319846 0.304491 0.279041 0.085030 0.331439 0.114080 0.409037 0.346724 0.130159 0.020099 0.014151 0.897653 0.068097 0.007071 0.872378 0.102005 0.018546 0.000827 0.059548 0.938560 0.001065 0.000891 0.983966 0.013228 0.001915 0.014425 0.008373 0.974798 0.002404 0.009980 0.971955 0.014044 0.004021 0.097916 0.719697 0.141153 0.041234 0.311973 0.408669 0.051319 0.228039 0.135459 0.062662 0.032155 0.769724 0.257152 0.110957 0.210958 0.420933 0.332189 0.253580 0.111217 0.303014 0.165196 0.212371 0.263565 0.358868 Consensus sequence: WHSGCGCGCCHTDHB Alignment: WHSGCGCGCCHTDHB -----GCGCSAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_primary Reverse Complement Reverse Complement Forward 9 8 0.028109 Species: Mus musculus Original motif 0.142624 0.111294 0.283688 0.462394 0.221170 0.081404 0.499138 0.198288 0.290070 0.042114 0.604904 0.062912 0.109755 0.559510 0.215454 0.115281 0.111745 0.022727 0.850580 0.014948 0.015907 0.942291 0.005561 0.036241 0.088509 0.003729 0.902805 0.004957 0.004957 0.902805 0.003729 0.088509 0.036241 0.005561 0.942291 0.015907 0.014948 0.850580 0.022727 0.111745 0.325358 0.049424 0.519652 0.105566 0.062912 0.604904 0.042114 0.290070 0.214335 0.388248 0.125912 0.271505 0.128984 0.372787 0.092390 0.405839 0.269058 0.098422 0.484016 0.148504 0.362176 0.156050 0.188642 0.293132 Consensus sequence: DDGCGCGCGCRCHYRD Reverse complement motif 0.293132 0.156050 0.188642 0.362176 0.269058 0.484016 0.098422 0.148504 0.405839 0.372787 0.092390 0.128984 0.214335 0.125912 0.388248 0.271505 0.062912 0.042114 0.604904 0.290070 0.325358 0.519652 0.049424 0.105566 0.014948 0.022727 0.850580 0.111745 0.036241 0.942291 0.005561 0.015907 0.004957 0.003729 0.902805 0.088509 0.088509 0.902805 0.003729 0.004957 0.015907 0.005561 0.942291 0.036241 0.111745 0.850580 0.022727 0.014948 0.109755 0.215454 0.559510 0.115281 0.290070 0.604904 0.042114 0.062912 0.221170 0.499138 0.081404 0.198288 0.462394 0.111294 0.283688 0.142624 Consensus sequence: DMMDGMGCGCGCGCHD Alignment: DMMDGMGCGCGCGCHD --------GCGCSAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 29 Motif name: HIF1AARNT Original motif 0.259615 0.269231 0.471154 0.000000 0.096154 0.278846 0.326923 0.298077 0.750000 0.019231 0.221154 0.009615 0.000000 0.990385 0.000000 0.009615 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.173077 0.490385 0.192308 0.144231 Consensus sequence: VBACGTGV Reserve complement motif 0.173077 0.192308 0.490385 0.144231 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.990385 0.009615 0.009615 0.019231 0.221154 0.750000 0.096154 0.326923 0.278846 0.298077 0.259615 0.471154 0.269231 0.000000 Consensus sequence: VCACGTBV ************************************************************************ Best Matches for Motif ID 29 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00097 Mtf1_primary Reverse Complement Reverse Complement Forward 8 8 0.000000 Species: Mus musculus Original motif 0.220880 0.102939 0.418146 0.258035 0.154303 0.210788 0.420671 0.214238 0.229141 0.160788 0.412818 0.197253 0.167193 0.404248 0.092489 0.336070 0.025978 0.931335 0.023830 0.018857 0.009150 0.002023 0.977342 0.011485 0.044768 0.024113 0.039091 0.892028 0.007577 0.008370 0.973767 0.010286 0.005251 0.264996 0.004018 0.725735 0.009165 0.002428 0.980566 0.007841 0.021296 0.956027 0.008893 0.013784 0.982532 0.003341 0.005773 0.008353 0.500983 0.226027 0.143944 0.129045 0.544466 0.285936 0.044719 0.124879 0.321158 0.168428 0.261827 0.248587 0.271460 0.263221 0.199083 0.266236 Consensus sequence: DBDHCGTGTGCAAMDH Reverse complement motif 0.266236 0.263221 0.199083 0.271460 0.248587 0.168428 0.261827 0.321158 0.124879 0.285936 0.044719 0.544466 0.129045 0.226027 0.143944 0.500983 0.008353 0.003341 0.005773 0.982532 0.021296 0.008893 0.956027 0.013784 0.009165 0.980566 0.002428 0.007841 0.725735 0.264996 0.004018 0.005251 0.007577 0.973767 0.008370 0.010286 0.892028 0.024113 0.039091 0.044768 0.009150 0.977342 0.002023 0.011485 0.025978 0.023830 0.931335 0.018857 0.167193 0.092489 0.404248 0.336070 0.229141 0.412818 0.160788 0.197253 0.154303 0.420671 0.210788 0.214238 0.220880 0.418146 0.102939 0.258035 Consensus sequence: HDYTTGCACACGDHBH Alignment: HDYTTGCACACGDHBH -------VCACGTBV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_primary Original Motif Original Motif Forward 4 8 0.000574 Species: Mus musculus Original motif 0.234855 0.152539 0.301720 0.310886 0.199226 0.147959 0.439250 0.213565 0.582926 0.274768 0.075866 0.066440 0.138829 0.475428 0.305884 0.079859 0.024979 0.969691 0.001811 0.003520 0.966345 0.003728 0.022320 0.007607 0.000598 0.907006 0.008160 0.084236 0.084236 0.008160 0.907006 0.000598 0.007607 0.022320 0.003728 0.966345 0.003520 0.001811 0.969691 0.024979 0.149140 0.241218 0.389598 0.220044 0.066440 0.075866 0.274768 0.582926 0.186990 0.346199 0.250066 0.216745 0.273437 0.225889 0.300738 0.199936 0.160893 0.111177 0.477963 0.249968 0.171790 0.101256 0.424580 0.302375 Consensus sequence: DDASCACGTGBTBVDD Reverse complement motif 0.171790 0.424580 0.101256 0.302375 0.160893 0.477963 0.111177 0.249968 0.273437 0.300738 0.225889 0.199936 0.186990 0.250066 0.346199 0.216745 0.582926 0.075866 0.274768 0.066440 0.149140 0.389598 0.241218 0.220044 0.003520 0.969691 0.001811 0.024979 0.966345 0.022320 0.003728 0.007607 0.084236 0.907006 0.008160 0.000598 0.000598 0.008160 0.907006 0.084236 0.007607 0.003728 0.022320 0.966345 0.024979 0.001811 0.969691 0.003520 0.138829 0.305884 0.475428 0.079859 0.066440 0.274768 0.075866 0.582926 0.199226 0.439250 0.147959 0.213565 0.310886 0.152539 0.301720 0.234855 Consensus sequence: HHVBABCACGTGSTHD Alignment: DDASCACGTGBTBVDD ---VBACGTGV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Original Motif Original Motif Backward 9 8 0.006425 Species: Mus musculus Original motif 0.120938 0.344851 0.124072 0.410138 0.220931 0.169844 0.422396 0.186829 0.127752 0.260812 0.103811 0.507625 0.140641 0.405473 0.287668 0.166218 0.296957 0.155579 0.301094 0.246370 0.219647 0.287193 0.154072 0.339087 0.049294 0.026059 0.121789 0.802859 0.520042 0.289284 0.173423 0.017251 0.049190 0.943472 0.004308 0.003030 0.902609 0.006767 0.074770 0.015854 0.003221 0.971329 0.005512 0.019937 0.019937 0.005512 0.971329 0.003221 0.015854 0.074770 0.006767 0.902609 0.003030 0.004308 0.943472 0.049190 0.003497 0.088920 0.685942 0.221641 0.802859 0.121789 0.026059 0.049294 0.334544 0.155170 0.275193 0.235092 0.275957 0.132104 0.454982 0.136957 0.134097 0.254352 0.422940 0.188611 0.396163 0.432784 0.051281 0.119772 0.276474 0.115627 0.419844 0.188056 0.160759 0.088061 0.649863 0.101318 0.203314 0.166595 0.106821 0.523270 Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Reverse complement motif 0.523270 0.166595 0.106821 0.203314 0.160759 0.649863 0.088061 0.101318 0.276474 0.419844 0.115627 0.188056 0.396163 0.051281 0.432784 0.119772 0.134097 0.422940 0.254352 0.188611 0.275957 0.454982 0.132104 0.136957 0.235092 0.155170 0.275193 0.334544 0.049294 0.121789 0.026059 0.802859 0.003497 0.685942 0.088920 0.221641 0.003030 0.943472 0.004308 0.049190 0.902609 0.074770 0.006767 0.015854 0.019937 0.971329 0.005512 0.003221 0.003221 0.005512 0.971329 0.019937 0.015854 0.006767 0.074770 0.902609 0.049190 0.004308 0.943472 0.003030 0.017251 0.289284 0.173423 0.520042 0.802859 0.026059 0.121789 0.049294 0.339087 0.287193 0.154072 0.219647 0.296957 0.301094 0.155579 0.246370 0.140641 0.287668 0.405473 0.166218 0.507625 0.260812 0.103811 0.127752 0.220931 0.422396 0.169844 0.186829 0.410138 0.344851 0.124072 0.120938 Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM Alignment: YDYBDHTMCACGTGGADDBMDGT -------VBACGTGV-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00084 Gmeb1_primary Original Motif Reverse Complement Backward 5 8 0.013117 Species: Mus musculus Original motif 0.166569 0.264627 0.345569 0.223235 0.335599 0.314451 0.153336 0.196615 0.105350 0.231839 0.348018 0.314793 0.131274 0.215623 0.291288 0.361815 0.125570 0.072341 0.404848 0.397242 0.049879 0.039110 0.325167 0.585844 0.705098 0.009202 0.284757 0.000943 0.003535 0.986983 0.004275 0.005207 0.005207 0.004275 0.986983 0.003535 0.000943 0.284757 0.009202 0.705098 0.585844 0.325167 0.039110 0.049879 0.397242 0.404848 0.072341 0.125570 0.206857 0.234555 0.371731 0.186857 0.435957 0.145115 0.181033 0.237896 0.176104 0.260127 0.230770 0.333000 0.272102 0.213365 0.312032 0.202501 0.237402 0.250982 0.266977 0.244639 Consensus sequence: BHBBKKACGTMMVDBVB Reverse complement motif 0.237402 0.266977 0.250982 0.244639 0.272102 0.312032 0.213365 0.202501 0.333000 0.260127 0.230770 0.176104 0.237896 0.145115 0.181033 0.435957 0.206857 0.371731 0.234555 0.186857 0.397242 0.072341 0.404848 0.125570 0.049879 0.325167 0.039110 0.585844 0.705098 0.284757 0.009202 0.000943 0.005207 0.986983 0.004275 0.003535 0.003535 0.004275 0.986983 0.005207 0.000943 0.009202 0.284757 0.705098 0.585844 0.039110 0.325167 0.049879 0.125570 0.404848 0.072341 0.397242 0.361815 0.215623 0.291288 0.131274 0.105350 0.348018 0.231839 0.314793 0.196615 0.314451 0.153336 0.335599 0.166569 0.345569 0.264627 0.223235 Consensus sequence: BVVDVRYACGTRYVBHB Alignment: BVVDVRYACGTRYVBHB -----VBACGTGV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Reverse Complement Original Motif Backward 8 8 0.014006 Species: Mus musculus Original motif 0.347837 0.112349 0.403713 0.136102 0.298329 0.175329 0.324534 0.201809 0.421791 0.222553 0.113615 0.242041 0.387506 0.130670 0.161435 0.320389 0.197183 0.244864 0.304611 0.253342 0.345884 0.188786 0.278290 0.187041 0.228203 0.142148 0.408269 0.221381 0.037126 0.006772 0.231775 0.724328 0.055214 0.942800 0.001192 0.000794 0.974119 0.004466 0.015535 0.005880 0.000300 0.958145 0.007498 0.034056 0.034056 0.007498 0.958145 0.000300 0.005880 0.015535 0.004466 0.974119 0.000794 0.001192 0.942800 0.055214 0.724328 0.231775 0.006772 0.037126 0.015720 0.466476 0.315208 0.202596 0.173670 0.355170 0.210710 0.260449 0.407419 0.261539 0.134430 0.196612 0.351478 0.209698 0.262426 0.176399 0.207869 0.284582 0.198951 0.308598 0.434482 0.113724 0.184408 0.267386 0.211144 0.363745 0.173978 0.251133 Consensus sequence: RDHDBVDTCACGTGASBHVHDH Reverse complement motif 0.211144 0.173978 0.363745 0.251133 0.267386 0.113724 0.184408 0.434482 0.308598 0.284582 0.198951 0.207869 0.176399 0.209698 0.262426 0.351478 0.196612 0.261539 0.134430 0.407419 0.173670 0.210710 0.355170 0.260449 0.015720 0.315208 0.466476 0.202596 0.037126 0.231775 0.006772 0.724328 0.000794 0.942800 0.001192 0.055214 0.974119 0.015535 0.004466 0.005880 0.034056 0.958145 0.007498 0.000300 0.000300 0.007498 0.958145 0.034056 0.005880 0.004466 0.015535 0.974119 0.055214 0.001192 0.942800 0.000794 0.724328 0.006772 0.231775 0.037126 0.228203 0.408269 0.142148 0.221381 0.187041 0.188786 0.278290 0.345884 0.197183 0.304611 0.244864 0.253342 0.320389 0.130670 0.161435 0.387506 0.242041 0.222553 0.113615 0.421791 0.298329 0.324534 0.175329 0.201809 0.347837 0.403713 0.112349 0.136102 Consensus sequence: DDHBHBSTCACGTGAHBBDHHM Alignment: RDHDBVDTCACGTGASBHVHDH -------VCACGTBV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 30 Motif name: PLAG1 Original motif 0.000000 0.000000 1.000000 0.000000 0.166667 0.000000 0.777778 0.055556 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.944444 0.055556 0.000000 0.777778 0.222222 0.000000 0.000000 0.833333 0.055556 0.111111 0.222222 0.555556 0.055556 0.166667 0.666667 0.000000 0.000000 0.333333 0.611111 0.277778 0.111111 0.000000 0.111111 0.000000 0.777778 0.111111 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.888889 0.111111 0.111111 0.000000 0.888889 0.000000 Consensus sequence: GGGGCCCAAGGGGG Reserve complement motif 0.111111 0.888889 0.000000 0.000000 0.000000 0.888889 0.000000 0.111111 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.111111 0.777778 0.000000 0.111111 0.000000 0.277778 0.111111 0.611111 0.333333 0.000000 0.000000 0.666667 0.222222 0.055556 0.555556 0.166667 0.000000 0.055556 0.833333 0.111111 0.000000 0.222222 0.777778 0.000000 0.000000 0.944444 0.000000 0.055556 0.000000 1.000000 0.000000 0.000000 0.166667 0.777778 0.000000 0.055556 0.000000 1.000000 0.000000 0.000000 Consensus sequence: CCCCCTTGGGCCCC ************************************************************************ Best Matches for Motif ID 30 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00102 Zic1_primary Reverse Complement Reverse Complement Forward 1 14 0.049953 Species: Mus musculus Original motif 0.174040 0.367918 0.270176 0.187866 0.359560 0.309872 0.111047 0.219520 0.094468 0.790352 0.026034 0.089145 0.114860 0.779490 0.050895 0.054755 0.105195 0.837712 0.031857 0.025237 0.045234 0.825039 0.073990 0.055737 0.145555 0.592986 0.228415 0.033044 0.045273 0.175001 0.607615 0.172111 0.055737 0.073990 0.825039 0.045234 0.025237 0.031857 0.837712 0.105195 0.054755 0.050895 0.779490 0.114860 0.089145 0.026034 0.790352 0.094468 0.060833 0.067787 0.717352 0.154028 0.097742 0.194545 0.591608 0.116104 Consensus sequence: BHCCCCCGGGGGGG Reverse complement motif 0.097742 0.591608 0.194545 0.116104 0.060833 0.717352 0.067787 0.154028 0.089145 0.790352 0.026034 0.094468 0.054755 0.779490 0.050895 0.114860 0.025237 0.837712 0.031857 0.105195 0.055737 0.825039 0.073990 0.045234 0.045273 0.607615 0.175001 0.172111 0.145555 0.228415 0.592986 0.033044 0.045234 0.073990 0.825039 0.055737 0.105195 0.031857 0.837712 0.025237 0.114860 0.050895 0.779490 0.054755 0.094468 0.026034 0.790352 0.089145 0.219520 0.309872 0.111047 0.359560 0.174040 0.270176 0.367918 0.187866 Consensus sequence: CCCCCCCGGGGGHB Alignment: CCCCCCCGGGGGHB CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primary Reverse Complement Original Motif Backward 1 14 0.054061 Species: Mus musculus Original motif 0.183797 0.268049 0.330111 0.218043 0.127599 0.330310 0.243614 0.298477 0.143199 0.188046 0.268593 0.400162 0.214690 0.205230 0.247090 0.332990 0.294688 0.299104 0.327152 0.079056 0.221909 0.193223 0.480155 0.104712 0.444072 0.068239 0.481838 0.005852 0.006182 0.015429 0.901278 0.077111 0.766535 0.111138 0.121632 0.000696 0.014848 0.973961 0.000298 0.010893 0.001807 0.992200 0.002669 0.003324 0.795344 0.140510 0.018576 0.045571 0.006990 0.988200 0.002510 0.002299 0.154898 0.842296 0.000998 0.001808 0.029577 0.919262 0.006935 0.044226 0.677987 0.032075 0.185065 0.104874 0.195132 0.364580 0.319321 0.120967 0.225412 0.115034 0.612849 0.046705 0.548628 0.058900 0.162857 0.229616 0.112531 0.340331 0.165910 0.381227 0.073029 0.303078 0.363896 0.259997 0.561485 0.260567 0.092979 0.084969 0.132283 0.457691 0.140159 0.269867 Consensus sequence: BBBDVVRGACCACCCAVGABBAB Reverse complement motif 0.132283 0.140159 0.457691 0.269867 0.084969 0.260567 0.092979 0.561485 0.073029 0.363896 0.303078 0.259997 0.381227 0.340331 0.165910 0.112531 0.229616 0.058900 0.162857 0.548628 0.225412 0.612849 0.115034 0.046705 0.195132 0.319321 0.364580 0.120967 0.104874 0.032075 0.185065 0.677987 0.029577 0.006935 0.919262 0.044226 0.154898 0.000998 0.842296 0.001808 0.006990 0.002510 0.988200 0.002299 0.045571 0.140510 0.018576 0.795344 0.001807 0.002669 0.992200 0.003324 0.014848 0.000298 0.973961 0.010893 0.000696 0.111138 0.121632 0.766535 0.006182 0.901278 0.015429 0.077111 0.444072 0.481838 0.068239 0.005852 0.221909 0.480155 0.193223 0.104712 0.294688 0.327152 0.299104 0.079056 0.332990 0.205230 0.247090 0.214690 0.400162 0.188046 0.268593 0.143199 0.127599 0.243614 0.330310 0.298477 0.183797 0.330111 0.268049 0.218043 Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB Alignment: BTBVTCVTGGGTGGTCMVVDVBB ---------CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_primary Reverse Complement Original Motif Backward 1 14 0.054841 Species: Mus musculus Original motif 0.171475 0.300729 0.275648 0.252148 0.274948 0.494479 0.090926 0.139646 0.136266 0.716563 0.033328 0.113843 0.116272 0.772964 0.046083 0.064680 0.103529 0.835329 0.032215 0.028927 0.057023 0.813129 0.071277 0.058571 0.057483 0.766273 0.157290 0.018955 0.071535 0.110226 0.631760 0.186479 0.058571 0.071277 0.813129 0.057023 0.028927 0.032215 0.835329 0.103529 0.064680 0.046083 0.772964 0.116272 0.113843 0.033328 0.716563 0.136266 0.119744 0.068294 0.609218 0.202743 0.065793 0.215443 0.562951 0.155813 0.178819 0.196535 0.205955 0.418691 Consensus sequence: BMCCCCCGGGGGGGB Reverse complement motif 0.418691 0.196535 0.205955 0.178819 0.065793 0.562951 0.215443 0.155813 0.119744 0.609218 0.068294 0.202743 0.113843 0.716563 0.033328 0.136266 0.064680 0.772964 0.046083 0.116272 0.028927 0.835329 0.032215 0.103529 0.058571 0.813129 0.071277 0.057023 0.071535 0.631760 0.110226 0.186479 0.057483 0.157290 0.766273 0.018955 0.057023 0.071277 0.813129 0.058571 0.103529 0.032215 0.835329 0.028927 0.116272 0.046083 0.772964 0.064680 0.136266 0.033328 0.716563 0.113843 0.274948 0.090926 0.494479 0.139646 0.171475 0.275648 0.300729 0.252148 Consensus sequence: VCCCCCCCGGGGGRB Alignment: VCCCCCCCGGGGGRB -CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_secondary Original Motif Reverse Complement Backward 1 14 0.055678 Species: Mus musculus Original motif 0.198427 0.243196 0.159241 0.399136 0.267754 0.388187 0.116811 0.227248 0.448284 0.056403 0.414623 0.080691 0.031469 0.826323 0.055436 0.086772 0.035527 0.756642 0.022985 0.184845 0.127338 0.316078 0.155806 0.400778 0.135021 0.313650 0.287760 0.263570 0.418892 0.082297 0.068352 0.430460 0.201062 0.044735 0.711358 0.042845 0.038934 0.022320 0.903763 0.034982 0.201790 0.065554 0.460526 0.272130 0.006890 0.786923 0.061853 0.144334 0.460666 0.103658 0.196452 0.239224 0.092272 0.204611 0.390375 0.312742 Consensus sequence: HHRCCBBWGGDCDB Reverse complement motif 0.092272 0.390375 0.204611 0.312742 0.239224 0.103658 0.196452 0.460666 0.006890 0.061853 0.786923 0.144334 0.201790 0.460526 0.065554 0.272130 0.038934 0.903763 0.022320 0.034982 0.201062 0.711358 0.044735 0.042845 0.430460 0.082297 0.068352 0.418892 0.135021 0.287760 0.313650 0.263570 0.400778 0.316078 0.155806 0.127338 0.035527 0.022985 0.756642 0.184845 0.031469 0.055436 0.826323 0.086772 0.080691 0.056403 0.414623 0.448284 0.267754 0.116811 0.388187 0.227248 0.399136 0.243196 0.159241 0.198427 Consensus sequence: BDGHCCWBVGGKDH Alignment: BDGHCCWBVGGKDH GGGGCCCAAGGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00006 Zic3_primary Reverse Complement Original Motif Forward 2 14 0.056976 Species: Mus musculus Original motif 0.133123 0.374622 0.252864 0.239392 0.305344 0.451195 0.093638 0.149822 0.125347 0.723516 0.027695 0.123442 0.129457 0.754873 0.045215 0.070455 0.117681 0.809987 0.036742 0.035590 0.046565 0.817263 0.077300 0.058872 0.047132 0.790594 0.143506 0.018768 0.059681 0.087688 0.665195 0.187436 0.058872 0.077300 0.817263 0.046565 0.035590 0.036742 0.809987 0.117681 0.070455 0.045215 0.754873 0.129457 0.123442 0.027695 0.723516 0.125347 0.104029 0.069439 0.636026 0.190506 0.070968 0.197801 0.581172 0.150060 0.147077 0.235294 0.230097 0.387531 Consensus sequence: BMCCCCCGGGGGGGB Reverse complement motif 0.387531 0.235294 0.230097 0.147077 0.070968 0.581172 0.197801 0.150060 0.104029 0.636026 0.069439 0.190506 0.123442 0.723516 0.027695 0.125347 0.070455 0.754873 0.045215 0.129457 0.035590 0.809987 0.036742 0.117681 0.058872 0.817263 0.077300 0.046565 0.059681 0.665195 0.087688 0.187436 0.047132 0.143506 0.790594 0.018768 0.046565 0.077300 0.817263 0.058872 0.117681 0.036742 0.809987 0.035590 0.129457 0.045215 0.754873 0.070455 0.125347 0.027695 0.723516 0.123442 0.305344 0.093638 0.451195 0.149822 0.133123 0.252864 0.374622 0.239392 Consensus sequence: VCCCCCCCGGGGGRB Alignment: BMCCCCCGGGGGGGB -CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 31 Motif name: Pax5 Original motif 0.333333 0.083333 0.333333 0.250000 0.333333 0.000000 0.666667 0.000000 0.333333 0.250000 0.250000 0.166667 0.083333 0.166667 0.416667 0.333333 0.166667 0.583333 0.083333 0.166667 0.583333 0.166667 0.083333 0.166667 0.166667 0.416667 0.250000 0.166667 0.000000 0.250000 0.166667 0.583333 0.083333 0.166667 0.666667 0.083333 0.500000 0.083333 0.250000 0.166667 0.500000 0.000000 0.166667 0.333333 0.000000 0.000000 1.000000 0.000000 0.166667 0.666667 0.083333 0.083333 0.250000 0.000000 0.750000 0.000000 0.083333 0.000000 0.333333 0.583333 0.500000 0.083333 0.416667 0.000000 0.416667 0.083333 0.416667 0.083333 0.166667 0.833333 0.000000 0.000000 0.166667 0.416667 0.416667 0.000000 0.416667 0.000000 0.500000 0.083333 Consensus sequence: DGVBCABTGDWGCGKRRCSR Reserve complement motif 0.416667 0.500000 0.000000 0.083333 0.166667 0.416667 0.416667 0.000000 0.166667 0.000000 0.833333 0.000000 0.083333 0.083333 0.416667 0.416667 0.000000 0.083333 0.416667 0.500000 0.583333 0.000000 0.333333 0.083333 0.250000 0.750000 0.000000 0.000000 0.166667 0.083333 0.666667 0.083333 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.166667 0.500000 0.166667 0.083333 0.250000 0.500000 0.083333 0.666667 0.166667 0.083333 0.583333 0.250000 0.166667 0.000000 0.166667 0.250000 0.416667 0.166667 0.166667 0.166667 0.083333 0.583333 0.166667 0.083333 0.583333 0.166667 0.083333 0.416667 0.166667 0.333333 0.166667 0.250000 0.250000 0.333333 0.333333 0.666667 0.000000 0.000000 0.250000 0.083333 0.333333 0.333333 Consensus sequence: MSGKKRCGCWDCABTGBBCD ************************************************************************ Best Matches for Motif ID 31 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondary Original Motif Original Motif Backward 2 20 0.049954 Species: Mus musculus Original motif 0.477863 0.106306 0.184102 0.231729 0.304951 0.149020 0.361418 0.184612 0.548996 0.056128 0.348902 0.045974 0.385727 0.477782 0.086218 0.050273 0.409556 0.232265 0.173851 0.184328 0.174550 0.312880 0.307123 0.205448 0.850398 0.047204 0.041665 0.060734 0.141234 0.548534 0.142230 0.168002 0.059462 0.026354 0.892948 0.021236 0.053714 0.870297 0.028935 0.047055 0.086273 0.069147 0.805284 0.039296 0.033781 0.573881 0.034115 0.358223 0.035191 0.079663 0.824970 0.060176 0.051830 0.862631 0.019359 0.066180 0.178685 0.015738 0.762485 0.043092 0.058988 0.042615 0.017608 0.880789 0.202382 0.173360 0.284095 0.340163 0.098493 0.234651 0.506524 0.160333 0.109087 0.336204 0.250510 0.304198 0.130945 0.250843 0.177122 0.441090 0.353830 0.138838 0.162784 0.344548 0.114290 0.417163 0.160662 0.307885 Consensus sequence: DDRMHBACGCGYGCGTDGBBDB Reverse complement motif 0.114290 0.160662 0.417163 0.307885 0.344548 0.138838 0.162784 0.353830 0.441090 0.250843 0.177122 0.130945 0.109087 0.250510 0.336204 0.304198 0.098493 0.506524 0.234651 0.160333 0.340163 0.173360 0.284095 0.202382 0.880789 0.042615 0.017608 0.058988 0.178685 0.762485 0.015738 0.043092 0.051830 0.019359 0.862631 0.066180 0.035191 0.824970 0.079663 0.060176 0.033781 0.034115 0.573881 0.358223 0.086273 0.805284 0.069147 0.039296 0.053714 0.028935 0.870297 0.047055 0.059462 0.892948 0.026354 0.021236 0.141234 0.142230 0.548534 0.168002 0.060734 0.047204 0.041665 0.850398 0.174550 0.307123 0.312880 0.205448 0.184328 0.232265 0.173851 0.409556 0.385727 0.086218 0.477782 0.050273 0.045974 0.056128 0.348902 0.548996 0.304951 0.361418 0.149020 0.184612 0.231729 0.106306 0.184102 0.477863 Consensus sequence: BDVBCDACGCKCGCGTBHRKHD Alignment: DDRMHBACGCGYGCGTDGBBDB -DGVBCABTGDWGCGKRRCSR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Original Motif Reverse Complement Forward 1 20 0.052020 Species: Mus musculus Original motif 0.456612 0.057181 0.078281 0.407926 0.460529 0.185506 0.083106 0.270859 0.445717 0.179510 0.239355 0.135417 0.116339 0.145186 0.275331 0.463144 0.239398 0.142078 0.480004 0.138520 0.355157 0.217877 0.284296 0.142670 0.318602 0.444835 0.153321 0.083243 0.609569 0.055866 0.280349 0.054216 0.062297 0.769824 0.027844 0.140035 0.151868 0.019245 0.803188 0.025699 0.011842 0.952534 0.017959 0.017665 0.017665 0.017959 0.952534 0.011842 0.025699 0.803188 0.019245 0.151868 0.140035 0.027844 0.769824 0.062297 0.054216 0.280349 0.055866 0.609569 0.013084 0.624655 0.177956 0.184305 0.287647 0.183527 0.295753 0.233074 0.042309 0.345931 0.198458 0.413301 0.338138 0.266033 0.045367 0.350462 0.302850 0.155320 0.074662 0.467168 0.240926 0.068901 0.283055 0.407118 0.409954 0.183157 0.154186 0.252704 Consensus sequence: WHVBVVMACGCGCGTCDYHWDH Reverse complement motif 0.252704 0.183157 0.154186 0.409954 0.407118 0.068901 0.283055 0.240926 0.467168 0.155320 0.074662 0.302850 0.350462 0.266033 0.045367 0.338138 0.413301 0.345931 0.198458 0.042309 0.287647 0.295753 0.183527 0.233074 0.013084 0.177956 0.624655 0.184305 0.609569 0.280349 0.055866 0.054216 0.140035 0.769824 0.027844 0.062297 0.025699 0.019245 0.803188 0.151868 0.017665 0.952534 0.017959 0.011842 0.011842 0.017959 0.952534 0.017665 0.151868 0.803188 0.019245 0.025699 0.062297 0.027844 0.769824 0.140035 0.054216 0.055866 0.280349 0.609569 0.318602 0.153321 0.444835 0.083243 0.142670 0.217877 0.284296 0.355157 0.239398 0.480004 0.142078 0.138520 0.463144 0.145186 0.275331 0.116339 0.135417 0.179510 0.239355 0.445717 0.270859 0.185506 0.083106 0.460529 0.407926 0.057181 0.078281 0.456612 Consensus sequence: HDWHMHGACGCGCGTRBVVBHW Alignment: WHVBVVMACGCGCGTCDYHWDH DGVBCABTGDWGCGKRRCSR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondary Original Motif Reverse Complement Backward 2 20 0.054276 Species: Mus musculus Original motif 0.533199 0.080715 0.330435 0.055650 0.152031 0.212841 0.110234 0.524893 0.223934 0.264217 0.087037 0.424811 0.115097 0.339994 0.343861 0.201048 0.124993 0.418259 0.365642 0.091106 0.158365 0.292428 0.088361 0.460847 0.165479 0.561778 0.022254 0.250489 0.136873 0.259822 0.579763 0.023543 0.109570 0.747495 0.055128 0.087807 0.061912 0.792986 0.109031 0.036071 0.508703 0.267806 0.169766 0.053725 0.040912 0.838888 0.057470 0.062730 0.330554 0.606077 0.016192 0.047177 0.068079 0.563969 0.029742 0.338209 0.388799 0.291667 0.191284 0.128249 0.183283 0.578079 0.171100 0.067538 0.165163 0.097206 0.631377 0.106253 0.128564 0.435496 0.253275 0.182665 0.103395 0.088222 0.234758 0.573625 0.432879 0.276641 0.155895 0.134585 0.339199 0.148928 0.311036 0.200836 0.211958 0.298526 0.158443 0.331072 Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Reverse complement motif 0.331072 0.298526 0.158443 0.211958 0.200836 0.148928 0.311036 0.339199 0.134585 0.276641 0.155895 0.432879 0.573625 0.088222 0.234758 0.103395 0.128564 0.253275 0.435496 0.182665 0.165163 0.631377 0.097206 0.106253 0.183283 0.171100 0.578079 0.067538 0.128249 0.291667 0.191284 0.388799 0.068079 0.029742 0.563969 0.338209 0.330554 0.016192 0.606077 0.047177 0.040912 0.057470 0.838888 0.062730 0.053725 0.267806 0.169766 0.508703 0.061912 0.109031 0.792986 0.036071 0.109570 0.055128 0.747495 0.087807 0.136873 0.579763 0.259822 0.023543 0.165479 0.022254 0.561778 0.250489 0.460847 0.292428 0.088361 0.158365 0.124993 0.365642 0.418259 0.091106 0.115097 0.343861 0.339994 0.201048 0.424811 0.264217 0.087037 0.223934 0.524893 0.212841 0.110234 0.152031 0.055650 0.080715 0.330435 0.533199 Consensus sequence: HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK -DGVBCABTGDWGCGKRRCSR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Reverse Complement Reverse Complement Forward 3 20 0.056064 Species: Mus musculus Original motif 0.399785 0.446658 0.111435 0.042122 0.535175 0.103991 0.089706 0.271128 0.078171 0.387987 0.375083 0.158759 0.309001 0.519142 0.070618 0.101239 0.201844 0.255818 0.323149 0.219190 0.534101 0.109845 0.235026 0.121028 0.656038 0.037473 0.261484 0.045006 0.315713 0.164290 0.471815 0.048182 0.651960 0.009412 0.328237 0.010391 0.937365 0.017313 0.007516 0.037807 0.019983 0.044238 0.012387 0.923392 0.061195 0.021485 0.881645 0.035675 0.017521 0.952998 0.013139 0.016342 0.254160 0.029735 0.493023 0.223082 0.239200 0.593324 0.114503 0.052973 0.610822 0.071539 0.099169 0.218470 0.166610 0.389712 0.204400 0.239278 0.227752 0.361626 0.178497 0.232125 0.537030 0.182466 0.026035 0.254470 0.235902 0.151006 0.043788 0.569304 0.081851 0.250397 0.590059 0.077693 0.340417 0.189613 0.272075 0.197895 Consensus sequence: MWSMBAARRATGCDCABHATGD Reverse complement motif 0.197895 0.189613 0.272075 0.340417 0.081851 0.590059 0.250397 0.077693 0.569304 0.151006 0.043788 0.235902 0.254470 0.182466 0.026035 0.537030 0.227752 0.178497 0.361626 0.232125 0.166610 0.204400 0.389712 0.239278 0.218470 0.071539 0.099169 0.610822 0.239200 0.114503 0.593324 0.052973 0.254160 0.493023 0.029735 0.223082 0.017521 0.013139 0.952998 0.016342 0.061195 0.881645 0.021485 0.035675 0.923392 0.044238 0.012387 0.019983 0.037807 0.017313 0.007516 0.937365 0.010391 0.009412 0.328237 0.651960 0.315713 0.471815 0.164290 0.048182 0.045006 0.037473 0.261484 0.656038 0.121028 0.109845 0.235026 0.534101 0.201844 0.323149 0.255818 0.219190 0.309001 0.070618 0.519142 0.101239 0.078171 0.375083 0.387987 0.158759 0.271128 0.103991 0.089706 0.535175 0.399785 0.111435 0.446658 0.042122 Consensus sequence: DCATDBTGHGCATKMTTBRSWR Alignment: DCATDBTGHGCATKMTTBRSWR --MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Original Motif Reverse Complement Forward 1 20 0.059567 Species: Mus musculus Original motif 0.168550 0.345968 0.396524 0.088958 0.038113 0.360882 0.114042 0.486963 0.349356 0.180599 0.051416 0.418629 0.258773 0.332518 0.244932 0.163778 0.371663 0.208591 0.263136 0.156609 0.225440 0.321741 0.175932 0.276887 0.100827 0.656850 0.018644 0.223679 0.494140 0.155427 0.327424 0.023009 0.105642 0.805846 0.027712 0.060800 0.065110 0.845072 0.058046 0.031772 0.649343 0.110180 0.180680 0.059797 0.064269 0.853604 0.066860 0.015268 0.437421 0.533797 0.016833 0.011948 0.121694 0.787708 0.016177 0.074421 0.625382 0.066925 0.266070 0.041623 0.117819 0.608153 0.165139 0.108889 0.145639 0.102001 0.604926 0.147434 0.521188 0.184986 0.064607 0.229219 0.180371 0.274237 0.096591 0.448801 0.071055 0.455813 0.332817 0.140315 0.084503 0.199982 0.448293 0.267222 0.389451 0.169545 0.155507 0.285497 0.424314 0.227621 0.101210 0.246855 Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Reverse complement motif 0.246855 0.227621 0.101210 0.424314 0.285497 0.169545 0.155507 0.389451 0.084503 0.448293 0.199982 0.267222 0.071055 0.332817 0.455813 0.140315 0.448801 0.274237 0.096591 0.180371 0.229219 0.184986 0.064607 0.521188 0.145639 0.604926 0.102001 0.147434 0.117819 0.165139 0.608153 0.108889 0.041623 0.066925 0.266070 0.625382 0.121694 0.016177 0.787708 0.074421 0.437421 0.016833 0.533797 0.011948 0.064269 0.066860 0.853604 0.015268 0.059797 0.110180 0.180680 0.649343 0.065110 0.058046 0.845072 0.031772 0.105642 0.027712 0.805846 0.060800 0.023009 0.155427 0.327424 0.494140 0.100827 0.018644 0.656850 0.223679 0.225440 0.175932 0.321741 0.276887 0.156609 0.208591 0.263136 0.371663 0.258773 0.244932 0.332518 0.163778 0.418629 0.180599 0.051416 0.349356 0.486963 0.360882 0.114042 0.038113 0.168550 0.396524 0.345968 0.088958 Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV Alignment: HHBSHTCGTGRGTGGKGDBVWMV DGVBCABTGDWGCGKRRCSR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 32 Motif name: ArntAhr Original motif 0.125000 0.333333 0.083333 0.458333 0.000000 0.000000 0.958333 0.041667 0.000000 0.958333 0.000000 0.041667 0.000000 0.000000 0.958333 0.041667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: YGCGTG Reserve complement motif 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.958333 0.000000 0.041667 0.000000 0.000000 0.958333 0.041667 0.000000 0.958333 0.000000 0.041667 0.458333 0.333333 0.083333 0.125000 Consensus sequence: CACGCM ************************************************************************ Best Matches for Motif ID 32 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Reverse Complement Forward 7 6 0.000000 Species: Mus musculus Original motif 0.104824 0.412716 0.254506 0.227955 0.644922 0.065476 0.140479 0.149122 0.201205 0.166164 0.347131 0.285501 0.360606 0.256316 0.150766 0.232313 0.199831 0.240681 0.279350 0.280137 0.234308 0.204076 0.321306 0.240310 0.274112 0.462435 0.111425 0.152028 0.067070 0.717501 0.073934 0.141496 0.106745 0.084442 0.658566 0.150247 0.025128 0.967053 0.003585 0.004234 0.006412 0.982989 0.003227 0.007371 0.009588 0.877620 0.002571 0.110221 0.621521 0.355443 0.015669 0.007366 0.002600 0.980275 0.004191 0.012934 0.118773 0.026658 0.783843 0.070725 0.022358 0.822101 0.024684 0.130857 0.713212 0.080912 0.128793 0.077084 0.166568 0.250955 0.107934 0.474544 0.225040 0.222494 0.163301 0.389166 0.268976 0.223206 0.265314 0.242504 0.137052 0.229058 0.148439 0.485451 0.135819 0.304550 0.141994 0.417637 0.272440 0.319501 0.230580 0.177478 Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Reverse complement motif 0.272440 0.230580 0.319501 0.177478 0.417637 0.304550 0.141994 0.135819 0.485451 0.229058 0.148439 0.137052 0.242504 0.223206 0.265314 0.268976 0.389166 0.222494 0.163301 0.225040 0.474544 0.250955 0.107934 0.166568 0.077084 0.080912 0.128793 0.713212 0.022358 0.024684 0.822101 0.130857 0.118773 0.783843 0.026658 0.070725 0.002600 0.004191 0.980275 0.012934 0.007366 0.355443 0.015669 0.621521 0.009588 0.002571 0.877620 0.110221 0.006412 0.003227 0.982989 0.007371 0.025128 0.003585 0.967053 0.004234 0.106745 0.658566 0.084442 0.150247 0.067070 0.073934 0.717501 0.141496 0.274112 0.111425 0.462435 0.152028 0.234308 0.321306 0.204076 0.240310 0.280137 0.240681 0.279350 0.199831 0.232313 0.256316 0.150766 0.360606 0.201205 0.347131 0.166164 0.285501 0.149122 0.065476 0.140479 0.644922 0.104824 0.254506 0.412716 0.227955 Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB ------YGCGTG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_secondary Reverse Complement Reverse Complement Backward 5 6 0.001836 Species: Mus musculus Original motif 0.146334 0.312326 0.244281 0.297060 0.493155 0.092609 0.162506 0.251729 0.503593 0.059863 0.077561 0.358984 0.763321 0.015264 0.213114 0.008301 0.012415 0.025932 0.945502 0.016151 0.006713 0.015221 0.950098 0.027968 0.062415 0.834303 0.054500 0.048782 0.011010 0.020677 0.928821 0.039493 0.012785 0.024162 0.145822 0.817231 0.133595 0.033962 0.787876 0.044567 0.140697 0.180481 0.428253 0.250570 0.036281 0.806412 0.033510 0.123797 0.157910 0.408607 0.122427 0.311055 0.292185 0.260017 0.197515 0.250283 0.251107 0.124480 0.359447 0.264967 Consensus sequence: BDWAGGCGTGBCHHD Reverse complement motif 0.251107 0.359447 0.124480 0.264967 0.250283 0.260017 0.197515 0.292185 0.157910 0.122427 0.408607 0.311055 0.036281 0.033510 0.806412 0.123797 0.140697 0.428253 0.180481 0.250570 0.133595 0.787876 0.033962 0.044567 0.817231 0.024162 0.145822 0.012785 0.011010 0.928821 0.020677 0.039493 0.062415 0.054500 0.834303 0.048782 0.006713 0.950098 0.015221 0.027968 0.012415 0.945502 0.025932 0.016151 0.008301 0.015264 0.213114 0.763321 0.358984 0.059863 0.077561 0.503593 0.251729 0.092609 0.162506 0.493155 0.146334 0.244281 0.312326 0.297060 Consensus sequence: HHDGBCACGCCTWDB Alignment: HHDGBCACGCCTWDB -----CACGCM---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Original Motif Reverse Complement Backward 5 6 0.003480 Species: Mus musculus Original motif 0.127991 0.202889 0.399822 0.269298 0.156940 0.244015 0.182364 0.416681 0.046494 0.050598 0.744311 0.158596 0.196142 0.365183 0.183389 0.255286 0.019306 0.946805 0.015210 0.018680 0.924839 0.022113 0.027620 0.025428 0.007478 0.672138 0.027789 0.292595 0.046702 0.026044 0.906146 0.021107 0.117335 0.610863 0.025132 0.246670 0.044431 0.053581 0.722748 0.179240 0.543713 0.149809 0.190030 0.116447 0.241148 0.722386 0.022547 0.013919 0.265412 0.113032 0.270602 0.350954 0.226186 0.143504 0.332746 0.297564 Consensus sequence: BBGHCACGCGACDD Reverse complement motif 0.226186 0.332746 0.143504 0.297564 0.350954 0.113032 0.270602 0.265412 0.241148 0.022547 0.722386 0.013919 0.116447 0.149809 0.190030 0.543713 0.044431 0.722748 0.053581 0.179240 0.117335 0.025132 0.610863 0.246670 0.046702 0.906146 0.026044 0.021107 0.007478 0.027789 0.672138 0.292595 0.025428 0.022113 0.027620 0.924839 0.019306 0.015210 0.946805 0.018680 0.196142 0.183389 0.365183 0.255286 0.046494 0.744311 0.050598 0.158596 0.416681 0.244015 0.182364 0.156940 0.127991 0.399822 0.202889 0.269298 Consensus sequence: HDGTCGCGTGDCVB Alignment: HDGTCGCGTGDCVB ----YGCGTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_primary Reverse Complement Reverse Complement Forward 8 6 0.005262 Species: Mus musculus Original motif 0.397468 0.109792 0.196359 0.296381 0.102928 0.480888 0.250249 0.165936 0.141925 0.173586 0.377365 0.307124 0.337385 0.368225 0.188518 0.105872 0.354789 0.067393 0.345343 0.232475 0.299392 0.109745 0.215552 0.375311 0.242937 0.170264 0.189245 0.397554 0.461680 0.013180 0.358677 0.166463 0.067089 0.063048 0.008045 0.861819 0.431756 0.128671 0.436022 0.003551 0.006559 0.001814 0.988272 0.003355 0.012929 0.983600 0.001468 0.002003 0.018768 0.000766 0.976433 0.004033 0.003776 0.005554 0.002991 0.987679 0.002737 0.981589 0.009028 0.006646 0.126509 0.273800 0.413161 0.186530 0.100613 0.337225 0.212034 0.350128 0.123741 0.284683 0.060914 0.530661 0.204454 0.143533 0.100462 0.551551 0.202290 0.482197 0.148368 0.167145 0.191625 0.101330 0.607860 0.099185 0.507546 0.086532 0.219554 0.186368 Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA Reverse complement motif 0.186368 0.086532 0.219554 0.507546 0.191625 0.607860 0.101330 0.099185 0.202290 0.148368 0.482197 0.167145 0.551551 0.143533 0.100462 0.204454 0.530661 0.284683 0.060914 0.123741 0.350128 0.337225 0.212034 0.100613 0.126509 0.413161 0.273800 0.186530 0.002737 0.009028 0.981589 0.006646 0.987679 0.005554 0.002991 0.003776 0.018768 0.976433 0.000766 0.004033 0.012929 0.001468 0.983600 0.002003 0.006559 0.988272 0.001814 0.003355 0.431756 0.436022 0.128671 0.003551 0.861819 0.063048 0.008045 0.067089 0.166463 0.013180 0.358677 0.461680 0.397554 0.170264 0.189245 0.242937 0.375311 0.109745 0.215552 0.299392 0.232475 0.067393 0.345343 0.354789 0.337385 0.188518 0.368225 0.105872 0.141925 0.377365 0.173586 0.307124 0.102928 0.250249 0.480888 0.165936 0.296381 0.109792 0.196359 0.397468 Consensus sequence: TCDAMVBGACGCMAKDDDVBBD Alignment: TCDAMVBGACGCMAKDDDVBBD -------CACGCM--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_second Original Motif Reverse Complement Backward 8 6 0.005582 Species: Mus musculus Original motif 0.360404 0.193218 0.248888 0.197490 0.286498 0.224597 0.426555 0.062349 0.347032 0.440548 0.033161 0.179259 0.337062 0.193658 0.385751 0.083529 0.108793 0.005723 0.878300 0.007184 0.015151 0.973406 0.009324 0.002118 0.972117 0.003915 0.019783 0.004185 0.010144 0.980912 0.003106 0.005839 0.974864 0.007532 0.015914 0.001691 0.012441 0.939195 0.029256 0.019108 0.759620 0.106164 0.073819 0.060397 0.157234 0.818234 0.007449 0.017083 0.050076 0.063608 0.505171 0.381144 0.131903 0.538163 0.124608 0.205325 0.367623 0.286526 0.240931 0.104919 0.357798 0.317606 0.097711 0.226885 Consensus sequence: DVMVGCACACACKCVH Reverse complement motif 0.226885 0.317606 0.097711 0.357798 0.104919 0.286526 0.240931 0.367623 0.131903 0.124608 0.538163 0.205325 0.050076 0.505171 0.063608 0.381144 0.157234 0.007449 0.818234 0.017083 0.060397 0.106164 0.073819 0.759620 0.012441 0.029256 0.939195 0.019108 0.001691 0.007532 0.015914 0.974864 0.010144 0.003106 0.980912 0.005839 0.004185 0.003915 0.019783 0.972117 0.015151 0.009324 0.973406 0.002118 0.108793 0.878300 0.005723 0.007184 0.337062 0.385751 0.193658 0.083529 0.347032 0.033161 0.440548 0.179259 0.286498 0.426555 0.224597 0.062349 0.197490 0.193218 0.248888 0.360404 Consensus sequence: HBGYGTGTGTGCVRVD Alignment: HBGYGTGTGTGCVRVD ---YGCGTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 33 Motif name: Mycn Original motif 0.349315 0.363014 0.143836 0.143836 0.089041 0.388128 0.447489 0.075342 0.015982 0.984018 0.000000 0.000000 0.945205 0.000000 0.041096 0.013699 0.000000 0.961187 0.018265 0.020548 0.070776 0.002283 0.924658 0.002283 0.054795 0.221461 0.004566 0.719178 0.000000 0.000000 0.938356 0.061644 0.061644 0.111872 0.739726 0.086758 0.139269 0.605023 0.091324 0.164384 Consensus sequence: HSCACGTGGC Reserve complement motif 0.139269 0.091324 0.605023 0.164384 0.061644 0.739726 0.111872 0.086758 0.000000 0.938356 0.000000 0.061644 0.719178 0.221461 0.004566 0.054795 0.070776 0.924658 0.002283 0.002283 0.000000 0.018265 0.961187 0.020548 0.013699 0.000000 0.041096 0.945205 0.015982 0.000000 0.984018 0.000000 0.089041 0.447489 0.388128 0.075342 0.349315 0.143836 0.363014 0.143836 Consensus sequence: GCCACGTGSD ************************************************************************ Best Matches for Motif ID 33 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_primary Original Motif Original Motif Forward 3 10 0.000000 Species: Mus musculus Original motif 0.234855 0.152539 0.301720 0.310886 0.199226 0.147959 0.439250 0.213565 0.582926 0.274768 0.075866 0.066440 0.138829 0.475428 0.305884 0.079859 0.024979 0.969691 0.001811 0.003520 0.966345 0.003728 0.022320 0.007607 0.000598 0.907006 0.008160 0.084236 0.084236 0.008160 0.907006 0.000598 0.007607 0.022320 0.003728 0.966345 0.003520 0.001811 0.969691 0.024979 0.149140 0.241218 0.389598 0.220044 0.066440 0.075866 0.274768 0.582926 0.186990 0.346199 0.250066 0.216745 0.273437 0.225889 0.300738 0.199936 0.160893 0.111177 0.477963 0.249968 0.171790 0.101256 0.424580 0.302375 Consensus sequence: DDASCACGTGBTBVDD Reverse complement motif 0.171790 0.424580 0.101256 0.302375 0.160893 0.477963 0.111177 0.249968 0.273437 0.300738 0.225889 0.199936 0.186990 0.250066 0.346199 0.216745 0.582926 0.075866 0.274768 0.066440 0.149140 0.389598 0.241218 0.220044 0.003520 0.969691 0.001811 0.024979 0.966345 0.022320 0.003728 0.007607 0.084236 0.907006 0.008160 0.000598 0.000598 0.008160 0.907006 0.084236 0.007607 0.003728 0.022320 0.966345 0.024979 0.001811 0.969691 0.003520 0.138829 0.305884 0.475428 0.079859 0.066440 0.274768 0.075866 0.582926 0.199226 0.439250 0.147959 0.213565 0.310886 0.152539 0.301720 0.234855 Consensus sequence: HHVBABCACGTGSTHD Alignment: DDASCACGTGBTBVDD --HSCACGTGGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Reverse Complement Reverse Complement Backward 7 10 0.007838 Species: Mus musculus Original motif 0.120938 0.344851 0.124072 0.410138 0.220931 0.169844 0.422396 0.186829 0.127752 0.260812 0.103811 0.507625 0.140641 0.405473 0.287668 0.166218 0.296957 0.155579 0.301094 0.246370 0.219647 0.287193 0.154072 0.339087 0.049294 0.026059 0.121789 0.802859 0.520042 0.289284 0.173423 0.017251 0.049190 0.943472 0.004308 0.003030 0.902609 0.006767 0.074770 0.015854 0.003221 0.971329 0.005512 0.019937 0.019937 0.005512 0.971329 0.003221 0.015854 0.074770 0.006767 0.902609 0.003030 0.004308 0.943472 0.049190 0.003497 0.088920 0.685942 0.221641 0.802859 0.121789 0.026059 0.049294 0.334544 0.155170 0.275193 0.235092 0.275957 0.132104 0.454982 0.136957 0.134097 0.254352 0.422940 0.188611 0.396163 0.432784 0.051281 0.119772 0.276474 0.115627 0.419844 0.188056 0.160759 0.088061 0.649863 0.101318 0.203314 0.166595 0.106821 0.523270 Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Reverse complement motif 0.523270 0.166595 0.106821 0.203314 0.160759 0.649863 0.088061 0.101318 0.276474 0.419844 0.115627 0.188056 0.396163 0.051281 0.432784 0.119772 0.134097 0.422940 0.254352 0.188611 0.275957 0.454982 0.132104 0.136957 0.235092 0.155170 0.275193 0.334544 0.049294 0.121789 0.026059 0.802859 0.003497 0.685942 0.088920 0.221641 0.003030 0.943472 0.004308 0.049190 0.902609 0.074770 0.006767 0.015854 0.019937 0.971329 0.005512 0.003221 0.003221 0.005512 0.971329 0.019937 0.015854 0.006767 0.074770 0.902609 0.049190 0.004308 0.943472 0.003030 0.017251 0.289284 0.173423 0.520042 0.802859 0.026059 0.121789 0.049294 0.339087 0.287193 0.154072 0.219647 0.296957 0.301094 0.155579 0.246370 0.140641 0.287668 0.405473 0.166218 0.507625 0.260812 0.103811 0.127752 0.220931 0.422396 0.169844 0.186829 0.410138 0.344851 0.124072 0.120938 Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM -------GCCACGTGSD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Reverse Complement Reverse Complement Backward 7 10 0.013286 Species: Mus musculus Original motif 0.347837 0.112349 0.403713 0.136102 0.298329 0.175329 0.324534 0.201809 0.421791 0.222553 0.113615 0.242041 0.387506 0.130670 0.161435 0.320389 0.197183 0.244864 0.304611 0.253342 0.345884 0.188786 0.278290 0.187041 0.228203 0.142148 0.408269 0.221381 0.037126 0.006772 0.231775 0.724328 0.055214 0.942800 0.001192 0.000794 0.974119 0.004466 0.015535 0.005880 0.000300 0.958145 0.007498 0.034056 0.034056 0.007498 0.958145 0.000300 0.005880 0.015535 0.004466 0.974119 0.000794 0.001192 0.942800 0.055214 0.724328 0.231775 0.006772 0.037126 0.015720 0.466476 0.315208 0.202596 0.173670 0.355170 0.210710 0.260449 0.407419 0.261539 0.134430 0.196612 0.351478 0.209698 0.262426 0.176399 0.207869 0.284582 0.198951 0.308598 0.434482 0.113724 0.184408 0.267386 0.211144 0.363745 0.173978 0.251133 Consensus sequence: RDHDBVDTCACGTGASBHVHDH Reverse complement motif 0.211144 0.173978 0.363745 0.251133 0.267386 0.113724 0.184408 0.434482 0.308598 0.284582 0.198951 0.207869 0.176399 0.209698 0.262426 0.351478 0.196612 0.261539 0.134430 0.407419 0.173670 0.210710 0.355170 0.260449 0.015720 0.315208 0.466476 0.202596 0.037126 0.231775 0.006772 0.724328 0.000794 0.942800 0.001192 0.055214 0.974119 0.015535 0.004466 0.005880 0.034056 0.958145 0.007498 0.000300 0.000300 0.007498 0.958145 0.034056 0.005880 0.004466 0.015535 0.974119 0.055214 0.001192 0.942800 0.000794 0.724328 0.006772 0.231775 0.037126 0.228203 0.408269 0.142148 0.221381 0.187041 0.188786 0.278290 0.345884 0.197183 0.304611 0.244864 0.253342 0.320389 0.130670 0.161435 0.387506 0.242041 0.222553 0.113615 0.421791 0.298329 0.324534 0.175329 0.201809 0.347837 0.403713 0.112349 0.136102 Consensus sequence: DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM ------GCCACGTGSD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Reverse Complement Original Motif Forward 4 10 0.022793 Species: Mus musculus Original motif 0.306209 0.232705 0.244475 0.216611 0.165668 0.171480 0.222584 0.440269 0.213008 0.429038 0.156385 0.201569 0.283226 0.329518 0.160795 0.226461 0.439156 0.283517 0.251270 0.026056 0.014994 0.980987 0.000714 0.003304 0.975741 0.020182 0.002909 0.001168 0.000926 0.191353 0.801648 0.006073 0.015382 0.090853 0.893043 0.000721 0.001549 0.005912 0.001713 0.990826 0.004000 0.000857 0.989667 0.005475 0.016957 0.663726 0.148127 0.171190 0.299047 0.091156 0.448649 0.161148 0.354701 0.214677 0.236757 0.193865 0.399446 0.174508 0.200036 0.226009 0.303545 0.277435 0.200094 0.218926 0.380242 0.148876 0.163367 0.307514 Consensus sequence: VBHHVCAGGTGCDVDHD Reverse complement motif 0.307514 0.148876 0.163367 0.380242 0.218926 0.277435 0.200094 0.303545 0.226009 0.174508 0.200036 0.399446 0.193865 0.214677 0.236757 0.354701 0.299047 0.448649 0.091156 0.161148 0.016957 0.148127 0.663726 0.171190 0.004000 0.989667 0.000857 0.005475 0.990826 0.005912 0.001713 0.001549 0.015382 0.893043 0.090853 0.000721 0.000926 0.801648 0.191353 0.006073 0.001168 0.020182 0.002909 0.975741 0.014994 0.000714 0.980987 0.003304 0.026056 0.283517 0.251270 0.439156 0.283226 0.160795 0.329518 0.226461 0.213008 0.156385 0.429038 0.201569 0.440269 0.171480 0.222584 0.165668 0.216611 0.232705 0.244475 0.306209 Consensus sequence: DHDBHGCACCTGBDDVB Alignment: VBHHVCAGGTGCDVDHD ---GCCACGTGSD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Original Motif Original Motif Forward 3 10 0.025701 Species: Mus musculus Original motif 0.127991 0.202889 0.399822 0.269298 0.156940 0.244015 0.182364 0.416681 0.046494 0.050598 0.744311 0.158596 0.196142 0.365183 0.183389 0.255286 0.019306 0.946805 0.015210 0.018680 0.924839 0.022113 0.027620 0.025428 0.007478 0.672138 0.027789 0.292595 0.046702 0.026044 0.906146 0.021107 0.117335 0.610863 0.025132 0.246670 0.044431 0.053581 0.722748 0.179240 0.543713 0.149809 0.190030 0.116447 0.241148 0.722386 0.022547 0.013919 0.265412 0.113032 0.270602 0.350954 0.226186 0.143504 0.332746 0.297564 Consensus sequence: BBGHCACGCGACDD Reverse complement motif 0.226186 0.332746 0.143504 0.297564 0.350954 0.113032 0.270602 0.265412 0.241148 0.022547 0.722386 0.013919 0.116447 0.149809 0.190030 0.543713 0.044431 0.722748 0.053581 0.179240 0.117335 0.025132 0.610863 0.246670 0.046702 0.906146 0.026044 0.021107 0.007478 0.027789 0.672138 0.292595 0.025428 0.022113 0.027620 0.924839 0.019306 0.015210 0.946805 0.018680 0.196142 0.183389 0.365183 0.255286 0.046494 0.744311 0.050598 0.158596 0.416681 0.244015 0.182364 0.156940 0.127991 0.399822 0.202889 0.269298 Consensus sequence: HDGTCGCGTGDCVB Alignment: BBGHCACGCGACDD --HSCACGTGGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 34 Motif name: Myc Original motif 0.295154 0.422907 0.158590 0.123348 0.149780 0.233480 0.572687 0.044053 0.035242 0.964758 0.000000 0.000000 0.955947 0.017621 0.022026 0.004405 0.000000 0.933921 0.013216 0.052863 0.083700 0.008811 0.898678 0.008811 0.039648 0.193833 0.000000 0.766520 0.000000 0.008811 0.951542 0.039648 0.000000 0.074890 0.806167 0.118943 0.198238 0.471366 0.105727 0.224670 Consensus sequence: VGCACGTGGH Reserve complement motif 0.198238 0.105727 0.471366 0.224670 0.000000 0.806167 0.074890 0.118943 0.000000 0.951542 0.008811 0.039648 0.766520 0.193833 0.000000 0.039648 0.083700 0.898678 0.008811 0.008811 0.000000 0.013216 0.933921 0.052863 0.004405 0.017621 0.022026 0.955947 0.035242 0.000000 0.964758 0.000000 0.149780 0.572687 0.233480 0.044053 0.295154 0.158590 0.422907 0.123348 Consensus sequence: DCCACGTGCV ************************************************************************ Best Matches for Motif ID 34 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_primary Original Motif Original Motif Backward 5 10 0.000000 Species: Mus musculus Original motif 0.234855 0.152539 0.301720 0.310886 0.199226 0.147959 0.439250 0.213565 0.582926 0.274768 0.075866 0.066440 0.138829 0.475428 0.305884 0.079859 0.024979 0.969691 0.001811 0.003520 0.966345 0.003728 0.022320 0.007607 0.000598 0.907006 0.008160 0.084236 0.084236 0.008160 0.907006 0.000598 0.007607 0.022320 0.003728 0.966345 0.003520 0.001811 0.969691 0.024979 0.149140 0.241218 0.389598 0.220044 0.066440 0.075866 0.274768 0.582926 0.186990 0.346199 0.250066 0.216745 0.273437 0.225889 0.300738 0.199936 0.160893 0.111177 0.477963 0.249968 0.171790 0.101256 0.424580 0.302375 Consensus sequence: DDASCACGTGBTBVDD Reverse complement motif 0.171790 0.424580 0.101256 0.302375 0.160893 0.477963 0.111177 0.249968 0.273437 0.300738 0.225889 0.199936 0.186990 0.250066 0.346199 0.216745 0.582926 0.075866 0.274768 0.066440 0.149140 0.389598 0.241218 0.220044 0.003520 0.969691 0.001811 0.024979 0.966345 0.022320 0.003728 0.007607 0.084236 0.907006 0.008160 0.000598 0.000598 0.008160 0.907006 0.084236 0.007607 0.003728 0.022320 0.966345 0.024979 0.001811 0.969691 0.003520 0.138829 0.305884 0.475428 0.079859 0.066440 0.274768 0.075866 0.582926 0.199226 0.439250 0.147959 0.213565 0.310886 0.152539 0.301720 0.234855 Consensus sequence: HHVBABCACGTGSTHD Alignment: DDASCACGTGBTBVDD --VGCACGTGGH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Reverse Complement Reverse Complement Backward 7 10 0.006319 Species: Mus musculus Original motif 0.120938 0.344851 0.124072 0.410138 0.220931 0.169844 0.422396 0.186829 0.127752 0.260812 0.103811 0.507625 0.140641 0.405473 0.287668 0.166218 0.296957 0.155579 0.301094 0.246370 0.219647 0.287193 0.154072 0.339087 0.049294 0.026059 0.121789 0.802859 0.520042 0.289284 0.173423 0.017251 0.049190 0.943472 0.004308 0.003030 0.902609 0.006767 0.074770 0.015854 0.003221 0.971329 0.005512 0.019937 0.019937 0.005512 0.971329 0.003221 0.015854 0.074770 0.006767 0.902609 0.003030 0.004308 0.943472 0.049190 0.003497 0.088920 0.685942 0.221641 0.802859 0.121789 0.026059 0.049294 0.334544 0.155170 0.275193 0.235092 0.275957 0.132104 0.454982 0.136957 0.134097 0.254352 0.422940 0.188611 0.396163 0.432784 0.051281 0.119772 0.276474 0.115627 0.419844 0.188056 0.160759 0.088061 0.649863 0.101318 0.203314 0.166595 0.106821 0.523270 Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Reverse complement motif 0.523270 0.166595 0.106821 0.203314 0.160759 0.649863 0.088061 0.101318 0.276474 0.419844 0.115627 0.188056 0.396163 0.051281 0.432784 0.119772 0.134097 0.422940 0.254352 0.188611 0.275957 0.454982 0.132104 0.136957 0.235092 0.155170 0.275193 0.334544 0.049294 0.121789 0.026059 0.802859 0.003497 0.685942 0.088920 0.221641 0.003030 0.943472 0.004308 0.049190 0.902609 0.074770 0.006767 0.015854 0.019937 0.971329 0.005512 0.003221 0.003221 0.005512 0.971329 0.019937 0.015854 0.006767 0.074770 0.902609 0.049190 0.004308 0.943472 0.003030 0.017251 0.289284 0.173423 0.520042 0.802859 0.026059 0.121789 0.049294 0.339087 0.287193 0.154072 0.219647 0.296957 0.301094 0.155579 0.246370 0.140641 0.287668 0.405473 0.166218 0.507625 0.260812 0.103811 0.127752 0.220931 0.422396 0.169844 0.186829 0.410138 0.344851 0.124072 0.120938 Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM -------DCCACGTGCV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Reverse Complement Reverse Complement Backward 7 10 0.008217 Species: Mus musculus Original motif 0.347837 0.112349 0.403713 0.136102 0.298329 0.175329 0.324534 0.201809 0.421791 0.222553 0.113615 0.242041 0.387506 0.130670 0.161435 0.320389 0.197183 0.244864 0.304611 0.253342 0.345884 0.188786 0.278290 0.187041 0.228203 0.142148 0.408269 0.221381 0.037126 0.006772 0.231775 0.724328 0.055214 0.942800 0.001192 0.000794 0.974119 0.004466 0.015535 0.005880 0.000300 0.958145 0.007498 0.034056 0.034056 0.007498 0.958145 0.000300 0.005880 0.015535 0.004466 0.974119 0.000794 0.001192 0.942800 0.055214 0.724328 0.231775 0.006772 0.037126 0.015720 0.466476 0.315208 0.202596 0.173670 0.355170 0.210710 0.260449 0.407419 0.261539 0.134430 0.196612 0.351478 0.209698 0.262426 0.176399 0.207869 0.284582 0.198951 0.308598 0.434482 0.113724 0.184408 0.267386 0.211144 0.363745 0.173978 0.251133 Consensus sequence: RDHDBVDTCACGTGASBHVHDH Reverse complement motif 0.211144 0.173978 0.363745 0.251133 0.267386 0.113724 0.184408 0.434482 0.308598 0.284582 0.198951 0.207869 0.176399 0.209698 0.262426 0.351478 0.196612 0.261539 0.134430 0.407419 0.173670 0.210710 0.355170 0.260449 0.015720 0.315208 0.466476 0.202596 0.037126 0.231775 0.006772 0.724328 0.000794 0.942800 0.001192 0.055214 0.974119 0.015535 0.004466 0.005880 0.034056 0.958145 0.007498 0.000300 0.000300 0.007498 0.958145 0.034056 0.005880 0.004466 0.015535 0.974119 0.055214 0.001192 0.942800 0.000794 0.724328 0.006772 0.231775 0.037126 0.228203 0.408269 0.142148 0.221381 0.187041 0.188786 0.278290 0.345884 0.197183 0.304611 0.244864 0.253342 0.320389 0.130670 0.161435 0.387506 0.242041 0.222553 0.113615 0.421791 0.298329 0.324534 0.175329 0.201809 0.347837 0.403713 0.112349 0.136102 Consensus sequence: DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM ------DCCACGTGCV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Original Motif Reverse Complement Backward 4 10 0.014001 Species: Mus musculus Original motif 0.306209 0.232705 0.244475 0.216611 0.165668 0.171480 0.222584 0.440269 0.213008 0.429038 0.156385 0.201569 0.283226 0.329518 0.160795 0.226461 0.439156 0.283517 0.251270 0.026056 0.014994 0.980987 0.000714 0.003304 0.975741 0.020182 0.002909 0.001168 0.000926 0.191353 0.801648 0.006073 0.015382 0.090853 0.893043 0.000721 0.001549 0.005912 0.001713 0.990826 0.004000 0.000857 0.989667 0.005475 0.016957 0.663726 0.148127 0.171190 0.299047 0.091156 0.448649 0.161148 0.354701 0.214677 0.236757 0.193865 0.399446 0.174508 0.200036 0.226009 0.303545 0.277435 0.200094 0.218926 0.380242 0.148876 0.163367 0.307514 Consensus sequence: VBHHVCAGGTGCDVDHD Reverse complement motif 0.307514 0.148876 0.163367 0.380242 0.218926 0.277435 0.200094 0.303545 0.226009 0.174508 0.200036 0.399446 0.193865 0.214677 0.236757 0.354701 0.299047 0.448649 0.091156 0.161148 0.016957 0.148127 0.663726 0.171190 0.004000 0.989667 0.000857 0.005475 0.990826 0.005912 0.001713 0.001549 0.015382 0.893043 0.090853 0.000721 0.000926 0.801648 0.191353 0.006073 0.001168 0.020182 0.002909 0.975741 0.014994 0.000714 0.980987 0.003304 0.026056 0.283517 0.251270 0.439156 0.283226 0.160795 0.329518 0.226461 0.213008 0.156385 0.429038 0.201569 0.440269 0.171480 0.222584 0.165668 0.216611 0.232705 0.244475 0.306209 Consensus sequence: DHDBHGCACCTGBDDVB Alignment: DHDBHGCACCTGBDDVB ----VGCACGTGGH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Original Motif Original Motif Backward 3 10 0.030891 Species: Mus musculus Original motif 0.127991 0.202889 0.399822 0.269298 0.156940 0.244015 0.182364 0.416681 0.046494 0.050598 0.744311 0.158596 0.196142 0.365183 0.183389 0.255286 0.019306 0.946805 0.015210 0.018680 0.924839 0.022113 0.027620 0.025428 0.007478 0.672138 0.027789 0.292595 0.046702 0.026044 0.906146 0.021107 0.117335 0.610863 0.025132 0.246670 0.044431 0.053581 0.722748 0.179240 0.543713 0.149809 0.190030 0.116447 0.241148 0.722386 0.022547 0.013919 0.265412 0.113032 0.270602 0.350954 0.226186 0.143504 0.332746 0.297564 Consensus sequence: BBGHCACGCGACDD Reverse complement motif 0.226186 0.332746 0.143504 0.297564 0.350954 0.113032 0.270602 0.265412 0.241148 0.022547 0.722386 0.013919 0.116447 0.149809 0.190030 0.543713 0.044431 0.722748 0.053581 0.179240 0.117335 0.025132 0.610863 0.246670 0.046702 0.906146 0.026044 0.021107 0.007478 0.027789 0.672138 0.292595 0.025428 0.022113 0.027620 0.924839 0.019306 0.015210 0.946805 0.018680 0.196142 0.183389 0.365183 0.255286 0.046494 0.744311 0.050598 0.158596 0.416681 0.244015 0.182364 0.156940 0.127991 0.399822 0.202889 0.269298 Consensus sequence: HDGTCGCGTGDCVB Alignment: BBGHCACGCGACDD --VGCACGTGGH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 35 Motif name: GABPA Original motif 0.032356 0.776542 0.190091 0.001011 0.070779 0.924166 0.004044 0.001011 0.000000 0.000000 0.998991 0.001009 0.000000 0.000000 1.000000 0.000000 0.997986 0.001007 0.001007 0.000000 0.995972 0.002014 0.000000 0.002014 0.094758 0.032258 0.872984 0.000000 0.056509 0.263370 0.037336 0.642785 0.155556 0.138384 0.609091 0.096970 0.266667 0.264646 0.419192 0.049495 0.235354 0.360606 0.226263 0.177778 Consensus sequence: CCGGAAGTGVV Reserve complement motif 0.235354 0.226263 0.360606 0.177778 0.266667 0.419192 0.264646 0.049495 0.155556 0.609091 0.138384 0.096970 0.642785 0.263370 0.037336 0.056509 0.094758 0.872984 0.032258 0.000000 0.002014 0.002014 0.000000 0.995972 0.000000 0.001007 0.001007 0.997986 0.000000 1.000000 0.000000 0.000000 0.000000 0.998991 0.000000 0.001009 0.070779 0.004044 0.924166 0.001011 0.032356 0.190091 0.776542 0.001011 Consensus sequence: VVCACTTCCGG ************************************************************************ Best Matches for Motif ID 35 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00013 Gabpa_primary Reverse Complement Reverse Complement Backward 6 11 0.000000 Species: Mus musculus Original motif 0.347579 0.362501 0.122567 0.167353 0.291516 0.289483 0.243331 0.175670 0.444682 0.202283 0.117720 0.235315 0.286823 0.160493 0.154998 0.397686 0.777207 0.031168 0.138668 0.052958 0.020187 0.935458 0.041166 0.003190 0.044954 0.947416 0.006517 0.001112 0.004962 0.002315 0.991007 0.001716 0.002572 0.002766 0.992355 0.002307 0.989037 0.001723 0.001769 0.007471 0.898665 0.004213 0.001115 0.096007 0.219936 0.020606 0.754552 0.004906 0.021686 0.134459 0.014432 0.829423 0.197325 0.176901 0.362465 0.263309 0.245978 0.264865 0.197336 0.291821 0.323340 0.203013 0.195793 0.277854 0.279355 0.250354 0.250472 0.219819 Consensus sequence: HVHHACCGGAAGTDHHV Reverse complement motif 0.219819 0.250354 0.250472 0.279355 0.277854 0.203013 0.195793 0.323340 0.291821 0.264865 0.197336 0.245978 0.197325 0.362465 0.176901 0.263309 0.829423 0.134459 0.014432 0.021686 0.219936 0.754552 0.020606 0.004906 0.096007 0.004213 0.001115 0.898665 0.007471 0.001723 0.001769 0.989037 0.002572 0.992355 0.002766 0.002307 0.004962 0.991007 0.002315 0.001716 0.044954 0.006517 0.947416 0.001112 0.020187 0.041166 0.935458 0.003190 0.052958 0.031168 0.138668 0.777207 0.397686 0.160493 0.154998 0.286823 0.235315 0.202283 0.117720 0.444682 0.175670 0.289483 0.243331 0.291516 0.347579 0.122567 0.362501 0.167353 Consensus sequence: BHHHACTTCCGGTHHBD Alignment: BHHHACTTCCGGTHHBD -VVCACTTCCGG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00410 Elk1 Original Motif Original Motif Backward 2 11 0.000136 Species: Mus musculus Original motif 0.430685 0.247184 0.200279 0.121853 0.170474 0.344859 0.320328 0.164339 0.289040 0.209865 0.151683 0.349412 0.153609 0.191266 0.230615 0.424510 0.717152 0.035619 0.128912 0.118318 0.015844 0.931939 0.044019 0.008198 0.074710 0.923143 0.001579 0.000568 0.005662 0.001876 0.991367 0.001095 0.002915 0.001618 0.993221 0.002246 0.986317 0.000532 0.001970 0.011180 0.891841 0.003746 0.000912 0.103501 0.077493 0.231881 0.682573 0.008053 0.012287 0.247896 0.024535 0.715282 0.291287 0.134464 0.256360 0.317889 0.223530 0.285605 0.253558 0.237306 0.373509 0.307981 0.133817 0.184693 0.294043 0.208400 0.267829 0.229728 Consensus sequence: VVHBACCGGAAGTDBHD Reverse complement motif 0.229728 0.208400 0.267829 0.294043 0.184693 0.307981 0.133817 0.373509 0.223530 0.253558 0.285605 0.237306 0.317889 0.134464 0.256360 0.291287 0.715282 0.247896 0.024535 0.012287 0.077493 0.682573 0.231881 0.008053 0.103501 0.003746 0.000912 0.891841 0.011180 0.000532 0.001970 0.986317 0.002915 0.993221 0.001618 0.002246 0.005662 0.991367 0.001876 0.001095 0.074710 0.001579 0.923143 0.000568 0.015844 0.044019 0.931939 0.008198 0.118318 0.035619 0.128912 0.717152 0.424510 0.191266 0.230615 0.153609 0.349412 0.209865 0.151683 0.289040 0.170474 0.320328 0.344859 0.164339 0.121853 0.247184 0.200279 0.430685 Consensus sequence: DHBDACTTCCGGTVHVB Alignment: VVHBACCGGAAGTDBHD -----CCGGAAGTGVV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00420 Elk3 Original Motif Original Motif Forward 6 11 0.000220 Species: Mus musculus Original motif 0.418636 0.167911 0.195103 0.218350 0.246759 0.378552 0.216618 0.158071 0.170474 0.198507 0.329732 0.301287 0.153827 0.338948 0.166531 0.340694 0.680337 0.052303 0.181512 0.085848 0.019707 0.916463 0.055898 0.007932 0.087081 0.910099 0.002387 0.000433 0.007321 0.001499 0.990022 0.001157 0.002298 0.001866 0.993126 0.002710 0.982141 0.000524 0.001717 0.015617 0.903999 0.006376 0.001427 0.088198 0.079522 0.183730 0.730171 0.006577 0.009983 0.341624 0.056464 0.591929 0.329404 0.110758 0.301227 0.258611 0.263984 0.375830 0.189175 0.171012 0.415962 0.256170 0.174350 0.153518 0.208242 0.316512 0.281982 0.193264 Consensus sequence: DVBBACCGGAAGYDVVV Reverse complement motif 0.208242 0.281982 0.316512 0.193264 0.153518 0.256170 0.174350 0.415962 0.263984 0.189175 0.375830 0.171012 0.258611 0.110758 0.301227 0.329404 0.591929 0.341624 0.056464 0.009983 0.079522 0.730171 0.183730 0.006577 0.088198 0.006376 0.001427 0.903999 0.015617 0.000524 0.001717 0.982141 0.002298 0.993126 0.001866 0.002710 0.007321 0.990022 0.001499 0.001157 0.087081 0.002387 0.910099 0.000433 0.019707 0.055898 0.916463 0.007932 0.085848 0.052303 0.181512 0.680337 0.340694 0.338948 0.166531 0.153827 0.170474 0.329732 0.198507 0.301287 0.246759 0.216618 0.378552 0.158071 0.218350 0.167911 0.195103 0.418636 Consensus sequence: VBVDMCTTCCGGTVBVD Alignment: DVBBACCGGAAGYDVVV -----CCGGAAGTGVV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00421 Etv1 Original Motif Original Motif Backward 2 11 0.000932 Species: Mus musculus Original motif 0.481848 0.274378 0.165047 0.078727 0.153123 0.322109 0.385794 0.138974 0.257711 0.198309 0.118559 0.425422 0.102329 0.255032 0.373097 0.269542 0.655995 0.027594 0.168796 0.147615 0.012836 0.906067 0.077134 0.003962 0.079806 0.917232 0.002438 0.000524 0.005217 0.001765 0.991859 0.001159 0.001691 0.002097 0.993588 0.002624 0.991087 0.001016 0.001937 0.005961 0.751484 0.005147 0.002324 0.241044 0.112494 0.076460 0.805095 0.005951 0.012019 0.198497 0.022413 0.767071 0.482843 0.140306 0.249898 0.126953 0.298792 0.191769 0.286874 0.222565 0.395216 0.302575 0.172247 0.129961 0.364642 0.219734 0.190320 0.225304 Consensus sequence: MVHBACCGGAAGTVDVH Reverse complement motif 0.225304 0.219734 0.190320 0.364642 0.129961 0.302575 0.172247 0.395216 0.222565 0.191769 0.286874 0.298792 0.126953 0.140306 0.249898 0.482843 0.767071 0.198497 0.022413 0.012019 0.112494 0.805095 0.076460 0.005951 0.241044 0.005147 0.002324 0.751484 0.005961 0.001016 0.001937 0.991087 0.001691 0.993588 0.002097 0.002624 0.005217 0.991859 0.001765 0.001159 0.079806 0.002438 0.917232 0.000524 0.012836 0.077134 0.906067 0.003962 0.147615 0.027594 0.168796 0.655995 0.102329 0.373097 0.255032 0.269542 0.425422 0.198309 0.118559 0.257711 0.153123 0.385794 0.322109 0.138974 0.078727 0.274378 0.165047 0.481848 Consensus sequence: HBDBACTTCCGGTBHVY Alignment: MVHBACCGGAAGTVDVH -----CCGGAAGTGVV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00404 Elf2 Reverse Complement Original Motif Forward 2 11 0.005275 Species: Mus musculus Original motif 0.381592 0.198656 0.201326 0.218426 0.091509 0.331644 0.302830 0.274017 0.165404 0.272650 0.352528 0.209418 0.322145 0.255685 0.129399 0.292771 0.853490 0.012857 0.078563 0.055090 0.002655 0.792907 0.026436 0.178002 0.058923 0.001063 0.002976 0.937038 0.014944 0.001369 0.002865 0.980822 0.003786 0.992305 0.002102 0.001807 0.001365 0.988969 0.001554 0.008111 0.001527 0.009592 0.891056 0.097824 0.003671 0.143708 0.836117 0.016503 0.242982 0.061527 0.305342 0.390148 0.426709 0.117673 0.096260 0.359357 0.202520 0.113885 0.262005 0.421589 0.137957 0.359367 0.163919 0.338758 Consensus sequence: DBBHACTTCCGGDWDB Reverse complement motif 0.137957 0.163919 0.359367 0.338758 0.421589 0.113885 0.262005 0.202520 0.359357 0.117673 0.096260 0.426709 0.390148 0.061527 0.305342 0.242982 0.003671 0.836117 0.143708 0.016503 0.001527 0.891056 0.009592 0.097824 0.001365 0.001554 0.988969 0.008111 0.003786 0.002102 0.992305 0.001807 0.980822 0.001369 0.002865 0.014944 0.937038 0.001063 0.002976 0.058923 0.002655 0.026436 0.792907 0.178002 0.055090 0.012857 0.078563 0.853490 0.292771 0.255685 0.129399 0.322145 0.165404 0.352528 0.272650 0.209418 0.091509 0.302830 0.331644 0.274017 0.218426 0.198656 0.201326 0.381592 Consensus sequence: BDWDCCGGAAGTHBBD Alignment: DBBHACTTCCGGDWDB -VVCACTTCCGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 36 Motif name: csGCCCCGCCCCsc Original motif 0.179104 0.492537 0.164179 0.164179 0.223881 0.402985 0.283582 0.089552 0.014925 0.014925 0.895522 0.074627 0.000000 0.895522 0.089552 0.014925 0.000000 0.925373 0.014925 0.059701 0.029851 0.970149 0.000000 0.000000 0.000000 0.970149 0.029851 0.000000 0.044776 0.000000 0.940299 0.014925 0.000000 0.955224 0.014925 0.029851 0.029851 0.955224 0.014925 0.000000 0.029851 0.925373 0.014925 0.029851 0.119403 0.820896 0.014925 0.044776 0.104478 0.328358 0.373134 0.194030 0.179104 0.358209 0.223881 0.238806 Consensus sequence: HVGCCCCGCCCCBB Reserve complement motif 0.179104 0.223881 0.358209 0.238806 0.104478 0.373134 0.328358 0.194030 0.119403 0.014925 0.820896 0.044776 0.029851 0.014925 0.925373 0.029851 0.029851 0.014925 0.955224 0.000000 0.000000 0.014925 0.955224 0.029851 0.044776 0.940299 0.000000 0.014925 0.000000 0.029851 0.970149 0.000000 0.029851 0.000000 0.970149 0.000000 0.000000 0.014925 0.925373 0.059701 0.000000 0.089552 0.895522 0.014925 0.014925 0.895522 0.014925 0.074627 0.223881 0.283582 0.402985 0.089552 0.179104 0.164179 0.492537 0.164179 Consensus sequence: BBGGGGCGGGGCVD ************************************************************************ Best Matches for Motif ID 36 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Original Motif Forward 2 14 0.000000 Species: Mus musculus Original motif 0.204514 0.198353 0.171218 0.425915 0.167188 0.296785 0.246082 0.289946 0.267330 0.148001 0.398674 0.185994 0.549386 0.060167 0.337100 0.053347 0.050746 0.900013 0.022169 0.027073 0.037905 0.920332 0.008360 0.033403 0.410356 0.566702 0.016267 0.006675 0.009526 0.982354 0.001060 0.007060 0.204292 0.001084 0.748567 0.046056 0.003955 0.988490 0.002821 0.004735 0.004264 0.988826 0.004311 0.002598 0.002758 0.929549 0.001244 0.066448 0.260332 0.421683 0.024720 0.293265 0.184798 0.247697 0.085237 0.482268 0.347537 0.197344 0.139961 0.315159 0.255281 0.166620 0.242297 0.335802 Consensus sequence: HBDRCCMCGCCCHHHD Reverse complement motif 0.335802 0.166620 0.242297 0.255281 0.315159 0.197344 0.139961 0.347537 0.482268 0.247697 0.085237 0.184798 0.260332 0.024720 0.421683 0.293265 0.002758 0.001244 0.929549 0.066448 0.004264 0.004311 0.988826 0.002598 0.003955 0.002821 0.988490 0.004735 0.204292 0.748567 0.001084 0.046056 0.009526 0.001060 0.982354 0.007060 0.410356 0.016267 0.566702 0.006675 0.037905 0.008360 0.920332 0.033403 0.050746 0.022169 0.900013 0.027073 0.053347 0.060167 0.337100 0.549386 0.267330 0.398674 0.148001 0.185994 0.167188 0.246082 0.296785 0.289946 0.425915 0.198353 0.171218 0.204514 Consensus sequence: DHHDGGGCGRGGKHBH Alignment: HBDRCCMCGCCCHHHD -HVGCCCCGCCCCBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Original Motif Original Motif Backward 3 14 0.010662 Species: Mus musculus Original motif 0.150668 0.131779 0.245665 0.471887 0.316817 0.287314 0.150829 0.245040 0.256473 0.409066 0.109700 0.224761 0.210646 0.220222 0.345010 0.224122 0.166679 0.508939 0.081676 0.242705 0.049351 0.759380 0.088489 0.102780 0.047598 0.785546 0.121957 0.044898 0.004606 0.944933 0.034696 0.015764 0.040252 0.050652 0.890382 0.018713 0.003038 0.913699 0.022449 0.060814 0.028672 0.941477 0.012276 0.017575 0.635243 0.139731 0.110495 0.114531 0.240016 0.385948 0.182848 0.191188 0.210430 0.274127 0.085171 0.430272 0.088118 0.454598 0.208989 0.248295 0.181269 0.265028 0.149023 0.404680 0.101070 0.252682 0.368542 0.277706 Consensus sequence: DHHBCCCCGCCAHHBHB Reverse complement motif 0.101070 0.368542 0.252682 0.277706 0.404680 0.265028 0.149023 0.181269 0.088118 0.208989 0.454598 0.248295 0.430272 0.274127 0.085171 0.210430 0.240016 0.182848 0.385948 0.191188 0.114531 0.139731 0.110495 0.635243 0.028672 0.012276 0.941477 0.017575 0.003038 0.022449 0.913699 0.060814 0.040252 0.890382 0.050652 0.018713 0.004606 0.034696 0.944933 0.015764 0.047598 0.121957 0.785546 0.044898 0.049351 0.088489 0.759380 0.102780 0.166679 0.081676 0.508939 0.242705 0.210646 0.345010 0.220222 0.224122 0.256473 0.109700 0.409066 0.224761 0.245040 0.287314 0.150829 0.316817 0.471887 0.131779 0.245665 0.150668 Consensus sequence: BHBHDTGGCGGGGBDHD Alignment: DHHBCCCCGCCAHHBHB -HVGCCCCGCCCCBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Original Motif Original Motif Backward 1 14 0.017761 Species: Mus musculus Original motif 0.201535 0.165213 0.201324 0.431929 0.136153 0.443451 0.179132 0.241264 0.263149 0.555137 0.067983 0.113731 0.142183 0.737634 0.045722 0.074461 0.044982 0.884112 0.045356 0.025549 0.246434 0.590578 0.022655 0.140333 0.123049 0.591257 0.033072 0.252622 0.018153 0.944742 0.010254 0.026851 0.035459 0.953844 0.003988 0.006709 0.020000 0.954344 0.005966 0.019690 0.015299 0.964390 0.006755 0.013557 0.028565 0.936152 0.011660 0.023623 0.300127 0.517309 0.029700 0.152863 0.159063 0.513443 0.051834 0.275660 0.158172 0.647055 0.133256 0.061516 Consensus sequence: DBCCCCCCCCCCMYC Reverse complement motif 0.158172 0.133256 0.647055 0.061516 0.159063 0.051834 0.513443 0.275660 0.300127 0.029700 0.517309 0.152863 0.028565 0.011660 0.936152 0.023623 0.015299 0.006755 0.964390 0.013557 0.020000 0.005966 0.954344 0.019690 0.035459 0.003988 0.953844 0.006709 0.018153 0.010254 0.944742 0.026851 0.123049 0.033072 0.591257 0.252622 0.246434 0.022655 0.590578 0.140333 0.044982 0.045356 0.884112 0.025549 0.142183 0.045722 0.737634 0.074461 0.263149 0.067983 0.555137 0.113731 0.136153 0.179132 0.443451 0.241264 0.431929 0.165213 0.201324 0.201535 Consensus sequence: GKRGGGGGGGGGGBD Alignment: DBCCCCCCCCCCMYC -HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Original Motif Original Motif Forward 1 14 0.018191 Species: Mus musculus Original motif 0.136946 0.396508 0.135309 0.331236 0.185528 0.417538 0.215409 0.181525 0.171276 0.341901 0.172832 0.313991 0.145641 0.590572 0.146376 0.117412 0.138035 0.660416 0.114016 0.087533 0.222728 0.750532 0.007528 0.019212 0.024633 0.963314 0.001894 0.010159 0.009557 0.979956 0.000642 0.009844 0.010416 0.977424 0.000541 0.011619 0.026401 0.956740 0.001544 0.015314 0.195502 0.755959 0.011060 0.037480 0.491291 0.364785 0.025613 0.118311 0.305153 0.398160 0.071680 0.225008 0.253497 0.232647 0.213246 0.300610 0.156964 0.297876 0.144683 0.400477 0.179549 0.292514 0.319462 0.208475 Consensus sequence: HVBCCCCCCCCMHHHB Reverse complement motif 0.179549 0.319462 0.292514 0.208475 0.400477 0.297876 0.144683 0.156964 0.300610 0.232647 0.213246 0.253497 0.305153 0.071680 0.398160 0.225008 0.118311 0.364785 0.025613 0.491291 0.195502 0.011060 0.755959 0.037480 0.026401 0.001544 0.956740 0.015314 0.010416 0.000541 0.977424 0.011619 0.009557 0.000642 0.979956 0.009844 0.024633 0.001894 0.963314 0.010159 0.222728 0.007528 0.750532 0.019212 0.138035 0.114016 0.660416 0.087533 0.145641 0.146376 0.590572 0.117412 0.171276 0.172832 0.341901 0.313991 0.185528 0.215409 0.417538 0.181525 0.136946 0.135309 0.396508 0.331236 Consensus sequence: BHHDYGGGGGGGGBVD Alignment: HVBCCCCCCCCMHHHB HVGCCCCGCCCCBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondary Original Motif Original Motif Forward 1 14 0.022579 Species: Mus musculus Original motif 0.162979 0.284781 0.237433 0.314807 0.182449 0.447584 0.069464 0.300502 0.298973 0.261014 0.213211 0.226802 0.136039 0.433062 0.144274 0.286625 0.180084 0.395933 0.158565 0.265418 0.069354 0.748510 0.068898 0.113238 0.060485 0.717828 0.075333 0.146354 0.023280 0.071762 0.645500 0.259457 0.166896 0.749762 0.062730 0.020612 0.050401 0.775248 0.089072 0.085279 0.103847 0.767557 0.068804 0.059791 0.064815 0.748318 0.114588 0.072280 0.340921 0.071942 0.242981 0.344157 0.301967 0.263512 0.165927 0.268594 0.479800 0.222955 0.118441 0.178803 0.229469 0.283621 0.143099 0.343811 0.261733 0.180191 0.169905 0.388170 Consensus sequence: BHHBHCCGCCCCDHHHH Reverse complement motif 0.388170 0.180191 0.169905 0.261733 0.343811 0.283621 0.143099 0.229469 0.178803 0.222955 0.118441 0.479800 0.268594 0.263512 0.165927 0.301967 0.344157 0.071942 0.242981 0.340921 0.064815 0.114588 0.748318 0.072280 0.103847 0.068804 0.767557 0.059791 0.050401 0.089072 0.775248 0.085279 0.166896 0.062730 0.749762 0.020612 0.023280 0.645500 0.071762 0.259457 0.060485 0.075333 0.717828 0.146354 0.069354 0.068898 0.748510 0.113238 0.180084 0.158565 0.395933 0.265418 0.136039 0.144274 0.433062 0.286625 0.226802 0.261014 0.213211 0.298973 0.182449 0.069464 0.447584 0.300502 0.314807 0.284781 0.237433 0.162979 Consensus sequence: HHHHDGGGGCGGDBHDV Alignment: BHHBHCCGCCCCDHHHH HVGCCCCGCCCCBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 37 Motif name: tkAAATAATAtw Original motif 0.233333 0.200000 0.166667 0.400000 0.233333 0.133333 0.266667 0.366667 0.733333 0.033333 0.033333 0.200000 0.866667 0.033333 0.033333 0.066667 0.833333 0.000000 0.033333 0.133333 0.166667 0.000000 0.000000 0.833333 0.866667 0.066667 0.000000 0.066667 0.800000 0.033333 0.033333 0.133333 0.000000 0.000000 0.000000 1.000000 0.966667 0.033333 0.000000 0.000000 0.166667 0.200000 0.133333 0.500000 0.400000 0.100000 0.100000 0.400000 Consensus sequence: HDAAATAATAHW Reserve complement motif 0.400000 0.100000 0.100000 0.400000 0.500000 0.200000 0.133333 0.166667 0.000000 0.033333 0.000000 0.966667 1.000000 0.000000 0.000000 0.000000 0.133333 0.033333 0.033333 0.800000 0.066667 0.066667 0.000000 0.866667 0.833333 0.000000 0.000000 0.166667 0.133333 0.000000 0.033333 0.833333 0.066667 0.033333 0.033333 0.866667 0.200000 0.033333 0.033333 0.733333 0.366667 0.133333 0.266667 0.233333 0.400000 0.200000 0.166667 0.233333 Consensus sequence: WHTATTATTTDH ************************************************************************ Best Matches for Motif ID 37 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00121 Hoxd10 Reverse Complement Reverse Complement Backward 3 12 0.003532 Species: Mus musculus Original motif 0.405345 0.293266 0.220907 0.080482 0.398063 0.099034 0.333525 0.169378 0.049753 0.190411 0.336789 0.423048 0.243698 0.226261 0.324346 0.205696 0.030873 0.549741 0.008321 0.411065 0.714225 0.228092 0.020960 0.036723 0.833992 0.010944 0.021918 0.133146 0.008898 0.026169 0.008341 0.956591 0.811684 0.004889 0.004751 0.178676 0.952107 0.004322 0.004587 0.038984 0.925365 0.008360 0.006811 0.059464 0.850659 0.058250 0.065237 0.025855 0.193369 0.242985 0.049515 0.514131 0.266774 0.080601 0.239781 0.412844 0.335522 0.125500 0.188170 0.350809 0.407171 0.120540 0.187300 0.284989 0.281181 0.242348 0.160247 0.316224 Consensus sequence: VDKVYAATAAAATDDDH Reverse complement motif 0.316224 0.242348 0.160247 0.281181 0.284989 0.120540 0.187300 0.407171 0.350809 0.125500 0.188170 0.335522 0.412844 0.080601 0.239781 0.266774 0.514131 0.242985 0.049515 0.193369 0.025855 0.058250 0.065237 0.850659 0.059464 0.008360 0.006811 0.925365 0.038984 0.004322 0.004587 0.952107 0.178676 0.004889 0.004751 0.811684 0.956591 0.026169 0.008341 0.008898 0.133146 0.010944 0.021918 0.833992 0.036723 0.228092 0.020960 0.714225 0.030873 0.008321 0.549741 0.411065 0.243698 0.324346 0.226261 0.205696 0.423048 0.190411 0.336789 0.049753 0.169378 0.099034 0.333525 0.398063 0.080482 0.293266 0.220907 0.405345 Consensus sequence: HDDDATTTTATTKVRDB Alignment: HDDDATTTTATTKVRDB ---WHTATTATTTDH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00244 Tlx2 Reverse Complement Reverse Complement Forward 3 12 0.006460 Species: Mus musculus Original motif 0.105929 0.200768 0.276304 0.416999 0.605737 0.082484 0.045449 0.266331 0.616140 0.070870 0.219578 0.093411 0.207168 0.101768 0.138909 0.552155 0.205588 0.314073 0.063564 0.416776 0.753104 0.060249 0.064598 0.122049 0.785626 0.028841 0.041793 0.143739 0.035001 0.038504 0.018619 0.907876 0.039875 0.038526 0.009504 0.912095 0.920557 0.010057 0.045031 0.024356 0.806507 0.031077 0.030857 0.131559 0.170184 0.056552 0.043413 0.729851 0.630114 0.051409 0.080078 0.238398 0.554265 0.093528 0.223411 0.128796 0.183854 0.390999 0.093847 0.331300 0.289988 0.101149 0.103803 0.505061 0.400594 0.061089 0.136478 0.401839 Consensus sequence: BAATHAATTAATAAHWW Reverse complement motif 0.401839 0.061089 0.136478 0.400594 0.505061 0.101149 0.103803 0.289988 0.183854 0.093847 0.390999 0.331300 0.128796 0.093528 0.223411 0.554265 0.238398 0.051409 0.080078 0.630114 0.729851 0.056552 0.043413 0.170184 0.131559 0.031077 0.030857 0.806507 0.024356 0.010057 0.045031 0.920557 0.912095 0.038526 0.009504 0.039875 0.907876 0.038504 0.018619 0.035001 0.143739 0.028841 0.041793 0.785626 0.122049 0.060249 0.064598 0.753104 0.416776 0.314073 0.063564 0.205588 0.552155 0.101768 0.138909 0.207168 0.093411 0.070870 0.219578 0.616140 0.266331 0.082484 0.045449 0.605737 0.416999 0.200768 0.276304 0.105929 Consensus sequence: WWDTTATTAATTHATTV Alignment: WWDTTATTAATTHATTV --WHTATTATTTDH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00051 Sox8_primary Original Motif Reverse Complement Backward 4 12 0.012067 Species: Mus musculus Original motif 0.244952 0.197659 0.278014 0.279374 0.244434 0.136006 0.278446 0.341114 0.512025 0.129954 0.139069 0.218951 0.190001 0.086232 0.125500 0.598267 0.154692 0.325860 0.193904 0.325544 0.384624 0.130540 0.035110 0.449726 0.945021 0.006713 0.011975 0.036291 0.008386 0.026630 0.004166 0.960817 0.020908 0.005554 0.009294 0.964244 0.149285 0.038995 0.806085 0.005635 0.110990 0.007155 0.007797 0.874058 0.087283 0.099671 0.059611 0.753435 0.250662 0.432576 0.082152 0.234610 0.251277 0.174578 0.147771 0.426374 0.205121 0.137656 0.296366 0.360857 0.316796 0.152457 0.164403 0.366344 0.475864 0.128717 0.153551 0.241867 Consensus sequence: DDATBWATTGTTHHDDD Reverse complement motif 0.241867 0.128717 0.153551 0.475864 0.366344 0.152457 0.164403 0.316796 0.360857 0.137656 0.296366 0.205121 0.426374 0.174578 0.147771 0.251277 0.250662 0.082152 0.432576 0.234610 0.753435 0.099671 0.059611 0.087283 0.874058 0.007155 0.007797 0.110990 0.149285 0.806085 0.038995 0.005635 0.964244 0.005554 0.009294 0.020908 0.960817 0.026630 0.004166 0.008386 0.036291 0.006713 0.011975 0.945021 0.449726 0.130540 0.035110 0.384624 0.154692 0.193904 0.325860 0.325544 0.598267 0.086232 0.125500 0.190001 0.218951 0.129954 0.139069 0.512025 0.341114 0.136006 0.278446 0.244434 0.279374 0.197659 0.278014 0.244952 Consensus sequence: DDDHDAACAATWBATDD Alignment: DDDHDAACAATWBATDD --HDAAATAATAHW--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00180 Hoxd13 Reverse Complement Reverse Complement Backward 3 12 0.012377 Species: Mus musculus Original motif 0.279189 0.316791 0.190404 0.213616 0.297705 0.175638 0.191020 0.335637 0.333485 0.203858 0.174034 0.288623 0.046444 0.540349 0.083237 0.329969 0.016780 0.648667 0.003870 0.330682 0.679959 0.116873 0.002745 0.200422 0.936496 0.002013 0.026876 0.034615 0.004741 0.008734 0.003861 0.982665 0.904624 0.000869 0.005345 0.089162 0.967883 0.002295 0.001003 0.028819 0.980087 0.004768 0.002887 0.012258 0.898523 0.041633 0.022776 0.037069 0.246903 0.292446 0.069240 0.391411 0.192528 0.300908 0.105655 0.400908 0.247610 0.343317 0.190760 0.218313 0.246702 0.253595 0.176298 0.323404 Consensus sequence: HDHYYAATAAAAHHHH Reverse complement motif 0.323404 0.253595 0.176298 0.246702 0.247610 0.190760 0.343317 0.218313 0.400908 0.300908 0.105655 0.192528 0.391411 0.292446 0.069240 0.246903 0.037069 0.041633 0.022776 0.898523 0.012258 0.004768 0.002887 0.980087 0.028819 0.002295 0.001003 0.967883 0.089162 0.000869 0.005345 0.904624 0.982665 0.008734 0.003861 0.004741 0.034615 0.002013 0.026876 0.936496 0.200422 0.116873 0.002745 0.679959 0.016780 0.003870 0.648667 0.330682 0.046444 0.083237 0.540349 0.329969 0.288623 0.203858 0.174034 0.333485 0.335637 0.175638 0.191020 0.297705 0.279189 0.190404 0.316791 0.213616 Consensus sequence: HDHHTTTTATTKKHDD Alignment: HDHHTTTTATTKKHDD --WHTATTATTTDH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00037 Zfp105_primary Reverse Complement Reverse Complement Forward 3 12 0.012956 Species: Mus musculus Original motif 0.363104 0.182807 0.145232 0.308856 0.419707 0.133742 0.222546 0.224005 0.164481 0.418263 0.052397 0.364858 0.715575 0.117639 0.064914 0.101872 0.883836 0.026985 0.032584 0.056596 0.558797 0.151280 0.033120 0.256803 0.267037 0.403488 0.026746 0.302729 0.939762 0.013627 0.034579 0.012032 0.897072 0.009878 0.035642 0.057408 0.305904 0.516040 0.055311 0.122746 0.880940 0.027958 0.048350 0.042752 0.710082 0.052464 0.040250 0.197204 0.246712 0.125155 0.318627 0.309506 0.429749 0.181755 0.176892 0.211603 0.339643 0.097216 0.355250 0.207891 Consensus sequence: HDYAAAHAAMAADHD Reverse complement motif 0.339643 0.355250 0.097216 0.207891 0.211603 0.181755 0.176892 0.429749 0.246712 0.318627 0.125155 0.309506 0.197204 0.052464 0.040250 0.710082 0.042752 0.027958 0.048350 0.880940 0.305904 0.055311 0.516040 0.122746 0.057408 0.009878 0.035642 0.897072 0.012032 0.013627 0.034579 0.939762 0.267037 0.026746 0.403488 0.302729 0.256803 0.151280 0.033120 0.558797 0.056596 0.026985 0.032584 0.883836 0.101872 0.117639 0.064914 0.715575 0.164481 0.052397 0.418263 0.364858 0.224005 0.133742 0.222546 0.419707 0.308856 0.182807 0.145232 0.363104 Consensus sequence: HHHTTRTTDTTTKDH Alignment: HHHTTRTTDTTTKDH --WHTATTATTTDH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 38 Motif name: cccGCCCCGCCCCsb Original motif 0.148936 0.425532 0.234043 0.191489 0.106383 0.553191 0.170213 0.170213 0.106383 0.659574 0.148936 0.085106 0.042553 0.000000 0.851064 0.106383 0.000000 0.936170 0.063830 0.000000 0.000000 0.872340 0.042553 0.085106 0.000000 1.000000 0.000000 0.000000 0.000000 0.957447 0.042553 0.000000 0.021277 0.021277 0.957447 0.000000 0.000000 0.957447 0.021277 0.021277 0.042553 0.936170 0.021277 0.000000 0.021277 0.957447 0.021277 0.000000 0.063830 0.914894 0.021277 0.000000 0.063830 0.297872 0.404255 0.234043 0.148936 0.319149 0.255319 0.276596 Consensus sequence: BCCGCCCCGCCCCBB Reserve complement motif 0.148936 0.255319 0.319149 0.276596 0.063830 0.404255 0.297872 0.234043 0.063830 0.021277 0.914894 0.000000 0.021277 0.021277 0.957447 0.000000 0.042553 0.021277 0.936170 0.000000 0.000000 0.021277 0.957447 0.021277 0.021277 0.957447 0.021277 0.000000 0.000000 0.042553 0.957447 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.042553 0.872340 0.085106 0.000000 0.063830 0.936170 0.000000 0.042553 0.851064 0.000000 0.106383 0.106383 0.148936 0.659574 0.085106 0.106383 0.170213 0.553191 0.170213 0.148936 0.234043 0.425532 0.191489 Consensus sequence: BBGGGGCGGGGCGGB ************************************************************************ Best Matches for Motif ID 38 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Original Motif Backward 2 15 0.004818 Species: Mus musculus Original motif 0.204514 0.198353 0.171218 0.425915 0.167188 0.296785 0.246082 0.289946 0.267330 0.148001 0.398674 0.185994 0.549386 0.060167 0.337100 0.053347 0.050746 0.900013 0.022169 0.027073 0.037905 0.920332 0.008360 0.033403 0.410356 0.566702 0.016267 0.006675 0.009526 0.982354 0.001060 0.007060 0.204292 0.001084 0.748567 0.046056 0.003955 0.988490 0.002821 0.004735 0.004264 0.988826 0.004311 0.002598 0.002758 0.929549 0.001244 0.066448 0.260332 0.421683 0.024720 0.293265 0.184798 0.247697 0.085237 0.482268 0.347537 0.197344 0.139961 0.315159 0.255281 0.166620 0.242297 0.335802 Consensus sequence: HBDRCCMCGCCCHHHD Reverse complement motif 0.335802 0.166620 0.242297 0.255281 0.315159 0.197344 0.139961 0.347537 0.482268 0.247697 0.085237 0.184798 0.260332 0.024720 0.421683 0.293265 0.002758 0.001244 0.929549 0.066448 0.004264 0.004311 0.988826 0.002598 0.003955 0.002821 0.988490 0.004735 0.204292 0.748567 0.001084 0.046056 0.009526 0.001060 0.982354 0.007060 0.410356 0.016267 0.566702 0.006675 0.037905 0.008360 0.920332 0.033403 0.050746 0.022169 0.900013 0.027073 0.053347 0.060167 0.337100 0.549386 0.267330 0.398674 0.148001 0.185994 0.167188 0.246082 0.296785 0.289946 0.425915 0.198353 0.171218 0.204514 Consensus sequence: DHHDGGGCGRGGKHBH Alignment: HBDRCCMCGCCCHHHD BCCGCCCCGCCCCBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Original Motif Original Motif Forward 1 15 0.010812 Species: Mus musculus Original motif 0.150668 0.131779 0.245665 0.471887 0.316817 0.287314 0.150829 0.245040 0.256473 0.409066 0.109700 0.224761 0.210646 0.220222 0.345010 0.224122 0.166679 0.508939 0.081676 0.242705 0.049351 0.759380 0.088489 0.102780 0.047598 0.785546 0.121957 0.044898 0.004606 0.944933 0.034696 0.015764 0.040252 0.050652 0.890382 0.018713 0.003038 0.913699 0.022449 0.060814 0.028672 0.941477 0.012276 0.017575 0.635243 0.139731 0.110495 0.114531 0.240016 0.385948 0.182848 0.191188 0.210430 0.274127 0.085171 0.430272 0.088118 0.454598 0.208989 0.248295 0.181269 0.265028 0.149023 0.404680 0.101070 0.252682 0.368542 0.277706 Consensus sequence: DHHBCCCCGCCAHHBHB Reverse complement motif 0.101070 0.368542 0.252682 0.277706 0.404680 0.265028 0.149023 0.181269 0.088118 0.208989 0.454598 0.248295 0.430272 0.274127 0.085171 0.210430 0.240016 0.182848 0.385948 0.191188 0.114531 0.139731 0.110495 0.635243 0.028672 0.012276 0.941477 0.017575 0.003038 0.022449 0.913699 0.060814 0.040252 0.890382 0.050652 0.018713 0.004606 0.034696 0.944933 0.015764 0.047598 0.121957 0.785546 0.044898 0.049351 0.088489 0.759380 0.102780 0.166679 0.081676 0.508939 0.242705 0.210646 0.345010 0.220222 0.224122 0.256473 0.109700 0.409066 0.224761 0.245040 0.287314 0.150829 0.316817 0.471887 0.131779 0.245665 0.150668 Consensus sequence: BHBHDTGGCGGGGBDHD Alignment: DHHBCCCCGCCAHHBHB BCCGCCCCGCCCCBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Reverse Complement Reverse Complement Backward 1 15 0.015415 Species: Mus musculus Original motif 0.201535 0.165213 0.201324 0.431929 0.136153 0.443451 0.179132 0.241264 0.263149 0.555137 0.067983 0.113731 0.142183 0.737634 0.045722 0.074461 0.044982 0.884112 0.045356 0.025549 0.246434 0.590578 0.022655 0.140333 0.123049 0.591257 0.033072 0.252622 0.018153 0.944742 0.010254 0.026851 0.035459 0.953844 0.003988 0.006709 0.020000 0.954344 0.005966 0.019690 0.015299 0.964390 0.006755 0.013557 0.028565 0.936152 0.011660 0.023623 0.300127 0.517309 0.029700 0.152863 0.159063 0.513443 0.051834 0.275660 0.158172 0.647055 0.133256 0.061516 Consensus sequence: DBCCCCCCCCCCMYC Reverse complement motif 0.158172 0.133256 0.647055 0.061516 0.159063 0.051834 0.513443 0.275660 0.300127 0.029700 0.517309 0.152863 0.028565 0.011660 0.936152 0.023623 0.015299 0.006755 0.964390 0.013557 0.020000 0.005966 0.954344 0.019690 0.035459 0.003988 0.953844 0.006709 0.018153 0.010254 0.944742 0.026851 0.123049 0.033072 0.591257 0.252622 0.246434 0.022655 0.590578 0.140333 0.044982 0.045356 0.884112 0.025549 0.142183 0.045722 0.737634 0.074461 0.263149 0.067983 0.555137 0.113731 0.136153 0.179132 0.443451 0.241264 0.431929 0.165213 0.201324 0.201535 Consensus sequence: GKRGGGGGGGGGGBD Alignment: GKRGGGGGGGGGGBD BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Original Motif Original Motif Forward 1 15 0.018287 Species: Mus musculus Original motif 0.136946 0.396508 0.135309 0.331236 0.185528 0.417538 0.215409 0.181525 0.171276 0.341901 0.172832 0.313991 0.145641 0.590572 0.146376 0.117412 0.138035 0.660416 0.114016 0.087533 0.222728 0.750532 0.007528 0.019212 0.024633 0.963314 0.001894 0.010159 0.009557 0.979956 0.000642 0.009844 0.010416 0.977424 0.000541 0.011619 0.026401 0.956740 0.001544 0.015314 0.195502 0.755959 0.011060 0.037480 0.491291 0.364785 0.025613 0.118311 0.305153 0.398160 0.071680 0.225008 0.253497 0.232647 0.213246 0.300610 0.156964 0.297876 0.144683 0.400477 0.179549 0.292514 0.319462 0.208475 Consensus sequence: HVBCCCCCCCCMHHHB Reverse complement motif 0.179549 0.319462 0.292514 0.208475 0.400477 0.297876 0.144683 0.156964 0.300610 0.232647 0.213246 0.253497 0.305153 0.071680 0.398160 0.225008 0.118311 0.364785 0.025613 0.491291 0.195502 0.011060 0.755959 0.037480 0.026401 0.001544 0.956740 0.015314 0.010416 0.000541 0.977424 0.011619 0.009557 0.000642 0.979956 0.009844 0.024633 0.001894 0.963314 0.010159 0.222728 0.007528 0.750532 0.019212 0.138035 0.114016 0.660416 0.087533 0.145641 0.146376 0.590572 0.117412 0.171276 0.172832 0.341901 0.313991 0.185528 0.215409 0.417538 0.181525 0.136946 0.135309 0.396508 0.331236 Consensus sequence: BHHDYGGGGGGGGBVD Alignment: HVBCCCCCCCCMHHHB BCCGCCCCGCCCCBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_secondary Reverse Complement Original Motif Forward 1 15 0.024745 Species: Mus musculus Original motif 0.146334 0.312326 0.244281 0.297060 0.493155 0.092609 0.162506 0.251729 0.503593 0.059863 0.077561 0.358984 0.763321 0.015264 0.213114 0.008301 0.012415 0.025932 0.945502 0.016151 0.006713 0.015221 0.950098 0.027968 0.062415 0.834303 0.054500 0.048782 0.011010 0.020677 0.928821 0.039493 0.012785 0.024162 0.145822 0.817231 0.133595 0.033962 0.787876 0.044567 0.140697 0.180481 0.428253 0.250570 0.036281 0.806412 0.033510 0.123797 0.157910 0.408607 0.122427 0.311055 0.292185 0.260017 0.197515 0.250283 0.251107 0.124480 0.359447 0.264967 Consensus sequence: BDWAGGCGTGBCHHD Reverse complement motif 0.251107 0.359447 0.124480 0.264967 0.250283 0.260017 0.197515 0.292185 0.157910 0.122427 0.408607 0.311055 0.036281 0.033510 0.806412 0.123797 0.140697 0.428253 0.180481 0.250570 0.133595 0.787876 0.033962 0.044567 0.817231 0.024162 0.145822 0.012785 0.011010 0.928821 0.020677 0.039493 0.062415 0.054500 0.834303 0.048782 0.006713 0.950098 0.015221 0.027968 0.012415 0.945502 0.025932 0.016151 0.008301 0.015264 0.213114 0.763321 0.358984 0.059863 0.077561 0.503593 0.251729 0.092609 0.162506 0.493155 0.146334 0.244281 0.312326 0.297060 Consensus sequence: HHDGBCACGCCTWDB Alignment: HHDGBCACGCCTWDB BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 39 Motif name: kCAGCCAATmr Original motif 0.235294 0.176471 0.294118 0.294118 0.117647 0.705882 0.176471 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.352941 0.352941 0.235294 0.058824 0.352941 0.176471 0.411765 0.058824 Consensus sequence: DCAGCCAATVR Reserve complement motif 0.352941 0.411765 0.176471 0.058824 0.058824 0.352941 0.235294 0.352941 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.117647 0.176471 0.705882 0.000000 0.235294 0.294118 0.176471 0.294118 Consensus sequence: MBATTGGCTGH ************************************************************************ Best Matches for Motif ID 39 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_primary Original Motif Reverse Complement Backward 3 11 0.000709 Species: Mus musculus Original motif 0.302837 0.133017 0.249940 0.314205 0.378542 0.186425 0.250700 0.184332 0.184780 0.144329 0.262766 0.408125 0.308569 0.039689 0.235695 0.416047 0.817738 0.108938 0.033419 0.039905 0.018996 0.007718 0.013175 0.960112 0.009278 0.002422 0.973921 0.014379 0.005587 0.002693 0.985088 0.006633 0.005874 0.004232 0.976927 0.012967 0.951309 0.011835 0.023187 0.013669 0.005927 0.004521 0.005701 0.983851 0.146443 0.003009 0.840720 0.009829 0.002553 0.044504 0.542059 0.410884 0.406299 0.375782 0.133922 0.083997 0.256884 0.160184 0.271190 0.311742 0.388381 0.141811 0.214600 0.255208 0.340877 0.274387 0.205585 0.179151 Consensus sequence: DVDDATGGGATGKMDDV Reverse complement motif 0.179151 0.274387 0.205585 0.340877 0.255208 0.141811 0.214600 0.388381 0.311742 0.160184 0.271190 0.256884 0.083997 0.375782 0.133922 0.406299 0.002553 0.542059 0.044504 0.410884 0.146443 0.840720 0.003009 0.009829 0.983851 0.004521 0.005701 0.005927 0.013669 0.011835 0.023187 0.951309 0.005874 0.976927 0.004232 0.012967 0.005587 0.985088 0.002693 0.006633 0.009278 0.973921 0.002422 0.014379 0.960112 0.007718 0.013175 0.018996 0.039905 0.108938 0.033419 0.817738 0.416047 0.039689 0.235695 0.308569 0.408125 0.144329 0.262766 0.184780 0.184332 0.186425 0.250700 0.378542 0.314205 0.133017 0.249940 0.302837 Consensus sequence: BDDYYCATCCCATDDBD Alignment: BDDYYCATCCCATDDBD ----DCAGCCAATVR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00004 Sox14_secondary Original Motif Original Motif Backward 4 11 0.006587 Species: Mus musculus Original motif 0.191264 0.345487 0.212142 0.251106 0.105033 0.130838 0.338939 0.425191 0.126539 0.333031 0.233364 0.307066 0.641901 0.114039 0.195933 0.048127 0.153349 0.532437 0.272427 0.041786 0.934680 0.009395 0.019668 0.036257 0.013611 0.927298 0.037729 0.021361 0.964293 0.018416 0.006724 0.010568 0.962181 0.018004 0.014592 0.005223 0.229593 0.016301 0.007632 0.746474 0.268456 0.030092 0.519349 0.182102 0.201484 0.107350 0.588833 0.102334 0.253726 0.259057 0.242924 0.244293 0.168663 0.203061 0.347898 0.280378 0.175853 0.339716 0.301724 0.182707 Consensus sequence: BKBASACAATRGHBB Reverse complement motif 0.175853 0.301724 0.339716 0.182707 0.168663 0.347898 0.203061 0.280378 0.253726 0.242924 0.259057 0.244293 0.201484 0.588833 0.107350 0.102334 0.268456 0.519349 0.030092 0.182102 0.746474 0.016301 0.007632 0.229593 0.005223 0.018004 0.014592 0.962181 0.010568 0.018416 0.006724 0.964293 0.013611 0.037729 0.927298 0.021361 0.036257 0.009395 0.019668 0.934680 0.153349 0.272427 0.532437 0.041786 0.048127 0.114039 0.195933 0.641901 0.126539 0.233364 0.333031 0.307066 0.425191 0.130838 0.338939 0.105033 0.191264 0.212142 0.345487 0.251106 Consensus sequence: BBDCMATTGTSTBRB Alignment: BKBASACAATRGHBB -DCAGCCAATVR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00249 Nkx2-5 Reverse Complement Reverse Complement Backward 1 11 0.008057 Species: Mus musculus Original motif 0.284346 0.280937 0.138180 0.296538 0.399663 0.110464 0.327481 0.162392 0.637560 0.029806 0.218321 0.114314 0.184898 0.144379 0.370828 0.299895 0.017459 0.862111 0.118223 0.002207 0.001004 0.958164 0.000888 0.039945 0.947796 0.011499 0.000413 0.040291 0.024268 0.973476 0.000709 0.001546 0.002616 0.001901 0.003337 0.992147 0.006742 0.071290 0.000276 0.921691 0.393078 0.093424 0.490620 0.022879 0.870162 0.007294 0.051952 0.070591 0.632449 0.156278 0.172644 0.038628 0.362798 0.126579 0.085796 0.424828 0.132810 0.206405 0.025084 0.635702 0.094708 0.272324 0.087702 0.545267 Consensus sequence: HDADCCACTTRAAWTT Reverse complement motif 0.545267 0.272324 0.087702 0.094708 0.635702 0.206405 0.025084 0.132810 0.424828 0.126579 0.085796 0.362798 0.038628 0.156278 0.172644 0.632449 0.070591 0.007294 0.051952 0.870162 0.393078 0.490620 0.093424 0.022879 0.921691 0.071290 0.000276 0.006742 0.992147 0.001901 0.003337 0.002616 0.024268 0.000709 0.973476 0.001546 0.040291 0.011499 0.000413 0.947796 0.001004 0.000888 0.958164 0.039945 0.017459 0.118223 0.862111 0.002207 0.184898 0.370828 0.144379 0.299895 0.114314 0.029806 0.218321 0.637560 0.162392 0.110464 0.327481 0.399663 0.296538 0.280937 0.138180 0.284346 Consensus sequence: AAWTTMAAGTGGHTDH Alignment: AAWTTMAAGTGGHTDH -----MBATTGGCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00147 Nkx2-6 Original Motif Original Motif Backward 6 11 0.012827 Species: Mus musculus Original motif 0.217416 0.196318 0.223786 0.362479 0.398508 0.155537 0.270546 0.175410 0.791392 0.022106 0.126944 0.059558 0.211671 0.145452 0.349401 0.293476 0.023830 0.847357 0.127125 0.001688 0.001426 0.942475 0.000495 0.055604 0.969354 0.001012 0.000987 0.028646 0.017358 0.980969 0.000778 0.000894 0.001816 0.004181 0.001573 0.992430 0.000925 0.059099 0.000431 0.939544 0.670672 0.011130 0.312570 0.005628 0.757147 0.010903 0.032137 0.199813 0.335600 0.359053 0.277277 0.028070 0.440449 0.199116 0.111993 0.248442 0.126577 0.210049 0.039661 0.623714 0.088481 0.233166 0.032706 0.645647 Consensus sequence: DDADCCACTTAAVHTT Reverse complement motif 0.645647 0.233166 0.032706 0.088481 0.623714 0.210049 0.039661 0.126577 0.248442 0.199116 0.111993 0.440449 0.335600 0.277277 0.359053 0.028070 0.199813 0.010903 0.032137 0.757147 0.005628 0.011130 0.312570 0.670672 0.939544 0.059099 0.000431 0.000925 0.992430 0.004181 0.001573 0.001816 0.017358 0.000778 0.980969 0.000894 0.028646 0.001012 0.000987 0.969354 0.001426 0.000495 0.942475 0.055604 0.023830 0.127125 0.847357 0.001688 0.211671 0.349401 0.145452 0.293476 0.059558 0.022106 0.126944 0.791392 0.175410 0.155537 0.270546 0.398508 0.362479 0.196318 0.223786 0.217416 Consensus sequence: AAHVTTAAGTGGHTDD Alignment: DDADCCACTTAAVHTT DCAGCCAATVR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00165 Titf1 Reverse Complement Reverse Complement Backward 1 11 0.013173 Species: Mus musculus Original motif 0.142834 0.324493 0.147276 0.385397 0.404842 0.233186 0.227659 0.134313 0.677580 0.044952 0.178774 0.098695 0.137761 0.202622 0.469728 0.189889 0.069301 0.825888 0.093549 0.011262 0.003882 0.876858 0.000966 0.118295 0.904355 0.015154 0.001043 0.079449 0.018912 0.977464 0.001207 0.002417 0.003517 0.004393 0.002428 0.989662 0.007151 0.162279 0.000584 0.829986 0.192074 0.120883 0.670840 0.016203 0.881358 0.002039 0.013253 0.103349 0.450016 0.333144 0.184121 0.032719 0.342018 0.321148 0.066945 0.269889 0.209486 0.122118 0.046367 0.622029 0.174564 0.145894 0.048004 0.631539 Consensus sequence: BVABCCACTTGAMHTT Reverse complement motif 0.631539 0.145894 0.048004 0.174564 0.622029 0.122118 0.046367 0.209486 0.269889 0.321148 0.066945 0.342018 0.032719 0.333144 0.184121 0.450016 0.103349 0.002039 0.013253 0.881358 0.192074 0.670840 0.120883 0.016203 0.829986 0.162279 0.000584 0.007151 0.989662 0.004393 0.002428 0.003517 0.018912 0.001207 0.977464 0.002417 0.079449 0.015154 0.001043 0.904355 0.003882 0.000966 0.876858 0.118295 0.069301 0.093549 0.825888 0.011262 0.137761 0.469728 0.202622 0.189889 0.098695 0.044952 0.178774 0.677580 0.134313 0.233186 0.227659 0.404842 0.385397 0.324493 0.147276 0.142834 Consensus sequence: AAHYTCAAGTGGBTBV Alignment: AAHYTCAAGTGGBTBV -----MBATTGGCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 40 Motif name: kcACCTGCAgc Original motif 0.153846 0.230769 0.307692 0.307692 0.153846 0.538462 0.153846 0.153846 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.153846 0.230769 0.461538 0.153846 0.153846 0.615385 0.153846 0.076923 Consensus sequence: BCACCTGCABC Reserve complement motif 0.153846 0.153846 0.615385 0.076923 0.153846 0.461538 0.230769 0.153846 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.153846 0.153846 0.538462 0.153846 0.153846 0.307692 0.230769 0.307692 Consensus sequence: GBTGCAGGTGB ************************************************************************ Best Matches for Motif ID 40 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00070 Gcm1_primary Reverse Complement Reverse Complement Forward 4 11 0.000000 Species: Mus musculus Original motif 0.251681 0.208273 0.178525 0.361520 0.323865 0.334303 0.205542 0.136289 0.308084 0.277004 0.326203 0.088709 0.280609 0.171416 0.168918 0.379057 0.734441 0.031257 0.211473 0.022829 0.006187 0.990281 0.001052 0.002480 0.005819 0.990856 0.001498 0.001826 0.043838 0.936502 0.001550 0.018110 0.022607 0.058037 0.901005 0.018350 0.000424 0.787011 0.026547 0.186017 0.980774 0.002884 0.011288 0.005054 0.009100 0.110310 0.067399 0.813192 0.247510 0.310539 0.250093 0.191858 0.279511 0.211998 0.250717 0.257774 0.264451 0.270002 0.142606 0.322941 0.227607 0.212076 0.267214 0.293102 Consensus sequence: HVVHACCCGCATVDHD Reverse complement motif 0.293102 0.212076 0.267214 0.227607 0.322941 0.270002 0.142606 0.264451 0.257774 0.211998 0.250717 0.279511 0.247510 0.250093 0.310539 0.191858 0.813192 0.110310 0.067399 0.009100 0.005054 0.002884 0.011288 0.980774 0.000424 0.026547 0.787011 0.186017 0.022607 0.901005 0.058037 0.018350 0.043838 0.001550 0.936502 0.018110 0.005819 0.001498 0.990856 0.001826 0.006187 0.001052 0.990281 0.002480 0.022829 0.031257 0.211473 0.734441 0.379057 0.171416 0.168918 0.280609 0.308084 0.326203 0.277004 0.088709 0.323865 0.205542 0.334303 0.136289 0.361520 0.208273 0.178525 0.251681 Consensus sequence: DHDVATGCGGGTHVVH Alignment: DHDVATGCGGGTHVVH ---GBTGCAGGTGB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_primary Reverse Complement Reverse Complement Backward 4 11 0.000504 Species: Mus musculus Original motif 0.401190 0.144405 0.268531 0.185874 0.430224 0.168519 0.221247 0.180011 0.172575 0.268499 0.274136 0.284789 0.150971 0.297110 0.290868 0.261051 0.133421 0.282842 0.434718 0.149019 0.042798 0.941105 0.001785 0.014312 0.890788 0.002551 0.103316 0.003345 0.001887 0.951368 0.043722 0.003023 0.011633 0.002218 0.002269 0.983880 0.003597 0.003728 0.984819 0.007856 0.002946 0.903520 0.072457 0.021077 0.908487 0.057072 0.018256 0.016185 0.076237 0.329864 0.228896 0.365003 0.144926 0.162981 0.177370 0.514722 0.124970 0.327876 0.295814 0.251341 0.144592 0.313887 0.301912 0.239609 0.108463 0.241747 0.350296 0.299494 Consensus sequence: DDBBBCACTGCABTBBB Reverse complement motif 0.108463 0.350296 0.241747 0.299494 0.144592 0.301912 0.313887 0.239609 0.124970 0.295814 0.327876 0.251341 0.514722 0.162981 0.177370 0.144926 0.365003 0.329864 0.228896 0.076237 0.016185 0.057072 0.018256 0.908487 0.002946 0.072457 0.903520 0.021077 0.003597 0.984819 0.003728 0.007856 0.983880 0.002218 0.002269 0.011633 0.001887 0.043722 0.951368 0.003023 0.003345 0.002551 0.103316 0.890788 0.042798 0.001785 0.941105 0.014312 0.133421 0.434718 0.282842 0.149019 0.150971 0.290868 0.297110 0.261051 0.284789 0.268499 0.274136 0.172575 0.180011 0.168519 0.221247 0.430224 0.185874 0.144405 0.268531 0.401190 Consensus sequence: BBBAVTGCAGTGBBVDD Alignment: BBBAVTGCAGTGBBVDD ---GBTGCAGGTGB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Original Motif Reverse Complement Forward 6 11 0.000557 Species: Mus musculus Original motif 0.306209 0.232705 0.244475 0.216611 0.165668 0.171480 0.222584 0.440269 0.213008 0.429038 0.156385 0.201569 0.283226 0.329518 0.160795 0.226461 0.439156 0.283517 0.251270 0.026056 0.014994 0.980987 0.000714 0.003304 0.975741 0.020182 0.002909 0.001168 0.000926 0.191353 0.801648 0.006073 0.015382 0.090853 0.893043 0.000721 0.001549 0.005912 0.001713 0.990826 0.004000 0.000857 0.989667 0.005475 0.016957 0.663726 0.148127 0.171190 0.299047 0.091156 0.448649 0.161148 0.354701 0.214677 0.236757 0.193865 0.399446 0.174508 0.200036 0.226009 0.303545 0.277435 0.200094 0.218926 0.380242 0.148876 0.163367 0.307514 Consensus sequence: VBHHVCAGGTGCDVDHD Reverse complement motif 0.307514 0.148876 0.163367 0.380242 0.218926 0.277435 0.200094 0.303545 0.226009 0.174508 0.200036 0.399446 0.193865 0.214677 0.236757 0.354701 0.299047 0.448649 0.091156 0.161148 0.016957 0.148127 0.663726 0.171190 0.004000 0.989667 0.000857 0.005475 0.990826 0.005912 0.001713 0.001549 0.015382 0.893043 0.090853 0.000721 0.000926 0.801648 0.191353 0.006073 0.001168 0.020182 0.002909 0.975741 0.014994 0.000714 0.980987 0.003304 0.026056 0.283517 0.251270 0.439156 0.283226 0.160795 0.329518 0.226461 0.213008 0.156385 0.429038 0.201569 0.440269 0.171480 0.222584 0.165668 0.216611 0.232705 0.244475 0.306209 Consensus sequence: DHDBHGCACCTGBDDVB Alignment: DHDBHGCACCTGBDDVB -----BCACCTGCABC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_primary Original Motif Original Motif Backward 3 11 0.008427 Species: Mus musculus Original motif 0.168852 0.325948 0.188604 0.316596 0.150343 0.193286 0.241301 0.415069 0.091518 0.482905 0.122928 0.302648 0.472493 0.198776 0.225796 0.102935 0.294513 0.179919 0.447250 0.078318 0.014660 0.972080 0.005591 0.007668 0.954848 0.008107 0.008474 0.028571 0.006076 0.178912 0.760021 0.054991 0.052082 0.817415 0.124797 0.005707 0.019342 0.010406 0.008905 0.961347 0.005455 0.008073 0.977684 0.008788 0.042946 0.715551 0.087020 0.154483 0.116888 0.241739 0.170073 0.471300 0.315931 0.324343 0.291451 0.068274 0.199164 0.366921 0.163690 0.270226 0.218561 0.211076 0.187732 0.382631 0.145317 0.139808 0.389262 0.325614 Consensus sequence: BBYVVCAGCTGCBVHHD Reverse complement motif 0.145317 0.389262 0.139808 0.325614 0.382631 0.211076 0.187732 0.218561 0.199164 0.163690 0.366921 0.270226 0.315931 0.291451 0.324343 0.068274 0.471300 0.241739 0.170073 0.116888 0.042946 0.087020 0.715551 0.154483 0.005455 0.977684 0.008073 0.008788 0.961347 0.010406 0.008905 0.019342 0.052082 0.124797 0.817415 0.005707 0.006076 0.760021 0.178912 0.054991 0.028571 0.008107 0.008474 0.954848 0.014660 0.005591 0.972080 0.007668 0.294513 0.447250 0.179919 0.078318 0.102935 0.198776 0.225796 0.472493 0.091518 0.122928 0.482905 0.302648 0.415069 0.193286 0.241301 0.150343 0.168852 0.188604 0.325948 0.316596 Consensus sequence: HHDVVGCAGCTGVBKVB Alignment: BBYVVCAGCTGCBVHHD ----BCACCTGCABC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00420 Elk3 Original Motif Original Motif Backward 5 11 0.011173 Species: Mus musculus Original motif 0.418636 0.167911 0.195103 0.218350 0.246759 0.378552 0.216618 0.158071 0.170474 0.198507 0.329732 0.301287 0.153827 0.338948 0.166531 0.340694 0.680337 0.052303 0.181512 0.085848 0.019707 0.916463 0.055898 0.007932 0.087081 0.910099 0.002387 0.000433 0.007321 0.001499 0.990022 0.001157 0.002298 0.001866 0.993126 0.002710 0.982141 0.000524 0.001717 0.015617 0.903999 0.006376 0.001427 0.088198 0.079522 0.183730 0.730171 0.006577 0.009983 0.341624 0.056464 0.591929 0.329404 0.110758 0.301227 0.258611 0.263984 0.375830 0.189175 0.171012 0.415962 0.256170 0.174350 0.153518 0.208242 0.316512 0.281982 0.193264 Consensus sequence: DVBBACCGGAAGYDVVV Reverse complement motif 0.208242 0.281982 0.316512 0.193264 0.153518 0.256170 0.174350 0.415962 0.263984 0.189175 0.375830 0.171012 0.258611 0.110758 0.301227 0.329404 0.591929 0.341624 0.056464 0.009983 0.079522 0.730171 0.183730 0.006577 0.088198 0.006376 0.001427 0.903999 0.015617 0.000524 0.001717 0.982141 0.002298 0.993126 0.001866 0.002710 0.007321 0.990022 0.001499 0.001157 0.087081 0.002387 0.910099 0.000433 0.019707 0.055898 0.916463 0.007932 0.085848 0.052303 0.181512 0.680337 0.340694 0.338948 0.166531 0.153827 0.170474 0.329732 0.198507 0.301287 0.246759 0.216618 0.378552 0.158071 0.218350 0.167911 0.195103 0.418636 Consensus sequence: VBVDMCTTCCGGTVBVD Alignment: DVBBACCGGAAGYDVVV --BCACCTGCABC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 41 Motif name: wwAAATAATAtw Original motif 0.370370 0.166667 0.129630 0.333333 0.333333 0.166667 0.203704 0.296296 0.740741 0.018519 0.055556 0.185185 0.740741 0.055556 0.037037 0.166667 0.888889 0.018519 0.018519 0.074074 0.037037 0.000000 0.000000 0.962963 0.833333 0.037037 0.018519 0.111111 0.796296 0.018519 0.037037 0.148148 0.074074 0.055556 0.018519 0.851852 0.925926 0.055556 0.018519 0.000000 0.240741 0.166667 0.166667 0.425926 0.370370 0.129630 0.148148 0.351852 Consensus sequence: HDAAATAATADD Reserve complement motif 0.351852 0.129630 0.148148 0.370370 0.425926 0.166667 0.166667 0.240741 0.000000 0.055556 0.018519 0.925926 0.851852 0.055556 0.018519 0.074074 0.148148 0.018519 0.037037 0.796296 0.111111 0.037037 0.018519 0.833333 0.962963 0.000000 0.000000 0.037037 0.074074 0.018519 0.018519 0.888889 0.166667 0.055556 0.037037 0.740741 0.185185 0.018519 0.055556 0.740741 0.296296 0.166667 0.203704 0.333333 0.333333 0.166667 0.129630 0.370370 Consensus sequence: DDTATTATTTDH ************************************************************************ Best Matches for Motif ID 41 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00244 Tlx2 Reverse Complement Reverse Complement Backward 4 12 0.005767 Species: Mus musculus Original motif 0.105929 0.200768 0.276304 0.416999 0.605737 0.082484 0.045449 0.266331 0.616140 0.070870 0.219578 0.093411 0.207168 0.101768 0.138909 0.552155 0.205588 0.314073 0.063564 0.416776 0.753104 0.060249 0.064598 0.122049 0.785626 0.028841 0.041793 0.143739 0.035001 0.038504 0.018619 0.907876 0.039875 0.038526 0.009504 0.912095 0.920557 0.010057 0.045031 0.024356 0.806507 0.031077 0.030857 0.131559 0.170184 0.056552 0.043413 0.729851 0.630114 0.051409 0.080078 0.238398 0.554265 0.093528 0.223411 0.128796 0.183854 0.390999 0.093847 0.331300 0.289988 0.101149 0.103803 0.505061 0.400594 0.061089 0.136478 0.401839 Consensus sequence: BAATHAATTAATAAHWW Reverse complement motif 0.401839 0.061089 0.136478 0.400594 0.505061 0.101149 0.103803 0.289988 0.183854 0.093847 0.390999 0.331300 0.128796 0.093528 0.223411 0.554265 0.238398 0.051409 0.080078 0.630114 0.729851 0.056552 0.043413 0.170184 0.131559 0.031077 0.030857 0.806507 0.024356 0.010057 0.045031 0.920557 0.912095 0.038526 0.009504 0.039875 0.907876 0.038504 0.018619 0.035001 0.143739 0.028841 0.041793 0.785626 0.122049 0.060249 0.064598 0.753104 0.416776 0.314073 0.063564 0.205588 0.552155 0.101768 0.138909 0.207168 0.093411 0.070870 0.219578 0.616140 0.266331 0.082484 0.045449 0.605737 0.416999 0.200768 0.276304 0.105929 Consensus sequence: WWDTTATTAATTHATTV Alignment: WWDTTATTAATTHATTV --DDTATTATTTDH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00121 Hoxd10 Reverse Complement Reverse Complement Forward 4 12 0.006736 Species: Mus musculus Original motif 0.405345 0.293266 0.220907 0.080482 0.398063 0.099034 0.333525 0.169378 0.049753 0.190411 0.336789 0.423048 0.243698 0.226261 0.324346 0.205696 0.030873 0.549741 0.008321 0.411065 0.714225 0.228092 0.020960 0.036723 0.833992 0.010944 0.021918 0.133146 0.008898 0.026169 0.008341 0.956591 0.811684 0.004889 0.004751 0.178676 0.952107 0.004322 0.004587 0.038984 0.925365 0.008360 0.006811 0.059464 0.850659 0.058250 0.065237 0.025855 0.193369 0.242985 0.049515 0.514131 0.266774 0.080601 0.239781 0.412844 0.335522 0.125500 0.188170 0.350809 0.407171 0.120540 0.187300 0.284989 0.281181 0.242348 0.160247 0.316224 Consensus sequence: VDKVYAATAAAATDDDH Reverse complement motif 0.316224 0.242348 0.160247 0.281181 0.284989 0.120540 0.187300 0.407171 0.350809 0.125500 0.188170 0.335522 0.412844 0.080601 0.239781 0.266774 0.514131 0.242985 0.049515 0.193369 0.025855 0.058250 0.065237 0.850659 0.059464 0.008360 0.006811 0.925365 0.038984 0.004322 0.004587 0.952107 0.178676 0.004889 0.004751 0.811684 0.956591 0.026169 0.008341 0.008898 0.133146 0.010944 0.021918 0.833992 0.036723 0.228092 0.020960 0.714225 0.030873 0.008321 0.549741 0.411065 0.243698 0.324346 0.226261 0.205696 0.423048 0.190411 0.336789 0.049753 0.169378 0.099034 0.333525 0.398063 0.080482 0.293266 0.220907 0.405345 Consensus sequence: HDDDATTTTATTKVRDB Alignment: HDDDATTTTATTKVRDB ---DDTATTATTTDH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00180 Hoxd13 Reverse Complement Reverse Complement Backward 3 12 0.006852 Species: Mus musculus Original motif 0.279189 0.316791 0.190404 0.213616 0.297705 0.175638 0.191020 0.335637 0.333485 0.203858 0.174034 0.288623 0.046444 0.540349 0.083237 0.329969 0.016780 0.648667 0.003870 0.330682 0.679959 0.116873 0.002745 0.200422 0.936496 0.002013 0.026876 0.034615 0.004741 0.008734 0.003861 0.982665 0.904624 0.000869 0.005345 0.089162 0.967883 0.002295 0.001003 0.028819 0.980087 0.004768 0.002887 0.012258 0.898523 0.041633 0.022776 0.037069 0.246903 0.292446 0.069240 0.391411 0.192528 0.300908 0.105655 0.400908 0.247610 0.343317 0.190760 0.218313 0.246702 0.253595 0.176298 0.323404 Consensus sequence: HDHYYAATAAAAHHHH Reverse complement motif 0.323404 0.253595 0.176298 0.246702 0.247610 0.190760 0.343317 0.218313 0.400908 0.300908 0.105655 0.192528 0.391411 0.292446 0.069240 0.246903 0.037069 0.041633 0.022776 0.898523 0.012258 0.004768 0.002887 0.980087 0.028819 0.002295 0.001003 0.967883 0.089162 0.000869 0.005345 0.904624 0.982665 0.008734 0.003861 0.004741 0.034615 0.002013 0.026876 0.936496 0.200422 0.116873 0.002745 0.679959 0.016780 0.003870 0.648667 0.330682 0.046444 0.083237 0.540349 0.329969 0.288623 0.203858 0.174034 0.333485 0.335637 0.175638 0.191020 0.297705 0.279189 0.190404 0.316791 0.213616 Consensus sequence: HDHHTTTTATTKKHDD Alignment: HDHHTTTTATTKKHDD --DDTATTATTTDH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_secondary Original Motif Original Motif Forward 1 12 0.010833 Species: Mus musculus Original motif 0.337264 0.231140 0.283651 0.147945 0.347118 0.236817 0.257338 0.158726 0.431380 0.126811 0.187071 0.254738 0.585753 0.089587 0.164350 0.160310 0.590169 0.225841 0.088487 0.095503 0.091374 0.098551 0.099596 0.710479 0.790999 0.060485 0.081771 0.066745 0.738945 0.032660 0.093144 0.135251 0.071350 0.719067 0.064337 0.145246 0.820757 0.079130 0.029431 0.070682 0.603611 0.145951 0.097449 0.152989 0.530021 0.143634 0.190469 0.135877 0.231297 0.288099 0.276056 0.204548 0.202920 0.232513 0.431635 0.132933 0.198379 0.292889 0.308599 0.200133 Consensus sequence: VVDAATAACAAAVVB Reverse complement motif 0.198379 0.308599 0.292889 0.200133 0.202920 0.431635 0.232513 0.132933 0.231297 0.276056 0.288099 0.204548 0.135877 0.143634 0.190469 0.530021 0.152989 0.145951 0.097449 0.603611 0.070682 0.079130 0.029431 0.820757 0.071350 0.064337 0.719067 0.145246 0.135251 0.032660 0.093144 0.738945 0.066745 0.060485 0.081771 0.790999 0.710479 0.098551 0.099596 0.091374 0.095503 0.225841 0.088487 0.590169 0.160310 0.089587 0.164350 0.585753 0.254738 0.126811 0.187071 0.431380 0.158726 0.236817 0.257338 0.347118 0.147945 0.231140 0.283651 0.337264 Consensus sequence: BVVTTTGTTATTDBB Alignment: VVDAATAACAAAVVB HDAAATAATADD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00134 Hoxb13 Reverse Complement Reverse Complement Backward 3 12 0.012172 Species: Mus musculus Original motif 0.376100 0.272625 0.202253 0.149021 0.479072 0.116315 0.274952 0.129661 0.297412 0.328646 0.182054 0.191889 0.052067 0.771717 0.088083 0.088133 0.018222 0.666056 0.006952 0.308770 0.755568 0.122362 0.001339 0.120731 0.915413 0.001023 0.052340 0.031225 0.002612 0.028396 0.000695 0.968297 0.831092 0.001851 0.005615 0.161442 0.927869 0.001839 0.001169 0.069123 0.967747 0.009603 0.002871 0.019778 0.843186 0.073812 0.055868 0.027134 0.371084 0.143031 0.086222 0.399662 0.264976 0.212885 0.118960 0.403179 0.215633 0.345186 0.105518 0.333663 0.221910 0.297212 0.329310 0.151568 Consensus sequence: VRHCCAATAAAAWHHV Reverse complement motif 0.221910 0.329310 0.297212 0.151568 0.215633 0.105518 0.345186 0.333663 0.403179 0.212885 0.118960 0.264976 0.399662 0.143031 0.086222 0.371084 0.027134 0.073812 0.055868 0.843186 0.019778 0.009603 0.002871 0.967747 0.069123 0.001839 0.001169 0.927869 0.161442 0.001851 0.005615 0.831092 0.968297 0.028396 0.000695 0.002612 0.031225 0.001023 0.052340 0.915413 0.120731 0.122362 0.001339 0.755568 0.018222 0.006952 0.666056 0.308770 0.052067 0.088083 0.771717 0.088133 0.297412 0.182054 0.328646 0.191889 0.129661 0.116315 0.274952 0.479072 0.149021 0.272625 0.202253 0.376100 Consensus sequence: VDHWTTTTATTGGDKB Alignment: VDHWTTTTATTGGDKB --DDTATTATTTDH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 42 Motif name: sSGTCACGTGACSs Original motif 0.055556 0.388889 0.388889 0.166667 0.000000 0.277778 0.722222 0.000000 0.055556 0.111111 0.833333 0.000000 0.111111 0.000000 0.055556 0.833333 0.000000 0.888889 0.111111 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.944444 0.055556 0.000000 0.000000 0.055556 0.944444 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.111111 0.888889 0.000000 0.833333 0.055556 0.000000 0.111111 0.000000 0.833333 0.111111 0.055556 0.000000 0.722222 0.277778 0.000000 0.166667 0.388889 0.388889 0.055556 Consensus sequence: SGGTCACGTGACCS Reserve complement motif 0.166667 0.388889 0.388889 0.055556 0.000000 0.277778 0.722222 0.000000 0.000000 0.111111 0.833333 0.055556 0.111111 0.055556 0.000000 0.833333 0.000000 0.888889 0.111111 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.944444 0.055556 0.000000 0.000000 0.055556 0.944444 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.111111 0.888889 0.000000 0.833333 0.000000 0.055556 0.111111 0.055556 0.833333 0.111111 0.000000 0.000000 0.722222 0.277778 0.000000 0.055556 0.388889 0.388889 0.166667 Consensus sequence: SGGTCACGTGACCS ************************************************************************ Best Matches for Motif ID 42 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Original Motif Original Motif Backward 5 14 0.000000 Species: Mus musculus Original motif 0.347837 0.112349 0.403713 0.136102 0.298329 0.175329 0.324534 0.201809 0.421791 0.222553 0.113615 0.242041 0.387506 0.130670 0.161435 0.320389 0.197183 0.244864 0.304611 0.253342 0.345884 0.188786 0.278290 0.187041 0.228203 0.142148 0.408269 0.221381 0.037126 0.006772 0.231775 0.724328 0.055214 0.942800 0.001192 0.000794 0.974119 0.004466 0.015535 0.005880 0.000300 0.958145 0.007498 0.034056 0.034056 0.007498 0.958145 0.000300 0.005880 0.015535 0.004466 0.974119 0.000794 0.001192 0.942800 0.055214 0.724328 0.231775 0.006772 0.037126 0.015720 0.466476 0.315208 0.202596 0.173670 0.355170 0.210710 0.260449 0.407419 0.261539 0.134430 0.196612 0.351478 0.209698 0.262426 0.176399 0.207869 0.284582 0.198951 0.308598 0.434482 0.113724 0.184408 0.267386 0.211144 0.363745 0.173978 0.251133 Consensus sequence: RDHDBVDTCACGTGASBHVHDH Reverse complement motif 0.211144 0.173978 0.363745 0.251133 0.267386 0.113724 0.184408 0.434482 0.308598 0.284582 0.198951 0.207869 0.176399 0.209698 0.262426 0.351478 0.196612 0.261539 0.134430 0.407419 0.173670 0.210710 0.355170 0.260449 0.015720 0.315208 0.466476 0.202596 0.037126 0.231775 0.006772 0.724328 0.000794 0.942800 0.001192 0.055214 0.974119 0.015535 0.004466 0.005880 0.034056 0.958145 0.007498 0.000300 0.000300 0.007498 0.958145 0.034056 0.005880 0.004466 0.015535 0.974119 0.055214 0.001192 0.942800 0.000794 0.724328 0.006772 0.231775 0.037126 0.228203 0.408269 0.142148 0.221381 0.187041 0.188786 0.278290 0.345884 0.197183 0.304611 0.244864 0.253342 0.320389 0.130670 0.161435 0.387506 0.242041 0.222553 0.113615 0.421791 0.298329 0.324534 0.175329 0.201809 0.347837 0.403713 0.112349 0.136102 Consensus sequence: DDHBHBSTCACGTGAHBBDHHM Alignment: RDHDBVDTCACGTGASBHVHDH ----SGGTCACGTGACCS---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_primary Original Motif Reverse Complement Backward 1 14 0.022690 Species: Mus musculus Original motif 0.234855 0.152539 0.301720 0.310886 0.199226 0.147959 0.439250 0.213565 0.582926 0.274768 0.075866 0.066440 0.138829 0.475428 0.305884 0.079859 0.024979 0.969691 0.001811 0.003520 0.966345 0.003728 0.022320 0.007607 0.000598 0.907006 0.008160 0.084236 0.084236 0.008160 0.907006 0.000598 0.007607 0.022320 0.003728 0.966345 0.003520 0.001811 0.969691 0.024979 0.149140 0.241218 0.389598 0.220044 0.066440 0.075866 0.274768 0.582926 0.186990 0.346199 0.250066 0.216745 0.273437 0.225889 0.300738 0.199936 0.160893 0.111177 0.477963 0.249968 0.171790 0.101256 0.424580 0.302375 Consensus sequence: DDASCACGTGBTBVDD Reverse complement motif 0.171790 0.424580 0.101256 0.302375 0.160893 0.477963 0.111177 0.249968 0.273437 0.300738 0.225889 0.199936 0.186990 0.250066 0.346199 0.216745 0.582926 0.075866 0.274768 0.066440 0.149140 0.389598 0.241218 0.220044 0.003520 0.969691 0.001811 0.024979 0.966345 0.022320 0.003728 0.007607 0.084236 0.907006 0.008160 0.000598 0.000598 0.008160 0.907006 0.084236 0.007607 0.003728 0.022320 0.966345 0.024979 0.001811 0.969691 0.003520 0.138829 0.305884 0.475428 0.079859 0.066440 0.274768 0.075866 0.582926 0.199226 0.439250 0.147959 0.213565 0.310886 0.152539 0.301720 0.234855 Consensus sequence: HHVBABCACGTGSTHD Alignment: DDASCACGTGBTBVDD --SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Reverse Complement Original Motif Backward 1 14 0.024037 Species: Mus musculus Original motif 0.127991 0.202889 0.399822 0.269298 0.156940 0.244015 0.182364 0.416681 0.046494 0.050598 0.744311 0.158596 0.196142 0.365183 0.183389 0.255286 0.019306 0.946805 0.015210 0.018680 0.924839 0.022113 0.027620 0.025428 0.007478 0.672138 0.027789 0.292595 0.046702 0.026044 0.906146 0.021107 0.117335 0.610863 0.025132 0.246670 0.044431 0.053581 0.722748 0.179240 0.543713 0.149809 0.190030 0.116447 0.241148 0.722386 0.022547 0.013919 0.265412 0.113032 0.270602 0.350954 0.226186 0.143504 0.332746 0.297564 Consensus sequence: BBGHCACGCGACDD Reverse complement motif 0.226186 0.332746 0.143504 0.297564 0.350954 0.113032 0.270602 0.265412 0.241148 0.022547 0.722386 0.013919 0.116447 0.149809 0.190030 0.543713 0.044431 0.722748 0.053581 0.179240 0.117335 0.025132 0.610863 0.246670 0.046702 0.906146 0.026044 0.021107 0.007478 0.027789 0.672138 0.292595 0.025428 0.022113 0.027620 0.924839 0.019306 0.015210 0.946805 0.018680 0.196142 0.183389 0.365183 0.255286 0.046494 0.744311 0.050598 0.158596 0.416681 0.244015 0.182364 0.156940 0.127991 0.399822 0.202889 0.269298 Consensus sequence: HDGTCGCGTGDCVB Alignment: BBGHCACGCGACDD SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00103 Jundm2_primary Original Motif Original Motif Backward 2 14 0.025399 Species: Mus musculus Original motif 0.213023 0.312553 0.241727 0.232696 0.126878 0.453780 0.251405 0.167937 0.127927 0.138541 0.528637 0.204895 0.572671 0.136079 0.242107 0.049142 0.004569 0.015235 0.003215 0.976981 0.004594 0.008024 0.836426 0.150956 0.966548 0.003255 0.009947 0.020250 0.001636 0.899650 0.004880 0.093834 0.093834 0.004880 0.899650 0.001636 0.020250 0.009947 0.003255 0.966548 0.150956 0.836426 0.008024 0.004594 0.976981 0.003215 0.015235 0.004569 0.006508 0.324308 0.040126 0.629058 0.170728 0.554933 0.116757 0.157582 0.255966 0.170983 0.430910 0.142142 0.228601 0.267456 0.166199 0.337744 Consensus sequence: BBGATGACGTCAYCVH Reverse complement motif 0.337744 0.267456 0.166199 0.228601 0.255966 0.430910 0.170983 0.142142 0.170728 0.116757 0.554933 0.157582 0.629058 0.324308 0.040126 0.006508 0.004569 0.003215 0.015235 0.976981 0.150956 0.008024 0.836426 0.004594 0.966548 0.009947 0.003255 0.020250 0.093834 0.899650 0.004880 0.001636 0.001636 0.004880 0.899650 0.093834 0.020250 0.003255 0.009947 0.966548 0.004594 0.836426 0.008024 0.150956 0.976981 0.015235 0.003215 0.004569 0.049142 0.136079 0.242107 0.572671 0.127927 0.528637 0.138541 0.204895 0.126878 0.251405 0.453780 0.167937 0.213023 0.241727 0.312553 0.232696 Consensus sequence: HVGMTGACGTCATCBB Alignment: BBGATGACGTCAYCVH -SGGTCACGTGACCS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00020 Atf1_primary Original Motif Original Motif Backward 2 14 0.025916 Species: Mus musculus Original motif 0.381335 0.135129 0.244887 0.238648 0.139538 0.419619 0.195665 0.245178 0.158070 0.098493 0.409974 0.333462 0.472756 0.096594 0.388246 0.042403 0.008868 0.028811 0.005332 0.956990 0.014102 0.014269 0.863476 0.108153 0.962594 0.004653 0.011816 0.020937 0.003091 0.949099 0.003165 0.044646 0.044646 0.003165 0.949099 0.003091 0.020937 0.011816 0.004653 0.962594 0.108153 0.863476 0.014269 0.014102 0.956990 0.005332 0.028811 0.008868 0.049761 0.357863 0.144826 0.447550 0.225769 0.448432 0.142340 0.183460 0.264766 0.097627 0.493031 0.144576 0.352319 0.180279 0.236767 0.230635 Consensus sequence: DBDRTGACGTCAYHRD Reverse complement motif 0.230635 0.180279 0.236767 0.352319 0.264766 0.493031 0.097627 0.144576 0.225769 0.142340 0.448432 0.183460 0.447550 0.357863 0.144826 0.049761 0.008868 0.005332 0.028811 0.956990 0.108153 0.014269 0.863476 0.014102 0.962594 0.011816 0.004653 0.020937 0.044646 0.949099 0.003165 0.003091 0.003091 0.003165 0.949099 0.044646 0.020937 0.004653 0.011816 0.962594 0.014102 0.863476 0.014269 0.108153 0.956990 0.028811 0.005332 0.008868 0.042403 0.096594 0.388246 0.472756 0.158070 0.409974 0.098493 0.333462 0.139538 0.195665 0.419619 0.245178 0.238648 0.135129 0.244887 0.381335 Consensus sequence: DMDMTGACGTCAKHBD Alignment: DBDRTGACGTCAYHRD -SGGTCACGTGACCS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 43 Motif name: wsTACwGTAsw Original motif 0.277778 0.222222 0.166667 0.333333 0.166667 0.444444 0.277778 0.111111 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.111111 0.277778 0.444444 0.166667 0.333333 0.166667 0.222222 0.277778 Consensus sequence: HVTACWGTABD Reserve complement motif 0.277778 0.166667 0.222222 0.333333 0.111111 0.444444 0.277778 0.166667 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.277778 0.444444 0.111111 0.333333 0.222222 0.166667 0.277778 Consensus sequence: DBTACWGTAVH ************************************************************************ Best Matches for Motif ID 43 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00052 Osr2_primary Reverse Complement Reverse Complement Backward 2 11 0.000000 Species: Mus musculus Original motif 0.295210 0.230759 0.178832 0.295199 0.286163 0.186772 0.186150 0.340915 0.287577 0.235045 0.329453 0.147924 0.263264 0.191325 0.081978 0.463433 0.839420 0.118123 0.018788 0.023669 0.005488 0.984397 0.000830 0.009284 0.660134 0.001532 0.336574 0.001760 0.003020 0.001773 0.993144 0.002063 0.039664 0.001060 0.005054 0.954222 0.980339 0.000636 0.016776 0.002249 0.003849 0.001418 0.992166 0.002568 0.000858 0.950172 0.007228 0.041743 0.342840 0.230712 0.133570 0.292878 0.342486 0.316980 0.167294 0.173240 0.362426 0.178913 0.146709 0.311952 0.266586 0.140406 0.435643 0.157365 Consensus sequence: HHVHACRGTAGCHHHD Reverse complement motif 0.266586 0.435643 0.140406 0.157365 0.311952 0.178913 0.146709 0.362426 0.173240 0.316980 0.167294 0.342486 0.292878 0.230712 0.133570 0.342840 0.000858 0.007228 0.950172 0.041743 0.003849 0.992166 0.001418 0.002568 0.002249 0.000636 0.016776 0.980339 0.954222 0.001060 0.005054 0.039664 0.003020 0.993144 0.001773 0.002063 0.001760 0.001532 0.336574 0.660134 0.005488 0.000830 0.984397 0.009284 0.023669 0.118123 0.018788 0.839420 0.463433 0.191325 0.081978 0.263264 0.287577 0.329453 0.235045 0.147924 0.340915 0.186772 0.186150 0.286163 0.295199 0.230759 0.178832 0.295210 Consensus sequence: HHHHGCTACKGTHVHH Alignment: HHHHGCTACKGTHVHH ----DBTACWGTAVH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00027 Osr1_primary Reverse Complement Reverse Complement Backward 2 11 0.004806 Species: Mus musculus Original motif 0.260366 0.252887 0.224273 0.262474 0.239931 0.233883 0.190643 0.335543 0.257637 0.188706 0.242480 0.311177 0.323833 0.165978 0.161144 0.349046 0.824983 0.119267 0.027014 0.028736 0.009055 0.974108 0.000889 0.015947 0.659219 0.001516 0.337361 0.001905 0.002965 0.001643 0.993070 0.002321 0.047380 0.001758 0.009593 0.941269 0.974073 0.000741 0.023187 0.001999 0.006256 0.001341 0.990114 0.002290 0.001372 0.921382 0.010719 0.066527 0.449788 0.160658 0.105504 0.284050 0.392727 0.304490 0.187448 0.115335 0.361758 0.209213 0.175805 0.253224 0.420972 0.108912 0.289406 0.180710 Consensus sequence: HHDHACRGTAGCHVHD Reverse complement motif 0.180710 0.108912 0.289406 0.420972 0.253224 0.209213 0.175805 0.361758 0.115335 0.304490 0.187448 0.392727 0.284050 0.160658 0.105504 0.449788 0.001372 0.010719 0.921382 0.066527 0.006256 0.990114 0.001341 0.002290 0.001999 0.000741 0.023187 0.974073 0.941269 0.001758 0.009593 0.047380 0.002965 0.993070 0.001643 0.002321 0.001905 0.001516 0.337361 0.659219 0.009055 0.000889 0.974108 0.015947 0.028736 0.119267 0.027014 0.824983 0.349046 0.165978 0.161144 0.323833 0.311177 0.188706 0.242480 0.257637 0.335543 0.233883 0.190643 0.239931 0.262474 0.252887 0.224273 0.260366 Consensus sequence: DHBHGCTACKGTHDHH Alignment: DHBHGCTACKGTHDHH ----DBTACWGTAVH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_primary Original Motif Reverse Complement Backward 4 11 0.016538 Species: Mus musculus Original motif 0.401190 0.144405 0.268531 0.185874 0.430224 0.168519 0.221247 0.180011 0.172575 0.268499 0.274136 0.284789 0.150971 0.297110 0.290868 0.261051 0.133421 0.282842 0.434718 0.149019 0.042798 0.941105 0.001785 0.014312 0.890788 0.002551 0.103316 0.003345 0.001887 0.951368 0.043722 0.003023 0.011633 0.002218 0.002269 0.983880 0.003597 0.003728 0.984819 0.007856 0.002946 0.903520 0.072457 0.021077 0.908487 0.057072 0.018256 0.016185 0.076237 0.329864 0.228896 0.365003 0.144926 0.162981 0.177370 0.514722 0.124970 0.327876 0.295814 0.251341 0.144592 0.313887 0.301912 0.239609 0.108463 0.241747 0.350296 0.299494 Consensus sequence: DDBBBCACTGCABTBBB Reverse complement motif 0.108463 0.350296 0.241747 0.299494 0.144592 0.301912 0.313887 0.239609 0.124970 0.295814 0.327876 0.251341 0.514722 0.162981 0.177370 0.144926 0.365003 0.329864 0.228896 0.076237 0.016185 0.057072 0.018256 0.908487 0.002946 0.072457 0.903520 0.021077 0.003597 0.984819 0.003728 0.007856 0.983880 0.002218 0.002269 0.011633 0.001887 0.043722 0.951368 0.003023 0.003345 0.002551 0.103316 0.890788 0.042798 0.001785 0.941105 0.014312 0.133421 0.434718 0.282842 0.149019 0.150971 0.290868 0.297110 0.261051 0.284789 0.268499 0.274136 0.172575 0.180011 0.168519 0.221247 0.430224 0.185874 0.144405 0.268531 0.401190 Consensus sequence: BBBAVTGCAGTGBBVDD Alignment: BBBAVTGCAGTGBBVDD ---HVTACWGTABD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Reverse Complement Original Motif Backward 7 11 0.024802 Species: Mus musculus Original motif 0.360997 0.300272 0.115555 0.223177 0.309749 0.228429 0.166233 0.295589 0.149419 0.176868 0.240155 0.433558 0.379704 0.095791 0.276373 0.248133 0.394549 0.174184 0.130641 0.300626 0.443749 0.070776 0.211081 0.274393 0.364301 0.074356 0.370406 0.190936 0.791976 0.038475 0.093390 0.076159 0.963721 0.001826 0.002456 0.031997 0.004516 0.954596 0.008092 0.032796 0.981080 0.002062 0.002161 0.014697 0.986185 0.001846 0.006976 0.004992 0.059567 0.003649 0.002189 0.934595 0.495328 0.024257 0.240450 0.239965 0.305027 0.094878 0.526069 0.074025 0.418442 0.196237 0.158323 0.226998 0.336713 0.220452 0.191155 0.251680 0.192296 0.300342 0.169047 0.338315 0.240387 0.144634 0.128513 0.486465 0.290763 0.271259 0.116600 0.321377 0.224825 0.296233 0.229255 0.249687 0.493240 0.171285 0.075148 0.260326 Consensus sequence: HHBDHDDAACAATDRHHHHHBW Reverse complement motif 0.260326 0.171285 0.075148 0.493240 0.224825 0.229255 0.296233 0.249687 0.321377 0.271259 0.116600 0.290763 0.486465 0.144634 0.128513 0.240387 0.338315 0.300342 0.169047 0.192296 0.251680 0.220452 0.191155 0.336713 0.226998 0.196237 0.158323 0.418442 0.305027 0.526069 0.094878 0.074025 0.239965 0.024257 0.240450 0.495328 0.934595 0.003649 0.002189 0.059567 0.004992 0.001846 0.006976 0.986185 0.014697 0.002062 0.002161 0.981080 0.004516 0.008092 0.954596 0.032796 0.031997 0.001826 0.002456 0.963721 0.076159 0.038475 0.093390 0.791976 0.364301 0.370406 0.074356 0.190936 0.274393 0.070776 0.211081 0.443749 0.300626 0.174184 0.130641 0.394549 0.248133 0.095791 0.276373 0.379704 0.433558 0.176868 0.240155 0.149419 0.295589 0.228429 0.166233 0.309749 0.223177 0.300272 0.115555 0.360997 Consensus sequence: WBHHHHHMDATTGTTHDHDVHH Alignment: HHBDHDDAACAATDRHHHHHBW -----DBTACWGTAVH------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00023 Sox30_primary Original Motif Reverse Complement Backward 3 11 0.029417 Species: Mus musculus Original motif 0.372432 0.102933 0.322145 0.202491 0.328072 0.182071 0.157347 0.332510 0.289417 0.084511 0.292873 0.333198 0.157571 0.227851 0.441662 0.172917 0.716832 0.049010 0.201411 0.032747 0.957368 0.003162 0.004402 0.035068 0.003907 0.862678 0.009407 0.124008 0.977231 0.007658 0.004263 0.010847 0.976481 0.004510 0.015225 0.003784 0.067568 0.004353 0.005071 0.923008 0.158205 0.108442 0.467023 0.266330 0.334549 0.091557 0.510241 0.063654 0.456431 0.182602 0.150234 0.210732 0.387485 0.241062 0.151504 0.219950 0.188387 0.269857 0.176514 0.365242 0.175680 0.243984 0.165833 0.414502 Consensus sequence: DHDBAACAATDRHHHH Reverse complement motif 0.414502 0.243984 0.165833 0.175680 0.365242 0.269857 0.176514 0.188387 0.219950 0.241062 0.151504 0.387485 0.210732 0.182602 0.150234 0.456431 0.334549 0.510241 0.091557 0.063654 0.158205 0.467023 0.108442 0.266330 0.923008 0.004353 0.005071 0.067568 0.003784 0.004510 0.015225 0.976481 0.010847 0.007658 0.004263 0.977231 0.003907 0.009407 0.862678 0.124008 0.035068 0.003162 0.004402 0.957368 0.032747 0.049010 0.201411 0.716832 0.157571 0.441662 0.227851 0.172917 0.333198 0.084511 0.292873 0.289417 0.332510 0.182071 0.157347 0.328072 0.202491 0.102933 0.322145 0.372432 Consensus sequence: HHHHMHATTGTTBDHD Alignment: HHHHMHATTGTTBDHD ---HVTACWGTABD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 44 Motif name: dhACATTCTkh Original motif 0.333333 0.000000 0.333333 0.333333 0.333333 0.333333 0.000000 0.333333 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.333333 0.333333 0.333333 0.000000 0.333333 Consensus sequence: DHACATTCTGH Reserve complement motif 0.333333 0.333333 0.000000 0.333333 0.000000 0.666667 0.000000 0.333333 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.333333 0.333333 0.000000 0.333333 0.333333 0.000000 0.333333 0.333333 Consensus sequence: HCAGAATGTHD ************************************************************************ Best Matches for Motif ID 44 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00038 Spdef_secondary Reverse Complement Reverse Complement Forward 4 11 0.005816 Species: Mus musculus Original motif 0.249693 0.170111 0.349462 0.230734 0.417537 0.133630 0.158772 0.290062 0.241753 0.248691 0.251987 0.257568 0.351468 0.208028 0.178365 0.262139 0.685401 0.048428 0.173290 0.092880 0.105542 0.546881 0.114355 0.233222 0.768958 0.014653 0.109429 0.106961 0.035014 0.019209 0.022146 0.923631 0.026411 0.928142 0.015617 0.029830 0.022321 0.922707 0.029827 0.025145 0.027563 0.088841 0.036549 0.847047 0.773436 0.042478 0.008878 0.175207 0.033877 0.188822 0.507219 0.270082 0.285243 0.151973 0.056921 0.505863 0.446072 0.155307 0.182833 0.215787 0.302102 0.163570 0.398527 0.135801 Consensus sequence: DDBHACATCCTAKWDV Reverse complement motif 0.302102 0.398527 0.163570 0.135801 0.215787 0.155307 0.182833 0.446072 0.505863 0.151973 0.056921 0.285243 0.033877 0.507219 0.188822 0.270082 0.175207 0.042478 0.008878 0.773436 0.847047 0.088841 0.036549 0.027563 0.022321 0.029827 0.922707 0.025145 0.026411 0.015617 0.928142 0.029830 0.923631 0.019209 0.022146 0.035014 0.106961 0.014653 0.109429 0.768958 0.105542 0.114355 0.546881 0.233222 0.092880 0.048428 0.173290 0.685401 0.262139 0.208028 0.178365 0.351468 0.257568 0.248691 0.251987 0.241753 0.290062 0.133630 0.158772 0.417537 0.249693 0.349462 0.170111 0.230734 Consensus sequence: VDWYTAGGATGTHVDH Alignment: VDWYTAGGATGTHVDH ---HCAGAATGTHD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Original Motif Reverse Complement Forward 8 11 0.005829 Species: Mus musculus Original motif 0.399785 0.446658 0.111435 0.042122 0.535175 0.103991 0.089706 0.271128 0.078171 0.387987 0.375083 0.158759 0.309001 0.519142 0.070618 0.101239 0.201844 0.255818 0.323149 0.219190 0.534101 0.109845 0.235026 0.121028 0.656038 0.037473 0.261484 0.045006 0.315713 0.164290 0.471815 0.048182 0.651960 0.009412 0.328237 0.010391 0.937365 0.017313 0.007516 0.037807 0.019983 0.044238 0.012387 0.923392 0.061195 0.021485 0.881645 0.035675 0.017521 0.952998 0.013139 0.016342 0.254160 0.029735 0.493023 0.223082 0.239200 0.593324 0.114503 0.052973 0.610822 0.071539 0.099169 0.218470 0.166610 0.389712 0.204400 0.239278 0.227752 0.361626 0.178497 0.232125 0.537030 0.182466 0.026035 0.254470 0.235902 0.151006 0.043788 0.569304 0.081851 0.250397 0.590059 0.077693 0.340417 0.189613 0.272075 0.197895 Consensus sequence: MWSMBAARRATGCDCABHATGD Reverse complement motif 0.197895 0.189613 0.272075 0.340417 0.081851 0.590059 0.250397 0.077693 0.569304 0.151006 0.043788 0.235902 0.254470 0.182466 0.026035 0.537030 0.227752 0.178497 0.361626 0.232125 0.166610 0.204400 0.389712 0.239278 0.218470 0.071539 0.099169 0.610822 0.239200 0.114503 0.593324 0.052973 0.254160 0.493023 0.029735 0.223082 0.017521 0.013139 0.952998 0.016342 0.061195 0.881645 0.021485 0.035675 0.923392 0.044238 0.012387 0.019983 0.037807 0.017313 0.007516 0.937365 0.010391 0.009412 0.328237 0.651960 0.315713 0.471815 0.164290 0.048182 0.045006 0.037473 0.261484 0.656038 0.121028 0.109845 0.235026 0.534101 0.201844 0.323149 0.255818 0.219190 0.309001 0.070618 0.519142 0.101239 0.078171 0.375083 0.387987 0.158759 0.271128 0.103991 0.089706 0.535175 0.399785 0.111435 0.446658 0.042122 Consensus sequence: DCATDBTGHGCATKMTTBRSWR Alignment: DCATDBTGHGCATKMTTBRSWR -------DHACATTCTGH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00023 Sox30_primary Original Motif Reverse Complement Backward 4 11 0.006131 Species: Mus musculus Original motif 0.372432 0.102933 0.322145 0.202491 0.328072 0.182071 0.157347 0.332510 0.289417 0.084511 0.292873 0.333198 0.157571 0.227851 0.441662 0.172917 0.716832 0.049010 0.201411 0.032747 0.957368 0.003162 0.004402 0.035068 0.003907 0.862678 0.009407 0.124008 0.977231 0.007658 0.004263 0.010847 0.976481 0.004510 0.015225 0.003784 0.067568 0.004353 0.005071 0.923008 0.158205 0.108442 0.467023 0.266330 0.334549 0.091557 0.510241 0.063654 0.456431 0.182602 0.150234 0.210732 0.387485 0.241062 0.151504 0.219950 0.188387 0.269857 0.176514 0.365242 0.175680 0.243984 0.165833 0.414502 Consensus sequence: DHDBAACAATDRHHHH Reverse complement motif 0.414502 0.243984 0.165833 0.175680 0.365242 0.269857 0.176514 0.188387 0.219950 0.241062 0.151504 0.387485 0.210732 0.182602 0.150234 0.456431 0.334549 0.510241 0.091557 0.063654 0.158205 0.467023 0.108442 0.266330 0.923008 0.004353 0.005071 0.067568 0.003784 0.004510 0.015225 0.976481 0.010847 0.007658 0.004263 0.977231 0.003907 0.009407 0.862678 0.124008 0.035068 0.003162 0.004402 0.957368 0.032747 0.049010 0.201411 0.716832 0.157571 0.441662 0.227851 0.172917 0.333198 0.084511 0.292873 0.289417 0.332510 0.182071 0.157347 0.328072 0.202491 0.102933 0.322145 0.372432 Consensus sequence: HHHHMHATTGTTBDHD Alignment: HHHHMHATTGTTBDHD --DHACATTCTGH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Original Motif Reverse Complement Forward 6 11 0.011928 Species: Mus musculus Original motif 0.360997 0.300272 0.115555 0.223177 0.309749 0.228429 0.166233 0.295589 0.149419 0.176868 0.240155 0.433558 0.379704 0.095791 0.276373 0.248133 0.394549 0.174184 0.130641 0.300626 0.443749 0.070776 0.211081 0.274393 0.364301 0.074356 0.370406 0.190936 0.791976 0.038475 0.093390 0.076159 0.963721 0.001826 0.002456 0.031997 0.004516 0.954596 0.008092 0.032796 0.981080 0.002062 0.002161 0.014697 0.986185 0.001846 0.006976 0.004992 0.059567 0.003649 0.002189 0.934595 0.495328 0.024257 0.240450 0.239965 0.305027 0.094878 0.526069 0.074025 0.418442 0.196237 0.158323 0.226998 0.336713 0.220452 0.191155 0.251680 0.192296 0.300342 0.169047 0.338315 0.240387 0.144634 0.128513 0.486465 0.290763 0.271259 0.116600 0.321377 0.224825 0.296233 0.229255 0.249687 0.493240 0.171285 0.075148 0.260326 Consensus sequence: HHBDHDDAACAATDRHHHHHBW Reverse complement motif 0.260326 0.171285 0.075148 0.493240 0.224825 0.229255 0.296233 0.249687 0.321377 0.271259 0.116600 0.290763 0.486465 0.144634 0.128513 0.240387 0.338315 0.300342 0.169047 0.192296 0.251680 0.220452 0.191155 0.336713 0.226998 0.196237 0.158323 0.418442 0.305027 0.526069 0.094878 0.074025 0.239965 0.024257 0.240450 0.495328 0.934595 0.003649 0.002189 0.059567 0.004992 0.001846 0.006976 0.986185 0.014697 0.002062 0.002161 0.981080 0.004516 0.008092 0.954596 0.032796 0.031997 0.001826 0.002456 0.963721 0.076159 0.038475 0.093390 0.791976 0.364301 0.370406 0.074356 0.190936 0.274393 0.070776 0.211081 0.443749 0.300626 0.174184 0.130641 0.394549 0.248133 0.095791 0.276373 0.379704 0.433558 0.176868 0.240155 0.149419 0.295589 0.228429 0.166233 0.309749 0.223177 0.300272 0.115555 0.360997 Consensus sequence: WBHHHHHMDATTGTTHDHDVHH Alignment: WBHHHHHMDATTGTTHDHDVHH -----DHACATTCTGH------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Original Motif Reverse Complement Forward 3 11 0.012280 Species: Mus musculus Original motif 0.351812 0.238467 0.143954 0.265768 0.195246 0.235838 0.281473 0.287443 0.349478 0.172616 0.210739 0.267167 0.484061 0.110438 0.173131 0.232370 0.276692 0.070713 0.479604 0.172991 0.859124 0.044167 0.083951 0.012758 0.975608 0.002029 0.002285 0.020079 0.006422 0.978485 0.007124 0.007969 0.987489 0.003025 0.002868 0.006617 0.987739 0.005463 0.002730 0.004067 0.693013 0.004067 0.002445 0.300475 0.189100 0.003677 0.801408 0.005814 0.352090 0.072517 0.567737 0.007656 0.542316 0.176545 0.192768 0.088371 0.196382 0.304176 0.205985 0.293457 0.289415 0.201358 0.182937 0.326290 0.385801 0.216362 0.152363 0.245475 Consensus sequence: HBDDRAACAAAGRABHH Reverse complement motif 0.245475 0.216362 0.152363 0.385801 0.326290 0.201358 0.182937 0.289415 0.196382 0.205985 0.304176 0.293457 0.088371 0.176545 0.192768 0.542316 0.352090 0.567737 0.072517 0.007656 0.189100 0.801408 0.003677 0.005814 0.300475 0.004067 0.002445 0.693013 0.004067 0.005463 0.002730 0.987739 0.006617 0.003025 0.002868 0.987489 0.006422 0.007124 0.978485 0.007969 0.020079 0.002029 0.002285 0.975608 0.012758 0.044167 0.083951 0.859124 0.276692 0.479604 0.070713 0.172991 0.232370 0.110438 0.173131 0.484061 0.267167 0.172616 0.210739 0.349478 0.287443 0.235838 0.281473 0.195246 0.265768 0.238467 0.143954 0.351812 Consensus sequence: HHBTMCTTTGTTMDDVH Alignment: HHBTMCTTTGTTMDDVH --DHACATTCTGH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 45 Motif name: wbgTAAATAww Original motif 0.285714 0.142857 0.178571 0.392857 0.214286 0.285714 0.250000 0.250000 0.142857 0.071429 0.678571 0.107143 0.000000 0.000000 0.000000 1.000000 0.928571 0.000000 0.035714 0.035714 0.821429 0.107143 0.035714 0.035714 0.821429 0.000000 0.178571 0.000000 0.000000 0.071429 0.000000 0.928571 0.928571 0.035714 0.035714 0.000000 0.285714 0.214286 0.142857 0.357143 0.392857 0.178571 0.178571 0.250000 Consensus sequence: DBGTAAATAHD Reserve complement motif 0.250000 0.178571 0.178571 0.392857 0.357143 0.214286 0.142857 0.285714 0.000000 0.035714 0.035714 0.928571 0.928571 0.071429 0.000000 0.000000 0.000000 0.000000 0.178571 0.821429 0.035714 0.107143 0.035714 0.821429 0.035714 0.000000 0.035714 0.928571 1.000000 0.000000 0.000000 0.000000 0.142857 0.678571 0.071429 0.107143 0.214286 0.250000 0.285714 0.250000 0.392857 0.142857 0.178571 0.285714 Consensus sequence: DHTATTTACBD ************************************************************************ Best Matches for Motif ID 45 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00242 Hoxc8 Reverse Complement Reverse Complement Forward 3 11 0.000000 Species: Mus musculus Original motif 0.207757 0.224760 0.242606 0.324877 0.281324 0.192775 0.088963 0.436938 0.244120 0.097112 0.411478 0.247291 0.315658 0.098135 0.358617 0.227589 0.285730 0.169686 0.369841 0.174744 0.128507 0.066146 0.562148 0.243199 0.010261 0.077035 0.002960 0.909744 0.913373 0.045800 0.004323 0.036504 0.973569 0.009101 0.004269 0.013060 0.013060 0.004269 0.009101 0.973569 0.036504 0.004323 0.045800 0.913373 0.909744 0.002960 0.077035 0.010261 0.348251 0.333707 0.038080 0.279963 0.174744 0.369841 0.169686 0.285730 0.205631 0.095734 0.416805 0.281830 0.087198 0.156910 0.166089 0.589803 Consensus sequence: BHDDDGTAATTAHHDT Reverse complement motif 0.589803 0.156910 0.166089 0.087198 0.205631 0.416805 0.095734 0.281830 0.174744 0.169686 0.369841 0.285730 0.279963 0.333707 0.038080 0.348251 0.010261 0.002960 0.077035 0.909744 0.913373 0.004323 0.045800 0.036504 0.973569 0.004269 0.009101 0.013060 0.013060 0.009101 0.004269 0.973569 0.036504 0.045800 0.004323 0.913373 0.909744 0.077035 0.002960 0.010261 0.128507 0.562148 0.066146 0.243199 0.285730 0.369841 0.169686 0.174744 0.315658 0.358617 0.098135 0.227589 0.244120 0.411478 0.097112 0.247291 0.436938 0.192775 0.088963 0.281324 0.324877 0.224760 0.242606 0.207757 Consensus sequence: AHDHTAATTACHHHHV Alignment: AHDHTAATTACHHHHV --DHTATTTACBD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_primary Original Motif Original Motif Backward 4 11 0.004535 Species: Mus musculus Original motif 0.335487 0.205062 0.128957 0.330494 0.411635 0.179625 0.175701 0.233038 0.412976 0.128602 0.091890 0.366532 0.608396 0.079002 0.107142 0.205460 0.433474 0.035203 0.153143 0.378180 0.087552 0.005003 0.894586 0.012858 0.004459 0.038951 0.001109 0.955481 0.924470 0.068560 0.001165 0.005805 0.920483 0.070039 0.001674 0.007805 0.988335 0.001902 0.003155 0.006608 0.001527 0.656726 0.002699 0.339047 0.987505 0.001810 0.004336 0.006349 0.719584 0.065184 0.050384 0.164848 0.535389 0.099997 0.102849 0.261764 0.245215 0.272017 0.301499 0.181269 0.306107 0.209040 0.248687 0.236166 0.223744 0.278668 0.251931 0.245657 Consensus sequence: HHWAWGTAAAYAAAVDB Reverse complement motif 0.223744 0.251931 0.278668 0.245657 0.236166 0.209040 0.248687 0.306107 0.245215 0.301499 0.272017 0.181269 0.261764 0.099997 0.102849 0.535389 0.164848 0.065184 0.050384 0.719584 0.006349 0.001810 0.004336 0.987505 0.001527 0.002699 0.656726 0.339047 0.006608 0.001902 0.003155 0.988335 0.007805 0.070039 0.001674 0.920483 0.005805 0.068560 0.001165 0.924470 0.955481 0.038951 0.001109 0.004459 0.087552 0.894586 0.005003 0.012858 0.378180 0.035203 0.153143 0.433474 0.205460 0.079002 0.107142 0.608396 0.366532 0.128602 0.091890 0.412976 0.233038 0.179625 0.175701 0.411635 0.330494 0.205062 0.128957 0.335487 Consensus sequence: BDVTTTKTTTACWTWHH Alignment: HHWAWGTAAAYAAAVDB ---DBGTAAATAHD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_primary Original Motif Original Motif Forward 4 11 0.004905 Species: Mus musculus Original motif 0.273456 0.257473 0.208488 0.260583 0.338566 0.133379 0.306363 0.221693 0.475488 0.192852 0.156858 0.174803 0.506619 0.132646 0.170373 0.190362 0.349042 0.127275 0.325924 0.197759 0.303850 0.013619 0.678034 0.004497 0.014136 0.015691 0.003073 0.967100 0.913373 0.082928 0.001910 0.001789 0.956294 0.017745 0.000584 0.025378 0.987796 0.001685 0.004159 0.006360 0.002288 0.814764 0.001427 0.181521 0.986707 0.002688 0.003346 0.007259 0.787378 0.065481 0.057961 0.089180 0.572982 0.089910 0.066184 0.270924 0.224167 0.339979 0.258886 0.176968 0.268414 0.272007 0.239541 0.220038 0.241771 0.394748 0.174273 0.189208 Consensus sequence: HDHADGTAAACAAAVVH Reverse complement motif 0.241771 0.174273 0.394748 0.189208 0.268414 0.239541 0.272007 0.220038 0.224167 0.258886 0.339979 0.176968 0.270924 0.089910 0.066184 0.572982 0.089180 0.065481 0.057961 0.787378 0.007259 0.002688 0.003346 0.986707 0.002288 0.001427 0.814764 0.181521 0.006360 0.001685 0.004159 0.987796 0.025378 0.017745 0.000584 0.956294 0.001789 0.082928 0.001910 0.913373 0.967100 0.015691 0.003073 0.014136 0.303850 0.678034 0.013619 0.004497 0.197759 0.127275 0.325924 0.349042 0.190362 0.132646 0.170373 0.506619 0.174803 0.192852 0.156858 0.475488 0.221693 0.133379 0.306363 0.338566 0.260583 0.257473 0.208488 0.273456 Consensus sequence: DVVTTTGTTTACDTHDH Alignment: HDHADGTAAACAAAVVH ---DBGTAAATAHD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00041 Foxj1_primary Original Motif Original Motif Backward 5 11 0.006565 Species: Mus musculus Original motif 0.446042 0.209997 0.124191 0.219770 0.271534 0.218131 0.245258 0.265077 0.368646 0.184693 0.168482 0.278180 0.348384 0.034204 0.583335 0.034077 0.040365 0.085618 0.013162 0.860855 0.824790 0.156631 0.004063 0.014515 0.835134 0.069381 0.003505 0.091980 0.967572 0.009280 0.006259 0.016890 0.009507 0.909577 0.004492 0.076424 0.947956 0.006994 0.008177 0.036873 0.599204 0.170666 0.065622 0.164508 0.708795 0.035865 0.070557 0.184782 0.303191 0.287145 0.184748 0.224917 0.285550 0.184167 0.248662 0.281621 0.235315 0.210836 0.254428 0.299421 0.220038 0.158539 0.286552 0.334871 Consensus sequence: HDHRTAAACAAAHDDD Reverse complement motif 0.334871 0.158539 0.286552 0.220038 0.299421 0.210836 0.254428 0.235315 0.281621 0.184167 0.248662 0.285550 0.224917 0.287145 0.184748 0.303191 0.184782 0.035865 0.070557 0.708795 0.164508 0.170666 0.065622 0.599204 0.036873 0.006994 0.008177 0.947956 0.009507 0.004492 0.909577 0.076424 0.016890 0.009280 0.006259 0.967572 0.091980 0.069381 0.003505 0.835134 0.014515 0.156631 0.004063 0.824790 0.860855 0.085618 0.013162 0.040365 0.348384 0.583335 0.034204 0.034077 0.278180 0.184693 0.168482 0.368646 0.265077 0.218131 0.245258 0.271534 0.219770 0.209997 0.124191 0.446042 Consensus sequence: DDDHTTTGTTTAMHDH Alignment: HDHRTAAACAAAHDDD -DBGTAAATAHD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00182 Hoxa6 Original Motif Reverse Complement Backward 3 11 0.008635 Species: Mus musculus Original motif 0.583501 0.146680 0.197544 0.072276 0.427857 0.353560 0.089642 0.128941 0.195697 0.096442 0.593720 0.114140 0.189276 0.048267 0.483269 0.279188 0.005990 0.090620 0.000813 0.902576 0.949399 0.035300 0.001844 0.013457 0.984085 0.006313 0.001863 0.007739 0.007739 0.001863 0.006313 0.984085 0.013457 0.001844 0.035300 0.949399 0.902576 0.000813 0.090620 0.005990 0.152255 0.677055 0.087732 0.082958 0.114140 0.593720 0.096442 0.195697 0.234649 0.271494 0.063511 0.430347 0.334155 0.324603 0.120490 0.220751 0.602114 0.075922 0.081032 0.240932 0.219592 0.167291 0.277257 0.335860 Consensus sequence: AMGKTAATTACCHHAD Reverse complement motif 0.335860 0.167291 0.277257 0.219592 0.240932 0.075922 0.081032 0.602114 0.220751 0.324603 0.120490 0.334155 0.430347 0.271494 0.063511 0.234649 0.114140 0.096442 0.593720 0.195697 0.152255 0.087732 0.677055 0.082958 0.005990 0.000813 0.090620 0.902576 0.949399 0.001844 0.035300 0.013457 0.984085 0.001863 0.006313 0.007739 0.007739 0.006313 0.001863 0.984085 0.013457 0.035300 0.001844 0.949399 0.902576 0.090620 0.000813 0.005990 0.189276 0.483269 0.048267 0.279188 0.195697 0.593720 0.096442 0.114140 0.128941 0.353560 0.089642 0.427857 0.072276 0.146680 0.197544 0.583501 Consensus sequence: DTHHGGTAATTAYCYT Alignment: DTHHGGTAATTAYCYT ---DBGTAAATAHD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 46 Motif name: TFW1 Original motif 0.000000 0.082495 0.917505 0.000000 0.074447 0.217304 0.197183 0.511066 0.000000 0.897384 0.102616 0.000000 0.050302 0.102616 0.847082 0.000000 0.000000 0.949698 0.050302 0.000000 0.000000 0.052314 0.947686 0.000000 Consensus sequence: GTCGCG Reserve complement motif 0.000000 0.947686 0.052314 0.000000 0.000000 0.050302 0.949698 0.000000 0.050302 0.847082 0.102616 0.000000 0.000000 0.102616 0.897384 0.000000 0.511066 0.217304 0.197183 0.074447 0.000000 0.917505 0.082495 0.000000 Consensus sequence: CGCGAC ************************************************************************ Best Matches for Motif ID 46 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_secondary Original Motif Original Motif Backward 9 6 0.000000 Species: Mus musculus Original motif 0.142646 0.070072 0.573757 0.213525 0.142215 0.493588 0.067040 0.297157 0.024280 0.923170 0.017567 0.034984 0.015569 0.033118 0.937202 0.014111 0.039447 0.888724 0.020074 0.051755 0.016404 0.008157 0.963367 0.012073 0.063620 0.860169 0.044753 0.031458 0.787911 0.122939 0.024389 0.064761 0.260517 0.103413 0.509585 0.126484 0.203752 0.216621 0.251506 0.328121 0.081075 0.040917 0.820854 0.057154 0.096434 0.760303 0.054942 0.088321 0.266016 0.190184 0.384583 0.159217 0.223960 0.243225 0.228688 0.304127 Consensus sequence: GYCGCGCARBGCVB Reverse complement motif 0.304127 0.243225 0.228688 0.223960 0.266016 0.384583 0.190184 0.159217 0.096434 0.054942 0.760303 0.088321 0.081075 0.820854 0.040917 0.057154 0.328121 0.216621 0.251506 0.203752 0.260517 0.509585 0.103413 0.126484 0.064761 0.122939 0.024389 0.787911 0.063620 0.044753 0.860169 0.031458 0.016404 0.963367 0.008157 0.012073 0.039447 0.020074 0.888724 0.051755 0.015569 0.937202 0.033118 0.014111 0.024280 0.017567 0.923170 0.034984 0.142215 0.067040 0.493588 0.297157 0.142646 0.573757 0.070072 0.213525 Consensus sequence: VVGCVMTGCGCGKC Alignment: GYCGCGCARBGCVB GTCGCG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Reverse Complement Original Motif Backward 3 6 0.008755 Species: Mus musculus Original motif 0.127991 0.202889 0.399822 0.269298 0.156940 0.244015 0.182364 0.416681 0.046494 0.050598 0.744311 0.158596 0.196142 0.365183 0.183389 0.255286 0.019306 0.946805 0.015210 0.018680 0.924839 0.022113 0.027620 0.025428 0.007478 0.672138 0.027789 0.292595 0.046702 0.026044 0.906146 0.021107 0.117335 0.610863 0.025132 0.246670 0.044431 0.053581 0.722748 0.179240 0.543713 0.149809 0.190030 0.116447 0.241148 0.722386 0.022547 0.013919 0.265412 0.113032 0.270602 0.350954 0.226186 0.143504 0.332746 0.297564 Consensus sequence: BBGHCACGCGACDD Reverse complement motif 0.226186 0.332746 0.143504 0.297564 0.350954 0.113032 0.270602 0.265412 0.241148 0.022547 0.722386 0.013919 0.116447 0.149809 0.190030 0.543713 0.044431 0.722748 0.053581 0.179240 0.117335 0.025132 0.610863 0.246670 0.046702 0.906146 0.026044 0.021107 0.007478 0.027789 0.672138 0.292595 0.025428 0.022113 0.027620 0.924839 0.019306 0.015210 0.946805 0.018680 0.196142 0.183389 0.365183 0.255286 0.046494 0.744311 0.050598 0.158596 0.416681 0.244015 0.182364 0.156940 0.127991 0.399822 0.202889 0.269298 Consensus sequence: HDGTCGCGTGDCVB Alignment: BBGHCACGCGACDD ------CGCGAC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_primary Reverse Complement Reverse Complement Backward 6 6 0.010295 Species: Mus musculus Original motif 0.358868 0.212371 0.263565 0.165196 0.303014 0.253580 0.111217 0.332189 0.420933 0.110957 0.210958 0.257152 0.769724 0.062662 0.032155 0.135459 0.311973 0.051319 0.408669 0.228039 0.097916 0.141153 0.719697 0.041234 0.009980 0.014044 0.971955 0.004021 0.014425 0.974798 0.008373 0.002404 0.000891 0.013228 0.983966 0.001915 0.000827 0.938560 0.059548 0.001065 0.007071 0.102005 0.872378 0.018546 0.020099 0.897653 0.014151 0.068097 0.114080 0.346724 0.409037 0.130159 0.331439 0.279041 0.085030 0.304491 0.319846 0.136792 0.043641 0.499722 Consensus sequence: VHDADGGCGCGCSHW Reverse complement motif 0.499722 0.136792 0.043641 0.319846 0.304491 0.279041 0.085030 0.331439 0.114080 0.409037 0.346724 0.130159 0.020099 0.014151 0.897653 0.068097 0.007071 0.872378 0.102005 0.018546 0.000827 0.059548 0.938560 0.001065 0.000891 0.983966 0.013228 0.001915 0.014425 0.008373 0.974798 0.002404 0.009980 0.971955 0.014044 0.004021 0.097916 0.719697 0.141153 0.041234 0.311973 0.408669 0.051319 0.228039 0.135459 0.062662 0.032155 0.769724 0.257152 0.110957 0.210958 0.420933 0.332189 0.253580 0.111217 0.303014 0.165196 0.212371 0.263565 0.358868 Consensus sequence: WHSGCGCGCCHTDHB Alignment: WHSGCGCGCCHTDHB ----CGCGAC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Reverse Complement Original Motif Backward 7 6 0.011961 Species: Mus musculus Original motif 0.456612 0.057181 0.078281 0.407926 0.460529 0.185506 0.083106 0.270859 0.445717 0.179510 0.239355 0.135417 0.116339 0.145186 0.275331 0.463144 0.239398 0.142078 0.480004 0.138520 0.355157 0.217877 0.284296 0.142670 0.318602 0.444835 0.153321 0.083243 0.609569 0.055866 0.280349 0.054216 0.062297 0.769824 0.027844 0.140035 0.151868 0.019245 0.803188 0.025699 0.011842 0.952534 0.017959 0.017665 0.017665 0.017959 0.952534 0.011842 0.025699 0.803188 0.019245 0.151868 0.140035 0.027844 0.769824 0.062297 0.054216 0.280349 0.055866 0.609569 0.013084 0.624655 0.177956 0.184305 0.287647 0.183527 0.295753 0.233074 0.042309 0.345931 0.198458 0.413301 0.338138 0.266033 0.045367 0.350462 0.302850 0.155320 0.074662 0.467168 0.240926 0.068901 0.283055 0.407118 0.409954 0.183157 0.154186 0.252704 Consensus sequence: WHVBVVMACGCGCGTCDYHWDH Reverse complement motif 0.252704 0.183157 0.154186 0.409954 0.407118 0.068901 0.283055 0.240926 0.467168 0.155320 0.074662 0.302850 0.350462 0.266033 0.045367 0.338138 0.413301 0.345931 0.198458 0.042309 0.287647 0.295753 0.183527 0.233074 0.013084 0.177956 0.624655 0.184305 0.609569 0.280349 0.055866 0.054216 0.140035 0.769824 0.027844 0.062297 0.025699 0.019245 0.803188 0.151868 0.017665 0.952534 0.017959 0.011842 0.011842 0.017959 0.952534 0.017665 0.151868 0.803188 0.019245 0.025699 0.062297 0.027844 0.769824 0.140035 0.054216 0.055866 0.280349 0.609569 0.318602 0.153321 0.444835 0.083243 0.142670 0.217877 0.284296 0.355157 0.239398 0.480004 0.142078 0.138520 0.463144 0.145186 0.275331 0.116339 0.135417 0.179510 0.239355 0.445717 0.270859 0.185506 0.083106 0.460529 0.407926 0.057181 0.078281 0.456612 Consensus sequence: HDWHMHGACGCGCGTRBVVBHW Alignment: WHVBVVMACGCGCGTCDYHWDH ----------CGCGAC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Reverse Complement Reverse Complement Forward 10 6 0.014366 Species: Mus musculus Original motif 0.298336 0.418632 0.208054 0.074978 0.289907 0.015608 0.457100 0.237385 0.273583 0.077889 0.107860 0.540668 0.184954 0.161611 0.384390 0.269045 0.521826 0.156340 0.089019 0.232815 0.356716 0.131104 0.394857 0.117323 0.266669 0.108765 0.505273 0.119293 0.020778 0.047199 0.919524 0.012500 0.948536 0.018775 0.008113 0.024576 0.010822 0.964042 0.014701 0.010434 0.007428 0.019505 0.966351 0.006717 0.010025 0.975678 0.008648 0.005649 0.043796 0.120935 0.742979 0.092289 0.008252 0.250704 0.541132 0.199913 0.474428 0.044681 0.134430 0.346461 0.146597 0.421317 0.143166 0.288920 0.020540 0.181479 0.553811 0.244170 0.129612 0.173360 0.535219 0.161808 0.506084 0.158156 0.130983 0.204776 0.054872 0.103043 0.545792 0.296293 0.389882 0.171037 0.164162 0.274918 0.225861 0.314031 0.288872 0.171237 Consensus sequence: VDWDARRGACGCGGWHGGAKHV Reverse complement motif 0.225861 0.288872 0.314031 0.171237 0.274918 0.171037 0.164162 0.389882 0.054872 0.545792 0.103043 0.296293 0.204776 0.158156 0.130983 0.506084 0.129612 0.535219 0.173360 0.161808 0.020540 0.553811 0.181479 0.244170 0.146597 0.143166 0.421317 0.288920 0.346461 0.044681 0.134430 0.474428 0.008252 0.541132 0.250704 0.199913 0.043796 0.742979 0.120935 0.092289 0.010025 0.008648 0.975678 0.005649 0.007428 0.966351 0.019505 0.006717 0.010822 0.014701 0.964042 0.010434 0.024576 0.018775 0.008113 0.948536 0.020778 0.919524 0.047199 0.012500 0.266669 0.505273 0.108765 0.119293 0.356716 0.394857 0.131104 0.117323 0.232815 0.156340 0.089019 0.521826 0.184954 0.384390 0.161611 0.269045 0.540668 0.077889 0.107860 0.273583 0.289907 0.457100 0.015608 0.237385 0.298336 0.208054 0.418632 0.074978 Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV Alignment: VHYTCCDWCCGCGTCMMTHWHV ---------CGCGAC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 47 Motif name: TFW2 Original motif 0.005831 0.364431 0.416910 0.212828 0.081633 0.816327 0.099125 0.002915 0.002915 0.067055 0.921283 0.008746 0.005831 0.883382 0.107872 0.002915 0.000000 0.096210 0.860058 0.043732 0.002915 0.906706 0.078717 0.011662 0.043732 0.075802 0.825073 0.055394 0.000000 0.125364 0.871720 0.002915 Consensus sequence: SCGCGCGG Reserve complement motif 0.000000 0.871720 0.125364 0.002915 0.043732 0.825073 0.075802 0.055394 0.002915 0.078717 0.906706 0.011662 0.000000 0.860058 0.096210 0.043732 0.005831 0.107872 0.883382 0.002915 0.002915 0.921283 0.067055 0.008746 0.081633 0.099125 0.816327 0.002915 0.005831 0.416910 0.364431 0.212828 Consensus sequence: CCGCGCGS ************************************************************************ Best Matches for Motif ID 47 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Reverse Complement Reverse Complement Backward 8 8 0.000000 Species: Mus musculus Original motif 0.456612 0.057181 0.078281 0.407926 0.460529 0.185506 0.083106 0.270859 0.445717 0.179510 0.239355 0.135417 0.116339 0.145186 0.275331 0.463144 0.239398 0.142078 0.480004 0.138520 0.355157 0.217877 0.284296 0.142670 0.318602 0.444835 0.153321 0.083243 0.609569 0.055866 0.280349 0.054216 0.062297 0.769824 0.027844 0.140035 0.151868 0.019245 0.803188 0.025699 0.011842 0.952534 0.017959 0.017665 0.017665 0.017959 0.952534 0.011842 0.025699 0.803188 0.019245 0.151868 0.140035 0.027844 0.769824 0.062297 0.054216 0.280349 0.055866 0.609569 0.013084 0.624655 0.177956 0.184305 0.287647 0.183527 0.295753 0.233074 0.042309 0.345931 0.198458 0.413301 0.338138 0.266033 0.045367 0.350462 0.302850 0.155320 0.074662 0.467168 0.240926 0.068901 0.283055 0.407118 0.409954 0.183157 0.154186 0.252704 Consensus sequence: WHVBVVMACGCGCGTCDYHWDH Reverse complement motif 0.252704 0.183157 0.154186 0.409954 0.407118 0.068901 0.283055 0.240926 0.467168 0.155320 0.074662 0.302850 0.350462 0.266033 0.045367 0.338138 0.413301 0.345931 0.198458 0.042309 0.287647 0.295753 0.183527 0.233074 0.013084 0.177956 0.624655 0.184305 0.609569 0.280349 0.055866 0.054216 0.140035 0.769824 0.027844 0.062297 0.025699 0.019245 0.803188 0.151868 0.017665 0.952534 0.017959 0.011842 0.011842 0.017959 0.952534 0.017665 0.151868 0.803188 0.019245 0.025699 0.062297 0.027844 0.769824 0.140035 0.054216 0.055866 0.280349 0.609569 0.318602 0.153321 0.444835 0.083243 0.142670 0.217877 0.284296 0.355157 0.239398 0.480004 0.142078 0.138520 0.463144 0.145186 0.275331 0.116339 0.135417 0.179510 0.239355 0.445717 0.270859 0.185506 0.083106 0.460529 0.407926 0.057181 0.078281 0.456612 Consensus sequence: HDWHMHGACGCGCGTRBVVBHW Alignment: HDWHMHGACGCGCGTRBVVBHW -------CCGCGCGS------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_secondary Reverse Complement Reverse Complement Backward 2 8 0.002284 Species: Mus musculus Original motif 0.142646 0.070072 0.573757 0.213525 0.142215 0.493588 0.067040 0.297157 0.024280 0.923170 0.017567 0.034984 0.015569 0.033118 0.937202 0.014111 0.039447 0.888724 0.020074 0.051755 0.016404 0.008157 0.963367 0.012073 0.063620 0.860169 0.044753 0.031458 0.787911 0.122939 0.024389 0.064761 0.260517 0.103413 0.509585 0.126484 0.203752 0.216621 0.251506 0.328121 0.081075 0.040917 0.820854 0.057154 0.096434 0.760303 0.054942 0.088321 0.266016 0.190184 0.384583 0.159217 0.223960 0.243225 0.228688 0.304127 Consensus sequence: GYCGCGCARBGCVB Reverse complement motif 0.304127 0.243225 0.228688 0.223960 0.266016 0.384583 0.190184 0.159217 0.096434 0.054942 0.760303 0.088321 0.081075 0.820854 0.040917 0.057154 0.328121 0.216621 0.251506 0.203752 0.260517 0.509585 0.103413 0.126484 0.064761 0.122939 0.024389 0.787911 0.063620 0.044753 0.860169 0.031458 0.016404 0.963367 0.008157 0.012073 0.039447 0.020074 0.888724 0.051755 0.015569 0.937202 0.033118 0.014111 0.024280 0.017567 0.923170 0.034984 0.142215 0.067040 0.493588 0.297157 0.142646 0.573757 0.070072 0.213525 Consensus sequence: VVGCVMTGCGCGKC Alignment: VVGCVMTGCGCGKC -----CCGCGCGS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_primary Reverse Complement Reverse Complement Backward 7 8 0.003379 Species: Mus musculus Original motif 0.358868 0.212371 0.263565 0.165196 0.303014 0.253580 0.111217 0.332189 0.420933 0.110957 0.210958 0.257152 0.769724 0.062662 0.032155 0.135459 0.311973 0.051319 0.408669 0.228039 0.097916 0.141153 0.719697 0.041234 0.009980 0.014044 0.971955 0.004021 0.014425 0.974798 0.008373 0.002404 0.000891 0.013228 0.983966 0.001915 0.000827 0.938560 0.059548 0.001065 0.007071 0.102005 0.872378 0.018546 0.020099 0.897653 0.014151 0.068097 0.114080 0.346724 0.409037 0.130159 0.331439 0.279041 0.085030 0.304491 0.319846 0.136792 0.043641 0.499722 Consensus sequence: VHDADGGCGCGCSHW Reverse complement motif 0.499722 0.136792 0.043641 0.319846 0.304491 0.279041 0.085030 0.331439 0.114080 0.409037 0.346724 0.130159 0.020099 0.014151 0.897653 0.068097 0.007071 0.872378 0.102005 0.018546 0.000827 0.059548 0.938560 0.001065 0.000891 0.983966 0.013228 0.001915 0.014425 0.008373 0.974798 0.002404 0.009980 0.971955 0.014044 0.004021 0.097916 0.719697 0.141153 0.041234 0.311973 0.408669 0.051319 0.228039 0.135459 0.062662 0.032155 0.769724 0.257152 0.110957 0.210958 0.420933 0.332189 0.253580 0.111217 0.303014 0.165196 0.212371 0.263565 0.358868 Consensus sequence: WHSGCGCGCCHTDHB Alignment: WHSGCGCGCCHTDHB -CCGCGCGS------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00001 E2F2_primary Reverse Complement Reverse Complement Backward 7 8 0.003999 Species: Mus musculus Original motif 0.305970 0.214348 0.269312 0.210370 0.279551 0.218276 0.140576 0.361597 0.391304 0.162239 0.193916 0.252541 0.701667 0.102206 0.041580 0.154547 0.427655 0.068368 0.324706 0.179271 0.144368 0.191048 0.609772 0.054812 0.014295 0.020613 0.958397 0.006695 0.019783 0.962982 0.013403 0.003831 0.001189 0.023882 0.973231 0.001697 0.001343 0.919840 0.077728 0.001089 0.011293 0.097945 0.865194 0.025568 0.039106 0.864604 0.025189 0.071100 0.147663 0.328105 0.407118 0.117115 0.462769 0.203531 0.107986 0.225714 0.293396 0.229650 0.082819 0.394135 Consensus sequence: VHDARGGCGCGCVHH Reverse complement motif 0.394135 0.229650 0.082819 0.293396 0.225714 0.203531 0.107986 0.462769 0.147663 0.407118 0.328105 0.117115 0.039106 0.025189 0.864604 0.071100 0.011293 0.865194 0.097945 0.025568 0.001343 0.077728 0.919840 0.001089 0.001189 0.973231 0.023882 0.001697 0.019783 0.013403 0.962982 0.003831 0.014295 0.958397 0.020613 0.006695 0.144368 0.609772 0.191048 0.054812 0.179271 0.068368 0.324706 0.427655 0.154547 0.102206 0.041580 0.701667 0.252541 0.162239 0.193916 0.391304 0.361597 0.218276 0.140576 0.279551 0.210370 0.214348 0.269312 0.305970 Consensus sequence: HHVGCGCGCCKTDHB Alignment: HHVGCGCGCCKTDHB -CCGCGCGS------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_primary Reverse Complement Original Motif Backward 5 8 0.004845 Species: Mus musculus Original motif 0.142624 0.111294 0.283688 0.462394 0.221170 0.081404 0.499138 0.198288 0.290070 0.042114 0.604904 0.062912 0.109755 0.559510 0.215454 0.115281 0.111745 0.022727 0.850580 0.014948 0.015907 0.942291 0.005561 0.036241 0.088509 0.003729 0.902805 0.004957 0.004957 0.902805 0.003729 0.088509 0.036241 0.005561 0.942291 0.015907 0.014948 0.850580 0.022727 0.111745 0.325358 0.049424 0.519652 0.105566 0.062912 0.604904 0.042114 0.290070 0.214335 0.388248 0.125912 0.271505 0.128984 0.372787 0.092390 0.405839 0.269058 0.098422 0.484016 0.148504 0.362176 0.156050 0.188642 0.293132 Consensus sequence: DDGCGCGCGCRCHYRD Reverse complement motif 0.293132 0.156050 0.188642 0.362176 0.269058 0.484016 0.098422 0.148504 0.405839 0.372787 0.092390 0.128984 0.214335 0.125912 0.388248 0.271505 0.062912 0.042114 0.604904 0.290070 0.325358 0.519652 0.049424 0.105566 0.014948 0.022727 0.850580 0.111745 0.036241 0.942291 0.005561 0.015907 0.004957 0.003729 0.902805 0.088509 0.088509 0.902805 0.003729 0.004957 0.015907 0.005561 0.942291 0.036241 0.111745 0.850580 0.022727 0.014948 0.109755 0.215454 0.559510 0.115281 0.290070 0.604904 0.042114 0.062912 0.221170 0.499138 0.081404 0.198288 0.462394 0.111294 0.283688 0.142624 Consensus sequence: DMMDGMGCGCGCGCHD Alignment: DDGCGCGCGCRCHYRD ----CCGCGCGS---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 48 Motif name: TFW3 Original motif 0.020000 0.920000 0.050000 0.010000 0.000000 0.030000 0.960000 0.010000 0.000000 0.170000 0.830000 0.000000 0.000000 0.990000 0.000000 0.010000 0.000000 0.270000 0.210000 0.520000 0.030000 0.300000 0.370000 0.300000 0.000000 0.950000 0.050000 0.000000 0.020000 0.130000 0.800000 0.050000 0.000000 0.880000 0.120000 0.000000 0.010000 0.220000 0.760000 0.010000 Consensus sequence: CGGCYBCGCG Reserve complement motif 0.010000 0.760000 0.220000 0.010000 0.000000 0.120000 0.880000 0.000000 0.020000 0.800000 0.130000 0.050000 0.000000 0.050000 0.950000 0.000000 0.030000 0.370000 0.300000 0.300000 0.520000 0.270000 0.210000 0.000000 0.000000 0.000000 0.990000 0.010000 0.000000 0.830000 0.170000 0.000000 0.000000 0.960000 0.030000 0.010000 0.020000 0.050000 0.920000 0.010000 Consensus sequence: CGCGBMGCCG ************************************************************************ Best Matches for Motif ID 48 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Reverse Complement Forward 7 10 0.033186 Species: Mus musculus Original motif 0.104824 0.412716 0.254506 0.227955 0.644922 0.065476 0.140479 0.149122 0.201205 0.166164 0.347131 0.285501 0.360606 0.256316 0.150766 0.232313 0.199831 0.240681 0.279350 0.280137 0.234308 0.204076 0.321306 0.240310 0.274112 0.462435 0.111425 0.152028 0.067070 0.717501 0.073934 0.141496 0.106745 0.084442 0.658566 0.150247 0.025128 0.967053 0.003585 0.004234 0.006412 0.982989 0.003227 0.007371 0.009588 0.877620 0.002571 0.110221 0.621521 0.355443 0.015669 0.007366 0.002600 0.980275 0.004191 0.012934 0.118773 0.026658 0.783843 0.070725 0.022358 0.822101 0.024684 0.130857 0.713212 0.080912 0.128793 0.077084 0.166568 0.250955 0.107934 0.474544 0.225040 0.222494 0.163301 0.389166 0.268976 0.223206 0.265314 0.242504 0.137052 0.229058 0.148439 0.485451 0.135819 0.304550 0.141994 0.417637 0.272440 0.319501 0.230580 0.177478 Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Reverse complement motif 0.272440 0.230580 0.319501 0.177478 0.417637 0.304550 0.141994 0.135819 0.485451 0.229058 0.148439 0.137052 0.242504 0.223206 0.265314 0.268976 0.389166 0.222494 0.163301 0.225040 0.474544 0.250955 0.107934 0.166568 0.077084 0.080912 0.128793 0.713212 0.022358 0.024684 0.822101 0.130857 0.118773 0.783843 0.026658 0.070725 0.002600 0.004191 0.980275 0.012934 0.007366 0.355443 0.015669 0.621521 0.009588 0.002571 0.877620 0.110221 0.006412 0.003227 0.982989 0.007371 0.025128 0.003585 0.967053 0.004234 0.106745 0.658566 0.084442 0.150247 0.067070 0.073934 0.717501 0.141496 0.274112 0.111425 0.462435 0.152028 0.234308 0.321306 0.204076 0.240310 0.280137 0.240681 0.279350 0.199831 0.232313 0.256316 0.150766 0.360606 0.201205 0.347131 0.166164 0.285501 0.149122 0.065476 0.140479 0.644922 0.104824 0.254506 0.412716 0.227955 Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB ------CGCGBMGCCG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Original Motif Original Motif Backward 3 10 0.034211 Species: Mus musculus Original motif 0.211547 0.282708 0.203472 0.302273 0.141988 0.722437 0.054854 0.080721 0.032605 0.877172 0.012432 0.077792 0.115126 0.070606 0.781290 0.032979 0.003516 0.990021 0.002265 0.004198 0.004715 0.982482 0.009897 0.002906 0.001627 0.975937 0.001662 0.020774 0.262352 0.731732 0.002730 0.003187 0.005890 0.985756 0.002081 0.006273 0.022893 0.090460 0.649322 0.237324 0.023038 0.859949 0.037913 0.079101 0.567633 0.057394 0.166792 0.208181 0.176597 0.331265 0.125308 0.366830 0.183049 0.183774 0.226793 0.406384 Consensus sequence: HCCGCCCCCGCAHB Reverse complement motif 0.406384 0.183774 0.226793 0.183049 0.366830 0.331265 0.125308 0.176597 0.208181 0.057394 0.166792 0.567633 0.023038 0.037913 0.859949 0.079101 0.022893 0.649322 0.090460 0.237324 0.005890 0.002081 0.985756 0.006273 0.262352 0.002730 0.731732 0.003187 0.001627 0.001662 0.975937 0.020774 0.004715 0.009897 0.982482 0.002906 0.003516 0.002265 0.990021 0.004198 0.115126 0.781290 0.070606 0.032979 0.032605 0.012432 0.877172 0.077792 0.141988 0.054854 0.722437 0.080721 0.302273 0.282708 0.203472 0.211547 Consensus sequence: VHTGCGGGGGCGGH Alignment: HCCGCCCCCGCAHB --CGGCYBCGCG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_primary Original Motif Original Motif Forward 12 10 0.035655 Species: Mus musculus Original motif 0.397468 0.109792 0.196359 0.296381 0.102928 0.480888 0.250249 0.165936 0.141925 0.173586 0.377365 0.307124 0.337385 0.368225 0.188518 0.105872 0.354789 0.067393 0.345343 0.232475 0.299392 0.109745 0.215552 0.375311 0.242937 0.170264 0.189245 0.397554 0.461680 0.013180 0.358677 0.166463 0.067089 0.063048 0.008045 0.861819 0.431756 0.128671 0.436022 0.003551 0.006559 0.001814 0.988272 0.003355 0.012929 0.983600 0.001468 0.002003 0.018768 0.000766 0.976433 0.004033 0.003776 0.005554 0.002991 0.987679 0.002737 0.981589 0.009028 0.006646 0.126509 0.273800 0.413161 0.186530 0.100613 0.337225 0.212034 0.350128 0.123741 0.284683 0.060914 0.530661 0.204454 0.143533 0.100462 0.551551 0.202290 0.482197 0.148368 0.167145 0.191625 0.101330 0.607860 0.099185 0.507546 0.086532 0.219554 0.186368 Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA Reverse complement motif 0.186368 0.086532 0.219554 0.507546 0.191625 0.607860 0.101330 0.099185 0.202290 0.148368 0.482197 0.167145 0.551551 0.143533 0.100462 0.204454 0.530661 0.284683 0.060914 0.123741 0.350128 0.337225 0.212034 0.100613 0.126509 0.413161 0.273800 0.186530 0.002737 0.009028 0.981589 0.006646 0.987679 0.005554 0.002991 0.003776 0.018768 0.976433 0.000766 0.004033 0.012929 0.001468 0.983600 0.002003 0.006559 0.988272 0.001814 0.003355 0.431756 0.436022 0.128671 0.003551 0.861819 0.063048 0.008045 0.067089 0.166463 0.013180 0.358677 0.461680 0.397554 0.170264 0.189245 0.242937 0.375311 0.109745 0.215552 0.299392 0.232475 0.067393 0.345343 0.354789 0.337385 0.188518 0.368225 0.105872 0.141925 0.377365 0.173586 0.307124 0.102928 0.250249 0.480888 0.165936 0.296381 0.109792 0.196359 0.397468 Consensus sequence: TCDAMVBGACGCMAKDDDVBBD Alignment: DBBVDDDRTRGCGTCBBYTHGA -----------CGGCYBCGCG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Reverse Complement Reverse Complement Forward 11 10 0.041792 Species: Mus musculus Original motif 0.456612 0.057181 0.078281 0.407926 0.460529 0.185506 0.083106 0.270859 0.445717 0.179510 0.239355 0.135417 0.116339 0.145186 0.275331 0.463144 0.239398 0.142078 0.480004 0.138520 0.355157 0.217877 0.284296 0.142670 0.318602 0.444835 0.153321 0.083243 0.609569 0.055866 0.280349 0.054216 0.062297 0.769824 0.027844 0.140035 0.151868 0.019245 0.803188 0.025699 0.011842 0.952534 0.017959 0.017665 0.017665 0.017959 0.952534 0.011842 0.025699 0.803188 0.019245 0.151868 0.140035 0.027844 0.769824 0.062297 0.054216 0.280349 0.055866 0.609569 0.013084 0.624655 0.177956 0.184305 0.287647 0.183527 0.295753 0.233074 0.042309 0.345931 0.198458 0.413301 0.338138 0.266033 0.045367 0.350462 0.302850 0.155320 0.074662 0.467168 0.240926 0.068901 0.283055 0.407118 0.409954 0.183157 0.154186 0.252704 Consensus sequence: WHVBVVMACGCGCGTCDYHWDH Reverse complement motif 0.252704 0.183157 0.154186 0.409954 0.407118 0.068901 0.283055 0.240926 0.467168 0.155320 0.074662 0.302850 0.350462 0.266033 0.045367 0.338138 0.413301 0.345931 0.198458 0.042309 0.287647 0.295753 0.183527 0.233074 0.013084 0.177956 0.624655 0.184305 0.609569 0.280349 0.055866 0.054216 0.140035 0.769824 0.027844 0.062297 0.025699 0.019245 0.803188 0.151868 0.017665 0.952534 0.017959 0.011842 0.011842 0.017959 0.952534 0.017665 0.151868 0.803188 0.019245 0.025699 0.062297 0.027844 0.769824 0.140035 0.054216 0.055866 0.280349 0.609569 0.318602 0.153321 0.444835 0.083243 0.142670 0.217877 0.284296 0.355157 0.239398 0.480004 0.142078 0.138520 0.463144 0.145186 0.275331 0.116339 0.135417 0.179510 0.239355 0.445717 0.270859 0.185506 0.083106 0.460529 0.407926 0.057181 0.078281 0.456612 Consensus sequence: HDWHMHGACGCGCGTRBVVBHW Alignment: HDWHMHGACGCGCGTRBVVBHW ----------CGCGBMGCCG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_primary Reverse Complement Original Motif Backward 2 10 0.041904 Species: Mus musculus Original motif 0.142624 0.111294 0.283688 0.462394 0.221170 0.081404 0.499138 0.198288 0.290070 0.042114 0.604904 0.062912 0.109755 0.559510 0.215454 0.115281 0.111745 0.022727 0.850580 0.014948 0.015907 0.942291 0.005561 0.036241 0.088509 0.003729 0.902805 0.004957 0.004957 0.902805 0.003729 0.088509 0.036241 0.005561 0.942291 0.015907 0.014948 0.850580 0.022727 0.111745 0.325358 0.049424 0.519652 0.105566 0.062912 0.604904 0.042114 0.290070 0.214335 0.388248 0.125912 0.271505 0.128984 0.372787 0.092390 0.405839 0.269058 0.098422 0.484016 0.148504 0.362176 0.156050 0.188642 0.293132 Consensus sequence: DDGCGCGCGCRCHYRD Reverse complement motif 0.293132 0.156050 0.188642 0.362176 0.269058 0.484016 0.098422 0.148504 0.405839 0.372787 0.092390 0.128984 0.214335 0.125912 0.388248 0.271505 0.062912 0.042114 0.604904 0.290070 0.325358 0.519652 0.049424 0.105566 0.014948 0.022727 0.850580 0.111745 0.036241 0.942291 0.005561 0.015907 0.004957 0.003729 0.902805 0.088509 0.088509 0.902805 0.003729 0.004957 0.015907 0.005561 0.942291 0.036241 0.111745 0.850580 0.022727 0.014948 0.109755 0.215454 0.559510 0.115281 0.290070 0.604904 0.042114 0.062912 0.221170 0.499138 0.081404 0.198288 0.462394 0.111294 0.283688 0.142624 Consensus sequence: DMMDGMGCGCGCGCHD Alignment: DDGCGCGCGCRCHYRD -----CGCGBMGCCG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 49 Motif name: TFF1 Original motif 0.180952 0.533333 0.142857 0.142857 0.019048 0.009524 0.952381 0.019048 0.019048 0.047619 0.914286 0.019048 0.400000 0.333333 0.219048 0.047619 0.028571 0.047619 0.885714 0.038095 0.038095 0.895238 0.009524 0.057143 0.133333 0.733333 0.066667 0.066667 0.038095 0.038095 0.876190 0.047619 0.123810 0.752381 0.114286 0.009524 0.314286 0.190476 0.390476 0.104762 0.123810 0.028571 0.771429 0.076190 0.057143 0.904762 0.028571 0.009524 Consensus sequence: CGGVGCCGCVGC Reserve complement motif 0.057143 0.028571 0.904762 0.009524 0.123810 0.771429 0.028571 0.076190 0.314286 0.390476 0.190476 0.104762 0.123810 0.114286 0.752381 0.009524 0.038095 0.876190 0.038095 0.047619 0.133333 0.066667 0.733333 0.066667 0.038095 0.009524 0.895238 0.057143 0.028571 0.885714 0.047619 0.038095 0.047619 0.333333 0.219048 0.400000 0.019048 0.914286 0.047619 0.019048 0.019048 0.952381 0.009524 0.019048 0.180952 0.142857 0.533333 0.142857 Consensus sequence: GCVGCGGCBCCG ************************************************************************ Best Matches for Motif ID 49 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_secondary Original Motif Original Motif Backward 2 12 0.042359 Species: Mus musculus Original motif 0.265095 0.268267 0.222997 0.243641 0.200676 0.255224 0.341788 0.202312 0.178293 0.362068 0.104617 0.355022 0.351308 0.049870 0.101991 0.496832 0.114543 0.445994 0.008584 0.430879 0.113589 0.020854 0.846807 0.018750 0.004661 0.132010 0.859240 0.004088 0.030896 0.962007 0.004017 0.003080 0.006194 0.002090 0.965564 0.026152 0.008009 0.911831 0.077009 0.003151 0.029519 0.830096 0.011333 0.129053 0.764710 0.016406 0.088627 0.130257 0.530327 0.265186 0.100721 0.103765 0.331689 0.153148 0.308482 0.206682 0.332536 0.311591 0.232118 0.123755 0.175189 0.233372 0.375563 0.215876 0.183884 0.334856 0.283993 0.197267 Consensus sequence: HBHWYGGCGCCAMDVBB Reverse complement motif 0.183884 0.283993 0.334856 0.197267 0.175189 0.375563 0.233372 0.215876 0.123755 0.311591 0.232118 0.332536 0.206682 0.153148 0.308482 0.331689 0.103765 0.265186 0.100721 0.530327 0.130257 0.016406 0.088627 0.764710 0.029519 0.011333 0.830096 0.129053 0.008009 0.077009 0.911831 0.003151 0.006194 0.965564 0.002090 0.026152 0.030896 0.004017 0.962007 0.003080 0.004661 0.859240 0.132010 0.004088 0.113589 0.846807 0.020854 0.018750 0.114543 0.008584 0.445994 0.430879 0.496832 0.049870 0.101991 0.351308 0.178293 0.104617 0.362068 0.355022 0.200676 0.341788 0.255224 0.202312 0.265095 0.222997 0.268267 0.243641 Consensus sequence: BBBDYTGGCGCCKWDBD Alignment: HBHWYGGCGCCAMDVBB ----CGGVGCCGCVGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00001 E2F2_secondary Original Motif Original Motif Forward 5 12 0.046515 Species: Mus musculus Original motif 0.270440 0.280855 0.182254 0.266451 0.232294 0.286577 0.287022 0.194107 0.182719 0.289524 0.187726 0.340031 0.321668 0.055383 0.129604 0.493345 0.105971 0.476989 0.007580 0.409460 0.150172 0.013701 0.803513 0.032614 0.004559 0.194378 0.794741 0.006322 0.047843 0.942269 0.005918 0.003970 0.010089 0.002584 0.946109 0.041218 0.012276 0.865373 0.117935 0.004415 0.045912 0.779220 0.006935 0.167933 0.781965 0.011623 0.113119 0.093293 0.612968 0.172164 0.096061 0.118806 0.357204 0.206997 0.222456 0.213343 0.292059 0.261101 0.279674 0.167166 0.164667 0.173227 0.371882 0.290223 0.157765 0.278892 0.333119 0.230224 Consensus sequence: HVBWYGGCGCCAADVBB Reverse complement motif 0.157765 0.333119 0.278892 0.230224 0.164667 0.371882 0.173227 0.290223 0.167166 0.261101 0.279674 0.292059 0.213343 0.206997 0.222456 0.357204 0.118806 0.172164 0.096061 0.612968 0.093293 0.011623 0.113119 0.781965 0.045912 0.006935 0.779220 0.167933 0.012276 0.117935 0.865373 0.004415 0.010089 0.946109 0.002584 0.041218 0.047843 0.005918 0.942269 0.003970 0.004559 0.794741 0.194378 0.006322 0.150172 0.803513 0.013701 0.032614 0.105971 0.007580 0.476989 0.409460 0.493345 0.055383 0.129604 0.321668 0.340031 0.289524 0.187726 0.182719 0.232294 0.287022 0.286577 0.194107 0.270440 0.182254 0.280855 0.266451 Consensus sequence: BBBDTTGGCGCCKWVVD Alignment: HVBWYGGCGCCAADVBB ----CGGVGCCGCVGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00088 Plagl1_primary Reverse Complement Original Motif Forward 1 12 0.047270 Species: Mus musculus Original motif 0.119709 0.241933 0.299696 0.338662 0.236295 0.277376 0.191945 0.294383 0.203722 0.152043 0.467305 0.176931 0.187661 0.114330 0.513662 0.184347 0.047306 0.041411 0.838415 0.072868 0.131945 0.003749 0.848921 0.015385 0.003800 0.006713 0.960656 0.028832 0.002515 0.652482 0.343047 0.001955 0.001955 0.343047 0.652482 0.002515 0.028832 0.960656 0.006713 0.003800 0.015385 0.848921 0.003749 0.131945 0.072868 0.838415 0.041411 0.047306 0.193804 0.543600 0.063385 0.199211 0.210649 0.233823 0.258755 0.296773 0.376439 0.191612 0.261004 0.170945 0.230078 0.256519 0.299785 0.213618 Consensus sequence: BHDGGGGSSCCCCBVV Reverse complement motif 0.230078 0.299785 0.256519 0.213618 0.170945 0.191612 0.261004 0.376439 0.296773 0.233823 0.258755 0.210649 0.193804 0.063385 0.543600 0.199211 0.072868 0.041411 0.838415 0.047306 0.015385 0.003749 0.848921 0.131945 0.028832 0.006713 0.960656 0.003800 0.001955 0.652482 0.343047 0.002515 0.002515 0.343047 0.652482 0.001955 0.003800 0.960656 0.006713 0.028832 0.131945 0.848921 0.003749 0.015385 0.047306 0.838415 0.041411 0.072868 0.187661 0.513662 0.114330 0.184347 0.203722 0.467305 0.152043 0.176931 0.294383 0.277376 0.191945 0.236295 0.338662 0.241933 0.299696 0.119709 Consensus sequence: VBVGGGGSSCCCCHHV Alignment: VBVGGGGSSCCCCHHV GCVGCGGCBCCG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_primary Reverse Complement Original Motif Forward 5 12 0.047691 Species: Mus musculus Original motif 0.168852 0.325948 0.188604 0.316596 0.150343 0.193286 0.241301 0.415069 0.091518 0.482905 0.122928 0.302648 0.472493 0.198776 0.225796 0.102935 0.294513 0.179919 0.447250 0.078318 0.014660 0.972080 0.005591 0.007668 0.954848 0.008107 0.008474 0.028571 0.006076 0.178912 0.760021 0.054991 0.052082 0.817415 0.124797 0.005707 0.019342 0.010406 0.008905 0.961347 0.005455 0.008073 0.977684 0.008788 0.042946 0.715551 0.087020 0.154483 0.116888 0.241739 0.170073 0.471300 0.315931 0.324343 0.291451 0.068274 0.199164 0.366921 0.163690 0.270226 0.218561 0.211076 0.187732 0.382631 0.145317 0.139808 0.389262 0.325614 Consensus sequence: BBYVVCAGCTGCBVHHD Reverse complement motif 0.145317 0.389262 0.139808 0.325614 0.382631 0.211076 0.187732 0.218561 0.199164 0.163690 0.366921 0.270226 0.315931 0.291451 0.324343 0.068274 0.471300 0.241739 0.170073 0.116888 0.042946 0.087020 0.715551 0.154483 0.005455 0.977684 0.008073 0.008788 0.961347 0.010406 0.008905 0.019342 0.052082 0.124797 0.817415 0.005707 0.006076 0.760021 0.178912 0.054991 0.028571 0.008107 0.008474 0.954848 0.014660 0.005591 0.972080 0.007668 0.294513 0.447250 0.179919 0.078318 0.102935 0.198776 0.225796 0.472493 0.091518 0.122928 0.482905 0.302648 0.415069 0.193286 0.241301 0.150343 0.168852 0.188604 0.325948 0.316596 Consensus sequence: HHDVVGCAGCTGVBKVB Alignment: BBYVVCAGCTGCBVHHD ----GCVGCGGCBCCG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_secondary Reverse Complement Original Motif Backward 5 12 0.050818 Species: Mus musculus Original motif 0.316572 0.278382 0.152556 0.252490 0.167141 0.257034 0.259894 0.315931 0.175523 0.325956 0.259996 0.238525 0.165052 0.385677 0.239449 0.209822 0.069489 0.782718 0.072454 0.075339 0.049943 0.800636 0.031988 0.117433 0.223382 0.060306 0.552691 0.163621 0.072944 0.818252 0.034406 0.074398 0.070535 0.845127 0.062712 0.021626 0.031035 0.859354 0.055424 0.054187 0.063668 0.798503 0.067274 0.070554 0.348488 0.030697 0.197179 0.423636 0.307220 0.256470 0.181009 0.255301 0.460933 0.285057 0.090258 0.163752 0.315798 0.228431 0.171135 0.284637 0.374527 0.268328 0.198810 0.158335 Consensus sequence: HBBBCCGCCCCWHHHV Reverse complement motif 0.158335 0.268328 0.198810 0.374527 0.284637 0.228431 0.171135 0.315798 0.163752 0.285057 0.090258 0.460933 0.255301 0.256470 0.181009 0.307220 0.423636 0.030697 0.197179 0.348488 0.063668 0.067274 0.798503 0.070554 0.031035 0.055424 0.859354 0.054187 0.070535 0.062712 0.845127 0.021626 0.072944 0.034406 0.818252 0.074398 0.223382 0.552691 0.060306 0.163621 0.049943 0.031988 0.800636 0.117433 0.069489 0.072454 0.782718 0.075339 0.165052 0.239449 0.385677 0.209822 0.175523 0.259996 0.325956 0.238525 0.315931 0.257034 0.259894 0.167141 0.252490 0.278382 0.152556 0.316572 Consensus sequence: BHHHWGGGGCGGBBVH Alignment: HBBBCCGCCCCWHHHV GCVGCGGCBCCG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 50 Motif name: TFF11 Original motif 0.076190 0.085714 0.819048 0.019048 0.076190 0.066667 0.780952 0.076190 0.438095 0.323810 0.180952 0.057143 0.123810 0.180952 0.657143 0.038095 0.095238 0.076190 0.790476 0.038095 0.371429 0.104762 0.485714 0.038095 0.019048 0.038095 0.914286 0.028571 0.019048 0.095238 0.885714 0.000000 0.057143 0.866667 0.066667 0.009524 0.009524 0.009524 0.980952 0.000000 0.047619 0.104762 0.838095 0.009524 0.333333 0.161905 0.409524 0.095238 0.019048 0.009524 0.952381 0.019048 0.114286 0.580952 0.266667 0.038095 Consensus sequence: GGMGGRGGCGGVGC Reserve complement motif 0.114286 0.266667 0.580952 0.038095 0.019048 0.952381 0.009524 0.019048 0.333333 0.409524 0.161905 0.095238 0.047619 0.838095 0.104762 0.009524 0.009524 0.980952 0.009524 0.000000 0.057143 0.066667 0.866667 0.009524 0.019048 0.885714 0.095238 0.000000 0.019048 0.914286 0.038095 0.028571 0.371429 0.485714 0.104762 0.038095 0.095238 0.790476 0.076190 0.038095 0.123810 0.657143 0.180952 0.038095 0.057143 0.323810 0.180952 0.438095 0.076190 0.780952 0.066667 0.076190 0.076190 0.819048 0.085714 0.019048 Consensus sequence: GCVCCGCCMCCYCC ************************************************************************ Best Matches for Motif ID 50 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Reverse Complement Original Motif Backward 1 14 0.029432 Species: Mus musculus Original motif 0.150668 0.131779 0.245665 0.471887 0.316817 0.287314 0.150829 0.245040 0.256473 0.409066 0.109700 0.224761 0.210646 0.220222 0.345010 0.224122 0.166679 0.508939 0.081676 0.242705 0.049351 0.759380 0.088489 0.102780 0.047598 0.785546 0.121957 0.044898 0.004606 0.944933 0.034696 0.015764 0.040252 0.050652 0.890382 0.018713 0.003038 0.913699 0.022449 0.060814 0.028672 0.941477 0.012276 0.017575 0.635243 0.139731 0.110495 0.114531 0.240016 0.385948 0.182848 0.191188 0.210430 0.274127 0.085171 0.430272 0.088118 0.454598 0.208989 0.248295 0.181269 0.265028 0.149023 0.404680 0.101070 0.252682 0.368542 0.277706 Consensus sequence: DHHBCCCCGCCAHHBHB Reverse complement motif 0.101070 0.368542 0.252682 0.277706 0.404680 0.265028 0.149023 0.181269 0.088118 0.208989 0.454598 0.248295 0.430272 0.274127 0.085171 0.210430 0.240016 0.182848 0.385948 0.191188 0.114531 0.139731 0.110495 0.635243 0.028672 0.012276 0.941477 0.017575 0.003038 0.022449 0.913699 0.060814 0.040252 0.890382 0.050652 0.018713 0.004606 0.034696 0.944933 0.015764 0.047598 0.121957 0.785546 0.044898 0.049351 0.088489 0.759380 0.102780 0.166679 0.081676 0.508939 0.242705 0.210646 0.345010 0.220222 0.224122 0.256473 0.109700 0.409066 0.224761 0.245040 0.287314 0.150829 0.316817 0.471887 0.131779 0.245665 0.150668 Consensus sequence: BHBHDTGGCGGGGBDHD Alignment: DHHBCCCCGCCAHHBHB ---GCVCCGCCMCCYCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Reverse Complement Original Motif Forward 2 14 0.030856 Species: Mus musculus Original motif 0.155386 0.223380 0.374454 0.246780 0.247106 0.159582 0.345111 0.248201 0.238889 0.258354 0.165304 0.337454 0.255612 0.489586 0.051621 0.203182 0.450100 0.545383 0.001071 0.003447 0.003704 0.991007 0.002456 0.002833 0.035504 0.001814 0.928129 0.034553 0.001494 0.991406 0.003414 0.003686 0.003045 0.990628 0.005182 0.001145 0.000990 0.963237 0.001215 0.034557 0.148016 0.838396 0.000666 0.012922 0.014261 0.905847 0.007200 0.072692 0.083394 0.270068 0.058368 0.588170 0.149141 0.286783 0.142802 0.421274 0.204851 0.347195 0.253356 0.194597 0.184442 0.299908 0.194408 0.321242 0.125793 0.380109 0.245318 0.248780 Consensus sequence: BDHHMCGCCCCCTHVBB Reverse complement motif 0.125793 0.245318 0.380109 0.248780 0.321242 0.299908 0.194408 0.184442 0.204851 0.253356 0.347195 0.194597 0.421274 0.286783 0.142802 0.149141 0.588170 0.270068 0.058368 0.083394 0.014261 0.007200 0.905847 0.072692 0.148016 0.000666 0.838396 0.012922 0.000990 0.001215 0.963237 0.034557 0.003045 0.005182 0.990628 0.001145 0.001494 0.003414 0.991406 0.003686 0.035504 0.928129 0.001814 0.034553 0.003704 0.002456 0.991007 0.002833 0.450100 0.001071 0.545383 0.003447 0.255612 0.051621 0.489586 0.203182 0.337454 0.258354 0.165304 0.238889 0.247106 0.345111 0.159582 0.248201 0.155386 0.374454 0.223380 0.246780 Consensus sequence: BVVHAGGGGGCGRDHHB Alignment: BDHHMCGCCCCCTHVBB -GCVCCGCCMCCYCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondary Reverse Complement Original Motif Forward 3 14 0.037948 Species: Mus musculus Original motif 0.162979 0.284781 0.237433 0.314807 0.182449 0.447584 0.069464 0.300502 0.298973 0.261014 0.213211 0.226802 0.136039 0.433062 0.144274 0.286625 0.180084 0.395933 0.158565 0.265418 0.069354 0.748510 0.068898 0.113238 0.060485 0.717828 0.075333 0.146354 0.023280 0.071762 0.645500 0.259457 0.166896 0.749762 0.062730 0.020612 0.050401 0.775248 0.089072 0.085279 0.103847 0.767557 0.068804 0.059791 0.064815 0.748318 0.114588 0.072280 0.340921 0.071942 0.242981 0.344157 0.301967 0.263512 0.165927 0.268594 0.479800 0.222955 0.118441 0.178803 0.229469 0.283621 0.143099 0.343811 0.261733 0.180191 0.169905 0.388170 Consensus sequence: BHHBHCCGCCCCDHHHH Reverse complement motif 0.388170 0.180191 0.169905 0.261733 0.343811 0.283621 0.143099 0.229469 0.178803 0.222955 0.118441 0.479800 0.268594 0.263512 0.165927 0.301967 0.344157 0.071942 0.242981 0.340921 0.064815 0.114588 0.748318 0.072280 0.103847 0.068804 0.767557 0.059791 0.050401 0.089072 0.775248 0.085279 0.166896 0.062730 0.749762 0.020612 0.023280 0.645500 0.071762 0.259457 0.060485 0.075333 0.717828 0.146354 0.069354 0.068898 0.748510 0.113238 0.180084 0.158565 0.395933 0.265418 0.136039 0.144274 0.433062 0.286625 0.226802 0.261014 0.213211 0.298973 0.182449 0.069464 0.447584 0.300502 0.314807 0.284781 0.237433 0.162979 Consensus sequence: HHHHDGGGGCGGDBHDV Alignment: BHHBHCCGCCCCDHHHH --GCVCCGCCMCCYCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_secondary Reverse Complement Original Motif Forward 2 14 0.038336 Species: Mus musculus Original motif 0.316572 0.278382 0.152556 0.252490 0.167141 0.257034 0.259894 0.315931 0.175523 0.325956 0.259996 0.238525 0.165052 0.385677 0.239449 0.209822 0.069489 0.782718 0.072454 0.075339 0.049943 0.800636 0.031988 0.117433 0.223382 0.060306 0.552691 0.163621 0.072944 0.818252 0.034406 0.074398 0.070535 0.845127 0.062712 0.021626 0.031035 0.859354 0.055424 0.054187 0.063668 0.798503 0.067274 0.070554 0.348488 0.030697 0.197179 0.423636 0.307220 0.256470 0.181009 0.255301 0.460933 0.285057 0.090258 0.163752 0.315798 0.228431 0.171135 0.284637 0.374527 0.268328 0.198810 0.158335 Consensus sequence: HBBBCCGCCCCWHHHV Reverse complement motif 0.158335 0.268328 0.198810 0.374527 0.284637 0.228431 0.171135 0.315798 0.163752 0.285057 0.090258 0.460933 0.255301 0.256470 0.181009 0.307220 0.423636 0.030697 0.197179 0.348488 0.063668 0.067274 0.798503 0.070554 0.031035 0.055424 0.859354 0.054187 0.070535 0.062712 0.845127 0.021626 0.072944 0.034406 0.818252 0.074398 0.223382 0.552691 0.060306 0.163621 0.049943 0.031988 0.800636 0.117433 0.069489 0.072454 0.782718 0.075339 0.165052 0.239449 0.385677 0.209822 0.175523 0.259996 0.325956 0.238525 0.315931 0.257034 0.259894 0.167141 0.252490 0.278382 0.152556 0.316572 Consensus sequence: BHHHWGGGGCGGBBVH Alignment: HBBBCCGCCCCWHHHV -GCVCCGCCMCCYCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Original Motif Reverse Complement Backward 2 14 0.038831 Species: Mus musculus Original motif 0.201535 0.165213 0.201324 0.431929 0.136153 0.443451 0.179132 0.241264 0.263149 0.555137 0.067983 0.113731 0.142183 0.737634 0.045722 0.074461 0.044982 0.884112 0.045356 0.025549 0.246434 0.590578 0.022655 0.140333 0.123049 0.591257 0.033072 0.252622 0.018153 0.944742 0.010254 0.026851 0.035459 0.953844 0.003988 0.006709 0.020000 0.954344 0.005966 0.019690 0.015299 0.964390 0.006755 0.013557 0.028565 0.936152 0.011660 0.023623 0.300127 0.517309 0.029700 0.152863 0.159063 0.513443 0.051834 0.275660 0.158172 0.647055 0.133256 0.061516 Consensus sequence: DBCCCCCCCCCCMYC Reverse complement motif 0.158172 0.133256 0.647055 0.061516 0.159063 0.051834 0.513443 0.275660 0.300127 0.029700 0.517309 0.152863 0.028565 0.011660 0.936152 0.023623 0.015299 0.006755 0.964390 0.013557 0.020000 0.005966 0.954344 0.019690 0.035459 0.003988 0.953844 0.006709 0.018153 0.010254 0.944742 0.026851 0.123049 0.033072 0.591257 0.252622 0.246434 0.022655 0.590578 0.140333 0.044982 0.045356 0.884112 0.025549 0.142183 0.045722 0.737634 0.074461 0.263149 0.067983 0.555137 0.113731 0.136153 0.179132 0.443451 0.241264 0.431929 0.165213 0.201324 0.201535 Consensus sequence: GKRGGGGGGGGGGBD Alignment: GKRGGGGGGGGGGBD GGMGGRGGCGGVGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 51 Motif name: TFM2 Original motif 0.404762 0.047619 0.547619 0.000000 0.238095 0.119048 0.642857 0.000000 0.607143 0.071429 0.321429 0.000000 0.190476 0.000000 0.797619 0.011905 0.226190 0.000000 0.738095 0.035714 0.738095 0.000000 0.238095 0.023810 0.261905 0.142857 0.595238 0.000000 0.345238 0.071429 0.583333 0.000000 0.547619 0.000000 0.452381 0.000000 0.011905 0.000000 0.988095 0.000000 0.011905 0.309524 0.678571 0.000000 0.357143 0.261905 0.190476 0.190476 0.309524 0.000000 0.690476 0.000000 0.250000 0.095238 0.654762 0.000000 0.309524 0.047619 0.392857 0.250000 0.035714 0.095238 0.857143 0.011905 Consensus sequence: RGRGGAGRRGGHGGDG Reserve complement motif 0.035714 0.857143 0.095238 0.011905 0.309524 0.392857 0.047619 0.250000 0.250000 0.654762 0.095238 0.000000 0.309524 0.690476 0.000000 0.000000 0.190476 0.261905 0.190476 0.357143 0.011905 0.678571 0.309524 0.000000 0.011905 0.988095 0.000000 0.000000 0.000000 0.000000 0.452381 0.547619 0.345238 0.583333 0.071429 0.000000 0.261905 0.595238 0.142857 0.000000 0.023810 0.000000 0.238095 0.738095 0.226190 0.738095 0.000000 0.035714 0.190476 0.797619 0.000000 0.011905 0.000000 0.071429 0.321429 0.607143 0.238095 0.642857 0.119048 0.000000 0.404762 0.547619 0.047619 0.000000 Consensus sequence: CHCCBCCKMCTCCKCM ************************************************************************ Best Matches for Motif ID 51 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondary Reverse Complement Original Motif Backward 2 16 0.050868 Species: Mus musculus Original motif 0.162979 0.284781 0.237433 0.314807 0.182449 0.447584 0.069464 0.300502 0.298973 0.261014 0.213211 0.226802 0.136039 0.433062 0.144274 0.286625 0.180084 0.395933 0.158565 0.265418 0.069354 0.748510 0.068898 0.113238 0.060485 0.717828 0.075333 0.146354 0.023280 0.071762 0.645500 0.259457 0.166896 0.749762 0.062730 0.020612 0.050401 0.775248 0.089072 0.085279 0.103847 0.767557 0.068804 0.059791 0.064815 0.748318 0.114588 0.072280 0.340921 0.071942 0.242981 0.344157 0.301967 0.263512 0.165927 0.268594 0.479800 0.222955 0.118441 0.178803 0.229469 0.283621 0.143099 0.343811 0.261733 0.180191 0.169905 0.388170 Consensus sequence: BHHBHCCGCCCCDHHHH Reverse complement motif 0.388170 0.180191 0.169905 0.261733 0.343811 0.283621 0.143099 0.229469 0.178803 0.222955 0.118441 0.479800 0.268594 0.263512 0.165927 0.301967 0.344157 0.071942 0.242981 0.340921 0.064815 0.114588 0.748318 0.072280 0.103847 0.068804 0.767557 0.059791 0.050401 0.089072 0.775248 0.085279 0.166896 0.062730 0.749762 0.020612 0.023280 0.645500 0.071762 0.259457 0.060485 0.075333 0.717828 0.146354 0.069354 0.068898 0.748510 0.113238 0.180084 0.158565 0.395933 0.265418 0.136039 0.144274 0.433062 0.286625 0.226802 0.261014 0.213211 0.298973 0.182449 0.069464 0.447584 0.300502 0.314807 0.284781 0.237433 0.162979 Consensus sequence: HHHHDGGGGCGGDBHDV Alignment: BHHBHCCGCCCCDHHHH CHCCBCCKMCTCCKCM- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_secondary Original Motif Original Motif Backward 1 16 0.056474 Species: Mus musculus Original motif 0.182057 0.230014 0.276532 0.311397 0.122004 0.156883 0.366166 0.354947 0.209446 0.335433 0.185677 0.269444 0.140035 0.276547 0.302466 0.280952 0.124879 0.019371 0.809895 0.045854 0.647807 0.117014 0.183956 0.051224 0.021434 0.011745 0.954633 0.012188 0.017853 0.009441 0.315429 0.657277 0.166123 0.008326 0.807215 0.018337 0.022775 0.008972 0.947283 0.020970 0.038795 0.033592 0.781209 0.146405 0.728916 0.032888 0.088836 0.149360 0.197826 0.427858 0.055755 0.318561 0.264938 0.196184 0.092516 0.446362 0.267969 0.195624 0.318766 0.217641 0.225006 0.250404 0.267265 0.257324 Consensus sequence: BBHBGAGTGGGAHHDB Reverse complement motif 0.225006 0.267265 0.250404 0.257324 0.267969 0.318766 0.195624 0.217641 0.446362 0.196184 0.092516 0.264938 0.197826 0.055755 0.427858 0.318561 0.149360 0.032888 0.088836 0.728916 0.038795 0.781209 0.033592 0.146405 0.022775 0.947283 0.008972 0.020970 0.166123 0.807215 0.008326 0.018337 0.657277 0.009441 0.315429 0.017853 0.021434 0.954633 0.011745 0.012188 0.051224 0.117014 0.183956 0.647807 0.124879 0.809895 0.019371 0.045854 0.140035 0.302466 0.276547 0.280952 0.209446 0.185677 0.335433 0.269444 0.122004 0.366166 0.156883 0.354947 0.311397 0.230014 0.276532 0.182057 Consensus sequence: BHHDTCCCACTCBDBV Alignment: BBHBGAGTGGGAHHDB RGRGGAGRRGGHGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Original Motif Backward 4 16 0.058806 Species: Mus musculus Original motif 0.104824 0.412716 0.254506 0.227955 0.644922 0.065476 0.140479 0.149122 0.201205 0.166164 0.347131 0.285501 0.360606 0.256316 0.150766 0.232313 0.199831 0.240681 0.279350 0.280137 0.234308 0.204076 0.321306 0.240310 0.274112 0.462435 0.111425 0.152028 0.067070 0.717501 0.073934 0.141496 0.106745 0.084442 0.658566 0.150247 0.025128 0.967053 0.003585 0.004234 0.006412 0.982989 0.003227 0.007371 0.009588 0.877620 0.002571 0.110221 0.621521 0.355443 0.015669 0.007366 0.002600 0.980275 0.004191 0.012934 0.118773 0.026658 0.783843 0.070725 0.022358 0.822101 0.024684 0.130857 0.713212 0.080912 0.128793 0.077084 0.166568 0.250955 0.107934 0.474544 0.225040 0.222494 0.163301 0.389166 0.268976 0.223206 0.265314 0.242504 0.137052 0.229058 0.148439 0.485451 0.135819 0.304550 0.141994 0.417637 0.272440 0.319501 0.230580 0.177478 Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Reverse complement motif 0.272440 0.230580 0.319501 0.177478 0.417637 0.304550 0.141994 0.135819 0.485451 0.229058 0.148439 0.137052 0.242504 0.223206 0.265314 0.268976 0.389166 0.222494 0.163301 0.225040 0.474544 0.250955 0.107934 0.166568 0.077084 0.080912 0.128793 0.713212 0.022358 0.024684 0.822101 0.130857 0.118773 0.783843 0.026658 0.070725 0.002600 0.004191 0.980275 0.012934 0.007366 0.355443 0.015669 0.621521 0.009588 0.002571 0.877620 0.110221 0.006412 0.003227 0.982989 0.007371 0.025128 0.003585 0.967053 0.004234 0.106745 0.658566 0.084442 0.150247 0.067070 0.073934 0.717501 0.141496 0.274112 0.111425 0.462435 0.152028 0.234308 0.321306 0.204076 0.240310 0.280137 0.240681 0.279350 0.199831 0.232313 0.256316 0.150766 0.360606 0.201205 0.347131 0.166164 0.285501 0.149122 0.065476 0.140479 0.644922 0.104824 0.254506 0.412716 0.227955 Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB Alignment: BADHBDHCGCCCMCGCAHHDBBV ----CHCCBCCKMCTCCKCM--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondary Reverse Complement Original Motif Forward 4 16 0.058936 Species: Mus musculus Original motif 0.533199 0.080715 0.330435 0.055650 0.152031 0.212841 0.110234 0.524893 0.223934 0.264217 0.087037 0.424811 0.115097 0.339994 0.343861 0.201048 0.124993 0.418259 0.365642 0.091106 0.158365 0.292428 0.088361 0.460847 0.165479 0.561778 0.022254 0.250489 0.136873 0.259822 0.579763 0.023543 0.109570 0.747495 0.055128 0.087807 0.061912 0.792986 0.109031 0.036071 0.508703 0.267806 0.169766 0.053725 0.040912 0.838888 0.057470 0.062730 0.330554 0.606077 0.016192 0.047177 0.068079 0.563969 0.029742 0.338209 0.388799 0.291667 0.191284 0.128249 0.183283 0.578079 0.171100 0.067538 0.165163 0.097206 0.631377 0.106253 0.128564 0.435496 0.253275 0.182665 0.103395 0.088222 0.234758 0.573625 0.432879 0.276641 0.155895 0.134585 0.339199 0.148928 0.311036 0.200836 0.211958 0.298526 0.158443 0.331072 Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Reverse complement motif 0.331072 0.298526 0.158443 0.211958 0.200836 0.148928 0.311036 0.339199 0.134585 0.276641 0.155895 0.432879 0.573625 0.088222 0.234758 0.103395 0.128564 0.253275 0.435496 0.182665 0.165163 0.631377 0.097206 0.106253 0.183283 0.171100 0.578079 0.067538 0.128249 0.291667 0.191284 0.388799 0.068079 0.029742 0.563969 0.338209 0.330554 0.016192 0.606077 0.047177 0.040912 0.057470 0.838888 0.062730 0.053725 0.267806 0.169766 0.508703 0.061912 0.109031 0.792986 0.036071 0.109570 0.055128 0.747495 0.087807 0.136873 0.579763 0.259822 0.023543 0.165479 0.022254 0.561778 0.250489 0.460847 0.292428 0.088361 0.158365 0.124993 0.365642 0.418259 0.091106 0.115097 0.343861 0.339994 0.201048 0.424811 0.264217 0.087037 0.223934 0.524893 0.212841 0.110234 0.152031 0.055650 0.080715 0.330435 0.533199 Consensus sequence: HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH ---CHCCBCCKMCTCCKCM--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Original Motif Reverse Complement Forward 1 16 0.059984 Species: Mus musculus Original motif 0.136946 0.396508 0.135309 0.331236 0.185528 0.417538 0.215409 0.181525 0.171276 0.341901 0.172832 0.313991 0.145641 0.590572 0.146376 0.117412 0.138035 0.660416 0.114016 0.087533 0.222728 0.750532 0.007528 0.019212 0.024633 0.963314 0.001894 0.010159 0.009557 0.979956 0.000642 0.009844 0.010416 0.977424 0.000541 0.011619 0.026401 0.956740 0.001544 0.015314 0.195502 0.755959 0.011060 0.037480 0.491291 0.364785 0.025613 0.118311 0.305153 0.398160 0.071680 0.225008 0.253497 0.232647 0.213246 0.300610 0.156964 0.297876 0.144683 0.400477 0.179549 0.292514 0.319462 0.208475 Consensus sequence: HVBCCCCCCCCMHHHB Reverse complement motif 0.179549 0.319462 0.292514 0.208475 0.400477 0.297876 0.144683 0.156964 0.300610 0.232647 0.213246 0.253497 0.305153 0.071680 0.398160 0.225008 0.118311 0.364785 0.025613 0.491291 0.195502 0.011060 0.755959 0.037480 0.026401 0.001544 0.956740 0.015314 0.010416 0.000541 0.977424 0.011619 0.009557 0.000642 0.979956 0.009844 0.024633 0.001894 0.963314 0.010159 0.222728 0.007528 0.750532 0.019212 0.138035 0.114016 0.660416 0.087533 0.145641 0.146376 0.590572 0.117412 0.171276 0.172832 0.341901 0.313991 0.185528 0.215409 0.417538 0.181525 0.136946 0.135309 0.396508 0.331236 Consensus sequence: BHHDYGGGGGGGGBVD Alignment: BHHDYGGGGGGGGBVD RGRGGAGRRGGHGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 52 Motif name: TFM1 Original motif 0.384615 0.076923 0.000000 0.538462 0.256410 0.000000 0.000000 0.743590 0.076923 0.153846 0.333333 0.435897 0.230769 0.000000 0.000000 0.769231 0.000000 0.256410 0.000000 0.743590 0.000000 0.000000 0.076923 0.923077 0.025641 0.076923 0.256410 0.641026 0.000000 0.128205 0.230769 0.641026 0.333333 0.230769 0.205128 0.230769 0.282051 0.179487 0.000000 0.538462 0.051282 0.128205 0.000000 0.820513 0.128205 0.000000 0.000000 0.871795 0.256410 0.025641 0.179487 0.538462 0.102564 0.000000 0.000000 0.897436 0.128205 0.000000 0.102564 0.769231 0.128205 0.025641 0.205128 0.641026 0.102564 0.333333 0.256410 0.307692 0.256410 0.102564 0.000000 0.641026 Consensus sequence: WTKTTTTTHWTTTTTTBT Reserve complement motif 0.641026 0.102564 0.000000 0.256410 0.102564 0.256410 0.333333 0.307692 0.641026 0.025641 0.205128 0.128205 0.769231 0.000000 0.102564 0.128205 0.897436 0.000000 0.000000 0.102564 0.538462 0.025641 0.179487 0.256410 0.871795 0.000000 0.000000 0.128205 0.820513 0.128205 0.000000 0.051282 0.538462 0.179487 0.000000 0.282051 0.230769 0.230769 0.205128 0.333333 0.641026 0.128205 0.230769 0.000000 0.641026 0.076923 0.256410 0.025641 0.923077 0.000000 0.076923 0.000000 0.743590 0.256410 0.000000 0.000000 0.769231 0.000000 0.000000 0.230769 0.435897 0.153846 0.333333 0.076923 0.743590 0.000000 0.000000 0.256410 0.538462 0.076923 0.000000 0.384615 Consensus sequence: ABAAAAAAWHAAAAARAW ************************************************************************ Best Matches for Motif ID 52 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Reverse Complement Original Motif Forward 5 18 0.040610 Species: Mus musculus Original motif 0.360997 0.300272 0.115555 0.223177 0.309749 0.228429 0.166233 0.295589 0.149419 0.176868 0.240155 0.433558 0.379704 0.095791 0.276373 0.248133 0.394549 0.174184 0.130641 0.300626 0.443749 0.070776 0.211081 0.274393 0.364301 0.074356 0.370406 0.190936 0.791976 0.038475 0.093390 0.076159 0.963721 0.001826 0.002456 0.031997 0.004516 0.954596 0.008092 0.032796 0.981080 0.002062 0.002161 0.014697 0.986185 0.001846 0.006976 0.004992 0.059567 0.003649 0.002189 0.934595 0.495328 0.024257 0.240450 0.239965 0.305027 0.094878 0.526069 0.074025 0.418442 0.196237 0.158323 0.226998 0.336713 0.220452 0.191155 0.251680 0.192296 0.300342 0.169047 0.338315 0.240387 0.144634 0.128513 0.486465 0.290763 0.271259 0.116600 0.321377 0.224825 0.296233 0.229255 0.249687 0.493240 0.171285 0.075148 0.260326 Consensus sequence: HHBDHDDAACAATDRHHHHHBW Reverse complement motif 0.260326 0.171285 0.075148 0.493240 0.224825 0.229255 0.296233 0.249687 0.321377 0.271259 0.116600 0.290763 0.486465 0.144634 0.128513 0.240387 0.338315 0.300342 0.169047 0.192296 0.251680 0.220452 0.191155 0.336713 0.226998 0.196237 0.158323 0.418442 0.305027 0.526069 0.094878 0.074025 0.239965 0.024257 0.240450 0.495328 0.934595 0.003649 0.002189 0.059567 0.004992 0.001846 0.006976 0.986185 0.014697 0.002062 0.002161 0.981080 0.004516 0.008092 0.954596 0.032796 0.031997 0.001826 0.002456 0.963721 0.076159 0.038475 0.093390 0.791976 0.364301 0.370406 0.074356 0.190936 0.274393 0.070776 0.211081 0.443749 0.300626 0.174184 0.130641 0.394549 0.248133 0.095791 0.276373 0.379704 0.433558 0.176868 0.240155 0.149419 0.295589 0.228429 0.166233 0.309749 0.223177 0.300272 0.115555 0.360997 Consensus sequence: WBHHHHHMDATTGTTHDHDVHH Alignment: HHBDHDDAACAATDRHHHHHBW ----ABAAAAAAWHAAAAARAW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Original Motif Reverse Complement Backward 2 18 0.054924 Species: Mus musculus Original motif 0.151572 0.262753 0.258275 0.327401 0.221834 0.113385 0.275380 0.389400 0.297769 0.136928 0.134678 0.430625 0.270099 0.110415 0.271106 0.348380 0.265471 0.090253 0.223340 0.420936 0.616582 0.090091 0.171960 0.121367 0.197318 0.107541 0.406904 0.288237 0.798258 0.046950 0.001406 0.153385 0.003195 0.002516 0.989707 0.004582 0.991503 0.002748 0.002617 0.003132 0.005015 0.002764 0.003026 0.989195 0.948394 0.008932 0.001344 0.041330 0.973109 0.004100 0.004081 0.018710 0.040365 0.113905 0.828185 0.017545 0.736608 0.130524 0.113464 0.019404 0.415921 0.106101 0.316613 0.161365 0.376582 0.170927 0.155572 0.296919 0.137731 0.197151 0.211055 0.454064 0.324853 0.122747 0.246107 0.306293 0.462490 0.207311 0.159392 0.170807 0.380420 0.188972 0.311990 0.118618 0.222178 0.157873 0.380486 0.239463 Consensus sequence: BDHDDADAGATAAGADHBDHVD Reverse complement motif 0.222178 0.380486 0.157873 0.239463 0.118618 0.188972 0.311990 0.380420 0.170807 0.207311 0.159392 0.462490 0.306293 0.122747 0.246107 0.324853 0.454064 0.197151 0.211055 0.137731 0.296919 0.170927 0.155572 0.376582 0.161365 0.106101 0.316613 0.415921 0.019404 0.130524 0.113464 0.736608 0.040365 0.828185 0.113905 0.017545 0.018710 0.004100 0.004081 0.973109 0.041330 0.008932 0.001344 0.948394 0.989195 0.002764 0.003026 0.005015 0.003132 0.002748 0.002617 0.991503 0.003195 0.989707 0.002516 0.004582 0.153385 0.046950 0.001406 0.798258 0.197318 0.406904 0.107541 0.288237 0.121367 0.090091 0.171960 0.616582 0.420936 0.090253 0.223340 0.265471 0.348380 0.110415 0.271106 0.270099 0.430625 0.136928 0.134678 0.297769 0.389400 0.113385 0.275380 0.221834 0.327401 0.262753 0.258275 0.151572 Consensus sequence: HBHDVHDTCTTATCTHTDDHDV Alignment: HBHDVHDTCTTATCTHTDDHDV ---WTKTTTTTHWTTTTTTBT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Reverse Complement Reverse Complement Backward 2 18 0.055432 Species: Mus musculus Original motif 0.067627 0.131333 0.654425 0.146615 0.156488 0.114442 0.145630 0.583441 0.206450 0.265630 0.358017 0.169903 0.090729 0.460713 0.274712 0.173847 0.285994 0.099998 0.154485 0.459523 0.635908 0.184787 0.072982 0.106323 0.748421 0.039204 0.092605 0.119769 0.081342 0.061327 0.044532 0.812799 0.143120 0.043879 0.024216 0.788785 0.247544 0.092102 0.621453 0.038901 0.295531 0.036295 0.027594 0.640580 0.194561 0.305468 0.339916 0.160055 0.175038 0.193568 0.101212 0.530182 0.145226 0.167488 0.559871 0.127415 0.271501 0.237429 0.206701 0.284369 0.216834 0.109191 0.569605 0.104370 0.182624 0.177160 0.300475 0.339742 0.331737 0.198645 0.265137 0.204482 0.230155 0.359365 0.183450 0.227029 0.056581 0.067297 0.463052 0.413070 0.198891 0.324626 0.304424 0.172059 0.181968 0.287547 0.202419 0.328066 Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Reverse complement motif 0.328066 0.287547 0.202419 0.181968 0.198891 0.304424 0.324626 0.172059 0.056581 0.463052 0.067297 0.413070 0.230155 0.183450 0.359365 0.227029 0.204482 0.198645 0.265137 0.331737 0.339742 0.177160 0.300475 0.182624 0.216834 0.569605 0.109191 0.104370 0.284369 0.237429 0.206701 0.271501 0.145226 0.559871 0.167488 0.127415 0.530182 0.193568 0.101212 0.175038 0.194561 0.339916 0.305468 0.160055 0.640580 0.036295 0.027594 0.295531 0.247544 0.621453 0.092102 0.038901 0.788785 0.043879 0.024216 0.143120 0.812799 0.061327 0.044532 0.081342 0.119769 0.039204 0.092605 0.748421 0.106323 0.184787 0.072982 0.635908 0.459523 0.099998 0.154485 0.285994 0.090729 0.274712 0.460713 0.173847 0.206450 0.358017 0.265630 0.169903 0.583441 0.114442 0.145630 0.156488 0.067627 0.654425 0.131333 0.146615 Consensus sequence: VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC ---ABAAAAAAWHAAAAARAW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Reverse Complement Original Motif Forward 2 18 0.058289 Species: Mus musculus Original motif 0.399785 0.446658 0.111435 0.042122 0.535175 0.103991 0.089706 0.271128 0.078171 0.387987 0.375083 0.158759 0.309001 0.519142 0.070618 0.101239 0.201844 0.255818 0.323149 0.219190 0.534101 0.109845 0.235026 0.121028 0.656038 0.037473 0.261484 0.045006 0.315713 0.164290 0.471815 0.048182 0.651960 0.009412 0.328237 0.010391 0.937365 0.017313 0.007516 0.037807 0.019983 0.044238 0.012387 0.923392 0.061195 0.021485 0.881645 0.035675 0.017521 0.952998 0.013139 0.016342 0.254160 0.029735 0.493023 0.223082 0.239200 0.593324 0.114503 0.052973 0.610822 0.071539 0.099169 0.218470 0.166610 0.389712 0.204400 0.239278 0.227752 0.361626 0.178497 0.232125 0.537030 0.182466 0.026035 0.254470 0.235902 0.151006 0.043788 0.569304 0.081851 0.250397 0.590059 0.077693 0.340417 0.189613 0.272075 0.197895 Consensus sequence: MWSMBAARRATGCDCABHATGD Reverse complement motif 0.197895 0.189613 0.272075 0.340417 0.081851 0.590059 0.250397 0.077693 0.569304 0.151006 0.043788 0.235902 0.254470 0.182466 0.026035 0.537030 0.227752 0.178497 0.361626 0.232125 0.166610 0.204400 0.389712 0.239278 0.218470 0.071539 0.099169 0.610822 0.239200 0.114503 0.593324 0.052973 0.254160 0.493023 0.029735 0.223082 0.017521 0.013139 0.952998 0.016342 0.061195 0.881645 0.021485 0.035675 0.923392 0.044238 0.012387 0.019983 0.037807 0.017313 0.007516 0.937365 0.010391 0.009412 0.328237 0.651960 0.315713 0.471815 0.164290 0.048182 0.045006 0.037473 0.261484 0.656038 0.121028 0.109845 0.235026 0.534101 0.201844 0.323149 0.255818 0.219190 0.309001 0.070618 0.519142 0.101239 0.078171 0.375083 0.387987 0.158759 0.271128 0.103991 0.089706 0.535175 0.399785 0.111435 0.446658 0.042122 Consensus sequence: DCATDBTGHGCATKMTTBRSWR Alignment: MWSMBAARRATGCDCABHATGD -ABAAAAAAWHAAAAARAW--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondary Reverse Complement Original Motif Backward 3 18 0.059408 Species: Mus musculus Original motif 0.177641 0.319872 0.115137 0.387350 0.136644 0.182137 0.205873 0.475347 0.254263 0.244280 0.165207 0.336250 0.240415 0.207557 0.237497 0.314530 0.271041 0.214702 0.364395 0.149863 0.095475 0.320104 0.191738 0.392682 0.500902 0.142722 0.026556 0.329820 0.051221 0.023698 0.897245 0.027836 0.922410 0.027509 0.024058 0.026023 0.030735 0.070903 0.024248 0.874114 0.242120 0.231992 0.225143 0.300745 0.106956 0.220471 0.283490 0.389083 0.152079 0.165830 0.135066 0.547025 0.839205 0.051581 0.060119 0.049095 0.041204 0.069147 0.070830 0.818819 0.051861 0.848177 0.027599 0.072363 0.383793 0.016807 0.397470 0.201931 0.381899 0.215846 0.255908 0.146347 0.094792 0.358651 0.280905 0.265652 0.296132 0.181545 0.178433 0.343890 0.301997 0.254722 0.108566 0.334714 0.349481 0.270693 0.137507 0.242319 Consensus sequence: HBHDVBWGATHBTATCRVBHHH Reverse complement motif 0.242319 0.270693 0.137507 0.349481 0.334714 0.254722 0.108566 0.301997 0.343890 0.181545 0.178433 0.296132 0.094792 0.280905 0.358651 0.265652 0.146347 0.215846 0.255908 0.381899 0.383793 0.397470 0.016807 0.201931 0.051861 0.027599 0.848177 0.072363 0.818819 0.069147 0.070830 0.041204 0.049095 0.051581 0.060119 0.839205 0.547025 0.165830 0.135066 0.152079 0.389083 0.220471 0.283490 0.106956 0.300745 0.231992 0.225143 0.242120 0.874114 0.070903 0.024248 0.030735 0.026023 0.027509 0.024058 0.922410 0.051221 0.897245 0.023698 0.027836 0.329820 0.142722 0.026556 0.500902 0.392682 0.320104 0.191738 0.095475 0.271041 0.364395 0.214702 0.149863 0.314530 0.207557 0.237497 0.240415 0.336250 0.244280 0.165207 0.254263 0.475347 0.182137 0.205873 0.136644 0.387350 0.319872 0.115137 0.177641 Consensus sequence: HHHBBMGATAVHATCWVVDHVH Alignment: HBHDVBWGATHBTATCRVBHHH --ABAAAAAAWHAAAAARAW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 53 Motif name: TFM3 Original motif 0.454545 0.000000 0.000000 0.545455 0.500000 0.000000 0.000000 0.500000 0.318182 0.181818 0.090909 0.409091 0.000000 0.000000 0.136364 0.863636 0.318182 0.000000 0.000000 0.681818 0.045455 0.000000 0.272727 0.681818 0.272727 0.045455 0.090909 0.590909 0.272727 0.090909 0.000000 0.636364 0.045455 0.818182 0.000000 0.136364 0.727273 0.000000 0.000000 0.272727 0.090909 0.318182 0.227273 0.363636 0.863636 0.045455 0.000000 0.090909 0.818182 0.090909 0.090909 0.000000 0.500000 0.090909 0.090909 0.318182 0.136364 0.227273 0.000000 0.636364 0.227273 0.000000 0.000000 0.772727 0.363636 0.090909 0.000000 0.545455 0.772727 0.181818 0.045455 0.000000 Consensus sequence: WWHTTTTTCABAAWTTWA Reserve complement motif 0.000000 0.181818 0.045455 0.772727 0.545455 0.090909 0.000000 0.363636 0.772727 0.000000 0.000000 0.227273 0.636364 0.227273 0.000000 0.136364 0.318182 0.090909 0.090909 0.500000 0.000000 0.090909 0.090909 0.818182 0.090909 0.045455 0.000000 0.863636 0.363636 0.318182 0.227273 0.090909 0.272727 0.000000 0.000000 0.727273 0.045455 0.000000 0.818182 0.136364 0.636364 0.090909 0.000000 0.272727 0.590909 0.045455 0.090909 0.272727 0.681818 0.000000 0.272727 0.045455 0.681818 0.000000 0.000000 0.318182 0.863636 0.000000 0.136364 0.000000 0.409091 0.181818 0.090909 0.318182 0.500000 0.000000 0.000000 0.500000 0.545455 0.000000 0.000000 0.454545 Consensus sequence: TWAAWTTVTGAAAAAHWW ************************************************************************ Best Matches for Motif ID 53 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Original Motif Reverse Complement Backward 5 18 0.056023 Species: Mus musculus Original motif 0.067627 0.131333 0.654425 0.146615 0.156488 0.114442 0.145630 0.583441 0.206450 0.265630 0.358017 0.169903 0.090729 0.460713 0.274712 0.173847 0.285994 0.099998 0.154485 0.459523 0.635908 0.184787 0.072982 0.106323 0.748421 0.039204 0.092605 0.119769 0.081342 0.061327 0.044532 0.812799 0.143120 0.043879 0.024216 0.788785 0.247544 0.092102 0.621453 0.038901 0.295531 0.036295 0.027594 0.640580 0.194561 0.305468 0.339916 0.160055 0.175038 0.193568 0.101212 0.530182 0.145226 0.167488 0.559871 0.127415 0.271501 0.237429 0.206701 0.284369 0.216834 0.109191 0.569605 0.104370 0.182624 0.177160 0.300475 0.339742 0.331737 0.198645 0.265137 0.204482 0.230155 0.359365 0.183450 0.227029 0.056581 0.067297 0.463052 0.413070 0.198891 0.324626 0.304424 0.172059 0.181968 0.287547 0.202419 0.328066 Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Reverse complement motif 0.328066 0.287547 0.202419 0.181968 0.198891 0.304424 0.324626 0.172059 0.056581 0.463052 0.067297 0.413070 0.230155 0.183450 0.359365 0.227029 0.204482 0.198645 0.265137 0.331737 0.339742 0.177160 0.300475 0.182624 0.216834 0.569605 0.109191 0.104370 0.284369 0.237429 0.206701 0.271501 0.145226 0.559871 0.167488 0.127415 0.530182 0.193568 0.101212 0.175038 0.194561 0.339916 0.305468 0.160055 0.640580 0.036295 0.027594 0.295531 0.247544 0.621453 0.092102 0.038901 0.788785 0.043879 0.024216 0.143120 0.812799 0.061327 0.044532 0.081342 0.119769 0.039204 0.092605 0.748421 0.106323 0.184787 0.072982 0.635908 0.459523 0.099998 0.154485 0.285994 0.090729 0.274712 0.460713 0.173847 0.206450 0.358017 0.265630 0.169903 0.583441 0.114442 0.145630 0.156488 0.067627 0.654425 0.131333 0.146615 Consensus sequence: VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC WWHTTTTTCABAAWTTWA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Original Motif Original Motif Forward 4 18 0.065044 Species: Mus musculus Original motif 0.151572 0.262753 0.258275 0.327401 0.221834 0.113385 0.275380 0.389400 0.297769 0.136928 0.134678 0.430625 0.270099 0.110415 0.271106 0.348380 0.265471 0.090253 0.223340 0.420936 0.616582 0.090091 0.171960 0.121367 0.197318 0.107541 0.406904 0.288237 0.798258 0.046950 0.001406 0.153385 0.003195 0.002516 0.989707 0.004582 0.991503 0.002748 0.002617 0.003132 0.005015 0.002764 0.003026 0.989195 0.948394 0.008932 0.001344 0.041330 0.973109 0.004100 0.004081 0.018710 0.040365 0.113905 0.828185 0.017545 0.736608 0.130524 0.113464 0.019404 0.415921 0.106101 0.316613 0.161365 0.376582 0.170927 0.155572 0.296919 0.137731 0.197151 0.211055 0.454064 0.324853 0.122747 0.246107 0.306293 0.462490 0.207311 0.159392 0.170807 0.380420 0.188972 0.311990 0.118618 0.222178 0.157873 0.380486 0.239463 Consensus sequence: BDHDDADAGATAAGADHBDHVD Reverse complement motif 0.222178 0.380486 0.157873 0.239463 0.118618 0.188972 0.311990 0.380420 0.170807 0.207311 0.159392 0.462490 0.306293 0.122747 0.246107 0.324853 0.454064 0.197151 0.211055 0.137731 0.296919 0.170927 0.155572 0.376582 0.161365 0.106101 0.316613 0.415921 0.019404 0.130524 0.113464 0.736608 0.040365 0.828185 0.113905 0.017545 0.018710 0.004100 0.004081 0.973109 0.041330 0.008932 0.001344 0.948394 0.989195 0.002764 0.003026 0.005015 0.003132 0.002748 0.002617 0.991503 0.003195 0.989707 0.002516 0.004582 0.153385 0.046950 0.001406 0.798258 0.197318 0.406904 0.107541 0.288237 0.121367 0.090091 0.171960 0.616582 0.420936 0.090253 0.223340 0.265471 0.348380 0.110415 0.271106 0.270099 0.430625 0.136928 0.134678 0.297769 0.389400 0.113385 0.275380 0.221834 0.327401 0.262753 0.258275 0.151572 Consensus sequence: HBHDVHDTCTTATCTHTDDHDV Alignment: BDHDDADAGATAAGADHBDHVD ---WWHTTTTTCABAAWTTWA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondary Original Motif Original Motif Backward 1 18 0.069710 Species: Mus musculus Original motif 0.177641 0.319872 0.115137 0.387350 0.136644 0.182137 0.205873 0.475347 0.254263 0.244280 0.165207 0.336250 0.240415 0.207557 0.237497 0.314530 0.271041 0.214702 0.364395 0.149863 0.095475 0.320104 0.191738 0.392682 0.500902 0.142722 0.026556 0.329820 0.051221 0.023698 0.897245 0.027836 0.922410 0.027509 0.024058 0.026023 0.030735 0.070903 0.024248 0.874114 0.242120 0.231992 0.225143 0.300745 0.106956 0.220471 0.283490 0.389083 0.152079 0.165830 0.135066 0.547025 0.839205 0.051581 0.060119 0.049095 0.041204 0.069147 0.070830 0.818819 0.051861 0.848177 0.027599 0.072363 0.383793 0.016807 0.397470 0.201931 0.381899 0.215846 0.255908 0.146347 0.094792 0.358651 0.280905 0.265652 0.296132 0.181545 0.178433 0.343890 0.301997 0.254722 0.108566 0.334714 0.349481 0.270693 0.137507 0.242319 Consensus sequence: HBHDVBWGATHBTATCRVBHHH Reverse complement motif 0.242319 0.270693 0.137507 0.349481 0.334714 0.254722 0.108566 0.301997 0.343890 0.181545 0.178433 0.296132 0.094792 0.280905 0.358651 0.265652 0.146347 0.215846 0.255908 0.381899 0.383793 0.397470 0.016807 0.201931 0.051861 0.027599 0.848177 0.072363 0.818819 0.069147 0.070830 0.041204 0.049095 0.051581 0.060119 0.839205 0.547025 0.165830 0.135066 0.152079 0.389083 0.220471 0.283490 0.106956 0.300745 0.231992 0.225143 0.242120 0.874114 0.070903 0.024248 0.030735 0.026023 0.027509 0.024058 0.922410 0.051221 0.897245 0.023698 0.027836 0.329820 0.142722 0.026556 0.500902 0.392682 0.320104 0.191738 0.095475 0.271041 0.364395 0.214702 0.149863 0.314530 0.207557 0.237497 0.240415 0.336250 0.244280 0.165207 0.254263 0.475347 0.182137 0.205873 0.136644 0.387350 0.319872 0.115137 0.177641 Consensus sequence: HHHBBMGATAVHATCWVVDHVH Alignment: HBHDVBWGATHBTATCRVBHHH ----WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Reverse Complement Reverse Complement Forward 1 18 0.071426 Species: Mus musculus Original motif 0.360997 0.300272 0.115555 0.223177 0.309749 0.228429 0.166233 0.295589 0.149419 0.176868 0.240155 0.433558 0.379704 0.095791 0.276373 0.248133 0.394549 0.174184 0.130641 0.300626 0.443749 0.070776 0.211081 0.274393 0.364301 0.074356 0.370406 0.190936 0.791976 0.038475 0.093390 0.076159 0.963721 0.001826 0.002456 0.031997 0.004516 0.954596 0.008092 0.032796 0.981080 0.002062 0.002161 0.014697 0.986185 0.001846 0.006976 0.004992 0.059567 0.003649 0.002189 0.934595 0.495328 0.024257 0.240450 0.239965 0.305027 0.094878 0.526069 0.074025 0.418442 0.196237 0.158323 0.226998 0.336713 0.220452 0.191155 0.251680 0.192296 0.300342 0.169047 0.338315 0.240387 0.144634 0.128513 0.486465 0.290763 0.271259 0.116600 0.321377 0.224825 0.296233 0.229255 0.249687 0.493240 0.171285 0.075148 0.260326 Consensus sequence: HHBDHDDAACAATDRHHHHHBW Reverse complement motif 0.260326 0.171285 0.075148 0.493240 0.224825 0.229255 0.296233 0.249687 0.321377 0.271259 0.116600 0.290763 0.486465 0.144634 0.128513 0.240387 0.338315 0.300342 0.169047 0.192296 0.251680 0.220452 0.191155 0.336713 0.226998 0.196237 0.158323 0.418442 0.305027 0.526069 0.094878 0.074025 0.239965 0.024257 0.240450 0.495328 0.934595 0.003649 0.002189 0.059567 0.004992 0.001846 0.006976 0.986185 0.014697 0.002062 0.002161 0.981080 0.004516 0.008092 0.954596 0.032796 0.031997 0.001826 0.002456 0.963721 0.076159 0.038475 0.093390 0.791976 0.364301 0.370406 0.074356 0.190936 0.274393 0.070776 0.211081 0.443749 0.300626 0.174184 0.130641 0.394549 0.248133 0.095791 0.276373 0.379704 0.433558 0.176868 0.240155 0.149419 0.295589 0.228429 0.166233 0.309749 0.223177 0.300272 0.115555 0.360997 Consensus sequence: WBHHHHHMDATTGTTHDHDVHH Alignment: WBHHHHHMDATTGTTHDHDVHH TWAAWTTVTGAAAAAHWW---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Original Motif Reverse Complement Backward 3 18 0.073131 Species: Mus musculus Original motif 0.399785 0.446658 0.111435 0.042122 0.535175 0.103991 0.089706 0.271128 0.078171 0.387987 0.375083 0.158759 0.309001 0.519142 0.070618 0.101239 0.201844 0.255818 0.323149 0.219190 0.534101 0.109845 0.235026 0.121028 0.656038 0.037473 0.261484 0.045006 0.315713 0.164290 0.471815 0.048182 0.651960 0.009412 0.328237 0.010391 0.937365 0.017313 0.007516 0.037807 0.019983 0.044238 0.012387 0.923392 0.061195 0.021485 0.881645 0.035675 0.017521 0.952998 0.013139 0.016342 0.254160 0.029735 0.493023 0.223082 0.239200 0.593324 0.114503 0.052973 0.610822 0.071539 0.099169 0.218470 0.166610 0.389712 0.204400 0.239278 0.227752 0.361626 0.178497 0.232125 0.537030 0.182466 0.026035 0.254470 0.235902 0.151006 0.043788 0.569304 0.081851 0.250397 0.590059 0.077693 0.340417 0.189613 0.272075 0.197895 Consensus sequence: MWSMBAARRATGCDCABHATGD Reverse complement motif 0.197895 0.189613 0.272075 0.340417 0.081851 0.590059 0.250397 0.077693 0.569304 0.151006 0.043788 0.235902 0.254470 0.182466 0.026035 0.537030 0.227752 0.178497 0.361626 0.232125 0.166610 0.204400 0.389712 0.239278 0.218470 0.071539 0.099169 0.610822 0.239200 0.114503 0.593324 0.052973 0.254160 0.493023 0.029735 0.223082 0.017521 0.013139 0.952998 0.016342 0.061195 0.881645 0.021485 0.035675 0.923392 0.044238 0.012387 0.019983 0.037807 0.017313 0.007516 0.937365 0.010391 0.009412 0.328237 0.651960 0.315713 0.471815 0.164290 0.048182 0.045006 0.037473 0.261484 0.656038 0.121028 0.109845 0.235026 0.534101 0.201844 0.323149 0.255818 0.219190 0.309001 0.070618 0.519142 0.101239 0.078171 0.375083 0.387987 0.158759 0.271128 0.103991 0.089706 0.535175 0.399785 0.111435 0.446658 0.042122 Consensus sequence: DCATDBTGHGCATKMTTBRSWR Alignment: DCATDBTGHGCATKMTTBRSWR --WWHTTTTTCABAAWTTWA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 54 Motif name: TFM12 Original motif 0.000000 1.000000 0.000000 0.000000 0.190000 0.400000 0.000000 0.410000 0.000000 0.520000 0.190000 0.290000 0.110000 0.610000 0.100000 0.180000 0.180000 0.290000 0.330000 0.200000 0.000000 0.380000 0.350000 0.270000 0.000000 0.820000 0.000000 0.180000 0.180000 0.390000 0.000000 0.430000 0.000000 0.530000 0.000000 0.470000 0.000000 0.470000 0.150000 0.380000 0.000000 0.240000 0.240000 0.520000 0.000000 0.870000 0.000000 0.130000 0.050000 0.680000 0.000000 0.270000 0.180000 0.380000 0.100000 0.340000 0.000000 0.620000 0.220000 0.160000 0.000000 0.660000 0.090000 0.250000 0.200000 0.150000 0.130000 0.520000 0.040000 0.460000 0.160000 0.340000 0.060000 0.530000 0.030000 0.380000 0.050000 0.570000 0.040000 0.340000 Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reserve complement motif 0.050000 0.040000 0.570000 0.340000 0.060000 0.030000 0.530000 0.380000 0.040000 0.160000 0.460000 0.340000 0.520000 0.150000 0.130000 0.200000 0.000000 0.090000 0.660000 0.250000 0.000000 0.220000 0.620000 0.160000 0.180000 0.100000 0.380000 0.340000 0.050000 0.000000 0.680000 0.270000 0.000000 0.000000 0.870000 0.130000 0.520000 0.240000 0.240000 0.000000 0.000000 0.150000 0.470000 0.380000 0.000000 0.000000 0.530000 0.470000 0.430000 0.390000 0.000000 0.180000 0.000000 0.000000 0.820000 0.180000 0.000000 0.350000 0.380000 0.270000 0.180000 0.330000 0.290000 0.200000 0.110000 0.100000 0.610000 0.180000 0.000000 0.190000 0.520000 0.290000 0.410000 0.400000 0.000000 0.190000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: KKKAGGDGGAKKMGBBGKMG ************************************************************************ Best Matches for Motif ID 54 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondary Reverse Complement Reverse Complement Backward 1 20 0.052857 Species: Mus musculus Original motif 0.533199 0.080715 0.330435 0.055650 0.152031 0.212841 0.110234 0.524893 0.223934 0.264217 0.087037 0.424811 0.115097 0.339994 0.343861 0.201048 0.124993 0.418259 0.365642 0.091106 0.158365 0.292428 0.088361 0.460847 0.165479 0.561778 0.022254 0.250489 0.136873 0.259822 0.579763 0.023543 0.109570 0.747495 0.055128 0.087807 0.061912 0.792986 0.109031 0.036071 0.508703 0.267806 0.169766 0.053725 0.040912 0.838888 0.057470 0.062730 0.330554 0.606077 0.016192 0.047177 0.068079 0.563969 0.029742 0.338209 0.388799 0.291667 0.191284 0.128249 0.183283 0.578079 0.171100 0.067538 0.165163 0.097206 0.631377 0.106253 0.128564 0.435496 0.253275 0.182665 0.103395 0.088222 0.234758 0.573625 0.432879 0.276641 0.155895 0.134585 0.339199 0.148928 0.311036 0.200836 0.211958 0.298526 0.158443 0.331072 Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Reverse complement motif 0.331072 0.298526 0.158443 0.211958 0.200836 0.148928 0.311036 0.339199 0.134585 0.276641 0.155895 0.432879 0.573625 0.088222 0.234758 0.103395 0.128564 0.253275 0.435496 0.182665 0.165163 0.631377 0.097206 0.106253 0.183283 0.171100 0.578079 0.067538 0.128249 0.291667 0.191284 0.388799 0.068079 0.029742 0.563969 0.338209 0.330554 0.016192 0.606077 0.047177 0.040912 0.057470 0.838888 0.062730 0.053725 0.267806 0.169766 0.508703 0.061912 0.109031 0.792986 0.036071 0.109570 0.055128 0.747495 0.087807 0.136873 0.579763 0.259822 0.023543 0.165479 0.022254 0.561778 0.250489 0.460847 0.292428 0.088361 0.158365 0.124993 0.365642 0.418259 0.091106 0.115097 0.343861 0.339994 0.201048 0.424811 0.264217 0.087037 0.223934 0.524893 0.212841 0.110234 0.152031 0.055650 0.080715 0.330435 0.533199 Consensus sequence: HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK --KKKAGGDGGAKKMGBBGKMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Original Motif Original Motif Forward 1 20 0.058559 Species: Mus musculus Original motif 0.168550 0.345968 0.396524 0.088958 0.038113 0.360882 0.114042 0.486963 0.349356 0.180599 0.051416 0.418629 0.258773 0.332518 0.244932 0.163778 0.371663 0.208591 0.263136 0.156609 0.225440 0.321741 0.175932 0.276887 0.100827 0.656850 0.018644 0.223679 0.494140 0.155427 0.327424 0.023009 0.105642 0.805846 0.027712 0.060800 0.065110 0.845072 0.058046 0.031772 0.649343 0.110180 0.180680 0.059797 0.064269 0.853604 0.066860 0.015268 0.437421 0.533797 0.016833 0.011948 0.121694 0.787708 0.016177 0.074421 0.625382 0.066925 0.266070 0.041623 0.117819 0.608153 0.165139 0.108889 0.145639 0.102001 0.604926 0.147434 0.521188 0.184986 0.064607 0.229219 0.180371 0.274237 0.096591 0.448801 0.071055 0.455813 0.332817 0.140315 0.084503 0.199982 0.448293 0.267222 0.389451 0.169545 0.155507 0.285497 0.424314 0.227621 0.101210 0.246855 Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Reverse complement motif 0.246855 0.227621 0.101210 0.424314 0.285497 0.169545 0.155507 0.389451 0.084503 0.448293 0.199982 0.267222 0.071055 0.332817 0.455813 0.140315 0.448801 0.274237 0.096591 0.180371 0.229219 0.184986 0.064607 0.521188 0.145639 0.604926 0.102001 0.147434 0.117819 0.165139 0.608153 0.108889 0.041623 0.066925 0.266070 0.625382 0.121694 0.016177 0.787708 0.074421 0.437421 0.016833 0.533797 0.011948 0.064269 0.066860 0.853604 0.015268 0.059797 0.110180 0.180680 0.649343 0.065110 0.058046 0.845072 0.031772 0.105642 0.027712 0.805846 0.060800 0.023009 0.155427 0.327424 0.494140 0.100827 0.018644 0.656850 0.223679 0.225440 0.175932 0.321741 0.276887 0.156609 0.208591 0.263136 0.371663 0.258773 0.244932 0.332518 0.163778 0.418629 0.180599 0.051416 0.349356 0.486963 0.360882 0.114042 0.038113 0.168550 0.396524 0.345968 0.088958 Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH CYYCBBCYYYTCCHCCTYYY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Reverse Complement Original Motif Backward 3 20 0.062538 Species: Mus musculus Original motif 0.319838 0.171199 0.138099 0.370865 0.269358 0.196600 0.346909 0.187133 0.176807 0.338888 0.193903 0.290402 0.230268 0.119645 0.310500 0.339587 0.517372 0.257658 0.111673 0.113296 0.159477 0.126524 0.561119 0.152879 0.117072 0.553013 0.130919 0.198996 0.073372 0.163548 0.525014 0.238066 0.143608 0.186896 0.170528 0.498967 0.054943 0.079034 0.722992 0.143031 0.048852 0.015134 0.852458 0.083556 0.029001 0.023938 0.918900 0.028160 0.036727 0.092645 0.090591 0.780037 0.017757 0.057598 0.895222 0.029423 0.026113 0.048113 0.879744 0.046030 0.023041 0.787043 0.123490 0.066426 0.579766 0.004868 0.296873 0.118493 0.303862 0.042931 0.290151 0.363055 0.099672 0.237431 0.262301 0.400597 0.217788 0.163908 0.367628 0.250676 0.450783 0.141108 0.226137 0.181972 0.485086 0.102553 0.242662 0.169700 0.109057 0.454222 0.145665 0.291056 Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Reverse complement motif 0.109057 0.145665 0.454222 0.291056 0.169700 0.102553 0.242662 0.485086 0.181972 0.141108 0.226137 0.450783 0.217788 0.367628 0.163908 0.250676 0.400597 0.237431 0.262301 0.099672 0.363055 0.042931 0.290151 0.303862 0.118493 0.004868 0.296873 0.579766 0.023041 0.123490 0.787043 0.066426 0.026113 0.879744 0.048113 0.046030 0.017757 0.895222 0.057598 0.029423 0.780037 0.092645 0.090591 0.036727 0.029001 0.918900 0.023938 0.028160 0.048852 0.852458 0.015134 0.083556 0.054943 0.722992 0.079034 0.143031 0.498967 0.186896 0.170528 0.143608 0.073372 0.525014 0.163548 0.238066 0.117072 0.130919 0.553013 0.198996 0.159477 0.561119 0.126524 0.152879 0.113296 0.257658 0.111673 0.517372 0.339587 0.119645 0.310500 0.230268 0.176807 0.193903 0.338888 0.290402 0.269358 0.346909 0.196600 0.187133 0.370865 0.171199 0.138099 0.319838 Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB -KKKAGGDGGAKKMGBBGKMG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Reverse Complement Reverse Complement Backward 1 20 0.063969 Species: Mus musculus Original motif 0.399785 0.446658 0.111435 0.042122 0.535175 0.103991 0.089706 0.271128 0.078171 0.387987 0.375083 0.158759 0.309001 0.519142 0.070618 0.101239 0.201844 0.255818 0.323149 0.219190 0.534101 0.109845 0.235026 0.121028 0.656038 0.037473 0.261484 0.045006 0.315713 0.164290 0.471815 0.048182 0.651960 0.009412 0.328237 0.010391 0.937365 0.017313 0.007516 0.037807 0.019983 0.044238 0.012387 0.923392 0.061195 0.021485 0.881645 0.035675 0.017521 0.952998 0.013139 0.016342 0.254160 0.029735 0.493023 0.223082 0.239200 0.593324 0.114503 0.052973 0.610822 0.071539 0.099169 0.218470 0.166610 0.389712 0.204400 0.239278 0.227752 0.361626 0.178497 0.232125 0.537030 0.182466 0.026035 0.254470 0.235902 0.151006 0.043788 0.569304 0.081851 0.250397 0.590059 0.077693 0.340417 0.189613 0.272075 0.197895 Consensus sequence: MWSMBAARRATGCDCABHATGD Reverse complement motif 0.197895 0.189613 0.272075 0.340417 0.081851 0.590059 0.250397 0.077693 0.569304 0.151006 0.043788 0.235902 0.254470 0.182466 0.026035 0.537030 0.227752 0.178497 0.361626 0.232125 0.166610 0.204400 0.389712 0.239278 0.218470 0.071539 0.099169 0.610822 0.239200 0.114503 0.593324 0.052973 0.254160 0.493023 0.029735 0.223082 0.017521 0.013139 0.952998 0.016342 0.061195 0.881645 0.021485 0.035675 0.923392 0.044238 0.012387 0.019983 0.037807 0.017313 0.007516 0.937365 0.010391 0.009412 0.328237 0.651960 0.315713 0.471815 0.164290 0.048182 0.045006 0.037473 0.261484 0.656038 0.121028 0.109845 0.235026 0.534101 0.201844 0.323149 0.255818 0.219190 0.309001 0.070618 0.519142 0.101239 0.078171 0.375083 0.387987 0.158759 0.271128 0.103991 0.089706 0.535175 0.399785 0.111435 0.446658 0.042122 Consensus sequence: DCATDBTGHGCATKMTTBRSWR Alignment: DCATDBTGHGCATKMTTBRSWR --KKKAGGDGGAKKMGBBGKMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Original Motif Reverse Complement Backward 3 20 0.064804 Species: Mus musculus Original motif 0.331499 0.188505 0.182841 0.297156 0.328961 0.213025 0.273530 0.184484 0.197213 0.129292 0.524914 0.148581 0.274491 0.226406 0.312118 0.186986 0.103231 0.393726 0.364988 0.138055 0.552594 0.166422 0.186262 0.094722 0.157618 0.064773 0.616497 0.161112 0.139166 0.176098 0.621185 0.063551 0.748420 0.062398 0.012447 0.176735 0.116584 0.009438 0.860326 0.013653 0.005030 0.003646 0.974877 0.016447 0.055257 0.007181 0.921760 0.015802 0.032748 0.058249 0.052709 0.856293 0.105606 0.872231 0.014370 0.007793 0.019480 0.497379 0.125899 0.357242 0.478582 0.269713 0.061464 0.190242 0.253985 0.287006 0.201320 0.257689 0.319384 0.210231 0.175842 0.294543 0.222123 0.287802 0.201294 0.288782 0.139951 0.376041 0.081133 0.402875 0.213450 0.343835 0.383676 0.059039 0.322294 0.355918 0.148062 0.173725 Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Reverse complement motif 0.322294 0.148062 0.355918 0.173725 0.213450 0.383676 0.343835 0.059039 0.402875 0.376041 0.081133 0.139951 0.288782 0.287802 0.201294 0.222123 0.294543 0.210231 0.175842 0.319384 0.253985 0.201320 0.287006 0.257689 0.190242 0.269713 0.061464 0.478582 0.019480 0.125899 0.497379 0.357242 0.105606 0.014370 0.872231 0.007793 0.856293 0.058249 0.052709 0.032748 0.055257 0.921760 0.007181 0.015802 0.005030 0.974877 0.003646 0.016447 0.116584 0.860326 0.009438 0.013653 0.176735 0.062398 0.012447 0.748420 0.139166 0.621185 0.176098 0.063551 0.157618 0.616497 0.064773 0.161112 0.094722 0.166422 0.186262 0.552594 0.103231 0.364988 0.393726 0.138055 0.274491 0.312118 0.226406 0.186986 0.197213 0.524914 0.129292 0.148581 0.184484 0.213025 0.273530 0.328961 0.297156 0.188505 0.182841 0.331499 Consensus sequence: DVMHHDHKGACCCTCCTSVCBH Alignment: DVMHHDHKGACCCTCCTSVCBH CYYCBBCYYYTCCHCCTYYY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 55 Motif name: TFM13 Original motif 0.666667 0.133333 0.000000 0.200000 0.066667 0.200000 0.000000 0.733333 0.200000 0.000000 0.333333 0.466667 0.666667 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.333333 0.600000 0.000000 0.000000 0.400000 0.333333 0.000000 0.000000 0.666667 0.000000 0.066667 0.000000 0.933333 0.133333 0.266667 0.000000 0.600000 0.266667 0.000000 0.000000 0.733333 0.466667 0.000000 0.466667 0.066667 0.600000 0.333333 0.000000 0.066667 0.800000 0.200000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.133333 0.200000 0.200000 0.466667 0.800000 0.000000 0.200000 0.000000 0.466667 0.266667 0.066667 0.200000 0.400000 0.333333 0.000000 0.266667 0.200000 0.000000 0.000000 0.800000 0.600000 0.000000 0.000000 0.400000 Consensus sequence: ATKAAWTTTTRMAABAHHTW Reserve complement motif 0.400000 0.000000 0.000000 0.600000 0.800000 0.000000 0.000000 0.200000 0.266667 0.333333 0.000000 0.400000 0.200000 0.266667 0.066667 0.466667 0.000000 0.000000 0.200000 0.800000 0.466667 0.200000 0.200000 0.133333 0.000000 0.333333 0.000000 0.666667 0.000000 0.200000 0.000000 0.800000 0.066667 0.333333 0.000000 0.600000 0.066667 0.000000 0.466667 0.466667 0.733333 0.000000 0.000000 0.266667 0.600000 0.266667 0.000000 0.133333 0.933333 0.066667 0.000000 0.000000 0.666667 0.000000 0.000000 0.333333 0.400000 0.000000 0.000000 0.600000 0.333333 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.666667 0.466667 0.000000 0.333333 0.200000 0.733333 0.200000 0.000000 0.066667 0.200000 0.133333 0.000000 0.666667 Consensus sequence: WAHHTVTTYKAAAAWTTRAT ************************************************************************ Best Matches for Motif ID 55 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Reverse Complement Reverse Complement Backward 2 20 0.055626 Species: Mus musculus Original motif 0.067627 0.131333 0.654425 0.146615 0.156488 0.114442 0.145630 0.583441 0.206450 0.265630 0.358017 0.169903 0.090729 0.460713 0.274712 0.173847 0.285994 0.099998 0.154485 0.459523 0.635908 0.184787 0.072982 0.106323 0.748421 0.039204 0.092605 0.119769 0.081342 0.061327 0.044532 0.812799 0.143120 0.043879 0.024216 0.788785 0.247544 0.092102 0.621453 0.038901 0.295531 0.036295 0.027594 0.640580 0.194561 0.305468 0.339916 0.160055 0.175038 0.193568 0.101212 0.530182 0.145226 0.167488 0.559871 0.127415 0.271501 0.237429 0.206701 0.284369 0.216834 0.109191 0.569605 0.104370 0.182624 0.177160 0.300475 0.339742 0.331737 0.198645 0.265137 0.204482 0.230155 0.359365 0.183450 0.227029 0.056581 0.067297 0.463052 0.413070 0.198891 0.324626 0.304424 0.172059 0.181968 0.287547 0.202419 0.328066 Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Reverse complement motif 0.328066 0.287547 0.202419 0.181968 0.198891 0.304424 0.324626 0.172059 0.056581 0.463052 0.067297 0.413070 0.230155 0.183450 0.359365 0.227029 0.204482 0.198645 0.265137 0.331737 0.339742 0.177160 0.300475 0.182624 0.216834 0.569605 0.109191 0.104370 0.284369 0.237429 0.206701 0.271501 0.145226 0.559871 0.167488 0.127415 0.530182 0.193568 0.101212 0.175038 0.194561 0.339916 0.305468 0.160055 0.640580 0.036295 0.027594 0.295531 0.247544 0.621453 0.092102 0.038901 0.788785 0.043879 0.024216 0.143120 0.812799 0.061327 0.044532 0.081342 0.119769 0.039204 0.092605 0.748421 0.106323 0.184787 0.072982 0.635908 0.459523 0.099998 0.154485 0.285994 0.090729 0.274712 0.460713 0.173847 0.206450 0.358017 0.265630 0.169903 0.583441 0.114442 0.145630 0.156488 0.067627 0.654425 0.131333 0.146615 Consensus sequence: VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC -WAHHTVTTYKAAAAWTTRAT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondary Original Motif Reverse Complement Forward 2 20 0.064268 Species: Mus musculus Original motif 0.177641 0.319872 0.115137 0.387350 0.136644 0.182137 0.205873 0.475347 0.254263 0.244280 0.165207 0.336250 0.240415 0.207557 0.237497 0.314530 0.271041 0.214702 0.364395 0.149863 0.095475 0.320104 0.191738 0.392682 0.500902 0.142722 0.026556 0.329820 0.051221 0.023698 0.897245 0.027836 0.922410 0.027509 0.024058 0.026023 0.030735 0.070903 0.024248 0.874114 0.242120 0.231992 0.225143 0.300745 0.106956 0.220471 0.283490 0.389083 0.152079 0.165830 0.135066 0.547025 0.839205 0.051581 0.060119 0.049095 0.041204 0.069147 0.070830 0.818819 0.051861 0.848177 0.027599 0.072363 0.383793 0.016807 0.397470 0.201931 0.381899 0.215846 0.255908 0.146347 0.094792 0.358651 0.280905 0.265652 0.296132 0.181545 0.178433 0.343890 0.301997 0.254722 0.108566 0.334714 0.349481 0.270693 0.137507 0.242319 Consensus sequence: HBHDVBWGATHBTATCRVBHHH Reverse complement motif 0.242319 0.270693 0.137507 0.349481 0.334714 0.254722 0.108566 0.301997 0.343890 0.181545 0.178433 0.296132 0.094792 0.280905 0.358651 0.265652 0.146347 0.215846 0.255908 0.381899 0.383793 0.397470 0.016807 0.201931 0.051861 0.027599 0.848177 0.072363 0.818819 0.069147 0.070830 0.041204 0.049095 0.051581 0.060119 0.839205 0.547025 0.165830 0.135066 0.152079 0.389083 0.220471 0.283490 0.106956 0.300745 0.231992 0.225143 0.242120 0.874114 0.070903 0.024248 0.030735 0.026023 0.027509 0.024058 0.922410 0.051221 0.897245 0.023698 0.027836 0.329820 0.142722 0.026556 0.500902 0.392682 0.320104 0.191738 0.095475 0.271041 0.364395 0.214702 0.149863 0.314530 0.207557 0.237497 0.240415 0.336250 0.244280 0.165207 0.254263 0.475347 0.182137 0.205873 0.136644 0.387350 0.319872 0.115137 0.177641 Consensus sequence: HHHBBMGATAVHATCWVVDHVH Alignment: HHHBBMGATAVHATCWVVDHVH -ATKAAWTTTTRMAABAHHTW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Reverse Complement Reverse Complement Forward 3 20 0.064945 Species: Mus musculus Original motif 0.360997 0.300272 0.115555 0.223177 0.309749 0.228429 0.166233 0.295589 0.149419 0.176868 0.240155 0.433558 0.379704 0.095791 0.276373 0.248133 0.394549 0.174184 0.130641 0.300626 0.443749 0.070776 0.211081 0.274393 0.364301 0.074356 0.370406 0.190936 0.791976 0.038475 0.093390 0.076159 0.963721 0.001826 0.002456 0.031997 0.004516 0.954596 0.008092 0.032796 0.981080 0.002062 0.002161 0.014697 0.986185 0.001846 0.006976 0.004992 0.059567 0.003649 0.002189 0.934595 0.495328 0.024257 0.240450 0.239965 0.305027 0.094878 0.526069 0.074025 0.418442 0.196237 0.158323 0.226998 0.336713 0.220452 0.191155 0.251680 0.192296 0.300342 0.169047 0.338315 0.240387 0.144634 0.128513 0.486465 0.290763 0.271259 0.116600 0.321377 0.224825 0.296233 0.229255 0.249687 0.493240 0.171285 0.075148 0.260326 Consensus sequence: HHBDHDDAACAATDRHHHHHBW Reverse complement motif 0.260326 0.171285 0.075148 0.493240 0.224825 0.229255 0.296233 0.249687 0.321377 0.271259 0.116600 0.290763 0.486465 0.144634 0.128513 0.240387 0.338315 0.300342 0.169047 0.192296 0.251680 0.220452 0.191155 0.336713 0.226998 0.196237 0.158323 0.418442 0.305027 0.526069 0.094878 0.074025 0.239965 0.024257 0.240450 0.495328 0.934595 0.003649 0.002189 0.059567 0.004992 0.001846 0.006976 0.986185 0.014697 0.002062 0.002161 0.981080 0.004516 0.008092 0.954596 0.032796 0.031997 0.001826 0.002456 0.963721 0.076159 0.038475 0.093390 0.791976 0.364301 0.370406 0.074356 0.190936 0.274393 0.070776 0.211081 0.443749 0.300626 0.174184 0.130641 0.394549 0.248133 0.095791 0.276373 0.379704 0.433558 0.176868 0.240155 0.149419 0.295589 0.228429 0.166233 0.309749 0.223177 0.300272 0.115555 0.360997 Consensus sequence: WBHHHHHMDATTGTTHDHDVHH Alignment: WBHHHHHMDATTGTTHDHDVHH --WAHHTVTTYKAAAAWTTRAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Original Motif Reverse Complement Backward 3 20 0.065168 Species: Mus musculus Original motif 0.151572 0.262753 0.258275 0.327401 0.221834 0.113385 0.275380 0.389400 0.297769 0.136928 0.134678 0.430625 0.270099 0.110415 0.271106 0.348380 0.265471 0.090253 0.223340 0.420936 0.616582 0.090091 0.171960 0.121367 0.197318 0.107541 0.406904 0.288237 0.798258 0.046950 0.001406 0.153385 0.003195 0.002516 0.989707 0.004582 0.991503 0.002748 0.002617 0.003132 0.005015 0.002764 0.003026 0.989195 0.948394 0.008932 0.001344 0.041330 0.973109 0.004100 0.004081 0.018710 0.040365 0.113905 0.828185 0.017545 0.736608 0.130524 0.113464 0.019404 0.415921 0.106101 0.316613 0.161365 0.376582 0.170927 0.155572 0.296919 0.137731 0.197151 0.211055 0.454064 0.324853 0.122747 0.246107 0.306293 0.462490 0.207311 0.159392 0.170807 0.380420 0.188972 0.311990 0.118618 0.222178 0.157873 0.380486 0.239463 Consensus sequence: BDHDDADAGATAAGADHBDHVD Reverse complement motif 0.222178 0.380486 0.157873 0.239463 0.118618 0.188972 0.311990 0.380420 0.170807 0.207311 0.159392 0.462490 0.306293 0.122747 0.246107 0.324853 0.454064 0.197151 0.211055 0.137731 0.296919 0.170927 0.155572 0.376582 0.161365 0.106101 0.316613 0.415921 0.019404 0.130524 0.113464 0.736608 0.040365 0.828185 0.113905 0.017545 0.018710 0.004100 0.004081 0.973109 0.041330 0.008932 0.001344 0.948394 0.989195 0.002764 0.003026 0.005015 0.003132 0.002748 0.002617 0.991503 0.003195 0.989707 0.002516 0.004582 0.153385 0.046950 0.001406 0.798258 0.197318 0.406904 0.107541 0.288237 0.121367 0.090091 0.171960 0.616582 0.420936 0.090253 0.223340 0.265471 0.348380 0.110415 0.271106 0.270099 0.430625 0.136928 0.134678 0.297769 0.389400 0.113385 0.275380 0.221834 0.327401 0.262753 0.258275 0.151572 Consensus sequence: HBHDVHDTCTTATCTHTDDHDV Alignment: HBHDVHDTCTTATCTHTDDHDV ATKAAWTTTTRMAABAHHTW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondary Original Motif Reverse Complement Backward 3 20 0.067079 Species: Mus musculus Original motif 0.314514 0.275352 0.257617 0.152518 0.126939 0.598294 0.130576 0.144192 0.102265 0.155334 0.177957 0.564445 0.129288 0.282678 0.326990 0.261044 0.318166 0.227823 0.175681 0.278330 0.109019 0.380838 0.278328 0.231815 0.226145 0.289206 0.291300 0.193348 0.035863 0.844339 0.072582 0.047216 0.223793 0.187244 0.088092 0.500871 0.039800 0.029681 0.026201 0.904317 0.298298 0.032147 0.654746 0.014809 0.014729 0.022023 0.944826 0.018422 0.485114 0.004925 0.013785 0.496176 0.035708 0.020381 0.240804 0.703108 0.951152 0.012738 0.017886 0.018224 0.023713 0.944394 0.009538 0.022355 0.291067 0.385205 0.232388 0.091339 0.340334 0.199588 0.311526 0.148552 0.198713 0.472138 0.178319 0.150830 0.321155 0.269932 0.311301 0.097612 0.412646 0.195252 0.231950 0.160152 0.297134 0.180928 0.250400 0.271538 0.151169 0.305386 0.358574 0.184871 Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Reverse complement motif 0.151169 0.358574 0.305386 0.184871 0.271538 0.180928 0.250400 0.297134 0.160152 0.195252 0.231950 0.412646 0.097612 0.269932 0.311301 0.321155 0.198713 0.178319 0.472138 0.150830 0.148552 0.199588 0.311526 0.340334 0.291067 0.232388 0.385205 0.091339 0.023713 0.009538 0.944394 0.022355 0.018224 0.012738 0.017886 0.951152 0.703108 0.020381 0.240804 0.035708 0.496176 0.004925 0.013785 0.485114 0.014729 0.944826 0.022023 0.018422 0.298298 0.654746 0.032147 0.014809 0.904317 0.029681 0.026201 0.039800 0.500871 0.187244 0.088092 0.223793 0.035863 0.072582 0.844339 0.047216 0.226145 0.291300 0.289206 0.193348 0.109019 0.278328 0.380838 0.231815 0.278330 0.227823 0.175681 0.318166 0.129288 0.326990 0.282678 0.261044 0.564445 0.155334 0.177957 0.102265 0.126939 0.130576 0.598294 0.144192 0.152518 0.275352 0.257617 0.314514 Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB Alignment: BDBBVBVGTAWCCAAGVBHBAGB -ATKAAWTTTTRMAABAHHTW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 56 Motif name: TFM11 Original motif 0.294118 0.235294 0.117647 0.352941 0.382353 0.205882 0.205882 0.205882 0.529412 0.000000 0.117647 0.352941 0.235294 0.294118 0.323529 0.147059 1.000000 0.000000 0.000000 0.000000 0.941176 0.000000 0.000000 0.058824 0.764706 0.000000 0.029412 0.205882 0.382353 0.235294 0.176471 0.205882 0.735294 0.000000 0.058824 0.205882 0.735294 0.029412 0.117647 0.117647 0.676471 0.000000 0.088235 0.235294 0.529412 0.117647 0.205882 0.147059 0.705882 0.176471 0.117647 0.000000 0.441176 0.352941 0.147059 0.058824 0.941176 0.058824 0.000000 0.000000 0.852941 0.000000 0.147059 0.000000 0.676471 0.088235 0.000000 0.235294 0.529412 0.323529 0.117647 0.029412 0.470588 0.176471 0.000000 0.352941 0.411765 0.000000 0.147059 0.441176 0.500000 0.088235 0.147059 0.264706 0.294118 0.205882 0.088235 0.411765 0.205882 0.235294 0.264706 0.294118 0.470588 0.000000 0.117647 0.411765 0.617647 0.176471 0.205882 0.000000 Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reserve complement motif 0.000000 0.176471 0.205882 0.617647 0.411765 0.000000 0.117647 0.470588 0.294118 0.235294 0.264706 0.205882 0.411765 0.205882 0.088235 0.294118 0.264706 0.088235 0.147059 0.500000 0.441176 0.000000 0.147059 0.411765 0.352941 0.176471 0.000000 0.470588 0.029412 0.323529 0.117647 0.529412 0.235294 0.088235 0.000000 0.676471 0.000000 0.000000 0.147059 0.852941 0.000000 0.058824 0.000000 0.941176 0.058824 0.352941 0.147059 0.441176 0.000000 0.176471 0.117647 0.705882 0.147059 0.117647 0.205882 0.529412 0.235294 0.000000 0.088235 0.676471 0.117647 0.029412 0.117647 0.735294 0.205882 0.000000 0.058824 0.735294 0.205882 0.235294 0.176471 0.382353 0.205882 0.000000 0.029412 0.764706 0.058824 0.000000 0.000000 0.941176 0.000000 0.000000 0.000000 1.000000 0.235294 0.323529 0.294118 0.147059 0.352941 0.000000 0.117647 0.529412 0.205882 0.205882 0.205882 0.382353 0.352941 0.235294 0.117647 0.294118 Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH ************************************************************************ Best Matches for Motif ID 56 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_primary Original Motif Original Motif Backward 2 23 0.076060 Species: Mus musculus Original motif 0.218345 0.231533 0.152528 0.397594 0.264604 0.126115 0.320860 0.288421 0.117304 0.186844 0.172946 0.522906 0.111929 0.277908 0.409084 0.201079 0.343319 0.311376 0.123612 0.221692 0.193354 0.374280 0.157338 0.275028 0.166348 0.578991 0.130872 0.123789 0.006937 0.931183 0.046809 0.015072 0.255581 0.289587 0.125513 0.329319 0.002582 0.012615 0.002782 0.982021 0.850584 0.007973 0.140639 0.000803 0.037792 0.002285 0.957277 0.002646 0.009414 0.921481 0.001636 0.067469 0.943403 0.000980 0.042401 0.013216 0.991166 0.002931 0.003540 0.002364 0.003651 0.987110 0.001106 0.008133 0.208873 0.369705 0.319129 0.102292 0.322535 0.186617 0.374187 0.116660 0.326738 0.179486 0.226374 0.267402 0.299697 0.185329 0.133025 0.381949 0.300824 0.266836 0.096437 0.335904 0.418443 0.191068 0.127183 0.263306 0.386727 0.204062 0.126050 0.283161 Consensus sequence: HDTBHHCCHTAGCAACVVDHHHH Reverse complement motif 0.283161 0.204062 0.126050 0.386727 0.263306 0.191068 0.127183 0.418443 0.335904 0.266836 0.096437 0.300824 0.381949 0.185329 0.133025 0.299697 0.267402 0.179486 0.226374 0.326738 0.322535 0.374187 0.186617 0.116660 0.208873 0.319129 0.369705 0.102292 0.003651 0.001106 0.987110 0.008133 0.002364 0.002931 0.003540 0.991166 0.013216 0.000980 0.042401 0.943403 0.009414 0.001636 0.921481 0.067469 0.037792 0.957277 0.002285 0.002646 0.000803 0.007973 0.140639 0.850584 0.982021 0.012615 0.002782 0.002582 0.329319 0.289587 0.125513 0.255581 0.006937 0.046809 0.931183 0.015072 0.166348 0.130872 0.578991 0.123789 0.193354 0.157338 0.374280 0.275028 0.221692 0.311376 0.123612 0.343319 0.111929 0.409084 0.277908 0.201079 0.522906 0.186844 0.172946 0.117304 0.264604 0.320860 0.126115 0.288421 0.397594 0.231533 0.152528 0.218345 Consensus sequence: HHHHDVVGTTGCTAHGGDHBAHH Alignment: --HDTBHHCCHTAGCAACVVDHHHH HDWVAAAHAAAAAMAAAMWWWHBWA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Original Motif Original Motif Forward 1 23 0.080352 Species: Mus musculus Original motif 0.168550 0.345968 0.396524 0.088958 0.038113 0.360882 0.114042 0.486963 0.349356 0.180599 0.051416 0.418629 0.258773 0.332518 0.244932 0.163778 0.371663 0.208591 0.263136 0.156609 0.225440 0.321741 0.175932 0.276887 0.100827 0.656850 0.018644 0.223679 0.494140 0.155427 0.327424 0.023009 0.105642 0.805846 0.027712 0.060800 0.065110 0.845072 0.058046 0.031772 0.649343 0.110180 0.180680 0.059797 0.064269 0.853604 0.066860 0.015268 0.437421 0.533797 0.016833 0.011948 0.121694 0.787708 0.016177 0.074421 0.625382 0.066925 0.266070 0.041623 0.117819 0.608153 0.165139 0.108889 0.145639 0.102001 0.604926 0.147434 0.521188 0.184986 0.064607 0.229219 0.180371 0.274237 0.096591 0.448801 0.071055 0.455813 0.332817 0.140315 0.084503 0.199982 0.448293 0.267222 0.389451 0.169545 0.155507 0.285497 0.424314 0.227621 0.101210 0.246855 Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Reverse complement motif 0.246855 0.227621 0.101210 0.424314 0.285497 0.169545 0.155507 0.389451 0.084503 0.448293 0.199982 0.267222 0.071055 0.332817 0.455813 0.140315 0.448801 0.274237 0.096591 0.180371 0.229219 0.184986 0.064607 0.521188 0.145639 0.604926 0.102001 0.147434 0.117819 0.165139 0.608153 0.108889 0.041623 0.066925 0.266070 0.625382 0.121694 0.016177 0.787708 0.074421 0.437421 0.016833 0.533797 0.011948 0.064269 0.066860 0.853604 0.015268 0.059797 0.110180 0.180680 0.649343 0.065110 0.058046 0.845072 0.031772 0.105642 0.027712 0.805846 0.060800 0.023009 0.155427 0.327424 0.494140 0.100827 0.018644 0.656850 0.223679 0.225440 0.175932 0.321741 0.276887 0.156609 0.208591 0.263136 0.371663 0.258773 0.244932 0.332518 0.163778 0.418629 0.180599 0.051416 0.349356 0.486963 0.360882 0.114042 0.038113 0.168550 0.396524 0.345968 0.088958 Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH-- HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_primary Original Motif Original Motif Forward 2 23 0.080873 Species: Mus musculus Original motif 0.402634 0.249702 0.143705 0.203959 0.709619 0.108953 0.130781 0.050647 0.334232 0.077498 0.228818 0.359452 0.131721 0.094794 0.234481 0.539005 0.170102 0.237609 0.252464 0.339824 0.244961 0.347304 0.228129 0.179606 0.612141 0.132244 0.180110 0.075504 0.472236 0.042388 0.234419 0.250957 0.125213 0.007413 0.849788 0.017587 0.702068 0.064216 0.141992 0.091724 0.008657 0.038238 0.002959 0.950145 0.007170 0.002244 0.986824 0.003763 0.002862 0.979956 0.000711 0.016471 0.971196 0.001954 0.011441 0.015409 0.105575 0.031482 0.022836 0.840107 0.031534 0.736742 0.032785 0.198939 0.479153 0.347558 0.031799 0.141490 0.056405 0.123140 0.023989 0.796466 0.111194 0.195344 0.501360 0.192102 0.376359 0.416820 0.072818 0.134004 0.225111 0.249460 0.306563 0.218866 0.405251 0.168478 0.108618 0.317653 0.165386 0.191749 0.268604 0.374261 Consensus sequence: HADTBVADGATGCATCMTGMVHB Reverse complement motif 0.374261 0.191749 0.268604 0.165386 0.317653 0.168478 0.108618 0.405251 0.225111 0.306563 0.249460 0.218866 0.376359 0.072818 0.416820 0.134004 0.111194 0.501360 0.195344 0.192102 0.796466 0.123140 0.023989 0.056405 0.141490 0.347558 0.031799 0.479153 0.031534 0.032785 0.736742 0.198939 0.840107 0.031482 0.022836 0.105575 0.015409 0.001954 0.011441 0.971196 0.002862 0.000711 0.979956 0.016471 0.007170 0.986824 0.002244 0.003763 0.950145 0.038238 0.002959 0.008657 0.091724 0.064216 0.141992 0.702068 0.125213 0.849788 0.007413 0.017587 0.250957 0.042388 0.234419 0.472236 0.075504 0.132244 0.180110 0.612141 0.244961 0.228129 0.347304 0.179606 0.339824 0.237609 0.252464 0.170102 0.539005 0.094794 0.234481 0.131721 0.359452 0.077498 0.228818 0.334232 0.050647 0.108953 0.130781 0.709619 0.203959 0.249702 0.143705 0.402634 Consensus sequence: VHVRCAYGATGCATCDTVVADTH Alignment: HADTBVADGATGCATCMTGMVHB-- -HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Original Motif Original Motif Backward 3 23 0.081221 Species: Mus musculus Original motif 0.404007 0.395873 0.173319 0.026801 0.305977 0.215534 0.215359 0.263130 0.370148 0.250957 0.113088 0.265808 0.324336 0.229498 0.174679 0.271487 0.263563 0.137896 0.079217 0.519324 0.265762 0.222582 0.082555 0.429102 0.206721 0.288405 0.017851 0.487023 0.164361 0.236500 0.061051 0.538088 0.593344 0.348446 0.050304 0.007906 0.031328 0.947050 0.007032 0.014590 0.010428 0.956605 0.029142 0.003825 0.459636 0.207616 0.155368 0.177380 0.014573 0.964608 0.012209 0.008610 0.066291 0.918196 0.008729 0.006784 0.019488 0.866774 0.018897 0.094841 0.767405 0.104198 0.029234 0.099164 0.052494 0.772531 0.039832 0.135142 0.296085 0.243498 0.350935 0.109482 0.518843 0.226659 0.124784 0.129714 0.647901 0.019721 0.159901 0.172477 0.113912 0.231511 0.214864 0.439713 0.223117 0.310596 0.293328 0.172959 0.185557 0.487662 0.136321 0.190459 Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Reverse complement motif 0.185557 0.136321 0.487662 0.190459 0.223117 0.293328 0.310596 0.172959 0.439713 0.231511 0.214864 0.113912 0.172477 0.019721 0.159901 0.647901 0.129714 0.226659 0.124784 0.518843 0.296085 0.350935 0.243498 0.109482 0.052494 0.039832 0.772531 0.135142 0.099164 0.104198 0.029234 0.767405 0.019488 0.018897 0.866774 0.094841 0.066291 0.008729 0.918196 0.006784 0.014573 0.012209 0.964608 0.008610 0.177380 0.207616 0.155368 0.459636 0.010428 0.029142 0.956605 0.003825 0.031328 0.007032 0.947050 0.014590 0.007906 0.348446 0.050304 0.593344 0.538088 0.236500 0.061051 0.164361 0.487023 0.288405 0.017851 0.206721 0.429102 0.222582 0.082555 0.265762 0.519324 0.137896 0.079217 0.263563 0.271487 0.229498 0.174679 0.324336 0.265808 0.250957 0.113088 0.370148 0.263130 0.215534 0.215359 0.305977 0.026801 0.395873 0.173319 0.404007 Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY Alignment: --MHHHWHYTMCCHCCCACVAABVH HDWVAAAHAAAAAMAAAMWWWHBWA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondary Original Motif Reverse Complement Forward 1 23 0.081307 Species: Mus musculus Original motif 0.314514 0.275352 0.257617 0.152518 0.126939 0.598294 0.130576 0.144192 0.102265 0.155334 0.177957 0.564445 0.129288 0.282678 0.326990 0.261044 0.318166 0.227823 0.175681 0.278330 0.109019 0.380838 0.278328 0.231815 0.226145 0.289206 0.291300 0.193348 0.035863 0.844339 0.072582 0.047216 0.223793 0.187244 0.088092 0.500871 0.039800 0.029681 0.026201 0.904317 0.298298 0.032147 0.654746 0.014809 0.014729 0.022023 0.944826 0.018422 0.485114 0.004925 0.013785 0.496176 0.035708 0.020381 0.240804 0.703108 0.951152 0.012738 0.017886 0.018224 0.023713 0.944394 0.009538 0.022355 0.291067 0.385205 0.232388 0.091339 0.340334 0.199588 0.311526 0.148552 0.198713 0.472138 0.178319 0.150830 0.321155 0.269932 0.311301 0.097612 0.412646 0.195252 0.231950 0.160152 0.297134 0.180928 0.250400 0.271538 0.151169 0.305386 0.358574 0.184871 Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Reverse complement motif 0.151169 0.358574 0.305386 0.184871 0.271538 0.180928 0.250400 0.297134 0.160152 0.195252 0.231950 0.412646 0.097612 0.269932 0.311301 0.321155 0.198713 0.178319 0.472138 0.150830 0.148552 0.199588 0.311526 0.340334 0.291067 0.232388 0.385205 0.091339 0.023713 0.009538 0.944394 0.022355 0.018224 0.012738 0.017886 0.951152 0.703108 0.020381 0.240804 0.035708 0.496176 0.004925 0.013785 0.485114 0.014729 0.944826 0.022023 0.018422 0.298298 0.654746 0.032147 0.014809 0.904317 0.029681 0.026201 0.039800 0.500871 0.187244 0.088092 0.223793 0.035863 0.072582 0.844339 0.047216 0.226145 0.291300 0.289206 0.193348 0.109019 0.278328 0.380838 0.231815 0.278330 0.227823 0.175681 0.318166 0.129288 0.326990 0.282678 0.261044 0.564445 0.155334 0.177957 0.102265 0.126939 0.130576 0.598294 0.144192 0.152518 0.275352 0.257617 0.314514 Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB Alignment: BDBBVBVGTAWCCAAGVBHBAGB-- HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 12-16-2022 12:54:26 Runtime: 365.906758 seconds MOTIFSIM is written by Ngoc Tam L. Tran